Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 246 of 425
Found at i:75605940 original size:18 final size:20
Alignment explanation
Indices: 75605903--75605940 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
75605893 AAAAGCAACC
*
75605903 TGGATGGCTCTATTAACATA
1 TGGATGGCTCTATAAACATA
75605923 TGGAT-GCTC-ATAAACATA
1 TGGATGGCTCTATAAACATA
75605941 AAATGGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 4 0.24
20 5 0.29
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (20 bp):
TGGATGGCTCTATAAACATA
Found at i:75606939 original size:19 final size:20
Alignment explanation
Indices: 75606905--75606946 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
75606895 TTTCCTACCC
*
75606905 ATCCATCCACTACACACCAT
1 ATCCAACCACTACACACCAT
75606925 ATCCAACCA-TACACACCAT
1 ATCCAACCACTACACACCAT
75606944 ATC
1 ATC
75606947 AGAAGGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.19
Consensus pattern (20 bp):
ATCCAACCACTACACACCAT
Found at i:75613689 original size:27 final size:27
Alignment explanation
Indices: 75613659--75613935 Score: 355
Period size: 27 Copynumber: 10.3 Consensus size: 27
75613649 AAAGTAGATG
*
75613659 AAATGACTGTAATGCCCCTGTAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
*
75613686 AAATGA-TCGTAATGCCCCTATAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
** * * *
75613713 AAATGACCATAATACCCCTATAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
*
75613740 AAATGACTGTAATGCCCTTGTAGGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
* *
75613767 AAATGACCGTAATGCCCCTGTAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
75613794 AAATGACTGTAATGCCCCTGTAGGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
*
75613821 AAATGA-TCATAATGCCCCTGTAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
*
75613848 AAATGA-TCATAATGCCCCTGTAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
*
75613875 AAATGACTGTAATGCCCCTGTAAGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
* *
75613902 AAATGA-TAGTAATACCCCTGTATGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
75613929 AAATGAC
1 AAATGAC
75613936 GATTATGCCC
Statistics
Matches: 222, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.01
27 218 0.98
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATGACTGTAATGCCCCTGTAGGGTA
Found at i:75614121 original size:27 final size:29
Alignment explanation
Indices: 75614075--75614155 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 29
75614065 AGGAAGTACT
75614075 TTACTGGT-GACTATGTCAC-ATTCACT-A
1 TTACTGGTGGACTATGTCACAATT-ACTGA
75614102 TTACTGGTGGA-TAT-TCCACAATTACTGA
1 TTACTGGTGGACTATGT-CACAATTACTGA
* * *
75614130 -TACTGGTGG-CTTTGCCACATTTACTG
1 TTACTGGTGGACTATGTCACAATTACTG
75614156 TTTCAGGCAT
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
26 1 0.02
27 38 0.84
28 6 0.13
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (29 bp):
TTACTGGTGGACTATGTCACAATTACTGA
Found at i:75614364 original size:27 final size:27
Alignment explanation
Indices: 75614314--75614365 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
75614304 ATTACACTGT
* * *
75614314 TCTGATATTGTATTGTGCTTAGGCCAC
1 TCTGATATTGTATAGGGCTAAGGCCAC
*
75614341 TCTGTTATTGTATAGGGCTAAGGCC
1 TCTGATATTGTATAGGGCTAAGGCC
75614366 CAGACTATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.38
Consensus pattern (27 bp):
TCTGATATTGTATAGGGCTAAGGCCAC
Found at i:75616733 original size:7 final size:7
Alignment explanation
Indices: 75616721--75616748 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
75616711 CCATAGCCCT
75616721 TTTCATA
1 TTTCATA
75616728 TTTCATA
1 TTTCATA
75616735 TTTCATA
1 TTTCATA
75616742 TTTCATA
1 TTTCATA
75616749 ACACTGGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:75616776 original size:31 final size:31
Alignment explanation
Indices: 75616735--75616798 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
75616725 ATATTTCATA
* *
75616735 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75616766 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75616797 TT
1 TT
75616799 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75617054 original size:24 final size:24
Alignment explanation
Indices: 75616990--75617250 Score: 399
Period size: 24 Copynumber: 11.0 Consensus size: 24
75616980 GCTTTATCAT
*
75616990 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
75617015 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75617038 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75617061 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75617084 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
75617109 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75617132 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75617156 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75617180 ATAACTGGGGCATAAGCCCTTCTT-
1 ATAACTGGGGCATAAGCCCTT-TTA
*
75617204 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
75617228 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75617251 CACTTCTCCA
Statistics
Matches: 224, Mismatches: 5, Indels: 15
0.92 0.02 0.06
Matches are distributed among these distances:
23 86 0.38
24 108 0.48
25 30 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75617320 original size:9 final size:9
Alignment explanation
Indices: 75617306--75617362 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75617296 ATCTCGTGTG
75617306 CATATCATA
1 CATATCATA
*
75617315 CATATCATGTG
1 CATATCA--TA
75617326 CATATCATA
1 CATATCATA
* *
75617335 CATGTCATGTG
1 CATATCA--TA
75617346 CATATCATA
1 CATATCATA
75617355 CATATCAT
1 CATATCAT
75617363 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:75617325 original size:20 final size:20
Alignment explanation
Indices: 75617302--75617364 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
75617292 GAACATCTCG
75617302 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
75617322 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
75617342 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75617362 TGT
1 TGT
75617365 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75617447 original size:25 final size:25
Alignment explanation
Indices: 75617401--75617448 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
75617391 ATATATAAAC
* * * *
75617401 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75617426 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75617449 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75618697 original size:27 final size:27
Alignment explanation
Indices: 75618597--75618680 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
75618587 GGGCATATTC
*
75618597 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
75618624 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
75618651 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
75618678 GTC
1 GTC
75618681 TTTTTACATA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:75618772 original size:27 final size:27
Alignment explanation
Indices: 75618742--75618849 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
75618732 GTAAATCTAC
75618742 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
75618769 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
75618795 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
75618825 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
75618850 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:75618855 original size:27 final size:27
Alignment explanation
Indices: 75618825--75618955 Score: 146
Period size: 27 Copynumber: 4.9 Consensus size: 27
75618815 GTAACTTTGT
75618825 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
75618852 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
75618879 AAACCAGTGGTATTTT-GTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
75618905 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
75618932 AAAT-TGAGGGTATTTT-GTAATTTT
1 AAATCAG-GGGTATTTTGGTAATTTT
75618956 GTAAATCGAG
Statistics
Matches: 88, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.01
26 32 0.36
27 54 0.61
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:75618917 original size:53 final size:53
Alignment explanation
Indices: 75618739--75618955 Score: 193
Period size: 53 Copynumber: 4.0 Consensus size: 53
75618729 TTGGTAAATC
* * ** * *
75618739 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAACTAAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT-TGTAA-TTT
* * * * ** * *
75618794 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAACT-AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT-GTAATTT
* * *
75618849 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGTAATTT
* * **
75618902 TACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAG-GGTATTTTGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTTTACAAA-CCAGTGGTATTTTGTAATTT
75618955 T
1 T
75618956 GTAAATCGAG
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 51 0.38
54 32 0.24
55 15 0.11
56 35 0.26
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
TACAAACTAAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGTAATTT
Found at i:75618961 original size:26 final size:26
Alignment explanation
Indices: 75618832--75618969 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 26
75618822 TGTAAATCAG
75618832 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTT-GTAATTTTACAAATTGA
* * **
75618859 GGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTT-TGTAATTTTACAAATTGA
*
75618885 GTGGTATTTTGTAATTTTACAAACT-A
1 G-GGTATTTTGTAATTTTACAAATTGA
75618911 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTT-GTAATTTTACAAATTGA
** *
75618939 GGGTATTTTGTAATTTTGTAAATCGA
1 GGGTATTTTGTAATTTTACAAATTGA
75618965 GGGTA
1 GGGTA
75618970 AAATAGTAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
26 42 0.45
27 51 0.54
28 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGTAATTTTACAAATTGA
Found at i:75618969 original size:53 final size:52
Alignment explanation
Indices: 75618832--75618969 Score: 161
Period size: 53 Copynumber: 2.6 Consensus size: 52
75618822 TGTAAATCAG
*
75618832 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTT-GTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCA
* * * **
75618885 GTGGTATTTTGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTCACAAA-CCA
**
75618939 GGGTATTTTGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGTAATTTTACAAATCGAGGGTA
75618970 AAATAGTAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
52 1 0.01
53 59 0.82
54 12 0.17
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (52 bp):
GGGTATTTTGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCA
Found at i:75618986 original size:27 final size:27
Alignment explanation
Indices: 75618948--75619208 Score: 309
Period size: 27 Copynumber: 9.8 Consensus size: 27
75618938 AGGGTATTTT
* *
75618948 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
75618975 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
75619002 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
75619028 GATAATT-TGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* ** *
75619055 GTAATTCTATAAATTAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
75619082 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
75619109 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
75619136 GTAATT-TGTAAATCGAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
75619161 GTAATTATGTAAATCG-GGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
75619186 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
75619209 CTTTGGTAAT
Statistics
Matches: 207, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
25 16 0.08
26 63 0.30
27 128 0.62
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:75618996 original size:80 final size:79
Alignment explanation
Indices: 75618920--75619183 Score: 248
Period size: 80 Copynumber: 3.3 Consensus size: 79
75618910 AGGGGTATTT
* ** * * *
75618920 TGGTAATTTTACAAATTGAGGGTATTTTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 TGGTAATTTTACAAATCGAGGGTAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATT-TGT
75618985 AAATCAAGGGTAAAA
65 AAATCAAGGGTAAAA
* * * * *
75619000 TAGTAATTCTATAAATCGACGGTAAA-ACGATAA-TTTGTAAATCGAGGGTAAAACAGTAATTCT
1 TGGTAATTTTACAAATCGAGGGTAAATA-G-TAATTTTATAAATCGAGGGTAAAACAGTAATT-T
* *
75619063 ATAAATTAAGGGTAAAA
63 GTAAATCAAGGGTAAAA
* * * * *
75619080 CGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTGT
1 TGGTAATTTTACAAATCGAGGGT-AAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTTGT
*
75619145 AAATCGAGGGT-AAA
65 AAATCAAGGGTAAAA
* * **
75619159 CGGTAATTATGTAAATCG-GGGTAAA
1 TGGTAATTTTACAAATCGAGGGTAAA
75619184 ACGATAATTC
Statistics
Matches: 156, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
77 3 0.02
78 4 0.03
79 19 0.12
80 97 0.62
81 32 0.21
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (79 bp):
TGGTAATTTTACAAATCGAGGGTAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTTGTA
AATCAAGGGTAAAA
Found at i:75619034 original size:107 final size:105
Alignment explanation
Indices: 75618948--75619201 Score: 339
Period size: 107 Copynumber: 2.4 Consensus size: 105
75618938 AGGGTATTTT
* *
75618948 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
75619013 AATCGACGGTAAAACGATAATTTGTAAATCGAGGGTAAAACA
65 AATCGACGGTAAAACGATAATTTGTAAATCGAGGGT-AAACA
* * ** * * * *
75619055 GTAATTCTATAAATTAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* * *
75619120 AATCGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAACG
65 AATCGACGGTAAAACGATAATTTGTAAATCGAGGGTAAACA
*
75619161 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 GTAATTATGTAAATCGAGGGTAAAAAG-TAATTCTGTAAATC
75619202 GGGGGTACTT
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
104 1 0.01
105 20 0.16
106 16 0.13
107 89 0.71
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (105 bp):
GTAATTATGTAAATCGAGGGTAAAAAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGACGGTAAAACGATAATTTGTAAATCGAGGGTAAACA
Found at i:75619235 original size:27 final size:27
Alignment explanation
Indices: 75619214--75619303 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
75619204 GGGTACTTTG
*
75619214 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
75619241 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
75619268 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
75619295 GTAATTTTA
1 GTAATTTTA
75619304 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:75619255 original size:54 final size:54
Alignment explanation
Indices: 75619197--75619303 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
75619187 ATAATTCTGT
* * *
75619197 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
75619251 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
75619304 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:75619317 original size:27 final size:27
Alignment explanation
Indices: 75619214--75619318 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
75619204 GGGTACTTTG
* *
75619214 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
75619241 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
75619268 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
75619295 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
75619319 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:75621712 original size:16 final size:15
Alignment explanation
Indices: 75621687--75621716 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75621677 TGGTGTTGTG
75621687 ATATTTTGAAATCAA
1 ATATTTTGAAATCAA
75621702 ATATGTTTGAAATCA
1 ATAT-TTTGAAATCA
75621717 CATCCTAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTTTGAAATCAA
Found at i:75622459 original size:45 final size:47
Alignment explanation
Indices: 75622363--75622592 Score: 327
Period size: 45 Copynumber: 5.1 Consensus size: 47
75622353 CCTAGCCTCT
75622363 TTTAATAACTGGGGCA-AAG-CCTTTTAATAACT---GCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75622405 TTTAATAACTGGGGCATAAG-CC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
75622450 TTTCATAACTGGGGCATAAGCCC-TTTAAT-ACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
75622495 TTTTAATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* * *
75622542 TTCTTATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TT-TAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75622590 TTT
1 TTT
75622593 TTTCACTTCC
Statistics
Matches: 174, Mismatches: 4, Indels: 15
0.90 0.02 0.08
Matches are distributed among these distances:
42 26 0.15
43 5 0.03
45 57 0.33
46 24 0.14
47 24 0.14
48 38 0.22
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:75622538 original size:24 final size:24
Alignment explanation
Indices: 75622342--75622593 Score: 334
Period size: 23 Copynumber: 11.0 Consensus size: 24
75622332 GCTTTATCAT
*
75622342 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
75622367 ATAACTGGGGCA-AAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75622389 ATAACT---GCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75622409 ATAACTGGGGCATAAG-CC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75622431 ATAACTGGGGCATAAGCCC-TTTC
1 ATAACTGGGGCATAAGCCCTTTTA
75622454 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75622477 AT-ACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75622500 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75622523 ATAACTGGGGCATAAGCCCTTCTT-
1 ATAACTGGGGCATAAGCCCTT-TTA
* *
75622547 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75622571 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75622594 TTCACTTCCT
Statistics
Matches: 209, Mismatches: 6, Indels: 25
0.87 0.03 0.10
Matches are distributed among these distances:
19 3 0.01
20 13 0.06
21 2 0.01
22 50 0.24
23 67 0.32
24 64 0.31
25 10 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75622666 original size:9 final size:9
Alignment explanation
Indices: 75622652--75622708 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75622642 ATCTCGTGTG
75622652 CATATCATA
1 CATATCATA
*
75622661 CATATCATGTG
1 CATATCA--TA
75622672 CATATCATA
1 CATATCATA
* *
75622681 CATGTCATGTG
1 CATATCA--TA
75622692 CATATCATA
1 CATATCATA
75622701 CATATCAT
1 CATATCAT
75622709 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:75622671 original size:20 final size:20
Alignment explanation
Indices: 75622648--75622710 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
75622638 GAACATCTCG
75622648 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
75622668 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
75622688 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75622708 TGT
1 TGT
75622711 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75622786 original size:25 final size:25
Alignment explanation
Indices: 75622747--75622794 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75622737 ATATATAAAC
* * *
75622747 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
75622772 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
75622795 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:75624006 original size:25 final size:26
Alignment explanation
Indices: 75623955--75624040 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
75623945 TATTCGTACT
* *
75623955 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCTTACAGGGCT-TTACGGTCAC
75623982 TTTACCTTACA-GGCTTTACGGTCAC
1 TTTACCTTACAGGGCTTTACGGTCAC
* **
75624007 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCTTACA-GGGCTTTACGGTCAC
75624034 TTTACCT
1 TTTACCT
75624041 AATAGGGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
25 20 0.39
26 3 0.06
27 28 0.55
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.36
Consensus pattern (26 bp):
TTTACCTTACAGGGCTTTACGGTCAC
Found at i:75624123 original size:27 final size:27
Alignment explanation
Indices: 75624070--75624662 Score: 209
Period size: 27 Copynumber: 22.0 Consensus size: 27
75624060 TTTCATCCTA
* * * * * *
75624070 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
75624097 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** *
75624124 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-T
* * *
75624153 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
*
75624180 CAGGGGTATTT-GGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
75624206 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
75624232 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAT
* * *
75624259 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
* * *
75624287 TAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
75624314 CAAGGGTAAAAT-AGTAATTTTGTAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
** * *
75624341 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
* * ** * *
75624368 CGATGGTAAAAT-GATAATTTTGTAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
* *** * *
75624395 CGAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
***
75624422 CAAGGGTAAAACGGTAA-TTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** ** * *
75624448 CGA-GGTAAAACAATAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
*** *
75624474 CAAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** * *
75624501 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** *** * * *
75624528 CGGGGGTAAAACGATAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
75624555 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGGTAATTTTATAAAT
* *
75624582 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
* * * *
75624609 CGAGGGTATTTCAGTATTTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
75624635 CTAAGGGTATTTCGGTAATTTTAGTAAA
1 C-AAGGGTATTTCGGTAATTTTA-TAAA
75624663 CTAAAGTATT
Statistics
Matches: 458, Mismatches: 92, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
25 11 0.02
26 49 0.11
27 364 0.79
28 19 0.04
29 15 0.03
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAT
Found at i:75624348 original size:81 final size:81
Alignment explanation
Indices: 75624271--75624555 Score: 290
Period size: 81 Copynumber: 3.5 Consensus size: 81
75624261 AGGGGTATTT
* ** ** *
75624271 TGGTAATTTTACAAATTAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTG
1 TGGTAATTTTATAAATCGAGGGTATAACTGTAATTTTGTAAATCAAGGGTAAAACAGTAATTTTG
75624336 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * * * *
75624352 TAGTAATTCTATAAATCGATGGTA-AAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCT
1 TGGTAATTTTATAAATCGAGGGTATAACTG-TAATTTTGTAAATCAAGGGTAAAACAGTAATTTT
*
75624416 ATAAATCAAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * ** * *
75624433 CGGTAA-TTTATAAATCGA-GGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGGTAATTTTG
1 TGGTAATTTTATAAATCGAGGGTATAACTGTAATTTTGTAAATCAAGGGTAAAACAGTAATTTTG
*
75624496 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * * * *
75624512 CGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATC
1 TGGTAATTTTATAAATCGAGGGTATAACTG-TAATTTTGTAAATC
75624556 GGGGGTACTT
Statistics
Matches: 170, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
79 55 0.32
80 24 0.14
81 91 0.54
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (81 bp):
TGGTAATTTTATAAATCGAGGGTATAACTGTAATTTTGTAAATCAAGGGTAAAACAGTAATTTTG
TAAATCAAGGGTAAAA
Found at i:75624358 original size:54 final size:54
Alignment explanation
Indices: 75624300--75624562 Score: 332
Period size: 54 Copynumber: 4.9 Consensus size: 54
75624290 GGGTATTTCT
* ** * *
75624300 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
75624354 GTAATTCTATAAATCGATGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
75624408 GTAATTCTATAAATCAAGGGTAAAACGGTAA-TTTATAAATCGA-GGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
75624460 ATAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* ** * * *
75624514 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
75624563 CTTTGGTAAT
Statistics
Matches: 183, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
52 38 0.21
53 22 0.12
54 123 0.67
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:75624574 original size:133 final size:134
Alignment explanation
Indices: 75624300--75624555 Score: 345
Period size: 133 Copynumber: 1.9 Consensus size: 134
75624290 GGGTATTTCT
* * * * *
75624300 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAA-TTTATAAATCAAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* * *
75624365 AATCGATGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
65 AATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
75624430 AAACG
130 AAACG
* * * *
75624435 GTAATTTATAAATCGA-GGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAA
1 GTAATTTATAAATCAAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
* * *
75624499 ATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATC
66 ATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACAG-TAATTCTATAAATC
75624556 GGGGGTACTT
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
132 1 0.01
133 90 0.86
134 10 0.10
135 4 0.04
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.30
Consensus pattern (134 bp):
GTAATTTATAAATCAAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAA
AACG
Found at i:75627052 original size:51 final size:51
Alignment explanation
Indices: 75626976--75627076 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
75626966 AAAAATATAG
75626976 CATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATCA
1 CATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATCA
* * * *
75627027 CATAATAAGGTAAATAATCGATCCCAATCATAAAGCATTCAGCATGCATC
1 CATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATC
75627077 CTGTACCCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.22
Consensus pattern (51 bp):
CATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATCA
Found at i:75634500 original size:27 final size:27
Alignment explanation
Indices: 75634469--75634863 Score: 187
Period size: 27 Copynumber: 14.6 Consensus size: 27
75634459 TTAGTTTACC
*
75634469 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75634496 AAATTACT-AAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * * *
75634523 AAATTACTTAAAAATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75634550 AAATTACCGAAATACCCTC-AGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
75634577 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
75634604 AAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTGAAATAC-CCTCGATTTG-TA
* * ** **
75634631 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *** * *
75634658 GAATTACCGTTTTACCCTTGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * ** **
75634685 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* **
75634712 AAATTACTGAAATACCCT-TAGTTTACA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** * ***
75634739 AAATTACCAAAATACCATCGATCAATA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
75634766 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
75634793 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* * **
75634820 AAATTACCGAAATACCCTTG-TAGGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
*
75634847 GAATTACTGAAATACCC
1 AAATTACTGAAATACCC
75634864 CTGTAGGGTA
Statistics
Matches: 290, Mismatches: 61, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
26 12 0.04
27 268 0.92
28 10 0.03
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:75634636 original size:54 final size:53
Alignment explanation
Indices: 75634469--75634972 Score: 161
Period size: 54 Copynumber: 9.3 Consensus size: 53
75634459 TTAGTTTACC
* * *
75634469 AAATTACTGAAATACCCTCGACTTGTAAAATTACT-AAAGTACCCCCG-ATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAA-TA-CCCTGTA-TGATA
* * * * * *
75634523 AAATTACTTAAAAATCCTTGATTTGTAAAATTACCGAAATACCCTCAGTTTG-TA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCT--GTATGATA
* *
75634577 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACTCCTGTAAGATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATAC-CCTGTATGATA
* * ** ** * * *** *
75634631 GAATTAC-CATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT-TGATTTATA
1 AAATTACTGA-AATACCCTCGATTTGTAAAATTACTGAAATACCCTGT-A-TGATA
* * ** ** * *
75634685 GAATTAC-CATTTTACCCTCGATTTACAAAATTACTGAAATACCCT-TAGTTTACA
1 AAATTACTGA-AATACCCTCGATTTGTAAAATTACTGAAATACCCTGTA--TGATA
** * *** ** *
75634739 AAATTACCAAAATACCATCGATCAATAAAATTACCAAAATACCCTTGGTTTG-TA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCC-T-GTATGATA
** * * * *
75634793 AAATTACCAAAATACCC-CTGATTTGTGAAATTACCGAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCTC-GATTTGTAAAATTACTGAAATACCC-TGTATGATA
* ** * * *
75634847 GAATTACTGAAATACCC-CTG-TAGGGTAGAATTA-TCGAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCTC-GAT-TTGTAAAATTACT-GAAATACCC-TGTATGATA
* * * ** * * *
75634901 GAATTACCGAAATACCCTTG-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTAAAATTACTGAAATA-CCCTGTATGATA
* *
75634955 GAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
75634973 TCTAGGGTAG
Statistics
Matches: 361, Mismatches: 68, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.00
53 17 0.05
54 327 0.91
55 15 0.04
57 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (53 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTGTATGATA
Found at i:75634852 original size:81 final size:80
Alignment explanation
Indices: 75634794--75635043 Score: 299
Period size: 81 Copynumber: 3.1 Consensus size: 80
75634784 TGGTTTGTAA
* * *
75634794 AATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTGA-TAGTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
75634859 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
75634875 AATTATCGAAATACCCTTG-TAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAA
1 AATTACCGAAATACCCCTGATAGTG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAA
75634939 ATACCCCTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
** *
75634956 AATTACCGAAATACCCTTCT-AGGGTAGAAA-TACCGAAATACCCTTGTAGGGTAAAATTACCGA
1 AATTACCGAAATACCC--CTGATAGT-GAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGA
* * * *
75635019 GATACCCTTGTGGGGTAA
63 AATACCCCTGTAGGGTAG
75635037 AATTACC
1 AATTACC
75635044 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
79 3 0.02
80 1 0.01
81 137 0.93
82 2 0.01
83 3 0.02
84 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGATAGTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAAT
ACCCCTGTAGGGTAG
Found at i:75634868 original size:27 final size:27
Alignment explanation
Indices: 75634821--75635043 Score: 347
Period size: 27 Copynumber: 8.3 Consensus size: 27
75634811 TGATTTGTGA
75634821 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
75634848 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
75634875 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
75634902 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
75634929 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
75634956 AATTACCGAAATACCCTTCTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
75634983 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
75635010 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
75635037 AATTACC
1 AATTACC
75635044 ATTTTGCCCC
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:75635473 original size:31 final size:31
Alignment explanation
Indices: 75635438--75635516 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
75635428 TTCCATTCAC
* *
75635438 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
* *
75635469 ATTCTGATTTTGATTCTGTCACTTGATTCTA
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
*
75635500 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
75635517 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTA
Found at i:75635477 original size:6 final size:6
Alignment explanation
Indices: 75635438--75635525 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
75635428 TTCCATTCAC
* * *
75635438 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
75635487 -TCACTTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75635526 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75637482 original size:27 final size:27
Alignment explanation
Indices: 75637452--75637820 Score: 175
Period size: 27 Copynumber: 13.7 Consensus size: 27
75637442 TTAGTTTACC
* *
75637452 AAATTACTGATATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
75637479 AAATTAC-CAAAGAACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
*
75637506 AAATTACCT-AAATATCCTCGATTTGTA
1 AAATTA-CTGAAATACCCTCGATTTGTA
* *
75637533 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
75637560 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75637587 AAATTACTGAAATA--CTC-ATGTAAGATA
1 AAATTACTGAAATACCCTCGAT-T-TG-TA
* * ** **
75637614 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** * *
75637641 GAATTACTGTTTTACCCTCGATTTATT
1 AAATTACTGAAATACCCTCGATTTGTA
* * ** **
75637668 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *
75637695 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
** ***
75637722 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75637749 AAATTAC-CAAAGTACCC-CTGGTTTGTA
1 AAATTACTGAAA-TACCCTC-GATTTGTA
** * *
75637776 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
75637803 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
75637821 TGTAGGGTAG
Statistics
Matches: 265, Mismatches: 57, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
24 2 0.01
25 4 0.02
26 10 0.04
27 234 0.88
28 9 0.03
29 4 0.02
30 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:75637738 original size:54 final size:54
Alignment explanation
Indices: 75637500--75637822 Score: 229
Period size: 54 Copynumber: 6.0 Consensus size: 54
75637490 GAACCCCCGA
* * * * **
75637500 TTTATAAAATTACCTAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCAG
1 TTTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGG
** *** * * *
75637554 TTTGCAAAATTATTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCAT-G
1 TTTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGG
** * *** * * *** * *
75637607 TAAGATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGA
1 T-TTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGG
** *** *
75637662 TTTATTGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGG
** * *
75637716 TTTATAAAATTACCAAAATACCCTCGATCAATAAAATTAC-CAAAGTACCCCTGG
1 TTTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAA-TACCCTTGG
* * * *
75637770 TTTGTAAAATTACCAAAATACCC-CTAATTTGTGAAATTACTGAAATACCCTTG
1 TTTATAAAATTACCAAAATACCCTC-GATTTATAAAATTACTGAAATACCCTTG
75637823 TAGGGTAGAA
Statistics
Matches: 206, Mismatches: 58, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
53 6 0.03
54 196 0.95
55 4 0.02
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGG
Found at i:75637842 original size:27 final size:27
Alignment explanation
Indices: 75637804--75638053 Score: 313
Period size: 27 Copynumber: 9.3 Consensus size: 27
75637794 TAATTTGTGA
*
75637804 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** *
75637831 AATAACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
75637858 AATTATCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
75637885 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
75637912 AATTACTGAAATTA-CCTTGTAGGGTAG
1 AATTACCGAAA-TACCCTTGTAGGGTAG
*
75637939 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
75637966 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
75637993 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
75638020 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
75638047 AATTACC
1 AATTACC
75638054 ATTTTACCCC
Statistics
Matches: 199, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 195 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:75638065 original size:54 final size:54
Alignment explanation
Indices: 75637773--75638053 Score: 286
Period size: 54 Copynumber: 5.2 Consensus size: 54
75637763 CCCCTGGTTT
* **
75637773 GTAAAATTACCAAAATACCCCTA-ATTTGT-GAAATTA-CTGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTATA-GGGTAG-AATTATC-GAAATACCCTTGTAGG
* * ** * *
75637827 GTAGAATAACTAAAATACCCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGG
* * *
75637881 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTA-CTGAAATTA-CCTTGTAGG
1 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATC-GAAA-TACCCTTGTAGG
* * * * * *
75637935 GTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGG
1 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGG
* *
75637989 GTAGAAA-TACCGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTGTGGG
1 GTA-AAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGG
75638043 GTAAAATTACC
1 GTAAAATTACC
75638054 ATTTTACCCC
Statistics
Matches: 194, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
53 6 0.03
54 180 0.93
55 8 0.04
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGG
Found at i:75638479 original size:6 final size:6
Alignment explanation
Indices: 75638448--75638526 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
75638438 TTGCATTCAC
* *
75638448 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75638497 -TCACTTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCT
75638527 AGTTTTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.82
7 6 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75638483 original size:31 final size:31
Alignment explanation
Indices: 75638448--75638526 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
75638438 TTGCATTCAC
* *
75638448 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
75638479 ATTCTGATTCTGATTCTGTCACTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
75638510 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75638527 AGTTTTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:75643743 original size:21 final size:21
Alignment explanation
Indices: 75643717--75643777 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
75643707 CCCATATGGT
75643717 CCGTGTGACCTTGGGACACGG
1 CCGTGTGACCTTGGGACACGG
75643738 CCGTGTGACCTTGGGACACGG
1 CCGTGTGACCTTGGGACACGG
*
75643759 CCGTGTGACCCTGGGACAC
1 CCGTGTGACCTTGGGACAC
75643778 ACCCATGTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (21 bp):
CCGTGTGACCTTGGGACACGG
Found at i:75646057 original size:42 final size:42
Alignment explanation
Indices: 75645998--75646086 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
75645988 TTAGGGTTAC
* *
75645998 TGAGACTATGTGTAAGACCATATCTGGGATACGGCATCAATA
1 TGAGACTATGTGGAAGACCATACCTGGGATACGGCATCAATA
* *
75646040 TGAGACT-TCGTGGAAGACCATACCTGGGATATGGCATCGATA
1 TGAGACTAT-GTGGAAGACCATACCTGGGATACGGCATCAATA
75646082 TGAGA
1 TGAGA
75646087 TTTTTTGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (42 bp):
TGAGACTATGTGGAAGACCATACCTGGGATACGGCATCAATA
Found at i:75646099 original size:42 final size:42
Alignment explanation
Indices: 75646008--75646161 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 42
75645998 TGAGACTATG
* * * *
75646008 TGTAAGACCATATCTGGGATACGGCATCAATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * **
75646050 TGGAAGACCATACCTGGGATATGGCATCGATATGAGATTTTT
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
** * * * *
75646092 TGTAAGACCATAGATGGGCTATTGGCTTCGATACGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
75646135 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
75646162 TGGTATGGTA
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
42 57 0.63
43 34 0.37
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:75652078 original size:40 final size:40
Alignment explanation
Indices: 75652029--75652131 Score: 107
Period size: 40 Copynumber: 2.6 Consensus size: 40
75652019 GAAAACAAAG
* * * * *
75652029 GCCATTATAGATCGAGCATTAGCAGTGCTTTTTGAAAAAT
1 GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
* * *
75652069 GCCACTATAGAACGAGAATTAGAAGCGCTTTCTAAAAAAC
1 GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
* **
75652109 GGCACTATAGATATAGCATTAGC
1 GCCACTATAGATCGAGCATTAGC
75652132 GACCCCGCTA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (40 bp):
GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
Found at i:75652288 original size:40 final size:40
Alignment explanation
Indices: 75652228--75652372 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
75652218 TTTAGTGGCG
*
75652228 TTAGTGGCGCTTTTTGAAAAACGCTGCTATAGATCAAGCA
1 TTAGCGGCGCTTTTTGAAAAACGCTGCTATAGATCAAGCA
* *
75652268 TTAGCGGCGCTTTTTGAAAAAC-ATCGCTATAGAT-AGAGAA
1 TTAGCGGCGCTTTTTGAAAAACGCT-GCTATAGATCA-AGCA
* * * ** * *
75652308 TTAGCGGTGCTTTTTAAAAAAATGCCACTATAGGTCAACCA
1 TTAGCGGCGCTTTTT-GAAAAACGCTGCTATAGATCAAGCA
**
75652349 TTAGCGGCGCAATTTGAAAAACGC
1 TTAGCGGCGCTTTTTGAAAAACGC
75652373 CGCAAAAAAC
Statistics
Matches: 83, Mismatches: 17, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
39 2 0.02
40 54 0.65
41 26 0.31
42 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTGAAAAACGCTGCTATAGATCAAGCA
Found at i:75652475 original size:195 final size:196
Alignment explanation
Indices: 75652139--75652523 Score: 443
Period size: 195 Copynumber: 2.0 Consensus size: 196
75652129 AGCGACCCCG
* * ** * * * * *
75652139 CTATAGGTCGACCATTAGTAGCGCTTTTTGAAAAATGTCGTAAAAAAGCTAAGCACAACGAATTC
1 CTATAGGTCAACCATTAGCAGCGCAATTTGAAAAACGCCGCAAAAAAGCTAAGCACAAAGAAGTC
* * * *
75652204 GTTTTATGTTGAGCTTTAGTGGCGTTAGTGGCGCTTTTTGAAAAACGCTGCTATAGATCAAGCAT
66 GTTTTATGTTGAGCTTTAGTGGCGTTAGCGACGCTTTTTGAAAAACACTACTATAGATCAAGCAT
* * *
75652269 TAGCGGCGC-TTTTTGAAAAACATCGCTATAGATAGAGAATTAGCGGTGCTTTTTAAAAAAATGC
131 TAGCAGCGCTTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCAGTG-TTTTTAAAAAAATGC
75652333 CA
195 CA
* **
75652335 CTATAGGTCAACCATTAGCGGCGCAATTTGAAAAACGCCGCAAAAAA-CTAAGCACAAAGCCGTC
1 CTATAGGTCAACCATTAGCAGCGCAATTTGAAAAACGCCGCAAAAAAGCTAAGCACAAAGAAGTC
* * * * * * * *
75652399 GTTTTTTTTTTAGCTTTAGTGGCTTTAGCGATGCTTTTTGACAAACAAC-ACTGTAGATCGAGCA
66 GTTTTATGTTGAGCTTTAGTGGCGTTAGCGACGCTTTTTGAAAAAC-ACTACTATAGATCAAGCA
* * * * *
75652463 TTAGCAGCGCTTTTTTGAAAAACGCCGCTATAGGTTGAGCATTAGCAGTGTTTTTCAAAAA
130 TTAGCAGCGCTTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCAGTGTTTTTAAAAAA
75652524 GCGCCGCAAA
Statistics
Matches: 155, Mismatches: 32, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
195 82 0.53
196 73 0.47
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (196 bp):
CTATAGGTCAACCATTAGCAGCGCAATTTGAAAAACGCCGCAAAAAAGCTAAGCACAAAGAAGTC
GTTTTATGTTGAGCTTTAGTGGCGTTAGCGACGCTTTTTGAAAAACACTACTATAGATCAAGCAT
TAGCAGCGCTTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCAGTGTTTTTAAAAAAATGCC
A
Found at i:75652800 original size:7 final size:7
Alignment explanation
Indices: 75652779--75652888 Score: 55
Period size: 7 Copynumber: 15.4 Consensus size: 7
75652769 TTAATTATCA
*
75652779 TTATAGT
1 TTATGGT
*
75652786 TTAGGGT
1 TTATGGT
75652793 TTATGGT
1 TTATGGT
75652800 TTATGGT
1 TTATGGT
* *
75652807 ATATGAT
1 TTATGGT
*
75652814 TTAGGGT
1 TTATGGT
*
75652821 TTAAGGT
1 TTATGGT
*
75652828 TTAAGAGT
1 TTATG-GT
75652836 TACTAT--T
1 T--TATGGT
*
75652843 TTAAGGT
1 TTATGGT
**
75652850 TTATGAA
1 TTATGGT
75652857 TTATGGGT
1 TTAT-GGT
*
75652865 TTA-GAGA
1 TTATG-GT
75652872 TTATGGT
1 TTATGGT
75652879 TTATGGT
1 TTATGGT
75652886 TTA
1 TTA
75652889 ACAGTTGGTG
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
5 2 0.03
6 1 0.01
7 64 0.83
8 8 0.10
10 2 0.03
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:75652867 original size:22 final size:21
Alignment explanation
Indices: 75652793--75652889 Score: 61
Period size: 22 Copynumber: 4.5 Consensus size: 21
75652783 AGTTTAGGGT
* * *
75652793 TTATGGTTTATGGTATATGAT
1 TTATGGTTTAAGGTTTATGAA
* * *
75652814 TTAGGGTTTAAGGTTTAAGAG
1 TTATGGTTTAAGGTTTATGAA
**
75652835 TTACTATTTTAAGGTTTATGAA
1 TTA-TGGTTTAAGGTTTATGAA
* **
75652857 TTATGGGTTT-AGAGATTATGGT
1 TTAT-GGTTTAAG-GTTTATGAA
75652879 TTATGGTTTAA
1 TTATGGTTTAA
75652890 CAGTTGGTGT
Statistics
Matches: 57, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
21 27 0.47
22 30 0.53
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (21 bp):
TTATGGTTTAAGGTTTATGAA
Found at i:75652881 original size:14 final size:15
Alignment explanation
Indices: 75652847--75652883 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
75652837 ACTATTTTAA
75652847 GGTTTATGAATTATG
1 GGTTTATGAATTATG
75652862 GGTTTA-GAGATTAT-
1 GGTTTATGA-ATTATG
75652876 GGTTTATG
1 GGTTTATG
75652884 GTTTAACAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (15 bp):
GGTTTATGAATTATG
Found at i:75653002 original size:7 final size:7
Alignment explanation
Indices: 75652898--75653003 Score: 72
Period size: 7 Copynumber: 14.9 Consensus size: 7
75652888 AACAGTTGGT
*
75652898 GTTTAAG
1 GTTTAGG
75652905 GTTTAGG
1 GTTTAGG
*
75652912 AGTTAAGG
1 -GTTTAGG
*
75652920 GTTAAGG
1 GTTTAGG
*
75652927 GTTAAGG
1 GTTTAGG
75652934 G-TTAGAG
1 GTTTAG-G
*
75652941 GTTTATG
1 GTTTAGG
*
75652948 GTTTAGA
1 GTTTAGG
* *
75652955 GTCTAAG
1 GTTTAGG
*
75652962 GTTTA-T
1 GTTTAGG
*
75652968 ATTTAGG
1 GTTTAGG
75652975 GTTTAGAG
1 GTTTAG-G
75652983 GTTTAGAG
1 GTTTAG-G
75652991 GTTTAGG
1 GTTTAGG
75652998 GTTTAG
1 GTTTAG
75653004 ATTAATTAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
6 7 0.09
7 49 0.61
8 24 0.30
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:75655077 original size:33 final size:31
Alignment explanation
Indices: 75655035--75655107 Score: 85
Period size: 33 Copynumber: 2.3 Consensus size: 31
75655025 ATATTTTAAA
*
75655035 ATATGTATAATTAAATAAAAAAT-AAAATTTCAT
1 ATATATATAATTAAAT--AAAATCAAAATTT-AT
*
75655068 ATATATATAATTAAATTAAATCAAAATTTAT
1 ATATATATAATTAAATAAAATCAAAATTTAT
75655099 ATATCATAT
1 ATAT-ATAT
75655108 TATTTTCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 10 0.28
32 11 0.31
33 15 0.42
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (31 bp):
ATATATATAATTAAATAAAATCAAAATTTAT
Found at i:75656392 original size:9 final size:9
Alignment explanation
Indices: 75656378--75656495 Score: 75
Period size: 9 Copynumber: 13.1 Consensus size: 9
75656368 TATATCCTAT
75656378 CATAACTTA
1 CATAACTTA
75656387 CATAACTTA
1 CATAACTTA
* *
75656396 AAAAACTTA
1 CATAACTTA
75656405 CATAA--TA
1 CATAACTTA
*
75656412 CATAAATATATA
1 CAT-AA-CT-TA
75656424 TCATAACTTA
1 -CATAACTTA
75656434 CATAA--TA
1 CATAACTTA
*
75656441 CATAA-ATA
1 CATAACTTA
* * *
75656449 TATATCATA
1 CATAACTTA
75656458 TCATAACTTA
1 -CATAACTTA
75656468 CATAACTTA
1 CATAACTTA
*
75656477 CAAAACTTA
1 CATAACTTA
*
75656486 CTTAACTTA
1 CATAACTTA
75656495 C
1 C
75656496 GTAATACATA
Statistics
Matches: 87, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
7 12 0.14
8 7 0.08
9 52 0.60
10 8 0.09
11 1 0.01
12 4 0.05
13 3 0.03
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:75656472 original size:34 final size:29
Alignment explanation
Indices: 75656399--75656457 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75656389 TAACTTAAAA
75656399 AACTTACATAATACATAAATATATATCAT
1 AACTTACATAATACATAAATATATATCAT
75656428 AACTTACATAATACATAAATATATATCAT
1 AACTTACATAATACATAAATATATATCAT
75656457 A
1 A
75656458 TCATAACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (29 bp):
AACTTACATAATACATAAATATATATCAT
Found at i:75663427 original size:40 final size:40
Alignment explanation
Indices: 75663382--75663548 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75663372 CGGAATATAA
75663382 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75663422 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75663462 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75663502 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75663541 CCGGATAT
1 CCGGATAT
75663549 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75663532 original size:80 final size:79
Alignment explanation
Indices: 75663382--75663548 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
75663372 CGGAATATAA
* *
75663382 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
75663447 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
75663462 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
75663524 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
75663541 CCGGATAT
1 CCGGATAT
75663549 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:75664391 original size:17 final size:19
Alignment explanation
Indices: 75664368--75664413 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75664358 AAGAAGCATG
75664368 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75664386 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75664404 AATCATGCTC
1 AATCATGCTC
75664414 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75671409 original size:40 final size:40
Alignment explanation
Indices: 75671364--75671530 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
75671354 CGGAATATAA
75671364 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75671404 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75671444 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75671484 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75671523 CCGGATAT
1 CCGGATAT
75671531 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75671514 original size:80 final size:79
Alignment explanation
Indices: 75671380--75671530 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
75671370 ATAATCACGT
*
75671380 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
75671445 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
75671460 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
75671523 CCGGATAT
64 CCGGATAT
75671531 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:75672375 original size:17 final size:19
Alignment explanation
Indices: 75672352--75672397 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75672342 AAGAAGCATG
75672352 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75672370 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75672388 AATCATGCTC
1 AATCATGCTC
75672398 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75674273 original size:94 final size:92
Alignment explanation
Indices: 75673992--75674348 Score: 339
Period size: 94 Copynumber: 3.8 Consensus size: 92
75673982 CCAATGCCAA
* * * *
75673992 GTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGCCGATGCCATGTCACAGACATGGTC
1 GTCCCAGACAT-GTCTTACACTAGC-ACTCATC-TCTA-GCCGATGCCATGTCCCAGACATGGTC
** * *
75674056 TTACACAAGCTCTCATATGTACGTGCTGATGCAT
62 TTACACTGGCTATTATATGT--G-GCTGATGCAT
* *
75674090 GTCCCAGACATGTCTTACACTAGCACTTGCA-CT-TAGCTGATG-CATGTCCCAGACA-CGTCTT
1 GTCCCAGACATGTCTTACACTAGCAC-T-CATCTCTAGCCGATGCCATGTCCCAGACATGGTCTT
* * *
75674151 ACACTGGCTATCT-TCATCGAGTCCGATGCAT
64 ACACTGGCTAT-TAT-AT-GTGGCTGATGCAT
* * * * * *
75674182 TTCCCAAATATGTCTTATACTGGCGCTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTA
1 GTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTCTTA
75674247 CACTGGCTATTATAATGTGGCTGATGCAT
65 CACTGGCTATTAT-ATGTGGCTGATGCAT
* * *
75674276 GTCCTAGACATGTCTTACACTAGCCCTCGTCTCTATGCCGATGCCATGTCCCAGACATGGTCTTA
1 GTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTCTTA
75674341 CACTGGCT
65 CACTGGCT
75674349 CTCACATAAC
Statistics
Matches: 213, Mismatches: 34, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
90 2 0.01
91 3 0.01
92 30 0.14
93 21 0.10
94 102 0.48
95 26 0.12
96 2 0.01
97 13 0.06
98 13 0.06
99 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
GTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACATGGTCTTAC
ACTGGCTATTATATGTGGCTGATGCAT
Found at i:75674324 original size:47 final size:47
Alignment explanation
Indices: 75673992--75674351 Score: 234
Period size: 47 Copynumber: 7.6 Consensus size: 47
75673982 CCAATGCCAA
* * * *
75673992 GTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTC-TCTATGCCGATG-CAT
* * * * * *
75674041 GTCACAGACATGGTCTTACACAAGCTCTCATATGTACGTGCTGATGCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTCTCTA--TGCCGATGCAT
* * * *
75674090 GTCCCAGACAT-GTCTTACACTAGCACT-TGCACT-TAGCTGATGCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTCTCTAT-GCCGATGCAT
* * * *
75674135 GTCCCAGACA-CGTCTTACACTGGCTATCTTCATCGA-GTCCGATGCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTC-TCTATG-CCGATGCAT
* * * * * * * *
75674182 TTCCCAAATAT-GTCTTATACTGGCGCTCATCTCTACGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTCTCTATGCCGATG-CAT
* * * * * *
75674229 GTCCCAGACATGGTCTTACACTGGCTAT-TATAATGT-GGCTGATGCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCT-T-CTCTATGCCGATGCAT
* * *
75674276 GTCCTAGACAT-GTCTTACACTAGCCCTCGTCTCTATGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTCTTCTCTATGCCGATG-CAT
*
75674323 GTCCCAGACATGGTCTTACACTGGCTCTC
1 GTCCCAGACATGGTCTTACACTAGCTCTC
75674352 ACATAACCCA
Statistics
Matches: 237, Mismatches: 56, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
44 1 0.00
45 35 0.15
46 32 0.14
47 71 0.30
48 51 0.22
49 41 0.17
50 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GTCCCAGACATGGTCTTACACTAGCTCTCTTCTCTATGCCGATGCAT
Found at i:75674328 original size:141 final size:139
Alignment explanation
Indices: 75673992--75674352 Score: 334
Period size: 141 Copynumber: 2.6 Consensus size: 139
75673982 CCAATGCCAA
* * * * * * *
75673992 GTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCACAGACATGGTCT
1 GTCCCAGACA-CGTCTTACACTAGCCATCGTCATCGAGTCCGATG-CATGTCCCAAACATGGTCT
** * * * * * *
75674057 TACACAAGCTCTCATATGTACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTTGCAC
64 TACACTGGCGCTCATCTCTAC--GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTACAA
75674122 TTAGCTGATGCAT
127 TTAGCTGATGCAT
* * * * *
75674135 GTCCCAGACACGTCTTACACTGGCTATCTTCATCGAGTCCGATGCATTTCCCAAATAT-GTCTTA
1 GTCCCAGACACGTCTTACACTAGCCATCGTCATCGAGTCCGATGCATGTCCCAAACATGGTCTTA
* * *
75674199 TACTGGCGCTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TTATAAT
66 CACTGGCGCTCATCTCTACGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTTACAAT
*
75674263 GTGGCTGATGCAT
128 -TAGCTGATGCAT
* * * * *
75674276 GTCCTAGACATGTCTTACACTAGCCCTCGTC-TCTA-TGCCGATGCCATGTCCCAGACATGGTCT
1 GTCCCAGACACGTCTTACACTAGCCATCGTCATCGAGT-CCGATG-CATGTCCCAAACATGGTCT
*
75674339 TACACTGGCTCTCA
64 TACACTGGCGCTCA
75674353 CATAACCCAA
Statistics
Matches: 181, Mismatches: 30, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
138 6 0.03
139 15 0.08
140 44 0.24
141 58 0.32
142 48 0.27
143 10 0.06
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (139 bp):
GTCCCAGACACGTCTTACACTAGCCATCGTCATCGAGTCCGATGCATGTCCCAAACATGGTCTTA
CACTGGCGCTCATCTCTACGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTACAATTAG
CTGATGCAT
Found at i:75680572 original size:55 final size:55
Alignment explanation
Indices: 75680501--75680607 Score: 128
Period size: 55 Copynumber: 1.9 Consensus size: 55
75680491 TGTGTAACAC
* * *
75680501 TGACTTTAGAGCACGGCCATGACACATGCCTGTGTGGCCTAC-CAGTGGACAAAAT
1 TGACTTTAGAGCACGGCCATGACACACGCCCGTGTAGCCTACTC-GTGGACAAAAT
* * *
75680556 TGACTTATAGA-CACGGCTATGGCCCACGCCCGTGTAGCCTACTCGTGGACAA
1 TGACTT-TAGAGCACGGCCATGACACACGCCCGTGTAGCCTACTCGTGGACAA
75680608 TGCTAACTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
55 39 0.89
56 5 0.11
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (55 bp):
TGACTTTAGAGCACGGCCATGACACACGCCCGTGTAGCCTACTCGTGGACAAAAT
Found at i:75681505 original size:47 final size:46
Alignment explanation
Indices: 75681445--75681614 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 46
75681435 TACGCTTAGC
*
75681445 CGATGCATGTCCCAGACACGTCTTACACTGGCTATCTTCATCGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCTTCATCGAGG
* ** * * *
75681491 TCGATGCATGTCCCAGACATGTCTTATACTGGCGCTCATC-TCTACGC
1 -CGATGCATGTCCCAGACATGTCTTACACTGGCTATCTTCATCGA-GG
* * *
75681538 CGATGCCATGTCGCAGACATGGTCTTACACTGGCTAT-TATAAT-GTGG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCT-TCATCGAGG
75681585 CTGATGCATGTCCCAGACATGTCTTACACT
1 C-GATGCATGTCCCAGACATGTCTTACACT
75681615 AGCCCTCGTC
Statistics
Matches: 100, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 18 0.18
47 63 0.63
48 18 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCTTCATCGAGG
Found at i:75681592 original size:94 final size:94
Alignment explanation
Indices: 75681443--75681661 Score: 286
Period size: 94 Copynumber: 2.4 Consensus size: 94
75681433 ATTACGCTTA
* *
75681443 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCTTCATCGAGGTCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTAATCGAGGTCGATGCATGTCCCA
* * *
75681506 GACATGTCTTATACTGGCGCTCATCTCTAC
66 GACATGTCTTACACTAGCCCTCATCTC-AC
* *
75681536 GCCGATGCCATGTCGCAGACATGGTCTTACACTGGCTAT-TATAAT-GTGG-CTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCT-TAATCGAGGTC-GATGCATGTCC
* *
75681598 CAGACATGTCTTACACTAGCCCTCGTCTCAT
64 CAGACATGTCTTACACTAGCCCTCATCTCAC
*
75681629 GCCAATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
75681662 AGCTCTCACA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
93 40 0.36
94 52 0.47
95 19 0.17
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTAATCGAGGTCGATGCATGTCCCA
GACATGTCTTACACTAGCCCTCATCTCAC
Found at i:75681680 original size:46 final size:45
Alignment explanation
Indices: 75681591--75681681 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 45
75681581 GTGGCTGATG
* *
75681591 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCATGCCAATGC
1 CATGTCCCAGACATGTCTTACACTAG-CCTCGTCACATCCCAATGC
75681637 CATGTCCCAGACATGGTCTTACACTAG-CTC-TCACATAACCCAATG
1 CATGTCCCAGACAT-GTCTTACACTAGCCTCGTCACAT--CCCAATG
75681682 TTATGGCATG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
44 5 0.12
45 3 0.08
46 20 0.50
47 12 0.30
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.25
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCCTCGTCACATCCCAATGC
Found at i:75685949 original size:13 final size:14
Alignment explanation
Indices: 75685933--75685961 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75685923 TTTTAAATAT
75685933 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
75685946 TTATAATGGTTTAA
1 TTATAATGGTTTAA
75685960 TT
1 TT
75685962 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:75686388 original size:45 final size:45
Alignment explanation
Indices: 75686319--75686408 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
75686309 CAGTTTAGCA
* * *
75686319 AATTGCTCAACTTAAAGCGGAGGCAGCATCAAGAGAAGCAGAGGT
1 AATTACTCAAATTAAAGCGGAGGCAACATCAAGAGAAGCAGAGGT
* *
75686364 AATTACTCAAATTAAGGTGGAGGCAACATCAAGAGAAGCAGAGGT
1 AATTACTCAAATTAAAGCGGAGGCAACATCAAGAGAAGCAGAGGT
75686409 TTAAATAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.17
Consensus pattern (45 bp):
AATTACTCAAATTAAAGCGGAGGCAACATCAAGAGAAGCAGAGGT
Found at i:75686723 original size:41 final size:40
Alignment explanation
Indices: 75686678--75686784 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
75686668 AACGCTGCAA
* *
75686678 AAAGATAGAAC-TATAGTGGCGTTTTTGTGAAAAATGCCGCT
1 AAAGATAGAACAT-TAGCGGCGCTTTT-TGAAAAATGCCGCT
* * * *
75686719 AAAGATCGAGCATTCGCGGTGCTTTTTGAAAAATGCCGCT
1 AAAGATAGAACATTAGCGGCGCTTTTTGAAAAATGCCGCT
* *
75686759 AAAGATCGAGCATTAGCGGCGCTTTT
1 AAAGATAGAACATTAGCGGCGCTTTT
75686785 CAGAAAACGC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 38 0.67
41 18 0.32
42 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (40 bp):
AAAGATAGAACATTAGCGGCGCTTTTTGAAAAATGCCGCT
Found at i:75686751 original size:40 final size:41
Alignment explanation
Indices: 75686695--75686784 Score: 146
Period size: 40 Copynumber: 2.2 Consensus size: 41
75686685 GAACTATAGT
* *
75686695 GGCGTTTTTGTGAAAAATGCCGCTAAAGATCGAGCATTCGC
1 GGCGCTTTTGTGAAAAATGCCGCTAAAGATCGAGCATTAGC
*
75686736 GGTGCTTTT-TGAAAAATGCCGCTAAAGATCGAGCATTAGC
1 GGCGCTTTTGTGAAAAATGCCGCTAAAGATCGAGCATTAGC
75686776 GGCGCTTTT
1 GGCGCTTTT
75686785 CAGAAAACGC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
GGCGCTTTTGTGAAAAATGCCGCTAAAGATCGAGCATTAGC
Found at i:75686875 original size:39 final size:40
Alignment explanation
Indices: 75686832--75686931 Score: 109
Period size: 39 Copynumber: 2.5 Consensus size: 40
75686822 ATTAGCAGCA
*
75686832 CTTTTTGAAAAATGCCG-CAATAGATCGAG-AATAACGGTG
1 CTTTTTGAAAAACGCCGTCAA-AGATCGAGCAATAACGGTG
* * *
75686871 CTTTTTGAAAAACGCCGTGAAAGATCGAGCATTAGCGGTG
1 CTTTTTGAAAAACGCCGTCAAAGATCGAGCAATAACGGTG
*
75686911 C-TTTTCAGAAAACGCCG-CAAA
1 CTTTTTGA-AAAACGCCGTCAAA
75686932 AAAATTTATT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
39 32 0.62
40 20 0.38
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTTTTGAAAAACGCCGTCAAAGATCGAGCAATAACGGTG
Found at i:75687277 original size:21 final size:21
Alignment explanation
Indices: 75687253--75687299 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
75687243 TAGGGTGTAA
75687253 GTTTATGGTCTAG-GATTTAGG
1 GTTTATGGTCT-GTGATTTAGG
* *
75687274 GTTTATGTTCTGTGATTTGGG
1 GTTTATGGTCTGTGATTTAGG
75687295 GTTTA
1 GTTTA
75687300 ATTTTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.15, C:0.04, G:0.32, T:0.49
Consensus pattern (21 bp):
GTTTATGGTCTGTGATTTAGG
Found at i:75687966 original size:7 final size:7
Alignment explanation
Indices: 75687933--75687958 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75687923 AATCTTCAAA
75687933 AAAAATT
1 AAAAATT
75687940 AAAAATT
1 AAAAATT
75687947 AAAAATT
1 AAAAATT
75687954 AAAAA
1 AAAAA
75687959 ACTTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:75688121 original size:20 final size:21
Alignment explanation
Indices: 75688079--75688128 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
75688069 ATTTTGAAAA
**
75688079 AAAAATAGAAAAAAATATGTT
1 AAAAATAGAAAAAAATAAATT
*
75688100 AAAAAT-GAAAAAATTAAATT
1 AAAAATAGAAAAAAATAAATT
75688120 AAACAATAG
1 AAA-AATAG
75688129 TGGCATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 14 0.58
21 9 0.38
22 1 0.04
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
AAAAATAGAAAAAAATAAATT
Found at i:75693490 original size:2 final size:2
Alignment explanation
Indices: 75693483--75693515 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
75693473 TGTGTATCTC
75693483 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
75693516 TTTTATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:75693716 original size:24 final size:22
Alignment explanation
Indices: 75693689--75693741 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 22
75693679 AATTAAACAT
75693689 AATATAATATTTAACATAGAAATA
1 AATATAATATTTAA-ATA-AAATA
*
75693713 AATATAATATTTAATTAAAATA
1 AATATAATATTTAAATAAAATA
75693735 AA-ATAAT
1 AATATAAT
75693742 TTTTTAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 5 0.18
22 7 0.25
23 2 0.07
24 14 0.50
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AATATAATATTTAAATAAAATA
Found at i:75693748 original size:18 final size:21
Alignment explanation
Indices: 75693680--75693750 Score: 60
Period size: 24 Copynumber: 3.3 Consensus size: 21
75693670 AATTTCAAAA
75693680 ATTAAACAT-AATATAATATTT
1 ATTAAA-ATAAATATAATATTT
*
75693701 AACATAGAAATAAATATAATATTT
1 -A-TTA-AAATAAATATAATATTT
75693725 AATTAAAATAAA-ATAAT-TTT
1 -ATTAAAATAAATATAATATTT
75693745 -TTAAAA
1 ATTAAAA
75693751 GGTCATGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
18 6 0.14
20 3 0.07
21 5 0.11
22 8 0.18
23 6 0.14
24 16 0.36
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (21 bp):
ATTAAAATAAATATAATATTT
Found at i:75693906 original size:44 final size:43
Alignment explanation
Indices: 75693748--75693905 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 43
75693738 TAATTTTTTA
* * *
75693748 AAAGGTCATGATTTTTAGTGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCGCT
* * * * *
75693791 AAAGGTAATAAATTTTAGTGGCGTTTTTGGGAAAAGCGCAGCT
1 AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCGCT
* * *
75693834 GAAGGTCATGACTTTTAGCGGCATTTTTTGGTAAAAGCGCCGCT
1 AAAGGTCATGACTTTTAGCGGC-GTTTTTGGGAAAAGCGCCGCT
*
75693878 AAAGGTTATGACTTTTAGCGGCGTTTTT
1 AAAGGTCATGACTTTTAGCGGCGTTTTT
75693906 TACAGCGTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 60 0.61
44 38 0.39
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.33
Consensus pattern (43 bp):
AAAGGTCATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCGCT
Found at i:75694289 original size:42 final size:43
Alignment explanation
Indices: 75694229--75694339 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 43
75694219 GGCTTTTGTA
75694229 AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTCTTG
1 AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTCTTG
* * * * * *
75694272 AG-AAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTTTG
1 AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTCTTG
* *
75694314 AGAAAAGCGCCGTTAAATGTAATGGT
1 AGAAAAGCGCCGCTAAAGGTAATGGT
75694340 CTTTGGTGGC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 36 0.64
43 20 0.36
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (43 bp):
AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTCTTG
Found at i:75694343 original size:43 final size:43
Alignment explanation
Indices: 75694229--75694518 Score: 188
Period size: 43 Copynumber: 6.8 Consensus size: 43
75694219 GGCTTTTGTA
* * * *
75694229 AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTCTTG
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* *
75694272 AG-AAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTTTG
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* * * * * **
75694314 AGAAAAGCGCCGTTAAATGTAATGGTCTTTGGTGGCATTTTTG
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* * * * * * * *
75694357 GGGAAAGCGCCGCTAAATGTCACGTTCTTTAGCGGCGTCTGTG
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* * * * * *
75694400 ATAAAAGCAG-CGCTAAAGGTCACGTTCTTTAGTGGCGTTTATG
1 AGAAAAGC-GCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* * * * ** * * *
75694443 TGAAAAGCGGCACTAAAGGTCACATTCTTTAGAGGCGTTTGTG
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
* * * * *
75694486 TGAAAAGTGCCACTAAAGGTCACGTTCTTTAGC
1 AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGC
75694519 AGCGCTTTTC
Statistics
Matches: 201, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
42 37 0.18
43 163 0.81
44 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (43 bp):
AGAAAAGCGCCGCTAAAGGTAACGGTCTTTAGCGGTGTTTTTG
Found at i:75694429 original size:86 final size:86
Alignment explanation
Indices: 75694273--75694517 Score: 269
Period size: 86 Copynumber: 2.8 Consensus size: 86
75694263 GTGTTCTTGA
* * * * * * *
75694273 GAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTTTGAGAAAAGCGCCGTTAAATGTAATG
1 GAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCACG
* * *
75694338 GTCTTTGGTGGCATTTTTGGG
66 TTCTTTAGTGGCATTTATGGG
* *
75694359 GAAAGCGCCGCTAAATGTCACGTTCTTTAGCGGCGTCTGTGATAAAAGCAG-CGCTAAAGGTCAC
1 GAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGATAAAAGC-GCCGCTAAAGGTCAC
* *
75694423 GTTCTTTAGTGGCGTTTATGTG
65 GTTCTTTAGTGGCATTTATGGG
* * * * * * *
75694445 AAAAGCGGCACTAAAGGTCACATTCTTTAGAGGCGTTTGTG-TGAAAAGTGCCACTAAAGGTCAC
1 GAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGAT-AAAAGCGCCGCTAAAGGTCAC
75694509 GTTCTTTAG
65 GTTCTTTAG
75694518 CAGCGCTTTT
Statistics
Matches: 133, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
85 2 0.02
86 130 0.98
87 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (86 bp):
GAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCACG
TTCTTTAGTGGCATTTATGGG
Found at i:75694472 original size:129 final size:128
Alignment explanation
Indices: 75694281--75694518 Score: 289
Period size: 129 Copynumber: 1.8 Consensus size: 128
75694271 GAGAAAGCGC
* * ** * *
75694281 CGCTAAAGGTCACGTTCTTTAGCGGTGTTTTTGAGAAAAGCGCCGTTAAATGTAATGGTCTTTGG
1 CGCTAAAGGTCACGTTCTTTAGCGGCGTTTATGAGAAAAGCGCCACTAAAGGTAAT-GTCTTTAG
* * * * *
75694346 TGGCATTTTTGGGGAAAGCGCCGCTAAATGTCACGTTCTTTAGCGGCGTCTGTGATAAAAGCAG
65 AGGCATTTGTGGGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGGCGTCTGTGATAAAAGCAG
* * *
75694410 CGCTAAAGGTCACGTTCTTTAGTGGCGTTTATGTGAAAAGCGGCACTAAAGGTCACAT-TCTTTA
1 CGCTAAAGGTCACGTTCTTTAGCGGCGTTTATGAGAAAAGCGCCACTAAAGGT-A-ATGTCTTTA
* * *
75694474 GAGGCGTTTGTGTGAAAAGTGCCACTAAAGGTCACGTTCTTTAGC
64 GAGGCATTTGTGGGAAAAGCGCCACTAAAGGTCACGTTCTTTAGC
75694519 AGCGCTTTTC
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
129 87 0.97
130 1 0.01
131 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (128 bp):
CGCTAAAGGTCACGTTCTTTAGCGGCGTTTATGAGAAAAGCGCCACTAAAGGTAATGTCTTTAGA
GGCATTTGTGGGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGGCGTCTGTGATAAAAGCAG
Found at i:75695117 original size:43 final size:43
Alignment explanation
Indices: 75695056--75695293 Score: 214
Period size: 43 Copynumber: 5.5 Consensus size: 43
75695046 GCTGTCTTGA
* * * *
75695056 AAACACCGCTAAAGAACGTTATCTTTAGCGGCACTTTTTGTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCAGCACTTTTTGTAC
* * * *
75695099 AAATGCCGCTAAAAAACGTGGCCTTTAGCAGCACTTTTTTTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCAGCACTTTTTGTAC
* * * * * *
75695142 AAACGCTGCTAAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCAGCAC-TTTTTGTAC
* * * *
75695186 AAACGCCACTAAAGAAAGTGGCCTTT--CACGACACTTTTTTTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCA-G-CACTTTTTGTAC
* *
75695229 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATCG--C
1 AAACGCCGCTAAAGAACGTGACCTTTAGCAGCACTTTT-T-GTAC
*
75695272 AAACGCCGCTAAAGAATGTGAC
1 AAACGCCGCTAAAGAACGTGAC
75695294 TCTAAGCAAC
Statistics
Matches: 161, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 122 0.76
44 36 0.22
45 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCAGCACTTTTTGTAC
Found at i:75695209 original size:87 final size:87
Alignment explanation
Indices: 75695056--75695266 Score: 259
Period size: 87 Copynumber: 2.4 Consensus size: 87
75695046 GCTGTCTTGA
* * * * * *
75695056 AAACACCGCTAAAGAACGTTATCTTTAGCGGCAC-TTTTTGTACAAATGCCGCTAAAAAACGTGG
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAAAAACGTGG
75695120 CCTTT-A-GCAGCACTTTTTTTAC
66 CCTTTCACG-A-CACTTTTTTTAC
* * * *
75695142 AAACGCTGCTAAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCCACTAAAGAAA-GTG
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAA-AAACGTG
75695206 GCCTTTCACGACACTTTTTTTAC
65 GCCTTTCACGACACTTTTTTTAC
* *
75695229 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTT
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT
75695267 ATCGCAAACG
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
86 27 0.25
87 73 0.69
88 5 0.05
89 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (87 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAAAAACGTGG
CCTTTCACGACACTTTTTTTAC
Found at i:75695307 original size:43 final size:43
Alignment explanation
Indices: 75695228--75695327 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
75695218 ACTTTTTTTA
* *
75695228 CAAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATCG
1 CAAACGCCGCTAAAGAACATGACCTTAAGCAACGCTTTTATCG
** * *
75695271 CAAACGCCGCTAAAGAATGTGA-CTCTAAGCAACGCTTTTTTTG
1 CAAACGCCGCTAAAGAACATGACCT-TAAGCAACGCTTTTATCG
*
75695314 CAAACGCCACTAAA
1 CAAACGCCGCTAAA
75695328 TATATGTTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 2 0.04
43 47 0.96
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
CAAACGCCGCTAAAGAACATGACCTTAAGCAACGCTTTTATCG
Found at i:75695307 original size:130 final size:129
Alignment explanation
Indices: 75695087--75695327 Score: 304
Period size: 130 Copynumber: 1.9 Consensus size: 129
75695077 TCTTTAGCGG
* * * * * *
75695087 CACTTTTTGTACAAATGCCGCTAAAAAACGTGGCCTTTAGCAGCACTTTTTTTACAAACGCTGCT
1 CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
* ** **
75695152 AAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
66 AAAGAACGTGACCTTAAGCAACGC-TTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
* * * *
75695217 CACTTTTTTTACAAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATCGCAAACGCCGCT
1 CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
* *
75695282 AAAGAATGTGA-CTCTAAGCAACGCTTTTTTTGCAAACGCCACTAAA
66 AAAGAACGTGACCT-TAAGCAACGCTTTTTTTACAAACGCCACTAAA
75695328 TATATGTTCT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
129 23 0.25
130 70 0.75
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (129 bp):
CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
AAAGAACGTGACCTTAAGCAACGCTTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
Found at i:75695311 original size:87 final size:87
Alignment explanation
Indices: 75695056--75695327 Score: 228
Period size: 86 Copynumber: 3.1 Consensus size: 87
75695046 GCTGTCTTGA
* * * * * * * * *
75695056 AAACACCGCTAAAGAACGTTATCTTTAGCGGCACTTTTTGT-ACAAATGCCGCTAAA-AAACGTG
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTTATCACAAACGCCACTAAAGAAA-GTG
* * * *
75695119 GCCTTTAGCAGCACTTTTTTTAC
65 GACTCTAACAACACTTTTTTTAC
* * * * * * *
75695142 AAACGCTGCTAAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCCACTAAAGAAAGTGG
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTTATCACAAACGCCACTAAAGAAAGTGG
* * * *
75695207 CCTTTCACGACACTTTTTTTAC
66 ACTCTAACAACACTTTTTTTAC
* * *
75695229 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGC-TTTTATCGCAAACGCCGCTAAAGAATGT-G
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTTATCACAAACGCCACTAAAGAAAGTGG
* *
75695292 ACTCTAAGCAACGCTTTTTTTGC
66 ACTCTAA-CAACACTTTTTTTAC
*
75695315 AAACGCCACTAAA
1 AAACGCCGCTAAA
75695328 TATATGTTCT
Statistics
Matches: 152, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
85 5 0.03
86 80 0.53
87 64 0.42
88 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (87 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTTATCACAAACGCCACTAAAGAAAGTGG
ACTCTAACAACACTTTTTTTAC
Found at i:75696251 original size:40 final size:40
Alignment explanation
Indices: 75696201--75696331 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
75696191 CGTTTGAATG
* *
75696201 AAAAATGCCGCTAAACAACGAGCATTAGCGGCGCTTTTCA
1 AAAAACGCCGCTAAACATCGAGCATTAGCGGCGCTTTTCA
* * *
75696241 AAAAACGCCGCTAAAGATCGAGTATTAGCTGCGCCTTTT-A
1 AAAAACGCCGCTAAACATCGAGCATTAGCGGCG-CTTTTCA
* * * * *
75696281 AAAAACGCCGCTAATGC-TCGATCTTTAGCGGCGCTTTACT
1 AAAAACGCCGCTAA-ACATCGAGCATTAGCGGCGCTTTTCA
75696321 AAAAACGCCGC
1 AAAAACGCCGC
75696332 AAAAAATTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.05
40 66 0.88
41 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (40 bp):
AAAAACGCCGCTAAACATCGAGCATTAGCGGCGCTTTTCA
Found at i:75696430 original size:75 final size:75
Alignment explanation
Indices: 75696303--75696486 Score: 262
Period size: 75 Copynumber: 2.5 Consensus size: 75
75696293 AATGCTCGAT
* *
75696303 CTTTAGCGGCGCTTTACTAAAAACGCCGCAAAA-AATTTAACACAACGCCGTCATTTTGTATTGA
1 CTTTAGCGGCGCTTT-TTAAAAACGCCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGA
75696367 GCCTTTAGTGG
65 GCCTTTAGTGG
* ** *
75696378 CTTTAGCGGTGCTTTTTAAAAACGCCGCAAAAGAATTTTGCAAAACGTCGTCATTTTGTATTGAG
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGAG
*
75696443 CTTTTAGTGG
66 CCTTTAGTGG
** *
75696453 CTTTAATGGCGCTTTTTAAAAACGCCGCTAAAGA
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCAAAAGA
75696487 TCGAGTATTA
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
74 16 0.16
75 81 0.84
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (75 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGAG
CCTTTAGTGG
Found at i:75696910 original size:22 final size:22
Alignment explanation
Indices: 75696885--75696929 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
75696875 GAGTTACTAT
*
75696885 TTTAAGGTTTATGGATAATGGG
1 TTTAAGGATTATGGATAATGGG
* * *
75696907 TTTAGGGATTATGGTTTATGGG
1 TTTAAGGATTATGGATAATGGG
75696929 T
1 T
75696930 GGTTTAAGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (22 bp):
TTTAAGGATTATGGATAATGGG
Found at i:75696954 original size:21 final size:21
Alignment explanation
Indices: 75696930--75696983 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
75696920 GTTTATGGGT
75696930 GGTTTAAGG-GTT-GGGGTTTAA
1 GGTTT-AGGTGTTAGGGG-TTAA
75696951 GGTTTAGGTGTTAGGGGTTAA
1 GGTTTAGGTGTTAGGGGTTAA
* *
75696972 GGGTTAGTTGTT
1 GGTTTAGGTGTT
75696984 CATGGTTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 3 0.10
21 22 0.76
22 4 0.14
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.41
Consensus pattern (21 bp):
GGTTTAGGTGTTAGGGGTTAA
Found at i:75697027 original size:14 final size:14
Alignment explanation
Indices: 75696992--75697042 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
75696982 TTCATGGTTC
*
75696992 AGGGTTTATGTTTT
1 AGGGTTTATGATTT
* *
75697006 AAGATTTATGATTT
1 AGGGTTTATGATTT
75697020 AGGGTTTATGGA-TT
1 AGGGTTTAT-GATTT
75697034 AGGAGTTTA
1 AGG-GTTTA
75697043 GGGTTTAGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 23 0.77
15 7 0.23
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (14 bp):
AGGGTTTATGATTT
Found at i:75697165 original size:7 final size:7
Alignment explanation
Indices: 75697144--75697253 Score: 51
Period size: 7 Copynumber: 15.4 Consensus size: 7
75697134 TTAATTATCA
*
75697144 TTATAGT
1 TTATGGT
*
75697151 TTAGGGT
1 TTATGGT
75697158 TTATGGT
1 TTATGGT
*
75697165 TTAGGGT
1 TTATGGT
*
75697172 ATATGGT
1 TTATGGT
75697179 TTA-GGAT
1 TTATGG-T
**
75697186 TTAAAGT
1 TTATGGT
* **
75697193 GTATGAA
1 TTATGGT
**
75697200 TTACTATT
1 TTA-TGGT
*
75697208 TTAAGGT
1 TTATGGT
*
75697215 TTATGGA
1 TTATGGT
75697222 TTATGGGT
1 TTAT-GGT
* *
75697230 TTAGGGA
1 TTATGGT
75697237 TTATGGT
1 TTATGGT
75697244 TTATGGT
1 TTATGGT
75697251 TTA
1 TTA
75697254 AGGGCAGGGG
Statistics
Matches: 72, Mismatches: 27, Indels: 8
0.67 0.25 0.07
Matches are distributed among these distances:
6 2 0.03
7 60 0.83
8 10 0.14
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:75697166 original size:14 final size:14
Alignment explanation
Indices: 75697144--75697188 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
75697134 TTAATTATCA
*
75697144 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
75697158 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
75697172 ATATGGTTTAGGAT
1 TTATGGTTTAGGGT
75697186 TTA
1 TTA
75697189 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:75697232 original size:15 final size:14
Alignment explanation
Indices: 75697212--75697249 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
75697202 ACTATTTTAA
75697212 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
75697226 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
75697241 GGTTTATGG
1 GGTTTATGG
75697250 TTTAAGGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:75697232 original size:22 final size:21
Alignment explanation
Indices: 75697207--75697256 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
75697197 GAATTACTAT
*
75697207 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
75697229 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
75697250 TTTAAGG
1 TTTAAGG
75697257 GCAGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:75698069 original size:8 final size:8
Alignment explanation
Indices: 75698033--75698091 Score: 50
Period size: 8 Copynumber: 7.1 Consensus size: 8
75698023 TTTATATGTT
75698033 AATTTAAA
1 AATTTAAA
75698041 AATTATAAAA
1 AATT-T-AAA
*
75698051 AACTTCAAAA
1 AA-TT-TAAA
*
75698061 AAATT-AA
1 AATTTAAA
75698068 AATTTAAA
1 AATTTAAA
75698076 AATTT-AA
1 AATTTAAA
75698083 AATTTAAA
1 AATTTAAA
75698091 A
1 A
75698092 TTAAAAGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
7 13 0.32
8 14 0.34
9 2 0.05
10 10 0.24
11 2 0.05
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (8 bp):
AATTTAAA
Found at i:75698074 original size:7 final size:7
Alignment explanation
Indices: 75698059--75698097 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
75698049 AAAACTTCAA
*
75698059 AAAAATT
1 AAAATTT
75698066 AAAATTT
1 AAAATTT
75698073 AAAAATTT
1 -AAAATTT
75698081 AAAATTT
1 AAAATTT
75698088 AAAA-TT
1 AAAATTT
75698094 AAAA
1 AAAA
75698098 GATAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
6 6 0.20
7 17 0.57
8 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
AAAATTT
Found at i:75698078 original size:14 final size:14
Alignment explanation
Indices: 75698059--75698097 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
75698049 AAAACTTCAA
75698059 AAAAATTAAAATTT
1 AAAAATTAAAATTT
75698073 AAAAATTTAAAATTT
1 AAAAA-TTAAAATTT
75698088 -AAAATTAAAA
1 AAAAATTAAAA
75698098 GATAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.25
14 9 0.38
15 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAATTAAAATTT
Found at i:75698082 original size:15 final size:15
Alignment explanation
Indices: 75698058--75698091 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
75698048 AAAAACTTCA
75698058 AAAAAATTAAAATTT
1 AAAAAATTAAAATTT
*
75698073 AAAAATTTAAAATTT
1 AAAAAATTAAAATTT
75698088 AAAA
1 AAAA
75698092 TTAAAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAAATTAAAATTT
Found at i:75698311 original size:41 final size:41
Alignment explanation
Indices: 75698265--75698350 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
75698255 AAAAAAATTT
* *
75698265 AAAATTAAGCAATAGTGGCGTTTTTAG-GTAAAATGCCACAA
1 AAAATTAAGCAATAATGGCGTTTTTAGTGGAAAA-GCCACAA
* ** *
75698306 AAAATTGAGTTATAATGGCGTTTTTAGTGGAAAAGCCTCAA
1 AAAATTAAGCAATAATGGCGTTTTTAGTGGAAAAGCCACAA
75698347 AAAA
1 AAAA
75698351 AGGAAATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 33 0.87
42 5 0.13
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (41 bp):
AAAATTAAGCAATAATGGCGTTTTTAGTGGAAAAGCCACAA
Found at i:75703915 original size:11 final size:11
Alignment explanation
Indices: 75703899--75703923 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75703889 ATTTGATACT
75703899 GAATTTTAATA
1 GAATTTTAATA
75703910 GAATTTTAATA
1 GAATTTTAATA
75703921 GAA
1 GAA
75703924 AATTTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (11 bp):
GAATTTTAATA
Found at i:75704111 original size:43 final size:43
Alignment explanation
Indices: 75704044--75704143 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 43
75704034 TTTAAATTTC
* * * * *
75704044 ATGACCTTTAGTGGCGTTTTTGGGAAAAG-TGCCGCTAAAGGTA
1 ATGATCTTTAGCGGCATTTGTGGGAAAAGCT-CCACTAAAGGTA
*
75704087 ATGATCTTTAGCGGCATTTGTGGGAAAAGCTCCACTAAAGGTC
1 ATGATCTTTAGCGGCATTTGTGGGAAAAGCTCCACTAAAGGTA
75704130 ATGATCTTTAGCGG
1 ATGATCTTTAGCGG
75704144 TGTTTTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
ATGATCTTTAGCGGCATTTGTGGGAAAAGCTCCACTAAAGGTA
Found at i:75707550 original size:12 final size:12
Alignment explanation
Indices: 75707535--75707559 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75707525 ATCATCCTCT
75707535 TCATCAGATTCA
1 TCATCAGATTCA
75707547 TCATCAGATTCA
1 TCATCAGATTCA
75707559 T
1 T
75707560 TCCTCGATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:75707733 original size:63 final size:63
Alignment explanation
Indices: 75707634--75707760 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
75707624 ATCTTTTAAC
*
75707634 ATAAACAAGATTTTATATCCAATGGTCTGCTCAGGAGCTCCTCTGTACTCTTCAGTAACGTCA
1 ATAAACAAGATTTTAGATCCAATGGTCTGCTCAGGAGCTCCTCTGTACTCTTCAGTAACGTCA
*
75707697 ATAAACAAGATTTTAGATCCAATGGTCTGCTCAGGAGCTCCTTTGTACTCTTCAGTAACGTCA
1 ATAAACAAGATTTTAGATCCAATGGTCTGCTCAGGAGCTCCTCTGTACTCTTCAGTAACGTCA
75707760 A
1 A
75707761 ATAGAGTCTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (63 bp):
ATAAACAAGATTTTAGATCCAATGGTCTGCTCAGGAGCTCCTCTGTACTCTTCAGTAACGTCA
Found at i:75709417 original size:9 final size:9
Alignment explanation
Indices: 75709403--75709615 Score: 88
Period size: 9 Copynumber: 24.0 Consensus size: 9
75709393 TATGTATTAC
*
75709403 GTAAGTTAA
1 GTAAGTTAT
*
75709412 GTAAGTTTT
1 GTAAGTTAT
*
75709421 GTAAGTTTT
1 GTAAGTTAT
75709430 GTAAGTTAT
1 GTAAGTTAT
75709439 GTAAGTTAT
1 GTAAGTTAT
75709448 GTAAGTTAT
1 GTAAGTTAT
*
75709457 G-ATA-TGAT
1 GTA-AGTTAT
* *
75709465 ATACATTTAT
1 GTA-AGTTAT
*
75709475 GTAAGATAT
1 GTAAGTTAT
75709484 GTAAGTTAT
1 GTAAGTTAT
*
75709493 GATACG--AT
1 G-TAAGTTAT
* *
75709501 ATACATTTAT
1 GTA-AGTTAT
75709511 GTAAAG-TAT
1 GT-AAGTTAT
75709520 GTAAGTTAT
1 GTAAGTTAT
*
75709529 G-ATA-TGAT
1 GTA-AGTTAT
* *
75709537 ATACATTTAT
1 GTA-AGTTAT
*
75709547 GTAAGGTAT
1 GTAAGTTAT
*
75709556 GTAAGTCAT
1 GTAAGTTAT
* *
75709565 GATATGATAT
1 G-TAAGTTAT
* *
75709575 AT-ATTTAT
1 GTAAGTTAT
75709583 GT-A-TTAT
1 GTAAGTTAT
* *
75709590 GTAATTTTT
1 GTAAGTTAT
75709599 GTAAGTTAT
1 GTAAGTTAT
75709608 G-AAGTTAT
1 GTAAGTTAT
75709616 TATATGATAT
Statistics
Matches: 152, Mismatches: 37, Indels: 31
0.69 0.17 0.14
Matches are distributed among these distances:
7 8 0.05
8 26 0.17
9 95 0.62
10 22 0.14
11 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:75709475 original size:36 final size:36
Alignment explanation
Indices: 75709435--75709593 Score: 243
Period size: 36 Copynumber: 4.5 Consensus size: 36
75709425 GTTTTGTAAG
75709435 TTATGTAAGTTATGTAAGTTATGATATGATATACAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATACAT
* *
75709471 TTATGTAAGATATGTAAGTTATGATACGATATACAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATACAT
75709507 TTATGTAAAG-TATGTAAGTTATGATATGATATACAT
1 TTATGT-AAGTTATGTAAGTTATGATATGATATACAT
* * *
75709543 TTATGTAAGGTATGTAAGTCATGATATGATATATAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATACAT
75709579 TTATGT-A-TTATGTAA
1 TTATGTAAGTTATGTAA
75709594 TTTTTGTAAG
Statistics
Matches: 115, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
34 7 0.06
35 4 0.03
36 101 0.88
37 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (36 bp):
TTATGTAAGTTATGTAAGTTATGATATGATATACAT
Found at i:75709622 original size:51 final size:52
Alignment explanation
Indices: 75709541--75709644 Score: 165
Period size: 51 Copynumber: 2.0 Consensus size: 52
75709531 TATGATATAC
75709541 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
1 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
* * * *
75709593 ATTTTTGTAAGTTATG-AAGTTATTATATGATATATATTTATGTATTATGTA
1 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
75709644 A
1 A
75709645 GGTATATAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
51 34 0.71
52 14 0.29
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (52 bp):
ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
Found at i:75709655 original size:51 final size:52
Alignment explanation
Indices: 75709548--75709657 Score: 150
Period size: 51 Copynumber: 2.1 Consensus size: 52
75709538 TACATTTATG
* ** * *
75709548 TAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTAATTTTTG
1 TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
* *
75709600 TAAGTTATG-AAGTTATTATATGATATATATTTATGTATTATGTAAGGTATA
1 TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
75709651 TAAGTTA
1 TAAGTTA
75709658 ATCATTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 43 0.84
52 8 0.16
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.47
Consensus pattern (52 bp):
TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
Found at i:75710505 original size:24 final size:24
Alignment explanation
Indices: 75710462--75710507 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
75710452 TTAACTTAAA
* *
75710462 TGATAAAACAGATGATAATATTAG
1 TGATAAAACAGACGAGAATATTAG
*
75710486 TGATAAAACGGACGAGAATATT
1 TGATAAAACAGACGAGAATATT
75710508 TCAATAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26
Consensus pattern (24 bp):
TGATAAAACAGACGAGAATATTAG
Found at i:75712710 original size:16 final size:17
Alignment explanation
Indices: 75712689--75712723 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
75712679 ACTATTTAAT
75712689 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
75712705 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
75712722 AT
1 AT
75712724 CAGCTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:75712859 original size:26 final size:26
Alignment explanation
Indices: 75712830--75712904 Score: 116
Period size: 25 Copynumber: 2.9 Consensus size: 26
75712820 AATAATTAGA
* *
75712830 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAATTCTTTAAAATTTTT
75712856 TAAAATTTGAATTCTTTAAAA-TTTT
1 TAAAATTTGAATTCTTTAAAATTTTT
*
75712881 TAAAATATGAATTCTTTAAAATTT
1 TAAAATTTGAATTCTTTAAAATTT
75712905 GAAATTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 24 0.53
26 21 0.47
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (26 bp):
TAAAATTTGAATTCTTTAAAATTTTT
Found at i:75712868 original size:16 final size:16
Alignment explanation
Indices: 75712849--75712879 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75712839 AAATCTTGAA
*
75712849 AATTTTTTAAAATTTG
1 AATTCTTTAAAATTTG
75712865 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
75712880 TTAAAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (16 bp):
AATTCTTTAAAATTTG
Done.