Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 244 of 425
Found at i:74918132 original size:30 final size:30
Alignment explanation
Indices: 74918091--74918149 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
74918081 TTTTACATCT
*
74918091 TTGGTAAAATGACCATTTTGCCCCTAGGCC
1 TTGGCAAAATGACCATTTTGCCCCTAGGCC
74918121 TTGGCAAAATGACCATTTTGCCCCTAGGC
1 TTGGCAAAATGACCATTTTGCCCCTAGGC
74918150 TCGAAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (30 bp):
TTGGCAAAATGACCATTTTGCCCCTAGGCC
Found at i:74921093 original size:40 final size:40
Alignment explanation
Indices: 74921048--74921214 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74921038 CGGAATATAA
74921048 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74921088 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74921128 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74921168 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74921207 CCGGATAT
1 CCGGATAT
74921215 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74921198 original size:80 final size:79
Alignment explanation
Indices: 74921048--74921214 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
74921038 CGGAATATAA
* *
74921048 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
74921113 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
74921128 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
74921190 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
74921207 CCGGATAT
1 CCGGATAT
74921215 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:74922056 original size:17 final size:19
Alignment explanation
Indices: 74922033--74922078 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74922023 AAGAAGCATG
74922033 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74922051 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74922069 AATCATGCTC
1 AATCATGCTC
74922079 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74929089 original size:40 final size:40
Alignment explanation
Indices: 74929044--74929210 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74929034 CGGAATATAA
74929044 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74929084 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74929124 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74929164 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74929203 CCGGATAT
1 CCGGATAT
74929211 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74929194 original size:80 final size:79
Alignment explanation
Indices: 74929044--74929210 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
74929034 CGGAATATAA
* *
74929044 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
74929109 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
74929124 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
74929186 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
74929203 CCGGATAT
1 CCGGATAT
74929211 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:74930055 original size:17 final size:19
Alignment explanation
Indices: 74930032--74930077 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74930022 AAGAAGCATG
74930032 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74930050 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74930068 AATCATGCTC
1 AATCATGCTC
74930078 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74935813 original size:71 final size:71
Alignment explanation
Indices: 74935729--74935892 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74935719 CGATTTGTCT
74935729 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74935794 CTTTCA
66 CTTTCA
74935800 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74935865 CTTTCA
66 CTTTCA
74935871 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74935893 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74935930 original size:71 final size:70
Alignment explanation
Indices: 74935729--74935926 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
74935719 CGATTTGTCT
* * * *
74935729 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74935794 CTTTCA
65 CTTTCA
* * * *
74935800 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74935865 CTTTCA
65 CTTTCA
* *
74935871 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74935927 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74944092 original size:40 final size:39
Alignment explanation
Indices: 74944047--74944212 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
74944037 CGGAATATAA
74944047 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
74944087 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
74944126 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
74944166 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
74944205 CCGGATAT
1 CCGGATAT
74944213 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:74944169 original size:79 final size:79
Alignment explanation
Indices: 74944063--74944212 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
74944053 ATAATCACGT
*
74944063 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
74944126 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
74944142 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
74944207 GGATAT
66 GGATAT
74944213 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74945056 original size:17 final size:19
Alignment explanation
Indices: 74945033--74945078 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74945023 AAGAAGCATG
74945033 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74945051 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74945069 AATCATGCTC
1 AATCATGCTC
74945079 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74952071 original size:40 final size:40
Alignment explanation
Indices: 74952026--74952192 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
74952016 CGGAATATAA
74952026 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74952066 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74952106 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74952146 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74952185 CCGGATAT
1 CCGGATAT
74952193 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74952176 original size:80 final size:79
Alignment explanation
Indices: 74952042--74952192 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74952032 ATAATCACGT
*
74952042 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
74952107 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74952122 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
74952185 CCGGATAT
64 CCGGATAT
74952193 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74953040 original size:17 final size:19
Alignment explanation
Indices: 74953017--74953062 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74953007 AAGAAGCATG
74953017 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74953035 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74953053 AATCATGCTC
1 AATCATGCTC
74953063 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74958785 original size:71 final size:71
Alignment explanation
Indices: 74958701--74958864 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74958691 CGATTTGTCT
74958701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74958766 CTTTCA
66 CTTTCA
74958772 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74958837 CTTTCA
66 CTTTCA
74958843 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74958865 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74958902 original size:71 final size:70
Alignment explanation
Indices: 74958701--74958898 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
74958691 CGATTTGTCT
* * * *
74958701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74958766 CTTTCA
65 CTTTCA
* * * *
74958772 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74958837 CTTTCA
65 CTTTCA
* *
74958843 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74958899 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74966362 original size:71 final size:71
Alignment explanation
Indices: 74966278--74966441 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
74966268 CGATTTGTCT
74966278 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
74966343 CTTTCA
66 CTTTCA
*
74966349 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
74966414 CTTTCA
66 CTTTCA
74966420 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74966442 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:74966479 original size:71 final size:70
Alignment explanation
Indices: 74966278--74966475 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
74966268 CGATTTGTCT
* * * *
74966278 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74966343 CTTTCA
65 CTTTCA
* * *
74966349 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74966414 CTTTCA
65 CTTTCA
* *
74966420 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74966476 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74972307 original size:26 final size:26
Alignment explanation
Indices: 74972271--74972323 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
74972261 TAGCCATGAG
74972271 ATATGACTCATATTGATGTAGGTAGT
1 ATATGACTCATATTGATGTAGGTAGT
*
74972297 ATATGGCTCATATTGATGTAGGTAGT
1 ATATGACTCATATTGATGTAGGTAGT
74972323 A
1 A
74972324 AAACTACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (26 bp):
ATATGACTCATATTGATGTAGGTAGT
Found at i:74983780 original size:27 final size:25
Alignment explanation
Indices: 74983732--74983781 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
74983722 ATGTTTAAGA
*
74983732 ACTTTTTATTTATTATTTTATTTTC
1 ACTTTTTATTTATTATCTTATTTTC
*
74983757 ACTTTTATCTTTATTTATCTTATTT
1 ACTTTT-TATTTA-TTATCTTATTT
74983782 AAGTACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 5 0.24
27 10 0.48
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (25 bp):
ACTTTTTATTTATTATCTTATTTTC
Found at i:74984945 original size:6 final size:6
Alignment explanation
Indices: 74984930--74984958 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
74984920 TCAAGTTCTT
74984930 AAAA-A AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA
74984959 CTTACATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:74985902 original size:13 final size:13
Alignment explanation
Indices: 74985884--74985913 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
74985874 GGAGTAATCG
74985884 CACACGGGTGTGT
1 CACACGGGTGTGT
74985897 CACACGGGTGTGT
1 CACACGGGTGTGT
74985910 CACA
1 CACA
74985914 TGGGCATGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:74993946 original size:49 final size:49
Alignment explanation
Indices: 74993678--74994141 Score: 732
Period size: 49 Copynumber: 9.7 Consensus size: 49
74993668 CCTTTCGGGA
* * * * *
74993678 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74993725 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74993772 CTTATCAC--ATATATACACCTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74993819 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74993866 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74993913 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74993962 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74994011 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74994060 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74994109 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
74994142 GCATAAAATC
Statistics
Matches: 397, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 181 0.46
49 215 0.54
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74998335 original size:58 final size:58
Alignment explanation
Indices: 74998262--74998400 Score: 215
Period size: 58 Copynumber: 2.4 Consensus size: 58
74998252 TACAGTTAGG
* *
74998262 ATTACCAGTCTAGCCTAAATCCTAATTGTAACATATTCTTGAGAGGGATTATATCAGA
1 ATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTTGAGAGGGATTATATCAGA
* *
74998320 ATTACCAGTCCAGCCTAAATGCTAATTGTAACATATGCTTGAGAGGGATTATATCAGG
1 ATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTTGAGAGGGATTATATCAGA
* * *
74998378 ATTACCCGTCCGGGCTAAATCCT
1 ATTACCAGTCCAGCCTAAATCCT
74998401 TTCTATAATG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 73 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (58 bp):
ATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTTGAGAGGGATTATATCAGA
Found at i:75007228 original size:15 final size:15
Alignment explanation
Indices: 75007199--75007235 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
75007189 ATTTGCAATT
*
75007199 TTAGCTT-TTCCCTA
1 TTAGCTTCTCCCCTA
75007213 TTAGCTTCTCCCCTA
1 TTAGCTTCTCCCCTA
75007228 TTAGCTTC
1 TTAGCTTC
75007236 ATTTTGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.14, C:0.32, G:0.08, T:0.46
Consensus pattern (15 bp):
TTAGCTTCTCCCCTA
Found at i:75008755 original size:18 final size:17
Alignment explanation
Indices: 75008734--75008793 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
75008724 TTTTTATCAA
75008734 AAAAATATTTAAAATTTC
1 AAAAA-ATTTAAAATTTC
*
75008752 AAAAAAGTTTAAAACTT-
1 AAAAAA-TTTAAAATTTC
* *
75008769 ATAAAATCTAAAATTTTC
1 AAAAAATTTAAAA-TTTC
75008787 AAAAAAT
1 AAAAAAT
75008794 AAATTTAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
18 20 0.59
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAAAATTTAAAATTTC
Found at i:75012538 original size:23 final size:23
Alignment explanation
Indices: 75012508--75012565 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
75012498 GCTATGCCTT
75012508 ACACGCCCGTGTGGAGGCAAAGC
1 ACACGCCCGTGTGGAGGCAAAGC
* *
75012531 ACACGCCCATGTGGAGGTAAAGC
1 ACACGCCCGTGTGGAGGCAAAGC
75012554 ACACGCCCGTGT
1 ACACGCCCGTGT
75012566 TTTTGGGGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.26, C:0.31, G:0.31, T:0.12
Consensus pattern (23 bp):
ACACGCCCGTGTGGAGGCAAAGC
Found at i:75012693 original size:28 final size:29
Alignment explanation
Indices: 75012642--75012696 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
75012632 ACATAGGTTT
75012642 TCACACGGCCAAGCACACGCCTGTGTCCC
1 TCACACGGCCAAGCACACGCCTGTGTCCC
*
75012671 TCACACGGCCTAG-ACACGCCTGTGTC
1 TCACACGGCCAAGCACACGCCTGTGTC
75012697 TAAAAACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.20, C:0.42, G:0.22, T:0.16
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCTGTGTCCC
Found at i:75020418 original size:22 final size:22
Alignment explanation
Indices: 75020388--75020443 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
75020378 TAATAAACTA
*
75020388 CATCAGTATCT-AGTCTGTTCTG
1 CATCTGTATCTGA-TCTGTTCTG
*
75020410 CATCTGTATCTGATCTGTTTTG
1 CATCTGTATCTGATCTGTTCTG
75020432 CATCT-TATCTGA
1 CATCTGTATCTGA
75020444 ATTGTTATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 7 0.23
22 23 0.74
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (22 bp):
CATCTGTATCTGATCTGTTCTG
Found at i:75020917 original size:31 final size:30
Alignment explanation
Indices: 75020815--75020920 Score: 96
Period size: 31 Copynumber: 3.5 Consensus size: 30
75020805 ATGGGGTGTT
* *
75020815 ACATATATAT-TATATATAATAAAACCCA-C
1 ACATATATATATATACAT-ATAACACCCATC
*
75020844 ACATATATAT-TATACATATAACACCTATGC
1 ACATATATATATATACATATAACACCCAT-C
75020874 ACCCA-ATATATAT-TACATATAACACCCACTC
1 A--CATATATATATATACATATAACACCCA-TC
75020905 ACATATATTATATATA
1 ACATATA-TATATATA
75020921 TAACATTAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
28 8 0.12
29 18 0.28
30 5 0.08
31 27 0.42
32 6 0.09
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (30 bp):
ACATATATATATATACATATAACACCCATC
Found at i:75023181 original size:13 final size:13
Alignment explanation
Indices: 75023140--75023182 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
75023130 AATACCATAC
75023140 ATAGTTATACTGAAA
1 ATAGTTATAC--AAA
*
75023155 ATAGTAAT-CAAA
1 ATAGTTATACAAA
75023167 ATAGTTATACAAA
1 ATAGTTATACAAA
75023180 ATA
1 ATA
75023183 TGTGGAGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 10 0.40
13 7 0.28
14 1 0.04
15 7 0.28
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.30
Consensus pattern (13 bp):
ATAGTTATACAAA
Found at i:75029042 original size:11 final size:11
Alignment explanation
Indices: 75029026--75029056 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
75029016 TGCCTCCCTT
75029026 ATTTATTTTTG
1 ATTTATTTTTG
75029037 ATTTATTTTTG
1 ATTTATTTTTG
*
75029048 AATTATTTT
1 ATTTATTTT
75029057 AATATTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (11 bp):
ATTTATTTTTG
Found at i:75029553 original size:14 final size:13
Alignment explanation
Indices: 75029534--75029567 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
75029524 TGTATTAAAC
75029534 AAATTTTATAATTT
1 AAATTTTAT-ATTT
*
75029548 AAATTTAATATTT
1 AAATTTTATATTT
75029561 AAATTTT
1 AAATTTT
75029568 CAACACTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AAATTTTATATTT
Found at i:75029634 original size:15 final size:15
Alignment explanation
Indices: 75029595--75029652 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
75029585 TTGATAAACT
75029595 AAAAAATTAAGTGCTG
1 AAAAAA-TAAGTGCTG
*
75029611 AAGAAATAAGTG-TG
1 AAAAAATAAGTGCTG
* *
75029625 AAAAACATAATTACTG
1 AAAAA-ATAAGTGCTG
*
75029641 AAAAATTAAGTG
1 AAAAAATAAGTG
75029653 TCGAATTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
14 6 0.18
15 15 0.45
16 12 0.36
ACGTcount: A:0.53, C:0.05, G:0.17, T:0.24
Consensus pattern (15 bp):
AAAAAATAAGTGCTG
Found at i:75031409 original size:25 final size:25
Alignment explanation
Indices: 75031381--75031434 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
75031371 ACATTTTTCA
*
75031381 TGTATAT-TTTTCACTTATAAATTTG
1 TGTATATAATTTCACTTAT-AATTTG
* *
75031406 TGTATATAATTTCATTTGTAATTTG
1 TGTATATAATTTCACTTATAATTTG
75031431 TGTA
1 TGTA
75031435 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (25 bp):
TGTATATAATTTCACTTATAATTTG
Found at i:75034015 original size:17 final size:18
Alignment explanation
Indices: 75033993--75034027 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75033983 TAATAATTAG
*
75033993 AAATTA-ATTTTTAAATA
1 AAATTATATTTTCAAATA
75034010 AAATTATATTTTCAAATA
1 AAATTATATTTTCAAATA
75034028 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATTATATTTTCAAATA
Found at i:75036478 original size:17 final size:18
Alignment explanation
Indices: 75036436--75036484 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
75036426 AGTTGAAAAG
75036436 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
75036455 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
75036472 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
75036485 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:75037472 original size:40 final size:39
Alignment explanation
Indices: 75037305--75037474 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
75037295 AGAAATTGAA
*
75037305 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75037344 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75037384 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75037424 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
75037464 TGATATCCGGG
1 TGATATCCGGG
75037475 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75047763 original size:17 final size:18
Alignment explanation
Indices: 75047721--75047769 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
75047711 AGTTGAAAAG
75047721 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
75047740 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
75047757 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
75047770 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:75048756 original size:40 final size:39
Alignment explanation
Indices: 75048589--75048758 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
75048579 AGAAATTGAA
*
75048589 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75048628 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75048668 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75048708 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
75048748 TGATATCCGGG
1 TGATATCCGGG
75048759 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75050718 original size:40 final size:39
Alignment explanation
Indices: 75050654--75050749 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 39
75050644 ATATACTCTA
75050654 TCTAGTGTGTTTCGGTTGGATTAGCTCTTATGAGCTTCTG
1 TCTAGTGT-TTTCGGTTGGATTAGCTCTTATGAGCTTCTG
* * *
75050694 TCTGGTGTATTTCGGTTTGATTAGCTCTTATGAGCTTTTG
1 TCTAGTGT-TTTCGGTTGGATTAGCTCTTATGAGCTTCTG
*
75050734 TCTAGTGTGTTCGGTT
1 TCTAGTGTTTTCGGTT
75050750 AATCTGATGA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 7 0.14
40 43 0.86
ACGTcount: A:0.11, C:0.14, G:0.27, T:0.48
Consensus pattern (39 bp):
TCTAGTGTTTTCGGTTGGATTAGCTCTTATGAGCTTCTG
Found at i:75054366 original size:45 final size:45
Alignment explanation
Indices: 75054281--75054385 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 45
75054271 AAATGAATAG
* * * *
75054281 AAATAGAGAAATGGAAAGCATTCAGAAATGATTATGATTTTCTCTA
1 AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTC-A
* ** *
75054327 AAATGGAGAAAT-GAAATCATTTGGAAATAAATATAATTTTTTCA
1 AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTCA
75054371 AAAT-G-GAAATGGAAA
1 AAATGGAGAAATGGAAA
75054386 TGAAAATGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 5 0.10
43 5 0.10
44 5 0.10
45 24 0.48
46 11 0.22
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.30
Consensus pattern (45 bp):
AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTCA
Found at i:75063508 original size:46 final size:45
Alignment explanation
Indices: 75063441--75063611 Score: 213
Period size: 46 Copynumber: 3.7 Consensus size: 45
75063431 AACCCGCCCC
*
75063441 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
*
75063487 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * *
75063535 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
75063579 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
75063612 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 3 0.03
45 28 0.26
46 32 0.30
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:75063604 original size:92 final size:93
Alignment explanation
Indices: 75063446--75063615 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
75063436 GCCCCTAAGT
* *
75063446 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75063511 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75063539 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75063603 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75063616 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75066479 original size:43 final size:43
Alignment explanation
Indices: 75066430--75066539 Score: 166
Period size: 43 Copynumber: 2.6 Consensus size: 43
75066420 TCGACATTTC
** * *
75066430 GCCTGCTAGGCTTGAAGCTCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
*
75066473 GCCTGCTAGGCCCGAAGCCCGATATTATCTCACCGGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
*
75066516 GCCTGCCAGGCCCGAAGCCCGATA
1 GCCTGCTAGGCCCGAAGCCCGATA
75066540 ATATTATTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (43 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
Found at i:75068257 original size:14 final size:15
Alignment explanation
Indices: 75068229--75068257 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75068219 AAAATTTAGG
75068229 CATGATACTTTCACA
1 CATGATACTTTCACA
75068244 CATGATAC-TTCACA
1 CATGATACTTTCACA
75068258 TATAATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (15 bp):
CATGATACTTTCACA
Found at i:75075469 original size:25 final size:25
Alignment explanation
Indices: 75075435--75075510 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
75075425 ACTTGCAGCA
*
75075435 AAGGCTTTCCAAATAACTTCGCCACT
1 AAGGC-TTCCAAATAACTTCGCCACC
75075461 AAGGCTTCCTAAATAA-TAT-GCCACC
1 AAGGCTTCC-AAATAACT-TCGCCACC
*
75075486 ATAGGCCTTTCAAATAAC-TCGCCAC
1 A-AGG-CTTCCAAATAACTTCGCCAC
75075511 AAAGCCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
25 12 0.29
26 26 0.62
27 4 0.10
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (25 bp):
AAGGCTTCCAAATAACTTCGCCACC
Found at i:75075559 original size:50 final size:50
Alignment explanation
Indices: 75075447--75075719 Score: 345
Period size: 50 Copynumber: 5.4 Consensus size: 50
75075437 GGCTTTCCAA
* * *
75075447 ATAACTTCGCCACTAAGGC-TTCCTAAATAATATGCCACCATAGGCCTTTCAA
1 ATAAC-TCGCCACAAAGGCTTTCC-AGATAATATGCCA-CATAGGCCTTTCAG
* * *
75075499 ATAACTCGCCACAAAGCCTTTTCAGATAATATGCCACATATGCCTTTCAG
1 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCTTTCAG
75075549 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCTCTT-AG
1 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCT-TTCAG
* * *
75075599 ATAACTCACCACAAAGGCTTTCCAAATAATATGTCACATAGGCCTTTCAG
1 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCTTTCAG
* * * *
75075649 ATAACTTGCCACAAATGCTTTCTAGATAATATGACACATAGGCCTCTT-AG
1 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCT-TTCAG
* *
75075699 AGAACTCACCACAAAGGCTTT
1 ATAACTCGCCACAAAGGCTTT
75075720 GTTTGATTAG
Statistics
Matches: 195, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.01
50 158 0.81
51 27 0.14
52 8 0.04
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (50 bp):
ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCTTTCAG
Found at i:75075686 original size:25 final size:24
Alignment explanation
Indices: 75075433--75075691 Score: 136
Period size: 25 Copynumber: 10.3 Consensus size: 24
75075423 TGACTTGCAG
*
75075433 CAAAGGCTTTCCAAATAACT-TCGCCA
1 CAAAGGCTTT-CAGATAA-TAT-GCCA
* * *
75075459 CTAAGGCTTCCTAAATAATATGCCA
1 CAAAGGCTTTC-AGATAATATGCCA
* * *
75075484 CCATAGGCCTTTCAAATAACT-CGCCA
1 -CAAAGG-CTTTCAGATAA-TATGCCA
*
75075510 CAAAGCCTTTTCAGATAATATGCCA
1 CAAAGGC-TTTCAGATAATATGCCA
* * *
75075535 CATATGCCTTTCAGATAACT-CGCCA
1 CA-AAGGCTTTCAGATAA-TATGCCA
75075560 CAAAGGCTTTCCAGATAATATGCCA
1 CAAAGGCTTT-CAGATAATATGCCA
*
75075585 CATAGGCCTCTT-AGATAACTCA--CCA
1 CAAAGG-CT-TTCAGATAA-T-ATGCCA
* *
75075610 CAAAGGCTTTCCAAATAATATGTCA
1 CAAAGGCTTT-CAGATAATATGCCA
*
75075635 CATAGGCCTTTCAGATAACT-TGCCA
1 CAAAGG-CTTTCAGATAA-TATGCCA
* *
75075660 CAAATGCTTTCTAGATAATATGACA
1 CAAAGGCTTTC-AGATAATATGCCA
*
75075685 CATAGGC
1 CAAAGGC
75075692 CTCTTAGAGA
Statistics
Matches: 183, Mismatches: 27, Indels: 47
0.71 0.11 0.18
Matches are distributed among these distances:
23 3 0.02
24 18 0.10
25 112 0.61
26 42 0.23
27 8 0.04
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (24 bp):
CAAAGGCTTTCAGATAATATGCCA
Found at i:75078334 original size:40 final size:40
Alignment explanation
Indices: 75078289--75078418 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75078279 CGGAATACAA
75078289 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
75078329 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
75078369 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
75078409 CCGGATATAA
1 CCGGATATAA
75078419 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:75078433 original size:40 final size:40
Alignment explanation
Indices: 75078289--75078452 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
75078279 CGGAATACAA
* **
75078289 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
75078329 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
75078369 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
75078409 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
75078449 CCGG
1 CCGG
75078453 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:75086386 original size:40 final size:40
Alignment explanation
Indices: 75086341--75086470 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75086331 CGGAATACAA
75086341 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
75086381 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
75086421 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
75086461 CCGGATATAA
1 CCGGATATAA
75086471 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:75086485 original size:40 final size:40
Alignment explanation
Indices: 75086341--75086504 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
75086331 CGGAATACAA
* **
75086341 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
75086381 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
75086421 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
75086461 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
75086501 CCGG
1 CCGG
75086505 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:75091620 original size:46 final size:45
Alignment explanation
Indices: 75091553--75091727 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
75091543 TGTAACCCGC
75091553 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
75091599 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
75091645 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
75091692 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
75091728 ATGCCCAAAC
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.67
47 32 0.30
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:75091673 original size:93 final size:93
Alignment explanation
Indices: 75091561--75091732 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75091551 GCCCATAAGT
* * *
75091561 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
75091626 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
75091654 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
*
75091719 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
75091733 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75096305 original size:28 final size:29
Alignment explanation
Indices: 75096274--75096330 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
75096264 CACAAGTATC
*
75096274 ATATAATCC-TCCCAAACACACCAAAATA
1 ATATAATCCATCCAAAACACACCAAAATA
*
75096302 ATATAATCCATCCAAAACACACCAGAATA
1 ATATAATCCATCCAAAACACACCAAAATA
75096331 GCACAGAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.18
Consensus pattern (29 bp):
ATATAATCCATCCAAAACACACCAAAATA
Found at i:75096330 original size:29 final size:28
Alignment explanation
Indices: 75096247--75096330 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
75096237 AACACACCAG
* * * * *
75096247 TATAATTCTCCATAACACACAAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
* *
75096275 TATAATCCTCCCAAACACACCAAAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
75096303 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
75096331 GCACAGAGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 29 0.63
29 17 0.37
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:75096394 original size:13 final size:14
Alignment explanation
Indices: 75096371--75096400 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
75096361 GGATATAAAC
75096371 ATCAGCATCTCCAA
1 ATCAGCATCTCCAA
75096385 ATCA-CATCTCCAA
1 ATCAGCATCTCCAA
75096398 ATC
1 ATC
75096401 CCTTCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.37, C:0.37, G:0.03, T:0.23
Consensus pattern (14 bp):
ATCAGCATCTCCAA
Found at i:75096516 original size:17 final size:17
Alignment explanation
Indices: 75096494--75096532 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
75096484 TTTATTTATT
*
75096494 TCAATTTCATTTCCATA
1 TCAATTTCAGTTCCATA
*
75096511 TCAATTTCAGTTCCATT
1 TCAATTTCAGTTCCATA
75096528 TCAAT
1 TCAAT
75096533 ATACAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.03, T:0.46
Consensus pattern (17 bp):
TCAATTTCAGTTCCATA
Found at i:75096517 original size:23 final size:24
Alignment explanation
Indices: 75096491--75096539 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
75096481 TTATTTATTT
* *
75096491 ATTTCAATTTCATTTCCATAT-CA
1 ATTTCAATTCCATTTCAATATACA
*
75096514 ATTTCAGTTCCATTTCAATATACA
1 ATTTCAATTCCATTTCAATATACA
75096538 AT
1 AT
75096540 CAATTCAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (24 bp):
ATTTCAATTCCATTTCAATATACA
Found at i:75097704 original size:7 final size:7
Alignment explanation
Indices: 75097662--75097686 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
75097652 TTTACTTATT
75097662 AATAATA
1 AATAATA
75097669 AATAATA
1 AATAATA
75097676 AATAATA
1 AATAATA
75097683 AATA
1 AATA
75097687 TCTACTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AATAATA
Found at i:75097812 original size:17 final size:17
Alignment explanation
Indices: 75097792--75097825 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
75097782 ATTCACTAAT
75097792 ATAAT-ATCAATTAAATA
1 ATAATAATCAA-TAAATA
75097809 ATAATAATCAATAAATA
1 ATAATAATCAATAAATA
75097826 TCTTTTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAATCAATAAATA
Found at i:75099115 original size:45 final size:45
Alignment explanation
Indices: 75099051--75099235 Score: 168
Period size: 45 Copynumber: 4.2 Consensus size: 45
75099041 TCCGTAGGAT
75099051 ATCGATATATGTGTTTTCAAGTAAGACCATGTCTGGGACGTTGGC
1 ATCGATATATGTGTTTTCAAGTAAGACCATGTCTGGGACGTTGGC
**
75099096 ATCGATATATGTGTTTTCAAGTAAGACCACATCT-GGACGTTGGC
1 ATCGATATATGTGTTTTCAAGTAAGACCATGTCTGGGACGTTGGC
* * ** * * *
75099140 ATCGATTTATATATGGTTAT-GTGTAAGACCATGTCTGAGACATCGGC
1 ATCGA--TATATGT-GTTTTCAAGTAAGACCATGTCTGGGACGTTGGC
* ** *
75099187 ATCG-TAT-T-TG-ATTCGTGTAAGACCCTGTCTGGGACAG-TGGC
1 ATCGATATATGTGTTTTCAAGTAAGACCATGTCTGGGAC-GTTGGC
75099228 ATCGATAT
1 ATCGATAT
75099236 GAGATAGCAT
Statistics
Matches: 116, Mismatches: 17, Indels: 17
0.77 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 27 0.23
42 4 0.03
43 1 0.01
44 18 0.16
45 32 0.28
46 18 0.16
47 15 0.13
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (45 bp):
ATCGATATATGTGTTTTCAAGTAAGACCATGTCTGGGACGTTGGC
Found at i:75102420 original size:47 final size:47
Alignment explanation
Indices: 75102303--75102433 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
75102293 GTACGAGTGA
* * * * *
75102303 TACCTTGATTTGACTACGGGCCATGGTATAGGTATTTCAGTGAGGAGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTA-CTCAGGGAGAAGT
* *
75102351 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGGGAGAAGT
* *
75102398 TACCTTAATTTGGCTACTAGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACT
75102434 TATTGATTGA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 42 0.57
48 32 0.43
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGGGAGAAGT
Found at i:75107132 original size:40 final size:40
Alignment explanation
Indices: 75107077--75107286 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75107067 AACATTGGAA
75107077 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75107117 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75107157 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75107197 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75107236 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75107277 CTATATCCGG
1 ATATATCCGG
75107287 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75115267 original size:40 final size:40
Alignment explanation
Indices: 75115212--75115461 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
75115202 AACATTGGAA
75115212 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75115252 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75115292 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75115332 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75115372 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75115411 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75115452 CTATATCCGG
1 ATATATCCGG
75115462 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75119918 original size:40 final size:39
Alignment explanation
Indices: 75119881--75120063 Score: 230
Period size: 40 Copynumber: 4.7 Consensus size: 39
75119871 GCTACTCGTT
* *
75119881 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
75119921 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
75119961 C-AATGCCTTCGGG-CTTAGCCCGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
75119998 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
75120039 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75120064 CATCATTCGA
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
37 16 0.13
38 18 0.14
39 22 0.17
40 58 0.46
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:75120010 original size:77 final size:80
Alignment explanation
Indices: 75119883--75120061 Score: 240
Period size: 77 Copynumber: 2.3 Consensus size: 80
75119873 TACTCGTTCA
* **
75119883 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
75119947 TTTAGTAAC-TCGCAC
65 TATAGTAACTTAGCAC
**
75119962 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
75120025 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
75120040 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
75120062 GACATCATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
76 3 0.03
77 39 0.44
78 25 0.28
79 21 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:75128150 original size:78 final size:81
Alignment explanation
Indices: 75128042--75128223 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
75128032 TACTCGTTCA
* *
75128042 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
75128105 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
75128121 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
75128184 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
75128200 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75128224 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:75128223 original size:40 final size:40
Alignment explanation
Indices: 75128021--75128223 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
75128011 TCGGATTTAA
** *
75128021 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75128061 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75128101 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75128139 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
75128179 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75128219 CCGGA
1 CCGGA
75128224 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75131835 original size:40 final size:40
Alignment explanation
Indices: 75131798--75131982 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
75131788 GCTACTCGTT
*
75131798 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75131838 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
75131878 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
75131917 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75131958 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75131983 CACATTCGTA
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 35 0.26
40 82 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75131913 original size:79 final size:82
Alignment explanation
Indices: 75131798--75131982 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 82
75131788 GCTACTCGTT
*
75131798 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75131861 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
75131878 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
75131941 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
75131958 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75131983 CACATTCGTA
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.61
80 34 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75135581 original size:40 final size:40
Alignment explanation
Indices: 75135544--75135729 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
75135534 GCTACTCGTT
* * *
75135544 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75135584 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75135624 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
75135664 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75135705 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75135730 CACATTCGTA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75144438 original size:78 final size:78
Alignment explanation
Indices: 75144327--75144483 Score: 287
Period size: 78 Copynumber: 2.0 Consensus size: 78
75144317 CTTACATGCA
* *
75144327 AATGAAATAGTTTGACTGAATGCTCCCAAGCTATCTTCAACAGTGTTTCGATTTCAAGAAGAATA
1 AATGAAATAATTTGACTGAATGATCCCAAGCTATCTTCAACAGTGTTTCGATTTCAAGAAGAATA
*
75144392 AATGAGGGTTGTG
66 AATGAGGGTGGTG
75144405 AATGAAATAATTTGACTGAATGATCCCAAGCTATCTTCAACAGTGTTTCGATTTCAAGAAGAATA
1 AATGAAATAATTTGACTGAATGATCCCAAGCTATCTTCAACAGTGTTTCGATTTCAAGAAGAATA
75144470 AATGAGGGTGGTG
66 AATGAGGGTGGTG
75144483 A
1 A
75144484 TGGTTTATTT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (78 bp):
AATGAAATAATTTGACTGAATGATCCCAAGCTATCTTCAACAGTGTTTCGATTTCAAGAAGAATA
AATGAGGGTGGTG
Found at i:75144524 original size:17 final size:17
Alignment explanation
Indices: 75144498--75144533 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
75144488 TTATTTCATA
75144498 TTTTAAGTTTTATTAAT
1 TTTTAAGTTTTATTAAT
* *
75144515 TTTTAGGTTTTATTTAT
1 TTTTAAGTTTTATTAAT
75144532 TT
1 TT
75144534 ACCAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (17 bp):
TTTTAAGTTTTATTAAT
Found at i:75146331 original size:40 final size:39
Alignment explanation
Indices: 75146286--75146412 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
75146276 CGGAATATAA
75146286 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75146326 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75146366 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75146406 CCGGATA
1 CCGGATA
75146413 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75154347 original size:40 final size:39
Alignment explanation
Indices: 75154302--75154428 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
75154292 CGGAACATAA
75154302 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75154342 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75154382 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75154422 CCGGATA
1 CCGGATA
75154429 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75163564 original size:101 final size:101
Alignment explanation
Indices: 75163385--75163594 Score: 278
Period size: 101 Copynumber: 2.1 Consensus size: 101
75163375 AATTGACGGA
* ** *
75163385 TAAGACCAGGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTAGGCTATGGCATATTAA
1 TAAGACCAGGGTTGGACCATGACAGTAATTATATGTAAGACCATAGCTAGGCTATGACATATTAA
* * **
75163450 TGAAAAGATCATAACTAGGTTATGGCACTTTGAATG
66 CGAAAAGACCATAACTAGGTTATGGCACTACGAATG
* * *
75163486 TAAGACCATGGTTGGACCATGACAGTAATTATATGTAAGACCATATCTAGGCTATGACAT-TCTG
1 TAAGACCAGGGTTGGACCATGACAGTAATTATATGTAAGACCATAGCTAGGCTATGACATAT-TA
* * *
75163550 ACGATAAGACCATAATTGGGTTATGGCACTACGAATG
65 ACGAAAAGACCATAACTAGGTTATGGCACTACGAATG
75163587 TAAGACCA
1 TAAGACCA
75163595 AGGCAGGGCC
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 93 0.99
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (101 bp):
TAAGACCAGGGTTGGACCATGACAGTAATTATATGTAAGACCATAGCTAGGCTATGACATATTAA
CGAAAAGACCATAACTAGGTTATGGCACTACGAATG
Found at i:75172227 original size:27 final size:27
Alignment explanation
Indices: 75172197--75172258 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
75172187 GGGCAAAATG
75172197 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
75172224 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
75172251 GTAATTTT
1 GTAATTTT
75172259 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:75172271 original size:27 final size:27
Alignment explanation
Indices: 75172238--75172317 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
75172228 TTTTACCCTA
* *
75172238 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
75172265 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
75172292 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
75172318 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:75172272 original size:54 final size:54
Alignment explanation
Indices: 75172213--75172339 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
75172203 TTACCCCACA
** *
75172213 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
75172266 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
75172321 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
75172340 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:75172325 original size:27 final size:28
Alignment explanation
Indices: 75172239--75172351 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
75172229 TTTACCCTAC
* * *
75172239 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
75172266 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
75172293 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
75172321 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
75172348 AGGG
1 AGGG
75172352 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:75172352 original size:27 final size:27
Alignment explanation
Indices: 75172332--75172649 Score: 399
Period size: 27 Copynumber: 11.8 Consensus size: 27
75172322 GGGTATTTCT
*
75172332 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
75172359 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
75172386 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
75172412 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
75172440 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75172467 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75172494 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75172521 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75172548 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75172575 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75172602 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75172628 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTTTGTAAATCGAGGGTA
75172650 CTTTGGTAAT
Statistics
Matches: 255, Mismatches: 33, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
26 7 0.03
27 247 0.97
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:75172363 original size:54 final size:54
Alignment explanation
Indices: 75172304--75172649 Score: 442
Period size: 54 Copynumber: 6.4 Consensus size: 54
75172294 GGGGTATTTT
* * *** * * *
75172304 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * * * * *
75172358 AGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAAATCGACGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * *
75172412 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
75172466 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
75172520 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
75172574 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * *
75172628 GATAATTCTGTAAATCG-GGGTA
1 GGTAATTTTATAAATCGAGGGTA
75172650 CTTTGGTAAT
Statistics
Matches: 256, Mismatches: 36, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
53 5 0.02
54 251 0.98
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:75172710 original size:27 final size:27
Alignment explanation
Indices: 75172639--75172743 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
75172629 ATAATTCTGT
*
75172639 AAATCG-GGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
75172665 AAGTCGA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
75172691 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
75172718 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
75172744 GTAAACTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.04
26 26 0.38
27 39 0.57
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:75172750 original size:28 final size:27
Alignment explanation
Indices: 75172672--75172752 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
75172662 TACAAGTCGA
*
75172672 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
75172699 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
* *
75172726 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-CAAACTAA
75172753 AGTATTCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 39 0.83
28 8 0.17
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:75176470 original size:27 final size:27
Alignment explanation
Indices: 75176440--75176501 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
75176430 GGGCAAAATG
75176440 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
75176467 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
75176494 GTAATTTT
1 GTAATTTT
75176502 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:75176514 original size:27 final size:27
Alignment explanation
Indices: 75176481--75176560 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
75176471 TTTTACCCTA
* *
75176481 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
75176508 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
75176535 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
75176561 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:75176515 original size:54 final size:54
Alignment explanation
Indices: 75176456--75176582 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
75176446 TTACCCCACA
** *
75176456 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
75176509 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
75176564 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
75176583 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:75176568 original size:27 final size:28
Alignment explanation
Indices: 75176482--75176594 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
75176472 TTTACCCTAC
* * *
75176482 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
75176509 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
75176536 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
75176564 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
75176591 AGGG
1 AGGG
75176595 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:75176595 original size:27 final size:27
Alignment explanation
Indices: 75176575--75176890 Score: 390
Period size: 27 Copynumber: 11.8 Consensus size: 27
75176565 GGGTATTTCT
*
75176575 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
75176602 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75176629 GTAA-TTTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
75176654 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
75176682 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75176709 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75176736 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75176763 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75176790 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75176817 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
75176844 GTAATTATGT-AATCGGGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
75176869 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTTTGTAAATCGAGGGTA
75176891 CTTTGGTAAT
Statistics
Matches: 251, Mismatches: 33, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.01
26 44 0.18
27 204 0.81
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:75176951 original size:27 final size:27
Alignment explanation
Indices: 75176880--75176984 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
75176870 ATAATTCTGT
*
75176880 AAATCG-GGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
75176906 AAGTCGA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
75176932 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
75176959 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
75176985 GTAAACTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.04
26 26 0.38
27 39 0.57
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:75176991 original size:28 final size:27
Alignment explanation
Indices: 75176913--75176993 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
75176903 TACAAGTCGA
*
75176913 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
75176940 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
* *
75176967 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-CAAACTAA
75176994 AGTATTCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 39 0.83
28 8 0.17
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:75180185 original size:29 final size:29
Alignment explanation
Indices: 75180145--75180272 Score: 169
Period size: 29 Copynumber: 4.5 Consensus size: 29
75180135 AAAATTGTAC
75180145 AGCACTAAGTGTGCGAACTGAAAAATATAT
1 AGCACTAAGTGTGCGAACTG-AAAATATAT
75180175 AGCA-TAAGTGTAGCG-ACTGAAAA-A-A-
1 AGCACTAAGTGT-GCGAACTGAAAATATAT
*
75180200 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
75180230 AGCACT-AGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
75180258 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75180273 GATTCACTAT
Statistics
Matches: 89, Mismatches: 1, Indels: 17
0.83 0.01 0.16
Matches are distributed among these distances:
25 7 0.08
26 15 0.17
27 1 0.01
28 16 0.18
29 37 0.42
30 13 0.15
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:75180208 original size:55 final size:58
Alignment explanation
Indices: 75180145--75180272 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 58
75180135 AAAATTGTAC
75180145 AGCACTAAGTGTGCGAACTGAAAAATATATAGCA-TAAGTGTAGCGA-CTGAAAA-A-A-
1 AGCACTAAGTGTGCGAACTGAAAAATATATAGCACT-AGTGT-GCGAGCTGAAAATATAT
* *
75180200 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAAATATATAGCACTAGTGTGCGAGCTGAAAATATAT
75180258 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75180273 GATTCACTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
54 4 0.06
55 44 0.67
56 2 0.03
57 1 0.02
58 15 0.23
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAAATATATAGCACTAGTGTGCGAGCTGAAAATATAT
Found at i:75186508 original size:18 final size:19
Alignment explanation
Indices: 75186487--75186522 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
75186477 AATAAAGAAA
*
75186487 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
75186505 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
75186523 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:75187375 original size:2 final size:2
Alignment explanation
Indices: 75187368--75187394 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75187358 CGTGATGCCC
75187368 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
75187395 CATAAGTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75187914 original size:29 final size:29
Alignment explanation
Indices: 75187872--75188003 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
75187862 AAAATTGTAC
75187872 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
75187901 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
75187930 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
75187960 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
75187989 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75188004 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:75187968 original size:59 final size:58
Alignment explanation
Indices: 75187872--75188003 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
75187862 AAAATTGTAC
75187872 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
75187930 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
75187989 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75188004 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:75187992 original size:88 final size:89
Alignment explanation
Indices: 75187842--75188003 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
75187832 GACAAGATTG
* * *
75187842 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
75187907 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * *
75187931 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
75187995 AAGTGTGCG
66 AAGTGTGCG
75188004 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:75196145 original size:16 final size:16
Alignment explanation
Indices: 75196124--75196154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75196114 TTTTCATATT
*
75196124 TTAATCATTTAAAAAA
1 TTAATCATATAAAAAA
75196140 TTAATCATATAAAAA
1 TTAATCATATAAAAA
75196155 TGTTTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAATCATATAAAAAA
Found at i:75198027 original size:22 final size:21
Alignment explanation
Indices: 75198001--75198046 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
75197991 TCACACGCCT
75198001 GTGTGGTCCAAGGGACATGCCC
1 GTGTGG-CCAAGGGACATGCCC
**
75198023 GTGTGGCCCTGGGACATGCCC
1 GTGTGGCCAAGGGACATGCCC
75198044 GTG
1 GTG
75198047 CTACGAGCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.13, C:0.28, G:0.39, T:0.20
Consensus pattern (21 bp):
GTGTGGCCAAGGGACATGCCC
Found at i:75202247 original size:40 final size:39
Alignment explanation
Indices: 75202202--75202331 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75202192 CGGAATATAA
75202202 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75202242 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75202282 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75202322 CCGGATATAA
1 CCGGATATAA
75202332 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75202346 original size:40 final size:40
Alignment explanation
Indices: 75202218--75202369 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
75202208 ATAACCATGT
* * *
75202218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75202258 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75202298 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75202338 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75202370 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75202352 original size:80 final size:80
Alignment explanation
Indices: 75202218--75202367 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75202208 ATAACCATGT
*
75202218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75202282 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75202298 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75202361 CCCGGAT
64 CCCGGAT
75202368 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75205433 original size:22 final size:22
Alignment explanation
Indices: 75205405--75205457 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
75205395 CTGGATGGTA
75205405 ATCAATAACCATATCATAATCT
1 ATCAATAACCATATCATAATCT
75205427 ATCAATAACCATATCATAATCT
1 ATCAATAACCATATCATAATCT
*
75205449 TTCAATAAC
1 ATCAATAAC
75205458 TCAAGCCACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (22 bp):
ATCAATAACCATATCATAATCT
Found at i:75205434 original size:11 final size:12
Alignment explanation
Indices: 75205405--75205442 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
75205395 CTGGATGGTA
75205405 ATCAATAACCAT
1 ATCAATAACCAT
*
75205417 ATC-ATAATC-T
1 ATCAATAACCAT
75205427 ATCAATAACCAT
1 ATCAATAACCAT
75205439 ATCA
1 ATCA
75205443 TAATCTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.18
11 10 0.45
12 8 0.36
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (12 bp):
ATCAATAACCAT
Found at i:75221975 original size:29 final size:29
Alignment explanation
Indices: 75221942--75222047 Score: 140
Period size: 29 Copynumber: 3.7 Consensus size: 29
75221932 AAGTTATACC
** *
75221942 GATTTGGCTTCAAGCCATGCATATTGGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
*
75221971 GATTTGGCTTCGGGCCATGCATATCAGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
* * *
75222000 GATTTGGCTTTGGGCAACGCATATCGGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
*
75222029 GATTTGGCTTCGGGTCATG
1 GATTTGGCTTCGGGCCATG
75222048 ATAATTGTTC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (29 bp):
GATTTGGCTTCGGGCCATGCATATCGGAT
Found at i:75222315 original size:24 final size:24
Alignment explanation
Indices: 75222288--75222336 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
75222278 GAGAAAGGTT
75222288 TGTAGTTAATGT-GAAATTGGCTGA
1 TGTAGTTAAT-TCGAAATTGGCTGA
*
75222312 TGTAGTTAATTCGAAATTGGTTGA
1 TGTAGTTAATTCGAAATTGGCTGA
75222336 T
1 T
75222337 TTACATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.41
Consensus pattern (24 bp):
TGTAGTTAATTCGAAATTGGCTGA
Found at i:75225402 original size:108 final size:110
Alignment explanation
Indices: 75225258--75225458 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
75225248 ATCCTTTTGA
* * *
75225258 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAGTGCCAAGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
75225321 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
75225366 AACTTATCAGTGCCAAGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAGTGCCAAGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* *
75225431 TTCCATGCCTTGGCATGGTCTTATATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
75225459 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAGTGCCAAGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:75225413 original size:55 final size:52
Alignment explanation
Indices: 75225211--75225465 Score: 200
Period size: 55 Copynumber: 4.8 Consensus size: 52
75225201 ACACGGGTAC
* * * *
75225211 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATG-AA
*
75225260 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATGAA
* * * *
75225313 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G-AA
* * * *
75225368 CTTATCAGTGCCAAGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG-AA
* * * *
75225421 CCTTACCAATTTCCATGCCTTGGCATGGTCTTATATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACAT-GTATCCTT
75225466 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 65 0.39
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATGAA
Found at i:75235928 original size:45 final size:45
Alignment explanation
Indices: 75235858--75235955 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
75235848 TCACTAGTAA
* * *
75235858 ATATGACATCTGAACTCATTAAGTTGTGGTCTGAGTTCATGATAT
1 ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
* * * *
75235903 ATGTGACATCCGAACTTATCGAGTTGTGGTCTGAGTTCGTGATAC
1 ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
75235948 ATATGACA
1 ATATGACA
75235956 CATGTTTTGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (45 bp):
ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
Found at i:75238241 original size:173 final size:173
Alignment explanation
Indices: 75237945--75238293 Score: 662
Period size: 173 Copynumber: 2.0 Consensus size: 173
75237935 TTTTGGAAGA
*
75237945 AATTGCAAGAAGCTTTAGGTACAAAGGTACATTTTAGCACTGCATTTCACCCACAAACGGATGGT
1 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCACAAACGGATGGT
75238010 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
66 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
75238075 AAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
131 AAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
*
75238118 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCGCAAACGGATGGT
1 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCACAAACGGATGGT
*
75238183 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAGG
66 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
*
75238248 TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
131 AAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
75238291 AAT
1 AAT
75238294 AGCTTCCAAT
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 172 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (173 bp):
AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCACAAACGGATGGT
CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
AAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
Found at i:75241874 original size:27 final size:27
Alignment explanation
Indices: 75241672--75241878 Score: 173
Period size: 27 Copynumber: 7.6 Consensus size: 27
75241662 TAGAATTATT
* * *
75241672 GAAATACCTTTGGTTTACAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * **
75241699 GAAATTCCCTTGACTTATAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
75241726 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
75241753 AAAATACCCCTGATTTGGAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
75241780 GAAATACCCCTGATTTACAAAATTACA
1 GAAATACCCTTGATTTGCAAAATTACC
* * **
75241807 AAAATACCCTTAACTTT-CAAAAATTATA
1 GAAATACCCTTGA-TTTGC-AAAATTACC
* *
75241835 GAAATACCATTGGTTTGCAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
75241862 GAAATAACCTTGGTTTG
1 GAAATACCCTTGATTTG
75241879 TAGATTTACC
Statistics
Matches: 146, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
27 125 0.86
28 21 0.14
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTTGATTTGCAAAATTACC
Found at i:75242183 original size:41 final size:41
Alignment explanation
Indices: 75242138--75242260 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
75242128 GGAGGAAGAA
*
75242138 ATTGAGGATCGCATGGTTGTTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
75242179 ATTGAGGATCGCATGGTTGCTTAATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
75242220 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
75242261 GTGGCTTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:75243445 original size:19 final size:19
Alignment explanation
Indices: 75243421--75243460 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
75243411 TTGATGTATG
75243421 TTTGGCTAATAGAAATGGC
1 TTTGGCTAATAGAAATGGC
75243440 TTTGGCTAATAGAAATGGC
1 TTTGGCTAATAGAAATGGC
75243459 TT
1 TT
75243461 ACTTTGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (19 bp):
TTTGGCTAATAGAAATGGC
Found at i:75245310 original size:19 final size:19
Alignment explanation
Indices: 75245286--75245324 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
75245276 AGAAGATGAG
75245286 AAAATAAGATGATAATTTT
1 AAAATAAGATGATAATTTT
75245305 AAAATAAGATGATAATTTT
1 AAAATAAGATGATAATTTT
75245324 A
1 A
75245325 TTATCATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (19 bp):
AAAATAAGATGATAATTTT
Found at i:75253930 original size:17 final size:17
Alignment explanation
Indices: 75253910--75253944 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75253900 TTATAAGAGT
75253910 ATCTAATTTACATTGCA
1 ATCTAATTTACATTGCA
75253927 ATCTAATTTACATTGCA
1 ATCTAATTTACATTGCA
75253944 A
1 A
75253945 GAGTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (17 bp):
ATCTAATTTACATTGCA
Found at i:75255390 original size:3 final size:3
Alignment explanation
Indices: 75255382--75255490 Score: 218
Period size: 3 Copynumber: 36.3 Consensus size: 3
75255372 TCGTAGAATA
75255382 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
75255430 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
75255478 TTC TTC TTC TTC T
1 TTC TTC TTC TTC T
75255491 CTATTATTAA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 106 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Done.