Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 243 of 425
Found at i:74532189 original size:29 final size:29
Alignment explanation
Indices: 74532147--74532206 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
74532137 ATTATGGATG
*
74532147 AAATTACTTATATCGTCCATAAGTGCACT
1 AAATTACTTATATCGTCCATAAGTACACT
**
74532176 AAATTACTTATATCGTGGATAAGTACACT
1 AAATTACTTATATCGTCCATAAGTACACT
74532205 AA
1 AA
74532207 CTCGTGAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (29 bp):
AAATTACTTATATCGTCCATAAGTACACT
Found at i:74536855 original size:2 final size:2
Alignment explanation
Indices: 74536848--74536879 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
74536838 AAAACACTTA
74536848 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74536880 CAATATTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74538283 original size:50 final size:50
Alignment explanation
Indices: 74538211--74538448 Score: 249
Period size: 50 Copynumber: 4.9 Consensus size: 50
74538201 CCATCAAAGT
* *
74538211 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTTGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCGAGGC
* * * * * *
74538261 TGATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCGAG-GC
* * ** * *
74538311 CGATGTCATGTCCCAGACATTGTCTTA-A--A-CTGAC--ATAT-TAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCGAGGC
* *
74538354 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCGTATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCGAGGC
* *
74538404 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATC
74538449 CCTAGCATCA
Statistics
Matches: 149, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
43 27 0.18
44 4 0.03
46 4 0.03
47 3 0.02
49 5 0.03
50 106 0.71
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCGAGGC
Found at i:74538384 original size:93 final size:93
Alignment explanation
Indices: 74538262--74538430 Score: 232
Period size: 93 Copynumber: 1.8 Consensus size: 93
74538252 TATCGAGGCT
* * * * * *
74538262 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATCTATCG-GTGCCGATGTCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATATCGAG-GCCGATGCCATGTCCCA
*
74538326 GACATTGTCTTAAACTGACATATTAAGCC
65 GACATGGTCTTAAACTGACATATTAAGCC
* * *
74538355 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCGTATCTCGAGGCCGATGCCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATATCGAGGCCGATGCCATGTCCCAG
74538420 ACATGGTCTTA
66 ACATGGTCTTA
74538431 CACTAGCTCT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
93 64 0.98
94 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTAAACTGACATATTAAGCC
Found at i:74544754 original size:50 final size:50
Alignment explanation
Indices: 74544688--74544882 Score: 243
Period size: 50 Copynumber: 3.9 Consensus size: 50
74544678 CATCAAAGTC
* *
74544688 GATGCCATGTCCCAGACATGGTATTACACTGACTCTCGTATATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
* * * * *
74544738 GATGCCATGTCTCAGACATTGGTCTTATACTGGCTCTCATCTATCG-GTGCC
1 GATGCCATGTCCCAGACA-TGGTCTTACACTGACTCTCATATATCGAG-GCT
* *
74544789 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTATCATATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGCT
*
74544839 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTTTCATATATC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATC
74544883 CCTAACATCA
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
50 83 0.66
51 42 0.34
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
Found at i:74544816 original size:101 final size:100
Alignment explanation
Indices: 74544687--74544882 Score: 286
Period size: 101 Copynumber: 1.9 Consensus size: 100
74544677 CCATCAAAGT
* * *
74544687 CGATGCCATGTCCCAGACATGGTATTACACT-GACTCTCGTATATCGAGGCTGATGCCATGTCTC
1 CGATGCCATGTCCCAGACATGGTATTACACTAG-CTATCATATATCGAGGCTGATGCCATGTCCC
* * *
74544751 AGACATTGGTCTTATACTGGCTCTCATCTATCGGTGC
65 AGACA-TGGTCTTACACTAGCTCTCATATATCGGTGC
* *
74544788 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATCTCGAGGCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTATTACACTAGCTATCATATATCGAGGCTGATGCCATGTCCCA
*
74544853 GACATGGTCTTACACTAGCTTTCATATATC
66 GACATGGTCTTACACTAGCTCTCATATATC
74544883 CCTAACATCA
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
100 22 0.26
101 62 0.73
102 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (100 bp):
CGATGCCATGTCCCAGACATGGTATTACACTAGCTATCATATATCGAGGCTGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATATATCGGTGC
Found at i:74551064 original size:93 final size:93
Alignment explanation
Indices: 74550952--74551123 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74550942 CGCCCATAAG
* *
74550952 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74551017 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74551045 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74551110 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74551124 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74551120 original size:46 final size:46
Alignment explanation
Indices: 74550945--74551120 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74550935 TGTAACCCGC
* * *
74550945 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74550991 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74551041 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74551084 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74551121 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74556366 original size:40 final size:40
Alignment explanation
Indices: 74556321--74556450 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
74556311 CGGAATATAA
74556321 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74556361 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74556401 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
74556441 CCGGATATAA
1 CCGGATATAA
74556451 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74556465 original size:40 final size:40
Alignment explanation
Indices: 74556337--74556487 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
74556327 ATAAGCATGT
* * *
74556337 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
74556377 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
74556417 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
74556457 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74556488 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:74556471 original size:80 final size:79
Alignment explanation
Indices: 74556337--74556487 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74556327 ATAAGCATGT
*
74556337 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
74556402 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
74556417 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
74556480 CCGGATAT
64 CCGGATAT
74556488 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:74561879 original size:93 final size:93
Alignment explanation
Indices: 74561767--74561938 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74561757 CGCCCATAAG
* *
74561767 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74561832 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74561860 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74561925 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74561939 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74561935 original size:46 final size:46
Alignment explanation
Indices: 74561760--74561935 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74561750 TGTAACCCGC
* * *
74561760 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74561806 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74561856 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74561899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74561936 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74563961 original size:30 final size:30
Alignment explanation
Indices: 74563927--74563987 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74563917 TCCTTAACTC
74563927 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74563957 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74563987 A
1 A
74563988 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74565092 original size:19 final size:19
Alignment explanation
Indices: 74565068--74565106 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74565058 GACATATAAC
* *
74565068 TCTTGATATGGCATGAAAA
1 TCTTGAGATGACATGAAAA
*
74565087 TCTTGAGATGATATGAAAA
1 TCTTGAGATGACATGAAAA
74565106 T
1 T
74565107 GACTAGAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (19 bp):
TCTTGAGATGACATGAAAA
Found at i:74566099 original size:21 final size:22
Alignment explanation
Indices: 74566075--74566116 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
74566065 AGCACAGGAG
*
74566075 TGTCCCATGG-TCACATGGGCA
1 TGTCCCATGGACCACATGGGCA
*
74566096 TGTCCCTTGGACCACATGGGC
1 TGTCCCATGGACCACATGGGC
74566117 GTGTGACCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.24
Consensus pattern (22 bp):
TGTCCCATGGACCACATGGGCA
Found at i:74567758 original size:13 final size:13
Alignment explanation
Indices: 74567719--74567762 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
74567709 ATTATGAGTT
*
74567719 AAATGTGTAAATG
1 AAATGTTTAAATG
* *
74567732 AAATGGTAAAATG
1 AAATGTTTAAATG
*
74567745 AAATGTTTAGATG
1 AAATGTTTAAATG
74567758 AAATG
1 AAATG
74567763 CTTATACGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.30
Consensus pattern (13 bp):
AAATGTTTAAATG
Found at i:74567806 original size:13 final size:13
Alignment explanation
Indices: 74567729--74567831 Score: 89
Period size: 13 Copynumber: 7.9 Consensus size: 13
74567719 AAATGTGTAA
* *
74567729 ATGAAATGGTAAA
1 ATGAAATGGTTAT
* *
74567742 ATGAAATGTTTAG
1 ATGAAATGGTTAT
*
74567755 ATGAAATGCTTAT
1 ATGAAATGGTTAT
* *
74567768 ACGAAATGGCTAT
1 ATGAAATGGTTAT
* **
74567781 ATCAAATTATTAT
1 ATGAAATGGTTAT
74567794 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* *
74567807 ATGAATTGGTTGT
1 ATGAAATGGTTAT
*
74567820 ATGAACTGGTTA
1 ATGAAATGGTTA
74567832 CATGGAAATA
Statistics
Matches: 70, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 70 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:74568146 original size:20 final size:22
Alignment explanation
Indices: 74568117--74568168 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
74568107 AGGCCATGTA
*
74568117 GGTATTGATACTTAT-AT-GAT
1 GGTATCGATACTTATCATAGAT
* *
74568137 GGTATCGATATTTCTCATAGAT
1 GGTATCGATACTTATCATAGAT
74568159 GGTATCGATA
1 GGTATCGATA
74568169 TCATTTAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 12 0.44
21 2 0.07
22 13 0.48
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (22 bp):
GGTATCGATACTTATCATAGAT
Found at i:74572872 original size:40 final size:40
Alignment explanation
Indices: 74572827--74572914 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
74572817 CGGAATATAA
74572827 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TCGCACAAATGCCTTCGGGTCTTAGC
* ** *
74572867 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
74572907 CCGGATAT
1 CCGGATAT
74572915 CATTCAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:74580782 original size:40 final size:40
Alignment explanation
Indices: 74580737--74580904 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
74580727 CGGAATATAA
74580737 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74580777 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
74580817 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74580857 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
74580897 CCGGATAT
1 CCGGATAT
74580905 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74595533 original size:68 final size:70
Alignment explanation
Indices: 74595461--74595658 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
74595451 ACACCCTGTA
* * * *
74595461 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74595523 ATAAAT
65 ATAAAT
*
74595529 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74595594 ATAAAT
65 ATAAAT
*
74595600 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
74595659 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74595572 original size:41 final size:41
Alignment explanation
Indices: 74595527--74595644 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74595517 TGAAAGATAA
74595527 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74595568 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74595598 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74595639 ATGTAG
1 ATGTAG
74595645 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74595584 original size:71 final size:71
Alignment explanation
Indices: 74595495--74595658 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74595485 GAGATGTATC
74595495 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74595560 AGGACA
66 AGGACA
74595566 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74595631 AGGACA
66 AGGACA
74595637 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74595659 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74612543 original size:31 final size:31
Alignment explanation
Indices: 74612505--74612566 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
74612495 GTAGGGGAGA
74612505 AGGTTTTTACTAATGAATCGATAATCAAAAT
1 AGGTTTTTACTAATGAATCGATAATCAAAAT
74612536 AGGTTTTTACTAATGAATCGATAATCAAAAT
1 AGGTTTTTACTAATGAATCGATAATCAAAAT
74612567 CATTCCATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (31 bp):
AGGTTTTTACTAATGAATCGATAATCAAAAT
Found at i:74618276 original size:30 final size:30
Alignment explanation
Indices: 74618242--74618301 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74618232 ATTTAATACG
*
74618242 AACTTTGGA-AAAATTACATTTTTGCCCCTA
1 AACTTT-GACAAAATTACACTTTTGCCCCTA
* *
74618272 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
74618302 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:74620068 original size:2 final size:2
Alignment explanation
Indices: 74620061--74620085 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
74620051 GGGCTTTAAA
74620061 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
74620086 ATAGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:74622719 original size:48 final size:46
Alignment explanation
Indices: 74622648--74622963 Score: 273
Period size: 48 Copynumber: 6.6 Consensus size: 46
74622638 TAAAGTACCA
* * *
74622648 ATGCCATGTCCCCGACATAGTCTTACA-TGAATCCACATATTATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTG---GCACATATTATCGCCG
* *
74622696 ATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATAT-T-ATCGCCG
* * * *
74622744 ATTCCATTTCCCAGACATGGTCTTACACTGGCACATACATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACAT--ATTATCGCCG
* * * * *
74622792 ATGCCATGTCCCAGACCTGGTCTTACACTTGCACGTACATCATCCCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCAC--ATATTATCGCCG
* *
74622840 AT-CCATGTCCCAGACATGGTCTTACACTGGCATACATTTTATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATATTATCGCCG
* * *
74622887 ATGCCATGTCCCAAATATGGTCTTATGCA-T-GAACATATCTCGGAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTA--CACTGGCACATAT-T---ATCGCCG
74622936 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
74622964 GGAATCTCAT
Statistics
Matches: 219, Mismatches: 32, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
46 12 0.05
47 40 0.18
48 129 0.59
49 31 0.14
50 7 0.03
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATTATCGCCG
Found at i:74622834 original size:96 final size:95
Alignment explanation
Indices: 74622689--74622963 Score: 301
Period size: 95 Copynumber: 2.9 Consensus size: 95
74622679 TCCACATATT
* * *
74622689 ATCGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCGATTCCATTTC
1 ATCGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCACATACATCATCACCGA-TCCATGTC
74622754 CCAGACATGGTCTTACACTGGCACATACATC
65 CCAGACATGGTCTTACACTGGCACATACATC
* * * * *
74622785 ATCGCCAATGCCATGTCCCAGACCTGGTCTTACACTTGCACGTACATCATCCCCGATCCATGTCC
1 ATCGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCACATACATCATCACCGATCCATGTCC
*
74622850 CAGACATGGTCTTACACTGG--CATACATTTT
66 CAGACATGGTCTTACACTGGCACATACA--TC
** * * *
74622880 ATCGCTGATGCCATGTCCCAAATATGGTCTTATGCA-T-GAACATATC-TCGGAT-GCCGATGCC
1 ATCGCCAATGCCATGTCCCAAACATGGTCTTA--CACTGGCACATA-CATC--ATCACCGAT-CC
74622941 ATGTCCCAGACATGGTCTTACAC
60 ATGTCCCAGACATGGTCTTACAC
74622964 GGAATCTCAT
Statistics
Matches: 154, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
93 6 0.04
95 63 0.41
96 56 0.36
97 29 0.19
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (95 bp):
ATCGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCACATACATCATCACCGATCCATGTCC
CAGACATGGTCTTACACTGGCACATACATC
Found at i:74622907 original size:143 final size:143
Alignment explanation
Indices: 74622693--74622963 Score: 334
Period size: 143 Copynumber: 1.9 Consensus size: 143
74622683 CATATTATCG
* * * *
74622693 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCGATTCCATTTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAA
* *
74622758 ACATGGTCTTA-CACTGGCACATA-CATC-ATCGCCAATGCCATGTCCCAGACCTGGTCTTACAC
66 ACATGGTCTTAGCA-T-GAACATATC-TCGAT-GCCAATGCCATGTCCCAGACATGGTCTTACAC
74622820 TTGCACGTACATCATCC
127 TTGCACGTACATCATCC
* * * * * *
74622837 CCGAT-CCATGTCCCAGACATGGTCTTACACTGGCATACATTTTATCGCTGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAA
* *
74622901 ATATGGTCTTATGCATGAACATATCTCGGATGCCGATGCCATGTCCCAGACATGGTCTTACAC
66 ACATGGTCTTA-GCATGAACATATCTC-GATGCCAATGCCATGTCCCAGACATGGTCTTACAC
74622964 GGAATCTCAT
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
143 67 0.62
144 37 0.34
145 4 0.04
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (143 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAA
ACATGGTCTTAGCATGAACATATCTCGATGCCAATGCCATGTCCCAGACATGGTCTTACACTTGC
ACGTACATCATCC
Found at i:74624537 original size:12 final size:12
Alignment explanation
Indices: 74624520--74624547 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
74624510 AGAGTTTGCC
74624520 ATTTGAAATAAT
1 ATTTGAAATAAT
74624532 ATTTGAAATAAT
1 ATTTGAAATAAT
74624544 ATTT
1 ATTT
74624548 TTTATTGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (12 bp):
ATTTGAAATAAT
Found at i:74627272 original size:42 final size:43
Alignment explanation
Indices: 74627213--74627313 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 43
74627203 CGTTTTTTTG
*
74627213 AAAAAAGCGCCGCTAAAGACCACGACTTTTAGCGGCACTTAT-
1 AAAAAAACGCCGCTAAAGACCACGACTTTTAGCGGCACTTATA
* * * *
74627255 AAAAAAATGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTA
1 AAAAAAACGCCGCTAAAGACCACGACTTTTAGCGGCACTTATA
74627298 AAAAAAACGCCGCTAA
1 AAAAAAACGCCGCTAA
74627314 TTTGCCCTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 37 0.71
43 15 0.29
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (43 bp):
AAAAAAACGCCGCTAAAGACCACGACTTTTAGCGGCACTTATA
Found at i:74627631 original size:21 final size:21
Alignment explanation
Indices: 74627607--74627651 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
74627597 TTCTGTTCTG
* *
74627607 CTCCGCCTCCCTCGTTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
74627628 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
74627649 CTC
1 CTC
74627652 GTCTCTAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.56, G:0.20, T:0.24
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:74633176 original size:9 final size:9
Alignment explanation
Indices: 74633162--74633289 Score: 105
Period size: 9 Copynumber: 13.6 Consensus size: 9
74633152 ATGTATTAGT
74633162 TAAGTTATG
1 TAAGTTATG
74633171 TAAGTTGTTATG
1 TAA---GTTATG
74633183 TACA-TTATG
1 TA-AGTTATG
*
74633192 TGAGTTATG
1 TAAGTTATG
*
74633201 TAAATTATG
1 TAAGTTATG
74633210 TAAGTTATG
1 TAAGTTATG
*
74633219 TGAGTTATG
1 TAAGTTATG
74633228 TAAGTTGTTATG
1 TAA---GTTATG
*
74633240 TAAATTATG
1 TAAGTTATG
*
74633249 TAAGTTATA
1 TAAGTTATG
* *
74633258 TGAGTTATT
1 TAAGTTATG
74633267 TAAGTTATG
1 TAAGTTATG
* *
74633276 TAATTTATT
1 TAAGTTATG
74633285 TAAGT
1 TAAGT
74633290 AATGATCAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
8 1 0.01
9 76 0.80
12 17 0.18
13 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:74633238 original size:39 final size:39
Alignment explanation
Indices: 74633195--74633272 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
74633185 CATTATGTGA
*
74633195 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
*
74633234 GTTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
74633273 ATGTAATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (39 bp):
GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
Found at i:74633289 original size:57 final size:57
Alignment explanation
Indices: 74633162--74633289 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
74633152 ATGTATTAGT
* * *
74633162 TAAGTTATGTAAGTTGTTATGTACATTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * * *
74633219 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
74633276 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
74633290 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.48
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:74633892 original size:241 final size:241
Alignment explanation
Indices: 74633469--74633921 Score: 870
Period size: 241 Copynumber: 1.9 Consensus size: 241
74633459 TTAAGGTTAT
*
74633469 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATAAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
74633534 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
74633599 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGCTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGCTGGAGAGAA
74633664 GGTCAGTTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGTTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* *
74633710 ATAAATATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATAAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
74633775 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTTGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
74633840 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGCTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGCTGGAGAGAA
74633905 GGTCAGTTATTGTTGTA
196 GGTCAGTTATTGTTGTA
74633922 CCTAGAACAG
Statistics
Matches: 208, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 208 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATAAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGCTGGAGAGAA
GGTCAGTTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:74638809 original size:81 final size:80
Alignment explanation
Indices: 74638599--74638814 Score: 188
Period size: 81 Copynumber: 2.6 Consensus size: 80
74638589 CAAACCCATA
* * * * * * *
74638599 CATATGAAAACGACGACGTTTACTTTAAAGTACTATGTT-TTTGCGGCGTTTTTTTTAAAACGTC
1 CATAT-AAAACGACGCCG-TTACGTTATACT-CTATGTTCTTTGCGGCGTTTTTTTAAAAAAGCC
* *
74638663 GCTAATCCCCTAAATCTT
63 GCTAATCCCCTAAATATC
* * *
74638681 CATATAAAACGACGCCGTTACGTTATACT-TTTTTTCTTTTTGTGGCGTTTTTTTAAAAAAGCCG
1 CATATAAAACGACGCCGTTACGTTATACTCTATGTTC--TTTGCGGCGTTTTTTTAAAAAAGCCG
* *
74638745 CTACTCTCCTAAATATC
64 CTAATCCCCTAAATATC
* *
74638762 CA-ATTAAAACGACGCTGTTTTCGTTA-ACTGCTATGTTCTTTGCGGCGTTTTTT
1 CATA-TAAAACGACGCCG-TTACGTTATACT-CTATGTTCTTTGCGGCGTTTTTT
74638815 AAATAAACGC
Statistics
Matches: 108, Mismatches: 19, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
78 4 0.04
80 10 0.09
81 77 0.71
82 12 0.11
83 5 0.05
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (80 bp):
CATATAAAACGACGCCGTTACGTTATACTCTATGTTCTTTGCGGCGTTTTTTTAAAAAAGCCGCT
AATCCCCTAAATATC
Found at i:74639201 original size:14 final size:14
Alignment explanation
Indices: 74639184--74639279 Score: 56
Period size: 14 Copynumber: 6.7 Consensus size: 14
74639174 CTCTAAATTA
74639184 TAAAGCCTAAACCT
1 TAAAGCCTAAACCT
*
74639198 TAAACCCT-AA--T
1 TAAAGCCTAAACCT
*
74639209 TAAACCGGCCTAAACCC
1 TAAA---GCCTAAACCT
* *
74639226 TAAAGCATGAACACT
1 TAAAGCCTAAAC-CT
*
74639241 TAAAACCTTAAACCT
1 TAAAGCC-TAAACCT
74639256 TAAA-CCTTAAACCT
1 TAAAGCC-TAAACCT
*
74639270 TAAACCCTAA
1 TAAAGCCTAA
74639280 TCCCCAAACC
Statistics
Matches: 64, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
11 5 0.08
13 2 0.03
14 33 0.52
15 16 0.25
16 4 0.06
17 4 0.06
ACGTcount: A:0.44, C:0.29, G:0.05, T:0.22
Consensus pattern (14 bp):
TAAAGCCTAAACCT
Found at i:74639288 original size:21 final size:21
Alignment explanation
Indices: 74639243--74639289 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
74639233 TGAACACTTA
* **
74639243 AAACCTTAAACCTTAAACCTT
1 AAACCTTAAACCCTAAACCCC
*
74639264 AAACCTTAAACCCTAATCCCC
1 AAACCTTAAACCCTAAACCCC
74639285 AAACC
1 AAACC
74639290 CTAACAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCTTAAACCCTAAACCCC
Found at i:74639689 original size:41 final size:41
Alignment explanation
Indices: 74639633--74639968 Score: 489
Period size: 41 Copynumber: 8.3 Consensus size: 41
74639623 TTATATGACT
*
74639633 TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* * *
74639674 TTTTGCGGCATTTTACCAAACGCGCCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
*
74639715 TTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* *
74639756 TTTAGCGGGGTTTTACCAAAAGCGCCGCTAATGCTAGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* * *
74639797 TTTAGCGGCGTTTTACC-AAA-CGGCGTTAGTGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* * *
74639836 TTTAGCGGCGTTTTACAAAAAGCACCGCTAGTGCTCGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* *
74639877 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTTGGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
* * *
74639918 TTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTC-TGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
74639958 TTTAGCGGCGT
1 TTTAGCGGCGT
74639969 GTAAAAAACG
Statistics
Matches: 265, Mismatches: 28, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 31 0.12
40 19 0.07
41 215 0.81
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTC
Found at i:74639890 original size:121 final size:123
Alignment explanation
Indices: 74639633--74639968 Score: 500
Period size: 121 Copynumber: 2.8 Consensus size: 123
74639623 TTATATGACT
* * * *
74639633 TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTTGCGGCATTTTACCAAACGCG
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTACCAAACGCG
*
74639698 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTC
66 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACACCGCTAATGCTCGGGTC
*
74639756 TTTAGCGGGGTTTTACCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTACCAAACG-G
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTACCAAACGCG
* * *
74639820 -CGTTAGTGCTCGGGTCTTTAGCGGCGTTTTA-CAAAAAGCACCGCTAGTGCTCGGGTC
66 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAA-CACCGCTAATGCTCGGGTC
* * * *
74639877 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTTGGGTCTTTAGCGGCGTTTTACCAAAAGCA
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTACCAAACGCG
* *
74639942 CCGCTAATGCTC-TGTTTTTAGCGGCGT
66 CCGCTAATGCTCGGGTCTTTAGCGGCGT
74639969 GTAAAAAACG
Statistics
Matches: 192, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
120 6 0.03
121 105 0.55
122 14 0.07
123 67 0.35
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (123 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTACCAAACGCG
CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACACCGCTAATGCTCGGGTC
Found at i:74639919 original size:162 final size:164
Alignment explanation
Indices: 74639633--74639952 Score: 491
Period size: 162 Copynumber: 2.0 Consensus size: 164
74639623 TTATATGACT
* * * *
74639633 TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTTGCGGCATTTTACCAAACGCG
1 TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCATTTTACAAAAAGCA
74639698 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTCTTTAGCG
66 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTCTTTAGCG
* *
74639763 GGGTTTTACCAAAAGCGCCGCTAATGCTAGGGTC
131 GCGTTTTACCAAAAGCACCGCTAATGCTAGGGTC
* * * * *
74639797 TTTAGCGGCGTTTTACC-AAA-CGGCGTTAGTGCTCGGGTCTTTAGCGGCGTTTTACAAAAAGCA
1 TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCATTTTACAAAAAGCA
* * * *
74639860 CCGCTAGTGCTCGGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTTGGGTCTTTAGCG
66 CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTCTTTAGCG
74639925 GCGTTTTACCAAAAGCACCGCTAATGCT
131 GCGTTTTACCAAAAGCACCGCTAATGCT
74639953 CTGTTTTTAG
Statistics
Matches: 141, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
162 122 0.87
163 3 0.02
164 16 0.11
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.28
Consensus pattern (164 bp):
TTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGCGGCATTTTACAAAAAGCA
CCGCTAATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCGGGTCTTTAGCG
GCGTTTTACCAAAAGCACCGCTAATGCTAGGGTC
Found at i:74640078 original size:12 final size:12
Alignment explanation
Indices: 74640063--74640088 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74640053 ATTTTTTGGT
74640063 AAAACGCCGCTA
1 AAAACGCCGCTA
74640075 AAAACGCCGCTA
1 AAAACGCCGCTA
74640087 AA
1 AA
74640089 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:74646881 original size:20 final size:21
Alignment explanation
Indices: 74646856--74646898 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
74646846 CCCTTGAAAC
74646856 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
74646876 AGGGCAACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
74646897 AG
1 AG
74646899 TGCTGATGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.23, C:0.26, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:74648362 original size:48 final size:46
Alignment explanation
Indices: 74648299--74648422 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 46
74648289 CAATGCCGAG
* * * *
74648299 GCATGTCCCAAACATGTCTTACACTGGC-TTAAATATCTCGAGGCCAAA
1 GCATGTCCTAGACATGTCTTACACTAGCACT-AATAT-T-GAGGCCAAA
* * * *
74648347 GCATGTCCTAGACATGTCTTACACTAGCACTCATATTGTGGCCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCACTAATATTGAGGCCAAA
*
74648393 GCATGTCCTAGACATGTCTTAGACTAGCAC
1 GCATGTCCTAGACATGTCTTACACTAGCAC
74648423 ATAAATGATC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 35 0.53
47 1 0.02
48 29 0.44
49 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCCTAGACATGTCTTACACTAGCACTAATATTGAGGCCAAA
Found at i:74661293 original size:40 final size:40
Alignment explanation
Indices: 74661200--74661422 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
74661190 CGGATGATAA
* * *
74661200 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-AT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTATAT
* *
74661239 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
74661279 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
74661319 CCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
74661358 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
74661398 CCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74661423 AACTAGTGGC
Statistics
Matches: 164, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 63 0.38
40 101 0.62
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:74661368 original size:79 final size:80
Alignment explanation
Indices: 74661242--74661422 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 80
74661232 GGCTAATTCG
* *
74661242 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
74661307 GAGCTATTATATCCC
66 AAGCTACTATAACCC
* *
74661322 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
74661386 AAGTTACTATAACCG
66 AAGCTACTATAACCC
*
74661401 GGTTAAGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
74661423 AACTAGTGGC
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.64
80 33 0.36
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACCC
Found at i:74661455 original size:79 final size:80
Alignment explanation
Indices: 74661242--74661445 Score: 234
Period size: 79 Copynumber: 2.6 Consensus size: 80
74661232 GGCTAATTCG
* ** *
74661242 GGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGCTAAGTCCCGAAGGCATTTGAACGAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
74661306 CGAGCTATTATATCCC
65 CAAGCTACTATAACCC
** * *
74661322 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
74661386 AAGTTACTATAACCG
66 AAGCTACTATAACCC
* * *
74661401 GGTTAAGTCCCGAAGGCATTTGAACTAGTGGCTATATCC-GGCTAA
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGCTAA
74661446 ACTCCGAAGG
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 73 0.68
80 34 0.32
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACCC
Found at i:74666001 original size:25 final size:25
Alignment explanation
Indices: 74665963--74666012 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
74665953 TGAGGATACA
* *
74665963 GTCTTCCACTAGTGGTATGTAGTGT
1 GTCTTCCACCAGTGGTATGCAGTGT
*
74665988 GTCTTCTACCAGTGGTATGCAGTGT
1 GTCTTCCACCAGTGGTATGCAGTGT
74666013 CCTTCAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (25 bp):
GTCTTCCACCAGTGGTATGCAGTGT
Found at i:74669597 original size:29 final size:29
Alignment explanation
Indices: 74669496--74669589 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
74669486 GTGACGAGAT
74669496 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74669525 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74669554 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
74669583 CGGCACT
1 TGGCACT
74669590 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74669614 original size:58 final size:58
Alignment explanation
Indices: 74669492--74669626 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
74669482 TACGGTGACG
* *
74669492 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
74669549 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
74669607 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
74669627 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:74682155 original size:15 final size:15
Alignment explanation
Indices: 74682135--74682163 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74682125 GGAAAATTGG
74682135 AATCGAGACCCATTA
1 AATCGAGACCCATTA
74682150 AATCGAGACCCATT
1 AATCGAGACCCATT
74682164 GGGTGTCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.21
Consensus pattern (15 bp):
AATCGAGACCCATTA
Found at i:74684647 original size:29 final size:29
Alignment explanation
Indices: 74684615--74684813 Score: 211
Period size: 29 Copynumber: 6.6 Consensus size: 29
74684605 GATTTAAGCC
* *** *
74684615 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
74684644 CGCACACTTAGTGCCATATATTTCCAGCAT
1 CGCACACTTAGTGCCATATATTTCCAGC-T
*
74684674 -GCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
*
74684702 CGCACACTTAGTGCCATATATTTCATATATTTCCAGCA
1 CGCACACTTAGTG-C--------CATATATTTCCAGCT
* *
74684740 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
*
74684769 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
74684798 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
74684814 ATCTCGTCAC
Statistics
Matches: 151, Mismatches: 8, Indels: 22
0.83 0.04 0.12
Matches are distributed among these distances:
29 121 0.80
30 2 0.01
37 1 0.01
38 27 0.18
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCT
Found at i:74684659 original size:58 final size:58
Alignment explanation
Indices: 74684589--74684813 Score: 182
Period size: 58 Copynumber: 3.7 Consensus size: 58
74684579 TCGATTTCTT
* * * * *
74684589 ACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGCTCGC
1 ACACTTAGTGCCAT-AGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCACGC
* * * * * *
74684647 ACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGC
1 ACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCACGC
* * * * *
74684705 ACACTTAGTGCCATATATTTCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAC
1 ACACTTAGTGCCATAGATTTC----A-----AGCACGCACACATAGTGCCATACACTTCCAGCAC
74684770 GC
57 GC
* * *
74684772 ACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 ACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCA
74684814 ATCTCGTCAC
Statistics
Matches: 143, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
57 4 0.03
58 82 0.57
67 57 0.40
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (58 bp):
ACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCACGC
Found at i:74684738 original size:38 final size:38
Alignment explanation
Indices: 74684687--74684763 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
74684677 CACTTAGTGC
74684687 CATATATTTCCAGCACGCACACTTAGTGCCATATATTT
1 CATATATTTCCAGCACGCACACTTAGTGCCATATATTT
*
74684725 CATATATTTCCAGCATGCACACTTAGTGCCATATATTT
1 CATATATTTCCAGCACGCACACTTAGTGCCATATATTT
74684763 C
1 C
74684764 CAGCACGCAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (38 bp):
CATATATTTCCAGCACGCACACTTAGTGCCATATATTT
Found at i:74684766 original size:67 final size:67
Alignment explanation
Indices: 74684658--74684792 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
74684648 CACTTAGTGC
74684658 CATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATAT
1 CATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATAT
74684723 TT
66 TT
74684725 CATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATAT
1 CATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATAT
74684790 TT
66 TT
74684792 C
1 C
74684793 CAGCACGCAC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (67 bp):
CATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATAT
TT
Found at i:74695557 original size:13 final size:13
Alignment explanation
Indices: 74695539--74695564 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74695529 ATTAAATGGG
74695539 GAGAAAATATTCC
1 GAGAAAATATTCC
74695552 GAGAAAATATTCC
1 GAGAAAATATTCC
74695565 CTTTTCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
GAGAAAATATTCC
Found at i:74696616 original size:21 final size:21
Alignment explanation
Indices: 74696577--74696616 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74696567 CATTTAAGAA
* *
74696577 GGGTGTCACGATATTCAAAAG
1 GGGTGTCACGACATGCAAAAG
74696598 GGGTGTCACGACATGCAAA
1 GGGTGTCACGACATGCAAA
74696617 CCAGATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (21 bp):
GGGTGTCACGACATGCAAAAG
Found at i:74696976 original size:43 final size:43
Alignment explanation
Indices: 74696920--74697005 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
74696910 TCAGTCTAGG
74696920 AATAAATTTATGTTTACGTATCTTTGCATCGTGTTAAGGTCTA
1 AATAAATTTATGTTTACGTATCTTTGCATCGTGTTAAGGTCTA
74696963 AATAAATTTATGTTTACGTATCTTTGCATCGTGTTAAGGTCTA
1 AATAAATTTATGTTTACGTATCTTTGCATCGTGTTAAGGTCTA
74697006 CTTCTTTCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (43 bp):
AATAAATTTATGTTTACGTATCTTTGCATCGTGTTAAGGTCTA
Found at i:74697607 original size:14 final size:14
Alignment explanation
Indices: 74697588--74697617 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
74697578 TCCGAACGAA
74697588 CATGAAAAAGTTCC
1 CATGAAAAAGTTCC
74697602 CATGAAAAAGTTCC
1 CATGAAAAAGTTCC
74697616 CA
1 CA
74697618 ATTTGTTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.20
Consensus pattern (14 bp):
CATGAAAAAGTTCC
Found at i:74698257 original size:2 final size:2
Alignment explanation
Indices: 74698250--74698277 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74698240 ATAGCCCAAA
74698250 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74698278 TGTCCCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74702158 original size:24 final size:24
Alignment explanation
Indices: 74702131--74702176 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
74702121 ATGTTATTAC
74702131 TTCA-TTTTCCATCTATTTTATTTT
1 TTCACTTTT-CATCTATTTTATTTT
*
74702155 TTCACTTTTCATTTATTTTATT
1 TTCACTTTTCATCTATTTTATT
74702177 ACTTAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (24 bp):
TTCACTTTTCATCTATTTTATTTT
Found at i:74714747 original size:55 final size:55
Alignment explanation
Indices: 74714688--74714791 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 55
74714678 CTTAGGGTCG
* * * *
74714688 TGTCGCAGGCCATCTGTCAGATCGTGTGTGTATCCAAAATAAGGTCACATAGTCA
1 TGTCGCAAGCCATCTGCCAAATCATGTGTGTATCCAAAATAAGGTCACATAGTCA
* * *
74714743 TGTCGCAAGCCATGTGCCAAATCATGTTTGTATTCAAAATAAGGTCACA
1 TGTCGCAAGCCATCTGCCAAATCATGTGTGTATCCAAAATAAGGTCACA
74714792 CGTCCATATC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (55 bp):
TGTCGCAAGCCATCTGCCAAATCATGTGTGTATCCAAAATAAGGTCACATAGTCA
Found at i:74719812 original size:121 final size:121
Alignment explanation
Indices: 74719596--74719814 Score: 273
Period size: 121 Copynumber: 1.8 Consensus size: 121
74719586 GAATTATGTG
** * * * **
74719596 AATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCTACCCGGGCT
1 AATGAAATATGGATGTCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
* * **
74719661 AAGTCCCGAAGGCGAATATGCTTGTGATTATATTGCGTTTGAGCCTTAGTAACGAA
66 AAGTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAA
* *
74719717 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGT-CATGAGAAATTGAATGATATCCGGG
1 AATGAAATATGGATGT-CAATGATTATTGAT-TATGTGTGCATGAGAAATTGAATGATACCCGGG
74719781 CTAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
64 CTAAGTCCCGAAGACGAA-TATGCTGGAAATTATAT
74719815 CCGGGTTAAG
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
120 2 0.02
121 37 0.45
122 36 0.44
123 7 0.09
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (121 bp):
AATGAAATATGGATGTCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
AAGTCCCGAAGACGAATATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGAA
Found at i:74719838 original size:40 final size:40
Alignment explanation
Indices: 74719772--74719922 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74719762 AAATTGAATG
* *
74719772 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
74719811 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
74719851 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
74719891 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74719923 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:74719905 original size:80 final size:79
Alignment explanation
Indices: 74719772--74719922 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
74719762 AAATTGAATG
*
74719772 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
74719837 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
74719851 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
74719914 CATTTGTGC
63 CAATTGTGC
74719923 ACATGGTTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:74727840 original size:40 final size:40
Alignment explanation
Indices: 74727774--74727924 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74727764 AAATTGAATG
* *
74727774 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
74727813 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
74727853 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
74727893 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74727925 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:74727907 original size:80 final size:79
Alignment explanation
Indices: 74727774--74727924 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
74727764 AAATTGAATG
*
74727774 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
74727839 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
74727853 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
74727916 CATTTGTGC
63 CAATTGTGC
74727925 ACATGGTTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:74737237 original size:40 final size:40
Alignment explanation
Indices: 74737129--74737298 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
74737119 CGGGATTTAA
* * * * *
74737129 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74737169 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74737209 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74737249 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74737289 CCGGATATAT
1 CCGGATATAT
74737299 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74745326 original size:40 final size:40
Alignment explanation
Indices: 74745218--74745467 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74745208 CGGGATTTAA
* * * * *
74745218 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74745258 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74745298 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74745338 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74745378 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74745418 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74745458 CCGGATATAT
1 CCGGATATAT
74745468 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74748952 original size:43 final size:43
Alignment explanation
Indices: 74748899--74749019 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 43
74748889 TTGAGATCTA
* *
74748899 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* *
74748942 ATTACGTGTAAGACAATGTCTGGGACATTGGCATCGTATTATG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* * * *
74748985 ATTTCATGTAAGACCCTGTCTAGGACAGTGGCATC
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATC
74749020 AATATGTGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
Found at i:74752051 original size:26 final size:26
Alignment explanation
Indices: 74752022--74752077 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
74752012 TGATAAAAAT
*
74752022 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
74752048 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
74752074 TGAT
1 TGAT
74752078 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:74760550 original size:26 final size:26
Alignment explanation
Indices: 74760521--74760573 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74760511 TTTACAGTTT
74760521 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74760547 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74760573 T
1 T
74760574 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74769993 original size:40 final size:40
Alignment explanation
Indices: 74769936--74770144 Score: 280
Period size: 40 Copynumber: 5.2 Consensus size: 40
74769926 CTAACGGGGT
* * * *
74769936 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
74769976 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
74770016 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
74770056 TAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
74770096 TAAGT-CCGAAGACATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
74770135 TAAGACCCGA
1 TAAGTCCCGA
74770145 CGGCCTTGTG
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.23
40 119 0.77
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:74778668 original size:45 final size:44
Alignment explanation
Indices: 74778560--74778697 Score: 165
Period size: 45 Copynumber: 3.2 Consensus size: 44
74778550 ATTCTATCTC
* * *
74778560 ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAATC-GA-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCACAT
* * * *
74778602 ATA-CCATGCCGATGTCTCAGACATGGTCTTACACGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
*
74778646 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
74778691 ATATCGA
1 ATATCGA
74778698 AATCCTATGG
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
41 27 0.34
42 6 0.08
43 1 0.01
44 3 0.04
45 42 0.53
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCACAT
Found at i:74778799 original size:2 final size:2
Alignment explanation
Indices: 74778792--74778825 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74778782 CTGCTAACTC
74778792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74778826 TCACATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74779291 original size:15 final size:15
Alignment explanation
Indices: 74779268--74779298 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74779258 TCAAAAATTC
74779268 CAATACAAAACATAT
1 CAATACAAAACATAT
*
74779283 CAATCCAAAACATAT
1 CAATACAAAACATAT
74779298 C
1 C
74779299 TTTCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:74779829 original size:14 final size:15
Alignment explanation
Indices: 74779812--74779840 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74779802 TCACGAAAAT
74779812 TTCACACAT-ATAAA
1 TTCACACATAATAAA
74779826 TTCACACATAATAAA
1 TTCACACATAATAAA
74779841 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:74785541 original size:47 final size:47
Alignment explanation
Indices: 74785456--74785582 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
74785446 CAAAGTTGAA
* *
74785456 AAGTACCTATACCATGGCCTGTAGCCAAATCAATGTAACT-TACCTCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCT-CCTCG
* * * ** *
74785503 GAGTACCTATACCATGGCCCGTAACCAAGTCAAAGTAACTCTTTTCT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCG
*
74785550 AAATACCTATACCATGGCCCGTAGCCAAATCAA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAA
74785583 GGTATTAATC
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 66 0.99
48 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCG
Found at i:74787896 original size:18 final size:17
Alignment explanation
Indices: 74787875--74787919 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
74787865 TTTTAGTCCC
74787875 ATTTTTTATTTGTTTCTT
1 ATTTTTTATTTGTTT-TT
*
74787893 ATTTTAATATTTGTTTTT
1 ATTTT-TTATTTGTTTTT
74787911 ATGTTTTTA
1 AT-TTTTTA
74787920 AATGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTGTTTTT
Found at i:74788406 original size:48 final size:48
Alignment explanation
Indices: 74788334--74788466 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
74788324 GATTAATAAG
* * *
74788334 AGCCAGCGTAAGACCATGTTTGGGACATGGCATCAGCATTGATA-TGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATACTG-T
*
74788382 AGCCAGTGTAAAACCATGTCTGGGACATGGCATC-GACATCGATATCTGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCGATA-CTGT
* * * *
74788431 -GCCAGTATAAGACCATATCTGGGATATGACATCAGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
74788467 CTCGGTATGT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
47 1 0.01
48 67 0.93
49 2 0.03
50 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATACTGT
Found at i:74788605 original size:48 final size:47
Alignment explanation
Indices: 74788550--74788682 Score: 141
Period size: 48 Copynumber: 2.9 Consensus size: 47
74788540 AGGGACATGC
74788550 CACCGATGTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCATCAG
1 CACCGATGTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCATC-G
* ** * * *
74788598 CACCGATGTGAGATTTCGTATAAGACCATATCTGGGATATGGCATCG
1 CACCGATGTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCATCG
* * *
74788645 -A--TATGT-A-GACCCATGTAAGACCATGTCTGGGACATGGC
1 CACCGATGTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGC
74788683 TTTGGCATTC
Statistics
Matches: 70, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 23 0.33
43 1 0.01
44 4 0.06
46 1 0.01
47 1 0.01
48 40 0.57
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (47 bp):
CACCGATGTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCATCG
Found at i:74788614 original size:90 final size:90
Alignment explanation
Indices: 74788515--74788682 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
74788505 TGGTATTGAG
* * * *
74788515 GTGAAATTTCGTATAAAACCATGTCAGGGACATGCCACCGATGTG-AGGTCCCGTGTAAGACCAT
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTA-GACCCATGTAAGACCAT
74788579 GTCTGGGACATGGCATCAGCACCGAT
65 GTCTGGGACATGGCATCAGCACCGAT
* * * * * *
74788605 GTGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAGACCATG
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
74788670 TCTGGGACATGGC
66 TCTGGGACATGGC
74788683 TTTGGCATTC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 66 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (90 bp):
GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
TCTGGGACATGGCATCAGCACCGAT
Found at i:74788682 original size:42 final size:42
Alignment explanation
Indices: 74788532--74788682 Score: 124
Period size: 42 Copynumber: 3.5 Consensus size: 42
74788522 TTCGTATAAA
* * * * *
74788532 ACCATGTCAGGGACATGCCACCGATGTG-AGGTCCCGTGTAAG
1 ACCATGTCTGGGACATGGCATCGATATGTA-GACCCGTGTAAG
* ** *
74788574 ACCATGTCTGGGACATGGCATCAGCACCGATGTGAGATTTCGTATAAG
1 ACCATGTCTGGGACATGGCATC-G-A--TATGT-AGA-CCCGTGTAAG
* * *
74788622 ACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAG
1 ACCATGTCTGGGACATGGCATCGATATGTAGACCCGTGTAAG
74788664 ACCATGTCTGGGACATGGC
1 ACCATGTCTGGGACATGGC
74788683 TTTGGCATTC
Statistics
Matches: 84, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
42 42 0.50
43 4 0.05
44 5 0.06
46 3 0.04
47 2 0.02
48 28 0.33
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (42 bp):
ACCATGTCTGGGACATGGCATCGATATGTAGACCCGTGTAAG
Found at i:74800558 original size:20 final size:20
Alignment explanation
Indices: 74800533--74800577 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
74800523 AGGGACTAAA
*
74800533 ATGAAAAGTTGTA-AAATTTG
1 ATGAAAAATT-TAGAAATTTG
*
74800553 ATGAAAAATTTAGAAATTTT
1 ATGAAAAATTTAGAAATTTG
74800573 ATGAA
1 ATGAA
74800578 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTTAGAAATTTG
Found at i:74801556 original size:61 final size:61
Alignment explanation
Indices: 74801461--74801584 Score: 239
Period size: 61 Copynumber: 2.0 Consensus size: 61
74801451 TAATGTCTTG
74801461 AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
1 AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
*
74801522 AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAGGATTTTGGAGACT
1 AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
74801583 AA
1 AA
74801585 CATGTTTGAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.35
Consensus pattern (61 bp):
AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
Found at i:74808864 original size:19 final size:19
Alignment explanation
Indices: 74808837--74808877 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
74808827 AATTCTCATA
74808837 TTTGATTATCTAATTTAAT
1 TTTGATTATCTAATTTAAT
* * *
74808856 TTTGGTTATTTAATTTTAT
1 TTTGATTATCTAATTTAAT
74808875 TTT
1 TTT
74808878 TCACATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (19 bp):
TTTGATTATCTAATTTAAT
Found at i:74811854 original size:42 final size:42
Alignment explanation
Indices: 74811749--74811902 Score: 150
Period size: 42 Copynumber: 3.6 Consensus size: 42
74811739 TACCATACCA
* * ** * *
74811749 ATGCCATATCCCAGATATGGTGTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACA-CCAAGTCTCATATAG
* * ** *
74811791 ATACCAATAGCCCAGCTATGGT-TATACACCAAGTCTCATATTG
1 ATGCC-ATATCCCAAATATGGTCT-TACACCAAGTCTCATATAG
*
74811834 ATGCCATATCCCAAATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAAATATGGTCTTACACCAAGTCTCATATAG
*
74811876 ATGCCATATCCCATATATGGTCTTACA
1 ATGCCATATCCCAAATATGGTCTTACA
74811903 TATAGCCTTA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 63 0.67
43 31 0.33
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACCAAGTCTCATATAG
Found at i:74812331 original size:20 final size:21
Alignment explanation
Indices: 74812306--74812345 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74812296 GCTCTAGAAC
74812306 AGGGC-ACACGCCCGTGTAGA
1 AGGGCAACACGCCCGTGTAGA
*
74812326 AGGGCAACATGCCCGTGTAG
1 AGGGCAACACGCCCGTGTAG
74812346 CCATTAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTAGA
Found at i:74813559 original size:46 final size:46
Alignment explanation
Indices: 74813508--74813676 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 46
74813498 ATCTCGTAGT
74813508 CGATGCATGTCCCAAACATGTCTTACACTGGCT-TATATCTCAAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTATA-ATCTCAAGGC
* ** * *
74813554 CGATGCATGTCCCAAACATGTCTTACACTAGC-ACTCGTCTCAATGT
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTA-TAATCTCAAGGC
* * *
74813600 CGATACCATGTCCCAGACATGGTCTTACACTGGTTCTCATAATGT---GGC
1 CGAT-GCATGTCCCAAACAT-GTCTTACACTGG--CT-ATAATCTCAAGGC
*
74813648 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
74813677 AGCTCACGCA
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
46 52 0.51
47 28 0.28
48 16 0.16
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTATAATCTCAAGGC
Found at i:74813841 original size:26 final size:27
Alignment explanation
Indices: 74813786--74813843 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
74813776 TATTTCCATA
*
74813786 ATCAA-GCAATTCATACTATAATAATT
1 ATCAATGCAATTCAAACTATAATAATT
74813812 -TCAATGCAATTCAAACGTAT-AT-ATT
1 ATCAATGCAATTCAAAC-TATAATAATT
74813837 ATCAATG
1 ATCAATG
74813844 TAGTTGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 7 0.25
26 18 0.64
27 3 0.11
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (27 bp):
ATCAATGCAATTCAAACTATAATAATT
Found at i:74821710 original size:40 final size:40
Alignment explanation
Indices: 74821631--74821788 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
74821621 TTCGAATGAT
* * * *
74821631 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
74821671 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
74821711 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
74821751 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
74821789 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:74821809 original size:80 final size:80
Alignment explanation
Indices: 74821631--74821818 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
74821621 TTCGAATGAT
* *
74821631 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
74821696 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
74821711 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
74821772 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
74821792 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
74821819 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:74829775 original size:40 final size:40
Alignment explanation
Indices: 74829696--74829853 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
74829686 TTCGAATGAT
* * * *
74829696 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
74829736 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
74829776 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
74829816 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
74829854 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:74829874 original size:80 final size:80
Alignment explanation
Indices: 74829696--74829883 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
74829686 TTCGAATGAT
* *
74829696 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
74829761 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
74829776 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
74829837 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
74829857 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
74829884 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:74833395 original size:21 final size:21
Alignment explanation
Indices: 74833369--74833424 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
74833359 TACACGGCCT
*
74833369 GACCACACGGGTGTGTCCCTA
1 GACCACACGGGTGTGTCCATA
* * *
74833390 GACCACACTGGCGTGTCTATA
1 GACCACACGGGTGTGTCCATA
74833411 GACCACACGGGTGT
1 GACCACACGGGTGT
74833425 AACACCCCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (21 bp):
GACCACACGGGTGTGTCCATA
Found at i:74835409 original size:2 final size:2
Alignment explanation
Indices: 74835402--74835428 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74835392 CAACATAATC
74835402 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
74835429 AATACCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74841403 original size:2 final size:2
Alignment explanation
Indices: 74841385--74841435 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
74841375 AGACATTCGG
* *
74841385 AT AT AC AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74841427 AT AT AT AT A
1 AT AT AT AT A
74841436 GTTAAATTCG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:74842113 original size:40 final size:40
Alignment explanation
Indices: 74842058--74842250 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
74842048 GTATGATATT
74842058 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
*
74842098 TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
*
74842138 TAGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
74842178 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* * * *
74842218 AGGAATGGTATCCGGG-TTAATGACCCGTAGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
74842251 TGCGCCAGTA
Statistics
Matches: 141, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.11
40 126 0.89
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:74857512 original size:47 final size:47
Alignment explanation
Indices: 74857404--74857577 Score: 135
Period size: 47 Copynumber: 3.7 Consensus size: 47
74857394 CGGGTAGGGT
* *
74857404 GCCGATGCCATATCCCAGACATGGTCTTACACTAACTATCATTTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAACTATCATCTCGTA
* * * *
74857452 GTCGATG-CATGTCCCGGACATGTCTTACACTAGC-ACTCGTCTCGATA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAACTA-TCATCTCG-TA
* * * * *
74857499 -CCGATGCCATGTCCCAGACAAAGTCTTACAC-AGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGAC-ATGTCTTACACTA-ACTATCAT-CTCGTA
* *
74857546 GTCGATG-CATGTCCCAGACATGTCATACACTA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTA
74857578 GCCCACAATA
Statistics
Matches: 101, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
45 1 0.01
46 32 0.32
47 40 0.40
48 27 0.27
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAACTATCATCTCGTA
Found at i:74873874 original size:50 final size:48
Alignment explanation
Indices: 74873627--74873943 Score: 202
Period size: 46 Copynumber: 6.7 Consensus size: 48
74873617 TGTGTGAGCT
* * * *
74873627 AGTGTAAGA-CAT-TCTGGGACAT-GTATCGGCCAC-AATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGAAAATGATAGCC
* * * *
74873672 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGTCAA-G-T-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGA--AAATGATAGCC
* * * *
74873720 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCG-AGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGAAAATGAT-AGCC
* * * *
74873766 AGTGTAAGA-CATGTCTGGGACAT-GCATCTGCTGCG-AGATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGAAAATGATAGCC
*** *
74873810 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGTTATG-TGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAAATGAT-AG--CC
* *
74873860 AGTGTAAGACCATGT-TCGGGACATGGCATCGGCCTCGAAAATGATAGCC
1 AGTGTAAGACCATGTCT-GGGACATGGCATCAG-CACGAAAATGATAGCC
74873909 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC
74873944 CTTACCCATT
Statistics
Matches: 221, Mismatches: 29, Indels: 41
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 25 0.11
46 64 0.29
47 24 0.11
48 21 0.10
49 32 0.14
50 31 0.14
51 9 0.04
52 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAAATGATAGCC
Found at i:74876531 original size:15 final size:15
Alignment explanation
Indices: 74876511--74876544 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
74876501 AATGGATTTG
74876511 CTTTAAACCAATCTT
1 CTTTAAACCAATCTT
74876526 CTTTAAACCAATCTT
1 CTTTAAACCAATCTT
74876541 CTTT
1 CTTT
74876545 CTTTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (15 bp):
CTTTAAACCAATCTT
Found at i:74878477 original size:48 final size:48
Alignment explanation
Indices: 74878421--74878787 Score: 320
Period size: 48 Copynumber: 7.6 Consensus size: 48
74878411 TATGTGTGCT
** *
74878421 AGTGTAAGATTATGTCTAGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* **** * * *
74878469 AGTGTAAGACCATGTTTGGGACATGGCATCGGTGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CCACATTATGAGAGCC
* * *
74878517 AGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * * * * *
74878565 AATGTAAGACCATGTCTAGGACATGACATCAG-CA-TTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGAGAGCC
* *
74878613 AGTGTAAGACCATGTTTGGGACATGGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
74878661 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCC
* *
74878709 AGTGTAAGAGCATGTCTGGGACATGGTATCGGCCTCGACA-TAT--GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-C-C-ACATTATGAGAGCC
* *
74878757 AGTTTAAGACCATGTCTGGGAAATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
74878788 ACAAATTACC
Statistics
Matches: 251, Mismatches: 53, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
45 5 0.02
46 1 0.00
47 4 0.02
48 231 0.92
49 4 0.02
50 2 0.01
53 1 0.00
54 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:74878572 original size:96 final size:96
Alignment explanation
Indices: 74878408--74878787 Score: 505
Period size: 96 Copynumber: 4.0 Consensus size: 96
74878398 GACAATTGGG
*
74878408 TGATATGTGTGCTAGTGTAAGATTATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
* **
74878473 TAAGACCATGTTTGGGACATGGCATCGGTGT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* *
74878504 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAATG
1 TGATATGTGTGCTAGTGTAAGATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
* * *
74878569 TAAGACCATGTCTAGGACATGACATCAGCAT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
74878600 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
74878665 TAAGACCATGTCTGGGACATGGCATCGACAT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * *
74878696 TGAGACGAGAGCTAGTGTAAGAGCATGTCTGGGACATGGTATCGGCCTCGACA-TAT--GAGCCA
1 TGATATGTGTGCTAGTGTAAGATCATGTCTAGGACATGGCATCGG-C-C-ACATTATGAGAGCCA
* *
74878758 GTTTAAGACCATGTCTGGGAAATGGCATCG
63 GTGTAAGACCATGTCTGGGACATGGCATCG
74878788 ACAAATTACC
Statistics
Matches: 252, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
96 244 0.97
97 1 0.00
98 4 0.02
99 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:74881723 original size:67 final size:68
Alignment explanation
Indices: 74881643--74881797 Score: 158
Period size: 67 Copynumber: 2.2 Consensus size: 68
74881633 CATCATGTGT
* * * * *
74881643 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGA-T-ACG-GATGTATC-C
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATTCAAGTGAAGGA-CAC
74881703 CATGTAG
62 CATGTAG
*
74881710 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGTGTGATT-CAAGTGAAGGACACC
74881775 ATGTAG
63 ATGTAG
74881781 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
74881798 CAAATCAGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
67 31 0.42
68 6 0.08
69 9 0.12
70 3 0.04
71 25 0.34
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGATTCAAGTGAAGGACACCATG
TAG
Found at i:74891033 original size:87 final size:86
Alignment explanation
Indices: 74890879--74891042 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 86
74890869 TACATGCATA
* ** * *
74890879 AGGTTGAGTTCTTACCCTTAATGAATTCATATCCTAGGGTTTGGGCGGTCCTATTGAGACGAACT
1 AGGTTGAGTTCTTACCCTTAATGAATTCATATCCAAAAGTTTGGGCGGTCCTATTGACACAAACT
*
74890944 TGATGAATTCACCAACATGTG
66 TGATGAACTCACCAACATGTG
* *
74890965 AGGTTGAGTTTCTTACTCC-TAATGAGTTCATATCCAAAAGTTTGGGTGGTCCTATTGACACAAA
1 AGGTTGAG-TTCTTAC-CCTTAATGAATTCATATCCAAAAGTTTGGGCGGTCCTATTGACACAAA
74891029 CTTGATGAACTCAC
64 CTTGATGAACTCAC
74891043 TGAATTTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
86 8 0.12
87 58 0.85
88 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (86 bp):
AGGTTGAGTTCTTACCCTTAATGAATTCATATCCAAAAGTTTGGGCGGTCCTATTGACACAAACT
TGATGAACTCACCAACATGTG
Found at i:74891531 original size:11 final size:11
Alignment explanation
Indices: 74891517--74891549 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
74891507 CATTGGTTGA
74891517 GAAAAGGTTTC
1 GAAAAGGTTTC
74891528 GAAAAGGTTTC
1 GAAAAGGTTTC
74891539 GAAAAGAGTTT
1 GAAAAG-GTTT
74891550 AAATATAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.27
Consensus pattern (11 bp):
GAAAAGGTTTC
Found at i:74892014 original size:93 final size:93
Alignment explanation
Indices: 74891850--74892037 Score: 268
Period size: 93 Copynumber: 2.0 Consensus size: 93
74891840 TCTCCTCATT
* * * * * *
74891850 TTACACTACAAGGAAAACAACAATCTTTTATCCTACAGCTCACCTATTCCTTTTTTAGTTTTTTC
1 TTACACAACAAGGAAAACAACAATCTTTTATCCCACAGCTCACATACTCCTTTTTCAGTTTTTCC
*
74891915 GTTTCCTTTTTGAGAACAGCAATACCAC
66 GATTCCTTTTTGAGAACAGCAATACCAC
* *
74891943 TTACACAATAAGGAAAACAACAATCTTTTATCCCACAGCTCACATGCTCCTTTTTCAGTTTTTCC
1 TTACACAACAAGGAAAACAACAATCTTTTATCCCACAGCTCACATACTCCTTTTTCAGTTTTTCC
* * *
74892008 GATTCCTTTTTTAGAAGAGCAATATCAC
66 GATTCCTTTTTGAGAACAGCAATACCAC
74892036 TT
1 TT
74892038 GTGTTCCACC
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 83 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (93 bp):
TTACACAACAAGGAAAACAACAATCTTTTATCCCACAGCTCACATACTCCTTTTTCAGTTTTTCC
GATTCCTTTTTGAGAACAGCAATACCAC
Found at i:74892328 original size:13 final size:13
Alignment explanation
Indices: 74892310--74892386 Score: 84
Period size: 13 Copynumber: 5.9 Consensus size: 13
74892300 AGTTCTTCAT
74892310 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
74892323 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
74892336 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
74892349 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
** *
74892362 TATTTTTGAGAAG
1 TGCTTTTGAAAAG
*
74892375 TGCTTTGGAAAA
1 TGCTTTTGAAAA
74892387 ATTTAAGTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
12 2 0.04
13 48 0.94
14 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:74892353 original size:39 final size:39
Alignment explanation
Indices: 74892310--74892386 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
74892300 AGTTCTTCAT
*
74892310 TGCTTTTGAA-AAGTGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTT-AAGAAGTACTTTTGAAAAGTGCTGTGGAAAAG
* * *
74892349 TGCTTTTAAGAAGTATTTTTGAGAAGTGCTTTGGAAAA
1 TGCTTTTAAGAAGTACTTTTGAAAAGTGCTGTGGAAAA
74892387 ATTTAAGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.06
39 31 0.94
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (39 bp):
TGCTTTTAAGAAGTACTTTTGAAAAGTGCTGTGGAAAAG
Found at i:74909939 original size:17 final size:18
Alignment explanation
Indices: 74909917--74909951 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74909907 TCACATTGAA
*
74909917 GTGTTTT-AGTGAAAACC
1 GTGTTTTCACTGAAAACC
74909934 GTGTTTTCACTGAAAACC
1 GTGTTTTCACTGAAAACC
74909952 CTTCTTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (18 bp):
GTGTTTTCACTGAAAACC
Found at i:74911048 original size:28 final size:28
Alignment explanation
Indices: 74911016--74911129 Score: 131
Period size: 28 Copynumber: 4.0 Consensus size: 28
74911006 TACCTGTATC
* *
74911016 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
74911044 TGGCCCACTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
74911073 TGGCCCATTAGGCTCAATCACATTTATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
74911101 TGGCTCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
74911129 T
1 T
74911130 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.01
28 48 0.67
29 22 0.31
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:74911070 original size:57 final size:57
Alignment explanation
Indices: 74911007--74911116 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
74910997 AATTTCACAT
* *
74911007 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCACTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCACTAGGCCCAAATC
* * * * *
74911064 ACCTGTATATGGCCCATTAGGCTCAATCACATTTATATGGCTCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCACTAGGCCCA
74911117 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCACTAGGCCCAAATC
Found at i:74915415 original size:29 final size:29
Alignment explanation
Indices: 74915358--74915457 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
74915348 TACCTATATC
* * *
74915358 TGGCCCATTAAG-CCAAATCATAT-TCATA
1 TGGCCCATTAGGCCCAAATAACATGT-ATA
* *
74915386 TGGCCCACTAGGCCCAAATAACCTGTATA
1 TGGCCCATTAGGCCCAAATAACATGTATA
* *
74915415 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATAACATGTATA
74915444 TGGCCCATTAGGCC
1 TGGCCCATTAGGCC
74915458 TATCAAAATT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 10 0.16
29 50 0.82
30 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATAACATGTATA
Found at i:74915447 original size:58 final size:57
Alignment explanation
Indices: 74915349--74915457 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 57
74915339 CATTTCACAT
* *
74915349 ACCTATATCTGGCCCATTAAGCCAAATCATATTCATATGGCCCACTAGGCCCAAATA
1 ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCACTAGGCCCAAATA
* * * *
74915406 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAGGCC
1 ACCTATATATGGCCCATTAAG-CCAAATCACATTCATATGGCCCACTAGGCC
74915458 TATCAAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 18 0.40
58 27 0.60
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCACTAGGCCCAAATA
Found at i:74915704 original size:8 final size:8
Alignment explanation
Indices: 74915691--74915721 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
74915681 ACTTTGAGCT
74915691 TTTCGGCA
1 TTTCGGCA
74915699 TTTCGGCA
1 TTTCGGCA
*
74915707 TTTCGGTA
1 TTTCGGCA
74915715 TTTCGGC
1 TTTCGGC
74915722 TTTTGCCGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.26, T:0.42
Consensus pattern (8 bp):
TTTCGGCA
Found at i:74916828 original size:16 final size:17
Alignment explanation
Indices: 74916794--74916832 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
74916784 ATAATGAAAG
74916794 TTTGGGATTTCGAGATT
1 TTTGGGATTTCGAGATT
* *
74916811 TTTGGG-TTTCGGGTTT
1 TTTGGGATTTCGAGATT
74916827 TTTGGG
1 TTTGGG
74916833 GCGTTACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.08, C:0.05, G:0.36, T:0.51
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:74917665 original size:46 final size:44
Alignment explanation
Indices: 74917467--74917687 Score: 165
Period size: 48 Copynumber: 4.8 Consensus size: 44
74917457 GGGATAAGTT
* * *
74917467 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCCATCATCATTGAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CA-CATC-TTCAA
* * * * **
74917516 GCCGTTGCATGTCCCAGACATGTCTTACACCAGCTCTCGCATATTCGT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG----CACATCTTCAA
** * **
74917564 GTAGATGCATGTCCCAAACATGTCTTACACTAGCACATCTTGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTTCAA
* * *
74917608 GCCAATGCATGTCCCAGACATGTCTTACATTGGCTTACATC-TCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTTCAA
*
74917653 GGCCGATGCATGTCCCAGACATGTCTCACACTAGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC
74917688 GCTCGTCTCA
Statistics
Matches: 136, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
44 34 0.25
45 2 0.01
46 35 0.26
47 10 0.07
48 45 0.33
49 9 0.07
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTTCAA
Found at i:74917697 original size:46 final size:45
Alignment explanation
Indices: 74917467--74917781 Score: 146
Period size: 48 Copynumber: 6.8 Consensus size: 45
74917457 GGGATAAGTT
* * *
74917467 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGC-CATCATCATTGAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCGCATC-TC--TCAA
* * * **
74917516 GCCGTTGCATGTCCCAGACATGTCTTACACCAGCTCTCGCATAT-TCGT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG----CGCATCTCTCAA
** * * **
74917564 GTAGATGCATGTCCCAAACATGTCTTACACTAGCACATCT-TGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCATCTCTCAA
* * *
74917608 GCCAATGCATGTCCCAGACATGTCTTACA-TTG-GCTTACATCTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCAT-C-TCTCAA
* *
74917653 GGCCGATGCATGTCCCAGACATGTCTCACACTAGCGC-TCGTCTCATT
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCATC-TCTCA-A
* * * **
74917700 GCCAATGCCATATCCCAGATATGGTCTTATTCT-G-GC-TCTCAT-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCGCATCTC-TCAA
*
74917744 TGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 ----GCCGATGCATGTCCCAGACATGTCTTACACTAGC
74917782 TCACACACAA
Statistics
Matches: 202, Mismatches: 43, Indels: 43
0.70 0.15 0.15
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 32 0.16
45 5 0.02
46 52 0.26
47 39 0.19
48 58 0.29
49 6 0.03
51 2 0.01
52 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCATCTCTCAA
Done.