Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 247 of 425
Found at i:75712915 original size:17 final size:16
Alignment explanation
Indices: 75712874--75712921 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
75712864 GAATTCTTTA
75712874 AAATTTTTAAAATATG
1 AAATTTTTAAAATATG
*
75712890 -AATTCTTTAAAATTTG
1 AAATT-TTTAAAATATG
*
75712906 AAATTATTTAATATAT
1 AAATT-TTTAAAATAT
75712922 AGATTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 4 0.15
16 10 0.38
17 12 0.46
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (16 bp):
AAATTTTTAAAATATG
Found at i:75713135 original size:30 final size:29
Alignment explanation
Indices: 75713094--75713196 Score: 120
Period size: 30 Copynumber: 3.6 Consensus size: 29
75713084 ATTTTCTAAA
75713094 CCTTAAACCCTAACCCTTAACCCTATAAC
1 CCTTAAACCCTAACCCTTAACCCTATAAC
** *
75713123 CCTTAAATCCCTAACCCTTGTCCCTTTAAC
1 CCTTAAA-CCCTAACCCTTAACCCTATAAC
* *
75713153 CCTAAAACCCATATCCCTTAACCC-ATAAC
1 CCTTAAACCC-TAACCCTTAACCCTATAAC
*
75713182 CCTT-AACCCTGACCC
1 CCTTAAACCCTAACCC
75713197 CTAAATCTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 4 0.07
28 5 0.08
29 17 0.28
30 35 0.57
ACGTcount: A:0.30, C:0.43, G:0.02, T:0.25
Consensus pattern (29 bp):
CCTTAAACCCTAACCCTTAACCCTATAAC
Found at i:75713191 original size:7 final size:7
Alignment explanation
Indices: 75713094--75713191 Score: 74
Period size: 7 Copynumber: 13.4 Consensus size: 7
75713084 ATTTTCTAAA
75713094 CCTTAAAC
1 CCTT-AAC
75713102 CC-TAAC
1 CCTTAAC
75713108 CCTTAAC
1 CCTTAAC
75713115 CCTATAAC
1 CCT-TAAC
75713123 CCTTAAATC
1 CCTT-AA-C
75713132 CC-TAAC
1 CCTTAAC
**
75713138 CCTTGTC
1 CCTTAAC
75713145 CCTTTAAC
1 CC-TTAAC
*
75713153 CCTAAAAC
1 CCT-TAAC
* *
75713161 CCATATC
1 CCTTAAC
75713168 CCTTAAC
1 CCTTAAC
*
75713175 CCATAAC
1 CCTTAAC
75713182 CCTTAAC
1 CCTTAAC
75713189 CCT
1 CCT
75713192 GACCCCTAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 15
0.72 0.12 0.15
Matches are distributed among these distances:
6 8 0.11
7 38 0.54
8 22 0.31
9 3 0.04
ACGTcount: A:0.31, C:0.42, G:0.01, T:0.27
Consensus pattern (7 bp):
CCTTAAC
Found at i:75713198 original size:14 final size:14
Alignment explanation
Indices: 75713094--75713190 Score: 81
Period size: 15 Copynumber: 6.6 Consensus size: 14
75713084 ATTTTCTAAA
75713094 CCTTAAACCC-TAAC
1 CCTT-AACCCATAAC
75713108 CCTTAACCCTATAAC
1 CCTTAACCC-ATAAC
75713123 CCTTAAATCCC-TAAC
1 CCTT-AA-CCCATAAC
** *
75713138 CCTTGTCCCTTTAAC
1 CCTTAACCC-ATAAC
* *
75713153 CCTAAAACCCATATC
1 CCT-TAACCCATAAC
75713168 CCTTAACCCATAAC
1 CCTTAACCCATAAC
75713182 CCTTAACCC
1 CCTTAACCC
75713191 TGACCCCTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.12
14 22 0.33
15 29 0.43
16 5 0.07
17 3 0.04
ACGTcount: A:0.31, C:0.42, G:0.01, T:0.26
Consensus pattern (14 bp):
CCTTAACCCATAAC
Found at i:75713199 original size:81 final size:81
Alignment explanation
Indices: 75713032--75713199 Score: 182
Period size: 81 Copynumber: 2.1 Consensus size: 81
75713022 TAAAATCCTA
* **
75713032 ACCCCT-TAACCCCTAAACCTTTAACCCATGTCCCCTTAACCCTAAAACACATATTTTCTAAACC
1 ACCCCTATAACCCCTAAACCTCTAACCCATGTCCCCTTAACCCTAAAACACATATCCTCTAAACC
* *
75713096 TTAAACCCTAACCCTT
66 ATAAACCCTAACCCTG
* * * * * *
75713112 AACCCTATAACCCTTAAATCC-CTAACCCTTGTCCCTTTAACCCTAAAACCCATATCC-CTTAAC
1 ACCCCTATAACCCCTAAA-CCTCTAACCCATGTCCCCTTAACCCTAAAACACATATCCTC-TAAA
75713175 CCAT-AACCCTTAACCCTG
64 CCATAAACCC-TAACCCTG
75713193 ACCCCTA
1 ACCCCTA
75713200 AATCTTAGAC
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
80 11 0.15
81 59 0.82
82 2 0.03
ACGTcount: A:0.32, C:0.40, G:0.02, T:0.26
Consensus pattern (81 bp):
ACCCCTATAACCCCTAAACCTCTAACCCATGTCCCCTTAACCCTAAAACACATATCCTCTAAACC
ATAAACCCTAACCCTG
Found at i:75713232 original size:21 final size:21
Alignment explanation
Indices: 75713193--75713232 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75713183 CTTAACCCTG
* *
75713193 ACCCCTAAATCTTAGACCCCA
1 ACCCCTAAATCATAAACCCCA
*
75713214 ACCCTTAAATCATAAACCC
1 ACCCCTAAATCATAAACCC
75713233 TAAATCATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.40, G:0.03, T:0.20
Consensus pattern (21 bp):
ACCCCTAAATCATAAACCCCA
Found at i:75713256 original size:14 final size:14
Alignment explanation
Indices: 75713213--75713250 Score: 67
Period size: 14 Copynumber: 2.6 Consensus size: 14
75713203 CTTAGACCCC
75713213 AACCCTTAAATCATA
1 AACCC-TAAATCATA
75713228 AACCCTAAATCATA
1 AACCCTAAATCATA
75713242 AACCCTAAA
1 AACCCTAAA
75713251 CTATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTAAATCATA
Found at i:75713442 original size:15 final size:15
Alignment explanation
Indices: 75713422--75713584 Score: 61
Period size: 15 Copynumber: 11.1 Consensus size: 15
75713412 CACACTAATT
75713422 CCCCTAAACCCTAAA
1 CCCCTAAACCCTAAA
***
75713437 CCCCT-AACCCTTGT
1 CCCCTAAACCCTAAA
*
75713451 CCCCCAAACTCCTAAA
1 CCCCTAAAC-CCTAAA
* *
75713467 CCCCTAACCCCT-AT
1 CCCCTAAACCCTAAA
*** *
75713481 CATATTAACCCCTAAA
1 C-CCCTAAACCCTAAA
*
75713497 CCCCT-AACCCTTAA
1 CCCCTAAACCCTAAA
*
75713511 -CCCTTAACCCTTAAA
1 CCCCTAAACCC-TAAA
* *
75713526 -CCTTAAACCC-CAA
1 CCCCTAAACCCTAAA
* *
75713539 CCCTTAAACCATAAA
1 CCCCTAAACCCTAAA
* *
75713554 -CCATAATCCCTAAA
1 CCCCTAAACCCTAAA
* * *
75713568 CCCATAATCCATAAA
1 CCCCTAAACCCTAAA
75713583 CC
1 CC
75713585 TTAAAATAGT
Statistics
Matches: 110, Mismatches: 29, Indels: 18
0.70 0.18 0.11
Matches are distributed among these distances:
13 6 0.05
14 44 0.40
15 48 0.44
16 12 0.11
ACGTcount: A:0.36, C:0.44, G:0.01, T:0.20
Consensus pattern (15 bp):
CCCCTAAACCCTAAA
Found at i:75713521 original size:7 final size:7
Alignment explanation
Indices: 75713485--75713545 Score: 61
Period size: 7 Copynumber: 8.6 Consensus size: 7
75713475 CCCTATCATA
75713485 TTAACCCC
1 TTAA-CCC
*
75713493 TAAACCC
1 TTAACCC
*
75713500 CTAACCC
1 TTAACCC
75713507 TTAACCC
1 TTAACCC
75713514 TTAACCC
1 TTAACCC
*
75713521 TTAAACC
1 TTAACCC
75713528 TTAAACCC
1 TT-AACCC
*
75713536 -CAACCC
1 TTAACCC
75713542 TTAA
1 TTAA
75713546 ACCATAAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
6 5 0.12
7 31 0.72
8 7 0.16
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (7 bp):
TTAACCC
Found at i:75713529 original size:14 final size:13
Alignment explanation
Indices: 75713485--75713588 Score: 55
Period size: 14 Copynumber: 7.3 Consensus size: 13
75713475 CCCTATCATA
75713485 TTAACCCCTAAACCC
1 TTAA-CCCTAAA-CC
* *
75713500 CTAACCCTTAACCC
1 TTAACCC-TAAACC
75713514 TTAACCCTTAAACC
1 TTAACCC-TAAACC
* *
75713528 TTAAACCCCAACCC
1 TT-AACCCTAAACC
*
75713542 TTAAACCATAAACC
1 TT-AACCCTAAACC
*
75713556 ATAATCCCTAAACCC
1 TTAA-CCCTAAA-CC
* *
75713571 ATAATCCATAAACC
1 TTAA-CCCTAAACC
75713585 TTAA
1 TTAA
75713589 AATAGTAACT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
13 2 0.03
14 46 0.64
15 24 0.33
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.22
Consensus pattern (13 bp):
TTAACCCTAAACC
Found at i:75713553 original size:21 final size:21
Alignment explanation
Indices: 75713516--75713555 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75713506 CTTAACCCTT
*
75713516 AACCCTTAAACCTTAAACCCC
1 AACCCTTAAACCATAAACCCC
75713537 AACCCTTAAACCATAAACC
1 AACCCTTAAACCATAAACC
75713556 ATAATCCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCCTTAAACCATAAACCCC
Found at i:75713589 original size:22 final size:21
Alignment explanation
Indices: 75713519--75713589 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
75713509 AACCCTTAAC
* ** *
75713519 CCTTAAACCTTAAACCCCAAC
1 CCTTAAACCATAAACCATAAA
*
75713540 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
75713561 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
75713583 CCTTAAA
1 CCTTAAA
75713590 ATAGTAACTC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 23 0.56
22 18 0.44
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:75714208 original size:111 final size:113
Alignment explanation
Indices: 75713963--75714233 Score: 343
Period size: 111 Copynumber: 2.4 Consensus size: 113
75713953 ACAATGCGCT
* * * * *
75713963 GCTAAAGCTCGATCTTTAGCTGCGTTTTTCAAAAAGCACCGCTAATGCTACTAAAGCTCAACATA
1 GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACAT-
* *
75714028 AAACAACGACATCTTACTGAATTTCTTTGCGGCGTTTTTAAAAAGCGCC
65 AAACAACGACATCTTACTGAATTTCTTTGCGGAGTTTTTAAAAAGAGCC
* *
75714077 GCTAATGCTAGATCTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCT-AACAT-
1 GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATA
*** * *
75714140 AA-AACGGTGTCTTGCTGAATTTTTTTGCGGAGTTTTTTAAAAAGAGCC
66 AACAACGACATCTTACTGAATTTCTTTGCGGAG-TTTTTAAAAAGAGCC
* *
75714188 GCTAATGCTCTATCTATAGCGGCGTTTTT-AGAAAAGCGCTGCTAAT
1 GCTAATGCTCGATCTATAGCGGCGTTTTTCA-AAAAGCGCCGCTAAT
75714234 ACTCGATCTA
Statistics
Matches: 137, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
110 25 0.18
111 56 0.41
113 5 0.04
114 51 0.37
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (113 bp):
GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATA
AACAACGACATCTTACTGAATTTCTTTGCGGAGTTTTTAAAAAGAGCC
Found at i:75714215 original size:40 final size:41
Alignment explanation
Indices: 75714166--75714337 Score: 154
Period size: 40 Copynumber: 4.3 Consensus size: 41
75714156 GAATTTTTTT
*
75714166 GCGGAGTTTTTTA-AAAAGAGCCGCTAATGCTCTATCTATA
1 GCGGAGTTTTTTAGAAAAGAGCCGCTAATGCTCGATCTATA
* * * *
75714206 GCGGCG-TTTTTAGAAAAGCGCTGCTAATACTCGATCTATA
1 GCGGAGTTTTTTAGAAAAGAGCCGCTAATGCTCGATCTATA
* * * * * *
75714246 GCGGTGTTTTTCAGTAAA-CGCCTCTAATTCTCGATCTATA
1 GCGGAGTTTTTTAGAAAAGAGCCGCTAATGCTCGATCTATA
* * * * *
75714286 GCGAAG-TTTTTAAAAAAAAGCTGCTAATGCTCAATCTATA
1 GCGGAGTTTTTTAGAAAAGAGCCGCTAATGCTCGATCTATA
**
75714326 GCGCTGTTTTTT
1 GCGGAGTTTTTT
75714338 GTCCAAACGC
Statistics
Matches: 105, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 14 0.13
40 77 0.73
41 14 0.13
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (41 bp):
GCGGAGTTTTTTAGAAAAGAGCCGCTAATGCTCGATCTATA
Found at i:75714309 original size:80 final size:80
Alignment explanation
Indices: 75714189--75714336 Score: 206
Period size: 80 Copynumber: 1.9 Consensus size: 80
75714179 AAAAGAGCCG
* ** * ** * *
75714189 CTAATGCTCTATCTATAGCGGCGTTTTTAGAAAAGCGCTGCTAATACTCGATCTATAGCGGTGTT
1 CTAATGCTCGATCTATAGCGAAGTTTTTAAAAAAAAGCTGCTAATACTCAATCTATAGCGCTGTT
75714254 TTTCAGTAAACGCCT
66 TTTCAGTAAACGCCT
* *
75714269 CTAATTCTCGATCTATAGCGAAGTTTTTAAAAAAAAGCTGCTAATGCTCAATCTATAGCGCTGTT
1 CTAATGCTCGATCTATAGCGAAGTTTTTAAAAAAAAGCTGCTAATACTCAATCTATAGCGCTGTT
75714334 TTT
66 TTT
75714337 TGTCCAAACG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (80 bp):
CTAATGCTCGATCTATAGCGAAGTTTTTAAAAAAAAGCTGCTAATACTCAATCTATAGCGCTGTT
TTTCAGTAAACGCCT
Found at i:75716609 original size:27 final size:27
Alignment explanation
Indices: 75716574--75716626 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
75716564 CATCAAGAAT
* *
75716574 TAAGGAATAGGGATCTCTCTTTTTGAA
1 TAAGAAATAGGGAGCTCTCTTTTTGAA
75716601 TAAGAAATAGGGAGCTCTCTTTTTGA
1 TAAGAAATAGGGAGCTCTCTTTTTGA
75716627 TCTCTCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (27 bp):
TAAGAAATAGGGAGCTCTCTTTTTGAA
Found at i:75717361 original size:18 final size:19
Alignment explanation
Indices: 75717334--75717369 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
75717324 TTGATAGTTG
75717334 AAAATATTT-AAAATAATC
1 AAAATATTTAAAAATAATC
*
75717352 AAAATTTTTAAAAATAAT
1 AAAATATTTAAAAATAAT
75717370 AAATTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATATTTAAAAATAATC
Found at i:75720578 original size:20 final size:20
Alignment explanation
Indices: 75720553--75720592 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75720543 ACCTAACCTT
*
75720553 ATACATACAACAATCGATTC
1 ATACATACAACAATCAATTC
*
75720573 ATACATGCAACAATCAATTC
1 ATACATACAACAATCAATTC
75720593 TTACCTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.25
Consensus pattern (20 bp):
ATACATACAACAATCAATTC
Found at i:75722633 original size:21 final size:21
Alignment explanation
Indices: 75722609--75722652 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
75722599 ATTTTGCCTA
* *
75722609 GAGTGTGAATTGAATTAAATT
1 GAGTATGAAATGAATTAAATT
*
75722630 GAGTATGAAATGGATTAAATT
1 GAGTATGAAATGAATTAAATT
75722651 GA
1 GA
75722653 TGTTAAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (21 bp):
GAGTATGAAATGAATTAAATT
Found at i:75724599 original size:50 final size:48
Alignment explanation
Indices: 75724442--75724706 Score: 160
Period size: 48 Copynumber: 5.6 Consensus size: 48
75724432 GGCCTCGAGA
* *
75724442 TGTAAG-CCATGTTTAGGACAT-GCATCAGCTACGA--GATG--TGTCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCT-CGATTG-TGAAAGTCAG
* * * * * * *
75724486 TGTAAGATCATGTCTGGGACATGGCATCGGCACGTATAGATG--TGTCAA
1 TGTAAGACCATGTTTGGGACATGGCATCAGCTCG-ATTG-TGAAAGTCAG
*
75724534 TATAAGACCATGTTTGGGACATGGCATCAG-TACAGATATGTGAAAG-CTAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCT-C-GAT-TGTGAAAGTC-AG
* * * *
75724584 TGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTTGATAGTCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-CTCGATTGTGAAAGTCAG
* * * *
75724633 TGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-TG-GATGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-CTCGATTGTGA-AAGTCAG
**
75724680 TGTAAGACCATGCCTGGGACATGGCAT
1 TGTAAGACCATGTTTGGGACATGGCAT
75724707 TGGCATCATA
Statistics
Matches: 179, Mismatches: 27, Indels: 27
0.77 0.12 0.12
Matches are distributed among these distances:
44 6 0.03
45 14 0.08
46 10 0.06
47 32 0.18
48 45 0.25
49 37 0.21
50 33 0.18
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGCTCGATTGTGAAAGTCAG
Found at i:75724654 original size:49 final size:49
Alignment explanation
Indices: 75724476--75724706 Score: 197
Period size: 48 Copynumber: 4.8 Consensus size: 49
75724466 TCAGCTACGA
* * * * *
75724476 GATGTGTCAGTGTAAGATCATGTCTGGGACATGGCATCGGCACG-TATA
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATTTT
* * * * * *
75724524 GATGTGTCAATATAAGACCATGTTTGGGACATGGCATCAG-TACAGATATGT
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-C-GAT-TTT
* * *
75724575 GA-AAG-CTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTT
1 GATGAGTC-AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGATTTT
* * *
75724624 GAT-AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA--TG
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATTTT
* *
75724670 GATGAGCCAGTGTAAGACCATGCCTGGGACATGGCAT
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCAT
75724707 TGGCATCATA
Statistics
Matches: 150, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
46 4 0.03
47 31 0.21
48 40 0.27
49 37 0.25
50 34 0.23
51 3 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (49 bp):
GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATTTT
Found at i:75732435 original size:27 final size:28
Alignment explanation
Indices: 75732373--75732442 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
75732363 AAACTTGTAC
75732373 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
75732401 AGCACTAAGTGTGCGAG-TTGGTTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75732428 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75732443 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75732453 original size:27 final size:27
Alignment explanation
Indices: 75732373--75732454 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
75732363 AAACTTGTAC
* *
75732373 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* ***
75732401 AGCACTAAGTGTGCGAGTTGGTTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75732428 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75732455 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 28 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75734061 original size:25 final size:24
Alignment explanation
Indices: 75734033--75734085 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
75734023 CATTACAGTA
*
75734033 GCTCTTATTGAGCATCCTGATATAG
1 GCTCTTATTAAGCATCCTGATAT-G
* * *
75734058 GCTCTTCTTAAGCTTCTTGATATG
1 GCTCTTATTAAGCATCCTGATATG
75734082 GCTC
1 GCTC
75734086 GCTTGAACAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (24 bp):
GCTCTTATTAAGCATCCTGATATG
Found at i:75737361 original size:69 final size:70
Alignment explanation
Indices: 75737089--75737819 Score: 409
Period size: 70 Copynumber: 10.4 Consensus size: 70
75737079 AAGCTCATGC
* * * * * * *
75737089 TAACTATTTTGGAGGCTGC-AGTATTGAACCTATGAACCTTAAGGTTACATCTTGAAGCTTGAGC
1 TAACTGTTTTGGAGGTTGCGA-TATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGC
* *
75737153 TCGCAT
65 TTGCGT
** * * * * * * * *
75737159 TAACAATTTTGGAGGCTAC-AGTATTAAACCTCCAAGCCTTAAGATTACAGTTGGGAGCTTGAGC
1 TAACTGTTTTGGAGGTTGCGA-TATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGC
**
75737223 TCACGT
65 TTGCGT
* ** * * * *
75737229 TAACTATTTTGGAGGTTGC-AGTATTGAACCTGTGAGTCTTAGGGTTACAACTAGGAGTTTGAGC
1 TAACTGTTTTGGAGGTTGCGA-TATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGC
75737293 TTGCGT
65 TTGCGT
* * * * *
75737299 TAAATGTTTTGGA-GTTGCGATATTGAACCTACGAGCCTTAAGGCTATAGTTGGGAGCTTGAGCT
1 TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
*
75737363 TGCGC
66 TGCGT
* * *
75737368 TAACTGTTTTGGAGGCTGCGATATTGAACCTACGAGCCTTAAAGTTATAGCTAGGAGCTTGAGCT
1 TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
* *
75737433 TGGGC
66 TGCGT
* * * * * * ** * *
75737438 CAACTGATTTTGGGGGCTACGATTTTGAACTTGTGAGCCTTAAGGTAATAGCT-GGCAGCTTGAG
1 TAACTG-TTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGG-AGCTTGAG
*
75737502 CTCT-CGG
64 CT-TGCGT
* * ** * * * ** *
75737509 TAACTATTTTGGAGGCTGTAATATTGAACTTGCAAGCCTTTGGGTTACAGCTAGGAGCTTGATCT
1 TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
* *
75737574 CGCGC
66 TGCGT
* ** * * * * * * * * * *
75737579 TAACTATTTTGGAGACTGTGGTATTGAAACTGCAAGCTTTAAGATTACAGTTGGGAGTTTGAGCT
1 TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
** **
75737644 CACAC
66 TGCGT
* * * ** * * * * *
75737649 TAACTATGTTGGAGGTTGTGATATTGAATATGCGAGCCTTAAGGTTACAACTGGGAGTTTAAGCT
1 TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
* *
75737714 TACGC
66 TGCGT
* * ** * *
75737719 TAACTATTTTGGAGGCTAT-AG-TATTGAACCTATAAGCCTTAGGGTTACAGCTGGGAGCTTGAG
1 TAACTGTTTTGGAGG-T-TGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAG
* **
75737782 CTCGCAC
64 CTTGCGT
*
75737789 TAACTGTTTTGGAGGTTAC-AGTATTGAACCT
1 TAACTGTTTTGGAGGTTGCGA-TATTGAACCT
75737820 TTGAGCCATG
Statistics
Matches: 527, Mismatches: 122, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
68 1 0.00
69 56 0.11
70 411 0.78
71 57 0.11
72 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (70 bp):
TAACTGTTTTGGAGGTTGCGATATTGAACCTACGAGCCTTAAGGTTACAGCTAGGAGCTTGAGCT
TGCGT
Found at i:75737826 original size:140 final size:140
Alignment explanation
Indices: 75737080--75737826 Score: 614
Period size: 140 Copynumber: 5.3 Consensus size: 140
75737070 TGGGAACGTA
* * * * * *
75737080 AGCTCATGCTAACTATTTTGGAGGCTGCAGTATTGAACCTATGAACCTTAAGGTTACATCTTGAA
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
* ** * * * * *
75737145 GCTTGAGCTCGCATTAACAATTTTGGAGGCTACAGTATTAAACCTCCAAGCCTTAAGATTACAGT
66 GCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACAGT
75737210 TGGGAGCTTG
131 TGGGAGCTTG
* * * *
75737220 AGCTCACGTTAACTATTTTGGAGGTTGCAGTATTGAACCTGTGAGTCTTAGGGTTACAACTAGGA
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
* * * * * * * *
75737285 GTTTGAGCTTGCGTTAAATGTTTTGGA-G-T-TGCGATATTGAACCTACGAGCCTTAAGGCTATA
66 GCTTGAGCTTGCGCTAACTATTTTGGAGGCTAT-AG-TATTGAACCTACAAGCCTTAAGGTTACA
75737347 GTTGGGAGCTTG
129 GTTGGGAGCTTG
** * * * * * *
75737359 AGCTTGCGCTAACTGTTTTGGAGGCTGC-GATATTGAACCTACGAGCCTTAAAGTTATAGCTAGG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAG-TATTGAACCTATGAGCCTTAAGGTTACAACTAGG
* * * * * * *** * *
75737423 AGCTTGAGCTTGGGCCAACTGATTTTGGGGGCTA-CGATTTTGAACTTGTGAGCCTTAAGGTAAT
65 AGCTTGAGCTTGCGCTAACT-ATTTTGGAGGCTATAG-TATTGAACCTACAAGCCTTAAGGTTAC
* *
75737487 AGCTGGCAGCTTG
128 AGTTGGGAGCTTG
* * * * * ** *
75737500 AGCTCTCGGTAACTATTTTGGAGGCTGTAATATTGAA-CT-TGCAAGCCTTTGGGTTACAGCTAG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATG--AGCCTTAAGGTTACAACTAG
* * * * * * * * *
75737563 GAGCTTGATCTCGCGCTAACTATTTTGGAGACTGTGGTATTGAAACTGCAAGCTTTAAGATTACA
64 GAGCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACA
*
75737628 GTTGGGAGTTTG
129 GTTGGGAGCTTG
* * * *
75737640 AGCTCACACTAACTATGTTGGAGGTTG-TGATATTGAA--TATGCGAGCCTTAAGGTTACAACTG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAG-TATTGAACCTAT--GAGCCTTAAGGTTACAACTA
* * * * *
75737702 GGAGTTTAAGCTTACGCTAACTATTTTGGAGGCTATAGTATTGAACCTATAAGCCTTAGGGTTAC
63 GGAGCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTAC
*
75737767 AGCTGGGAGCTTG
128 AGTTGGGAGCTTG
* * * * *
75737780 AGCTCGCACTAACTGTTTTGGAGGTTACAGTATTGAACCTTTGAGCC
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCC
75737827 ATGGTAATAT
Statistics
Matches: 474, Mismatches: 115, Indels: 36
0.76 0.18 0.06
Matches are distributed among these distances:
138 3 0.01
139 102 0.22
140 264 0.56
141 101 0.21
142 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (140 bp):
AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
GCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACAGT
TGGGAGCTTG
Found at i:75740622 original size:9 final size:9
Alignment explanation
Indices: 75740608--75740644 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
75740598 TATTTTGGGC
75740608 TAAATTGAA
1 TAAATTGAA
75740617 TAAATTGAA
1 TAAATTGAA
75740626 TAAATTG-A
1 TAAATTGAA
75740634 T-AATTGAA
1 TAAATTGAA
75740642 TAA
1 TAA
75740645 TTTATATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 5 0.19
8 4 0.15
9 17 0.65
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (9 bp):
TAAATTGAA
Found at i:75740640 original size:16 final size:18
Alignment explanation
Indices: 75740608--75740644 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
75740598 TATTTTGGGC
75740608 TAAATTGAATAAATTGAA
1 TAAATTGAATAAATTGAA
75740626 TAAATTG-AT-AATTGAA
1 TAAATTGAATAAATTGAA
75740642 TAA
1 TAA
75740645 TTTATATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
17 2 0.11
18 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TAAATTGAATAAATTGAA
Found at i:75751774 original size:16 final size:16
Alignment explanation
Indices: 75751755--75751785 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
75751745 TCAACTATAC
75751755 AATTTATCAAAATTTA
1 AATTTATCAAAATTTA
75751771 AATTTATCAAAATTT
1 AATTTATCAAAATTT
75751786 CATGAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTTATCAAAATTTA
Found at i:75751795 original size:11 final size:11
Alignment explanation
Indices: 75751770--75751802 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
75751760 ATCAAAATTT
75751770 AAATTT-ATCA
1 AAATTTCATCA
*
75751780 AAATTTCATGA
1 AAATTTCATCA
75751791 AAATTTCATCA
1 AAATTTCATCA
75751802 A
1 A
75751803 CTTCTCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (11 bp):
AAATTTCATCA
Found at i:75755715 original size:5 final size:5
Alignment explanation
Indices: 75755705--75755737 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
75755695 GGAGATTGTG
75755705 AAAAT AAAAT AAAAT AAAAT AAAGA- AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAA
75755738 TTTTTACGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 24 0.92
6 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:75756121 original size:13 final size:13
Alignment explanation
Indices: 75756103--75756130 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75756093 ACATATTATA
75756103 AATATTTTGTGTT
1 AATATTTTGTGTT
75756116 AATATTTTGTGTT
1 AATATTTTGTGTT
75756129 AA
1 AA
75756131 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:75757602 original size:40 final size:40
Alignment explanation
Indices: 75757554--75757797 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
75757544 GGACTAAGAT
75757554 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
75757594 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
* * ** *
75757634 CCGAA-GCATTTGTGCTAGTTACTTTAACAAGAC-AAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
75757672 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
75757712 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
75757752 CTGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
75757791 CCGAAGG
1 CCGAAGG
75757798 TACTTGGGTT
Statistics
Matches: 183, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 10 0.05
39 62 0.34
40 110 0.60
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:75764308 original size:13 final size:13
Alignment explanation
Indices: 75764290--75764317 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75764280 ACATATTATA
75764290 AATATTTTGTGTT
1 AATATTTTGTGTT
75764303 AATATTTTGTGTT
1 AATATTTTGTGTT
75764316 AA
1 AA
75764318 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:75765788 original size:40 final size:40
Alignment explanation
Indices: 75765740--75765945 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
75765730 GGACTAAGAT
75765740 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
75765780 CCGAAGGCATTTGTGCTAGTTACTATAAT-CGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTAT-ATCCGGGCTAAG-TC
*
75765820 CCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
*
75765860 CTGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
75765900 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
75765939 CCGAAGG
1 CCGAAGG
75765946 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
39 17 0.11
40 133 0.87
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:75772400 original size:13 final size:13
Alignment explanation
Indices: 75772355--75772402 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
75772345 TATTGAAATA
*
75772355 AAATGGTGATATG
1 AAATGGTTATATG
*
75772368 AAATGATTATATG
1 AAATGGTTATATG
*
75772381 AAGTGGTTATATG
1 AAATGGTTATATG
*
75772394 AATTGGTTA
1 AAATGGTTA
75772403 CATAGAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:75774298 original size:24 final size:24
Alignment explanation
Indices: 75774244--75774373 Score: 70
Period size: 24 Copynumber: 5.4 Consensus size: 24
75774234 TGGCTATCCG
* * *
75774244 GAGCTTCCC-ATTATTGTTCTTTGT
1 GAGCTTCCCGATTATGGCTC-TTAT
*
75774268 GAACTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATTATGGCTCTTAT
* * * * **
75774292 GAGCTTCCTGTTATATAGCCCAGAT
1 GAGCTTCCCGAT-TATGGCTCTTAT
* *
75774317 AAGCTTCTCGA-TA-GGCTCTTTAT
1 GAGCTTCCCGATTATGGCTC-TTAT
* *
75774340 GAGCTTCCCGA-AATGGCTCTATGT
1 GAGCTTCCCGATTATGGCTCT-TAT
75774364 GAGCTTCCCG
1 GAGCTTCCCG
75774374 TTACAAGACT
Statistics
Matches: 78, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 37 0.47
25 23 0.29
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGATTATGGCTCTTAT
Found at i:75775946 original size:24 final size:24
Alignment explanation
Indices: 75775893--75775946 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
75775883 TAAATAGTGT
** *
75775893 TTTGGTATAAGTGTGTTATGATCA
1 TTTGGTATAAGTAAGTTATGATAA
* *
75775917 TCTGGTATATGTAAGTTATGATAA
1 TTTGGTATAAGTAAGTTATGATAA
75775941 TTTGGT
1 TTTGGT
75775947 TACGTTTGTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (24 bp):
TTTGGTATAAGTAAGTTATGATAA
Found at i:75784393 original size:40 final size:39
Alignment explanation
Indices: 75784348--75784477 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75784338 CGGAATATAA
75784348 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75784388 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75784428 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75784468 CCGGATATAA
1 CCGGATATAA
75784478 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75784492 original size:40 final size:40
Alignment explanation
Indices: 75784364--75784515 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
75784354 ATAACCATGT
* * *
75784364 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75784404 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75784444 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75784484 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75784516 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75784498 original size:80 final size:80
Alignment explanation
Indices: 75784364--75784513 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75784354 ATAACCATGT
*
75784364 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75784428 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75784444 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75784507 CCCGGAT
64 CCCGGAT
75784514 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75799779 original size:40 final size:39
Alignment explanation
Indices: 75799734--75799863 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75799724 CGGAATATAA
75799734 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75799774 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75799814 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75799854 CCGGATATAA
1 CCGGATATAA
75799864 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75799878 original size:40 final size:40
Alignment explanation
Indices: 75799750--75799901 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
75799740 ATAACCATGT
* * *
75799750 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75799790 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75799830 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75799870 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75799902 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75799884 original size:80 final size:80
Alignment explanation
Indices: 75799750--75799899 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75799740 ATAACCATGT
*
75799750 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75799814 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75799830 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75799893 CCCGGAT
64 CCCGGAT
75799900 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75801657 original size:55 final size:53
Alignment explanation
Indices: 75801596--75801740 Score: 139
Period size: 55 Copynumber: 2.7 Consensus size: 53
75801586 TAAGTTTTAC
*
75801596 AAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATAAACTACGAT
1 AAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGACAATGAT-AACTAC-AT
* * * * * * * * *
75801651 AAGGCAAAG-ATTCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCAT
1 AAGGCAAGGAAAT-CATGTAAGACCATGTCAAGACATGACAATGATAACTACAT
* * *
75801704 AAGGCAAGGATACCACGTAAGACCATGTCAAGACATG
1 AAGGCAAGGAAATCATGTAAGACCATGTCAAGACATG
75801741 GAAATGGTAA
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
53 31 0.44
54 5 0.07
55 35 0.49
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (53 bp):
AAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGACAATGATAACTACAT
Found at i:75801724 original size:53 final size:53
Alignment explanation
Indices: 75801649--75801753 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
75801639 ATAAACTACG
* * * * *
75801649 ATAAGGCAAAGATTCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTC
* *
75801702 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
75801754 TAAAAAGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTC
Found at i:75804283 original size:43 final size:43
Alignment explanation
Indices: 75804206--75804320 Score: 101
Period size: 43 Copynumber: 2.7 Consensus size: 43
75804196 TGCCAACGTT
* *
75804206 CCAGATGTGGTCTTACATGTAATCACATGCCGATG-TCACTGTC
1 CCAGATGTGGTCTTACACGTAATCACATGACGATGCTCA-TGTC
* *
75804249 CCAGATAG-GGTCTTACACG-AATCACAATTACGATGCTGATGTC
1 CCAGAT-GTGGTCTTACACGTAATCAC-ATGACGATGCTCATGTC
** * * *
75804292 CCAGACATGGTATTACTCGAAATCACATG
1 CCAGATGTGGTCTTACACGTAATCACATG
75804321 TTGATGCCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
42 6 0.10
43 43 0.74
44 9 0.16
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (43 bp):
CCAGATGTGGTCTTACACGTAATCACATGACGATGCTCATGTC
Found at i:75811201 original size:55 final size:55
Alignment explanation
Indices: 75811114--75811242 Score: 143
Period size: 55 Copynumber: 2.3 Consensus size: 55
75811104 GTATATATGT
* * * * * *
75811114 GCACGCCCGTGTTATTTTGACAGCTACGACCACGGGTGGTAGGCATGGGCGTGTC
1 GCACGCCCGTGTTAATTTGACAGCTACGACCACGGCTGATAGCCACGAGCGTGTC
* * * * *
75811169 GCACGCCCGTGTTAATTT-ATCAGTTTCTACCACGGCTTATAGCCACGAGCGTGTT
1 GCACGCCCGTGTTAATTTGA-CAGCTACGACCACGGCTGATAGCCACGAGCGTGTC
75811224 GCACGCCCGTGTTAATTTG
1 GCACGCCCGTGTTAATTTG
75811243 GCAGGATTAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 60 0.98
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (55 bp):
GCACGCCCGTGTTAATTTGACAGCTACGACCACGGCTGATAGCCACGAGCGTGTC
Found at i:75814723 original size:17 final size:18
Alignment explanation
Indices: 75814703--75814736 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75814693 ACACACAAAT
75814703 TAATTCA-ACACATTAAC
1 TAATTCAGACACATTAAC
*
75814720 TAATTTAGACACATTAA
1 TAATTCAGACACATTAA
75814737 TTTTTGGCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (18 bp):
TAATTCAGACACATTAAC
Found at i:75815021 original size:24 final size:23
Alignment explanation
Indices: 75814993--75815046 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
75814983 ATTAAGACCT
*
75814993 AATTAACTAATTTTACTAACAGCA
1 AATTAAATAATTTTA-TAACAGCA
* **
75815017 AATTAAATGATTTTATTCCAGCA
1 AATTAAATAATTTTATAACAGCA
75815040 AATTAAA
1 AATTAAA
75815047 CGAAAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (23 bp):
AATTAAATAATTTTATAACAGCA
Found at i:75820302 original size:19 final size:20
Alignment explanation
Indices: 75820278--75820326 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
75820268 AACACCTCTC
75820278 TTTTTTTTAAATTTTTT-TA
1 TTTTTTTTAAATTTTTTATA
*
75820297 -TTTTTTTGAATTTTTTATA
1 TTTTTTTTAAATTTTTTATA
*
75820316 TACTTTTTTAA
1 T-TTTTTTTAA
75820327 TAACTACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 15 0.62
19 2 0.08
21 7 0.29
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTTTTTAAATTTTTTATA
Found at i:75821685 original size:17 final size:18
Alignment explanation
Indices: 75821665--75821703 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
75821655 TACACACACA
75821665 AATTAATTCAG-CACATT
1 AATTAATTCAGACACATT
*
75821682 AATTAATTTAGACACATT
1 AATTAATTCAGACACATT
75821700 AATT
1 AATT
75821704 TTCGGCTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AATTAATTCAGACACATT
Found at i:75829538 original size:43 final size:42
Alignment explanation
Indices: 75829371--75829540 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
75829361 ATATCGTACA
* * * *
75829371 ATGCCAACGTCCCAGACCTGGTCTTACATGTAATCACATGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AAACACATATCG
* * *
75829414 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAACACATA-T-CG
* * *
75829457 ATGCCGATGTCCCAGACATGGTCTTAC-TCGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAT-GAAA-CACATATCG
75829500 ATGCCAACGTCCCAGACGTGGTCTTACATGAGAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA-AACACATAT
75829541 TGGAAATCCT
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 10 0.10
43 83 0.81
44 9 0.09
45 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAACACATATCG
Found at i:75835031 original size:24 final size:24
Alignment explanation
Indices: 75834981--75835034 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
75834971 AATCGAATTT
*
75834981 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
75835005 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
75835029 GCACAC
1 GCACAC
75835035 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:75837371 original size:93 final size:93
Alignment explanation
Indices: 75837259--75837430 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75837249 CGCCCATAAG
* *
75837259 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75837324 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75837352 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75837417 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75837431 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75837427 original size:46 final size:46
Alignment explanation
Indices: 75837252--75837427 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75837242 TGTAACCCGC
* * *
75837252 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75837298 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75837348 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75837391 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75837428 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75841896 original size:40 final size:40
Alignment explanation
Indices: 75841788--75842037 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
75841778 CGGGATTTAA
* * * * *
75841788 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75841828 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75841868 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75841908 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75841948 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75841988 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75842028 CCGGATATAT
1 CCGGATATAT
75842038 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75850803 original size:29 final size:29
Alignment explanation
Indices: 75850741--75850841 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 29
75850731 GTGACGAGAT
* * *
75850741 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
75850770 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
75850799 TGGCACTATGTGTGCGGGCTT-GAATCATT
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
75850828 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
75850842 GCGTGATTGA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 3 0.05
29 55 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.31
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:75857585 original size:40 final size:40
Alignment explanation
Indices: 75857547--75857725 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
75857537 CAAGCACAAT
* *** * *
75857547 TGCCTTCGGGTCTTAACCCAGATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCAGATTTAACAACTCGCACGAA
* *
75857587 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCAGATTTAACAACTCGCACGAA
*
75857627 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCAGATTTAACAACTCGCACGAA
** * **
75857667 TGCCTTCGGGTCTTAGCCCAGATAGAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCAGATTTAA-CAACTCGCACGAA
*
75857707 TGCCTTCGGGACTTAGCCC
1 TGCCTTCGGGTCTTAGCCC
75857726 GGGTATCATT
Statistics
Matches: 122, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
40 121 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCAGATTTAACAACTCGCACGAA
Found at i:75857651 original size:80 final size:78
Alignment explanation
Indices: 75857520--75857727 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 78
75857510 TCTTCGGAAT
* * * *** *
75857520 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCAC
75857584 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
*
75857599 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCAC
*
75857664 GAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * * *
75857679 TTAGCCCAGATAGAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
75857728 GTATCATTCA
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
79 5 0.05
80 102 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACAA
ATGCCTTCGGGTC
Found at i:75875976 original size:20 final size:20
Alignment explanation
Indices: 75875951--75876002 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
75875941 GAGGCAATGC
75875951 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
75875971 ACACGCCCATGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
75875991 ACACTCCCGTGT
1 ACACGCCCGTGT
75876003 CCCCTACTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.13, C:0.33, G:0.29, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:75879145 original size:40 final size:39
Alignment explanation
Indices: 75878980--75879163 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75878970 AAATTGAATG
* * *
75878980 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75879020 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75879060 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75879100 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75879139 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75879164 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75879188 original size:80 final size:81
Alignment explanation
Indices: 75879020--75879208 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75879010 GCTGGAAATT
* * * *
75879020 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75879085 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75879101 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75879164 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75879180 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75879209 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75887235 original size:40 final size:39
Alignment explanation
Indices: 75887070--75887243 Score: 136
Period size: 40 Copynumber: 4.4 Consensus size: 39
75887060 AAATTGAATG
* * *
75887070 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75887110 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75887150 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75887190 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
*
75887229 GATATCCGGGTTAAG
1 -ATATCCGGGCTAAG
75887244 TCCGTAGGCC
Statistics
Matches: 105, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 96 0.91
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75892586 original size:39 final size:40
Alignment explanation
Indices: 75892528--75892628 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
75892518 AAATTGAATG
* *
75892528 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
75892567 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
75892607 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
75892629 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:75892621 original size:40 final size:40
Alignment explanation
Indices: 75892528--75892678 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
75892518 AAATTGAATG
* * * * *
75892528 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
75892567 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
75892607 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
75892647 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75892679 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:75892693 original size:40 final size:38
Alignment explanation
Indices: 75892524--75892695 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
75892514 TGAGAAATTG
* *
75892524 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
75892563 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
75892600 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
75892640 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
75892680 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
75892696 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:75894293 original size:46 final size:46
Alignment explanation
Indices: 75894243--75894415 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
75894233 TGGTTGAGCA
*
75894243 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
75894289 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
75894336 TCCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
75894382 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75894416 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75894399 original size:93 final size:93
Alignment explanation
Indices: 75894240--75894410 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75894230 GGATGGTTGA
* * *
75894240 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
75894305 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75894333 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
75894398 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75894411 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75901564 original size:28 final size:28
Alignment explanation
Indices: 75901495--75901595 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75901485 GACAAGATTG
* * * *
75901495 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75901525 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75901553 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75901582 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75901596 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75901589 original size:29 final size:28
Alignment explanation
Indices: 75901524--75901595 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
75901514 AAAATTGTAC
*
75901524 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
75901552 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
75901581 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75901596 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:75909346 original size:28 final size:29
Alignment explanation
Indices: 75909306--75909376 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
75909296 GACAAGATTG
*
75909306 GCACTAAGTGTGCGAGTTTG-AT-TATATA
1 GCACTAAGTGTGCGAG-CTGAATGTATATA
75909334 GCACTAAGTGTGCGAGCTGAATGTATATA
1 GCACTAAGTGTGCGAGCTGAATGTATATA
75909363 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75909377 GATTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAATGTATATA
Found at i:75913450 original size:13 final size:13
Alignment explanation
Indices: 75913434--75913459 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75913424 TTAGTTATGC
75913434 CTTTTGGAATAAA
1 CTTTTGGAATAAA
75913447 CTTTTGGAATAAA
1 CTTTTGGAATAAA
75913460 GAATGCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
CTTTTGGAATAAA
Found at i:75917107 original size:42 final size:42
Alignment explanation
Indices: 75917003--75917128 Score: 112
Period size: 42 Copynumber: 2.9 Consensus size: 42
75916993 GTAAGGCCAC
** *
75917003 GTCTGGGACATTGGCATCGGCTTATGATTTACATGTAAGACAAT
1 GTCTGGGACA-TGGCATCGTATT-TGATTTACATATAAGACAAT
** * **
75917047 GTCTGGGACATCAACATCGTATTTGATTT-CGTATAAGACCTT
1 GTCTGGGACAT-GGCATCGTATTTGATTTACATATAAGACAAT
*
75917089 GTCTGGGACAGTGGCATCGATATTTGA-TTACATGTAAGAC
1 GTCTGGGACA-TGGCATCG-TATTTGATTTACATATAAGAC
75917129 CACGTTTGGG
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
42 26 0.39
43 23 0.35
44 17 0.26
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
GTCTGGGACATGGCATCGTATTTGATTTACATATAAGACAAT
Found at i:75917147 original size:43 final size:42
Alignment explanation
Indices: 75916992--75917153 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 42
75916982 TGTGTTTTTG
* **
75916992 TGTAAGGCCACGTCTGGGACATTGGCATCGGCTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATT-TGA-TTACA
* * *** * *
75917036 TGTAAGACAATGTCTGGGACATCAACATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
* ** *
75917078 TATAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTACA
* * *
75917121 TGTAAGACCACGTTTGGGACGTTGGCATTGTAT
1 TGTAAGACCACGTCTGGGACATTGGCATCGTAT
75917154 GAGCTTTCTG
Statistics
Matches: 91, Mismatches: 26, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
42 29 0.32
43 36 0.40
44 26 0.29
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
Found at i:75921462 original size:18 final size:17
Alignment explanation
Indices: 75921434--75921467 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
75921424 TTAATCGCTT
75921434 TAATATTAAATTTAATC
1 TAATATTAAATTTAATC
75921451 TAATATTTAAATTTAAT
1 TAATA-TTAAATTTAAT
75921468 ATTAAATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATATTAAATTTAATC
Found at i:75922689 original size:86 final size:86
Alignment explanation
Indices: 75922544--75922719 Score: 334
Period size: 86 Copynumber: 2.0 Consensus size: 86
75922534 TTATCTCATT
75922544 GTCACCATTGTGTTCTTAATGATTAAAATGAGATCTATCAACAAATGACTGCGATAAATTGCTCA
1 GTCACCATTGTGTTCTTAATGATTAAAATGAGATCTATCAACAAATGACTGCGATAAATTGCTCA
75922609 TTCAAGAATAAGCAACCCTTG
66 TTCAAGAATAAGCAACCCTTG
* *
75922630 GTCACCATTGTGTTCTTAATGATTAATATGAGATCTATCAACAAATGACTGTGATAAATTGCTCA
1 GTCACCATTGTGTTCTTAATGATTAAAATGAGATCTATCAACAAATGACTGCGATAAATTGCTCA
75922695 TTCAAGAATAAGCAACCCTTG
66 TTCAAGAATAAGCAACCCTTG
75922716 GTCA
1 GTCA
75922720 TGTTCCATAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (86 bp):
GTCACCATTGTGTTCTTAATGATTAAAATGAGATCTATCAACAAATGACTGCGATAAATTGCTCA
TTCAAGAATAAGCAACCCTTG
Found at i:75924594 original size:48 final size:48
Alignment explanation
Indices: 75924536--75924631 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
75924526 CACGCCATGT
75924536 GGCCAGGTCGTCTGGGCATTCGAAATGGGGACAAATGGCTGTGTCCCA
1 GGCCAGGTCGTCTGGGCATTCGAAATGGGGACAAATGGCTGTGTCCCA
75924584 GGCCAGGTCGTCTGGGCATTCGAAATGGGGACAAATGGCTGTGTCCCA
1 GGCCAGGTCGTCTGGGCATTCGAAATGGGGACAAATGGCTGTGTCCCA
75924632 ACCCGTGTCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.21
Consensus pattern (48 bp):
GGCCAGGTCGTCTGGGCATTCGAAATGGGGACAAATGGCTGTGTCCCA
Found at i:75927138 original size:11 final size:10
Alignment explanation
Indices: 75927117--75927147 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
75927107 ATTATCATGC
75927117 AAAATATATT
1 AAAATATATT
75927127 AAAATAATATT
1 AAAAT-ATATT
75927138 AAAATATATT
1 AAAATATATT
75927148 TTTGGACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATATATT
Found at i:75934189 original size:29 final size:29
Alignment explanation
Indices: 75934153--75934282 Score: 181
Period size: 29 Copynumber: 4.5 Consensus size: 29
75934143 TTTTTGTATC
*
75934153 GAAGCCTTTGTCGCTATCGT-TGTTAAAAG
1 GAAGCCTTTGTGGCTATC-TCTGTTAAAAG
* *
75934182 GAAGCCTTTATGGCTATCTTTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
* * *
75934211 AAAGCCTTTGTGTCGATCTCTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
*
75934240 GAAGCCTTTATGGCTATCTCTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
75934269 GAAGCCTTTGTGGC
1 GAAGCCTTTGTGGC
75934283 GATTGTACAC
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 1 0.01
29 87 0.99
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (29 bp):
GAAGCCTTTGTGGCTATCTCTGTTAAAAG
Found at i:75934235 original size:58 final size:58
Alignment explanation
Indices: 75934154--75934285 Score: 203
Period size: 58 Copynumber: 2.3 Consensus size: 58
75934144 TTTTGTATCG
* * *
75934154 AAGCCTTTGTCGCTATCGT-TGTTAAAAGGAAGCCTTTATGGCTATCTTTGTTAAAAGA
1 AAGCCTTTGTGGCGATC-TCTGTTAAAAGGAAGCCTTTATGGCTATCTCTGTTAAAAGA
* *
75934212 AAGCCTTTGTGTCGATCTCTGTTAAAAGGAAGCCTTTATGGCTATCTCTGTTAAAAGG
1 AAGCCTTTGTGGCGATCTCTGTTAAAAGGAAGCCTTTATGGCTATCTCTGTTAAAAGA
75934270 AAGCCTTTGTGGCGAT
1 AAGCCTTTGTGGCGAT
75934286 TGTACACTCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 1 0.01
58 66 0.99
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (58 bp):
AAGCCTTTGTGGCGATCTCTGTTAAAAGGAAGCCTTTATGGCTATCTCTGTTAAAAGA
Found at i:75938354 original size:46 final size:46
Alignment explanation
Indices: 75938287--75938506 Score: 243
Period size: 46 Copynumber: 4.8 Consensus size: 46
75938277 TGTAACCCGC
* *
75938287 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCTTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCATTCACAT
* * *
75938333 CCATAAGTGAAATCGAACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GGC-A-TTCACAT
* * * *
75938383 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
* *
75938426 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
75938472 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
75938507 AATGCCGAAA
Statistics
Matches: 147, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 3 0.02
45 4 0.03
46 98 0.67
47 25 0.17
48 2 0.01
49 3 0.02
50 4 0.03
51 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:75942442 original size:40 final size:40
Alignment explanation
Indices: 75942280--75942481 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
75942270 CGAATGATGT
*
75942280 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
75942320 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
75942359 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
75942397 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
75942438 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
75942478 CCGG
1 CCGG
75942482 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:75942444 original size:78 final size:79
Alignment explanation
Indices: 75942279--75942430 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
75942269 TCGAATGATG
* * *
75942279 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
75942344 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
75942359 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
75942422 GTGCAAGTC
65 GTGCAAGTC
75942431 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:75950460 original size:40 final size:40
Alignment explanation
Indices: 75950298--75950499 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
75950288 CGAATGATGT
*
75950298 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
75950338 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
75950377 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
75950415 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
75950456 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
75950496 CCGG
1 CCGG
75950500 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:75950462 original size:78 final size:79
Alignment explanation
Indices: 75950297--75950448 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
75950287 TCGAATGATG
* * *
75950297 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
75950362 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
75950377 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
75950440 GTGCAAGTC
65 GTGCAAGTC
75950449 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:75954200 original size:40 final size:40
Alignment explanation
Indices: 75954145--75954354 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75954135 AACATTGGAA
75954145 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75954185 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75954225 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75954265 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75954304 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75954345 CTATATCCGG
1 ATATATCCGG
75954355 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75962335 original size:40 final size:40
Alignment explanation
Indices: 75962280--75962489 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75962270 AACATTGGAA
75962280 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75962320 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75962360 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75962400 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75962439 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75962480 CTATATCCGG
1 ATATATCCGG
75962490 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75965219 original size:45 final size:45
Alignment explanation
Indices: 75965155--75965245 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
75965145 ATTAACTAAA
*
75965155 AACGGTTTTCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
1 AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
* *
75965200 AACGGTTTCCATACTAGTGGTCACCGCTGAGCCTCTGTCGGACCG
1 AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
75965245 A
1 A
75965246 CCTCCTATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25
Consensus pattern (45 bp):
AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
Found at i:75982889 original size:18 final size:18
Alignment explanation
Indices: 75982868--75982903 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
75982858 AGACAAACGG
75982868 ATGTGAGTTTTCAAAACT
1 ATGTGAGTTTTCAAAACT
75982886 ATGTGAGTTTTCAAAACT
1 ATGTGAGTTTTCAAAACT
75982904 CAGTGTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
ATGTGAGTTTTCAAAACT
Found at i:75990165 original size:5 final size:6
Alignment explanation
Indices: 75990134--75990173 Score: 62
Period size: 6 Copynumber: 6.3 Consensus size: 6
75990124 AAGGAATTTG
75990134 ATAAGAA ATAAAA ATTAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAA-AA ATAAAA A-TAAAA ATAAAA ATAAAA ATAAAA AT
75990174 TTGTCAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 22 0.69
7 10 0.31
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:75990325 original size:23 final size:23
Alignment explanation
Indices: 75990295--75990341 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
75990285 AAGCAAAAGT
75990295 TAACATTCACGCTCGTATAGGGA
1 TAACATTCACGCTCGTATAGGGA
75990318 TAACATTCACGCTCGTATAGGGA
1 TAACATTCACGCTCGTATAGGGA
75990341 T
1 T
75990342 CCGAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TAACATTCACGCTCGTATAGGGA
Found at i:75997305 original size:46 final size:45
Alignment explanation
Indices: 75997246--75997420 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
75997236 ACATCTCATA
75997246 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAG
* * * * *
75997292 GCCGATGCATGTCCCAGACATGTCTTATACTAGCACTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAG
** * * * * *
75997338 GCTAATGCCATGTCCCAGGCATGGTCTTACATTGGCTCTCGTAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAG
*
75997386 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
75997421 CACACAAGTG
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
46 56 0.55
47 26 0.26
48 18 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAG
Found at i:75997366 original size:94 final size:92
Alignment explanation
Indices: 75997158--75997424 Score: 238
Period size: 94 Copynumber: 2.8 Consensus size: 92
75997148 ACATCGACGT
* * * * ** * *
75997158 CATGTCCCAGACATGATCTTACACAAGTTTTAGTATATTTGTGCTGATGCCATGTCCCATACATG
1 CATGTCCCAGACATG-TCTTACACTAGCTCTCGTA-ATGAG-GCCGATG-CATGTCCCAAACAT-
*
75997223 GTCTTACACT-G-ACACATCTCATAGCCGATG
61 GTCTTACACTAGCACACATCTCATAGCCAATG
* *
75997253 CATGTCCCAGACATGTCTTACACTAGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTAAT-GAGGCCGATGCATGTCCCAAACATGTC
* * *
75997316 TTATACTAGCACTCATCTCA-ATGCTAATG
64 TTACACTAGCACACATCTCATA-GCCAATG
* * * *
75997345 CCATGTCCCAGGCATGGTCTTACATTGGCTCTCGTAATGTGGCCGATGCATGTCCCAAACATGTC
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAATGAGGCCGATGCATGTCCCAAACATGTC
*
75997410 TTACACTAGCTCACA
64 TTACACTAGCACACA
75997425 CAAGTGACCC
Statistics
Matches: 142, Mismatches: 21, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
90 9 0.06
91 15 0.11
92 21 0.15
93 15 0.11
94 65 0.46
95 17 0.12
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGAGGCCGATGCATGTCCCAAACATGTCTT
ACACTAGCACACATCTCATAGCCAATG
Found at i:76002015 original size:19 final size:20
Alignment explanation
Indices: 76001977--76002015 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
76001967 AGGTATAAAA
*
76001977 TTATTAAAAGTATAATATTT
1 TTATTAAAAATATAATATTT
76001997 TTATTAAAAATAT-ATATTT
1 TTATTAAAAATATAATATTT
76002016 GAAAGCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TTATTAAAAATATAATATTT
Found at i:76003062 original size:2 final size:2
Alignment explanation
Indices: 76003055--76003085 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
76003045 TTATAACAAT
76003055 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76003086 GTGTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76007090 original size:6 final size:6
Alignment explanation
Indices: 76007079--76007117 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
76007069 TTGGTTGCTC
76007079 TGCCCA TGCCCA TGCCCA TGCCCA TGCCCA TGCCCA TGC
1 TGCCCA TGCCCA TGCCCA TGCCCA TGCCCA TGCCCA TGC
76007118 TGGGGATAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.49, G:0.18, T:0.18
Consensus pattern (6 bp):
TGCCCA
Found at i:76009003 original size:6 final size:6
Alignment explanation
Indices: 76008992--76009020 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
76008982 TTAATGTATG
76008992 TATACA TATACA TATACA TATACA TATAC
1 TATACA TATACA TATACA TATACA TATAC
76009021 TATTTGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
TATACA
Found at i:76010091 original size:26 final size:28
Alignment explanation
Indices: 76010055--76010106 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
76010045 TTAACCATTC
76010055 TTAAAAAAATAA-AAAAATA-AAATTTG
1 TTAAAAAAATAAGAAAAATATAAATTTG
* *
76010081 TTAAAAGAATAAGAAATATATAAATT
1 TTAAAAAAATAAGAAAAATATAAATT
76010107 ATAAAACTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 6 0.27
28 5 0.23
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (28 bp):
TTAAAAAAATAAGAAAAATATAAATTTG
Found at i:76010165 original size:24 final size:24
Alignment explanation
Indices: 76010138--76010183 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
76010128 ATATATATAT
76010138 ATATGAGAAA-TAAAAATAAAAATA
1 ATAT-AGAAATTAAAAATAAAAATA
* *
76010162 ATATATAAATTGAAAATAAAAA
1 ATATAGAAATTAAAAATAAAAA
76010184 ATAAAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (24 bp):
ATATAGAAATTAAAAATAAAAATA
Found at i:76010166 original size:30 final size:31
Alignment explanation
Indices: 76010125--76010190 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
76010115 TCAAAAAAGG
*
76010125 AATATATATATATATATGAGAAAT-AAAAATAAA
1 AATA-ATATATAAAT-TGA-AAATAAAAAATAAA
76010158 AATAATATATAAATTGAAAATAAAAAATAAA
1 AATAATATATAAATTGAAAATAAAAAATAAA
76010189 AA
1 AA
76010191 ATTTAGTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 4 0.13
31 14 0.45
32 9 0.29
33 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (31 bp):
AATAATATATAAATTGAAAATAAAAAATAAA
Found at i:76010715 original size:2 final size:2
Alignment explanation
Indices: 76010708--76010744 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
76010698 ATTCAAGGGA
76010708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76010745 AGCATTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76011999 original size:28 final size:27
Alignment explanation
Indices: 76011952--76012030 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
76011942 TTTAATTATA
*
76011952 AAAATTAATACAAAATTTTAATTATATAAAT
1 AAAA-TAATAC-AAA-TTTAATTAAAT-AAT
*
76011983 AAAA-AATGA-AAGATTTAATAAAATAAT
1 AAAATAAT-ACAA-ATTTAATTAAATAAT
76012010 AAAATAATACAAATTTAATTA
1 AAAATAATACAAATTTAATTA
76012031 CTTTTTAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 16 0.39
28 16 0.39
29 4 0.10
30 1 0.02
31 4 0.10
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAATAATACAAATTTAATTAAATAAT
Found at i:76012025 original size:27 final size:28
Alignment explanation
Indices: 76011952--76012028 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 28
76011942 TTTAATTATA
* *
76011952 AAAATTAATACAAAATTTTAATTATATAAAT
1 AAAA-TAATAC-AAA-TTTAATAAAATAAAT
76011983 AAAA-AATGA-AAGATTTAATAAAAT-AAT
1 AAAATAAT-ACAA-ATTTAATAAAATAAAT
76012010 AAAATAATACAAATTTAAT
1 AAAATAATACAAATTTAAT
76012029 TACTTTTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
27 15 0.38
28 16 0.40
29 4 0.10
30 1 0.03
31 4 0.10
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAATAATACAAATTTAATAAAATAAAT
Found at i:76012488 original size:17 final size:20
Alignment explanation
Indices: 76012449--76012488 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
76012439 TTTTATAAAC
*
76012449 ATTTTATATATATTTTTATA
1 ATTTTATATATATTTCTATA
76012469 ATTTT-TATA-ATTTCTA-A
1 ATTTTATATATATTTCTATA
76012486 ATT
1 ATT
76012489 ATTTTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 4 0.21
20 5 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTATATATATTTCTATA
Found at i:76017607 original size:37 final size:37
Alignment explanation
Indices: 76017557--76017634 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
76017547 TATAAAAGAA
76017557 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
76017594 GTCTTACCCGGTCATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
76017631 GTCT
1 GTCT
76017635 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:76017797 original size:49 final size:49
Alignment explanation
Indices: 76017737--76017859 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
76017727 CATATATTTT
*
76017737 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
76017786 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
76017835 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
76017860 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:76020883 original size:40 final size:41
Alignment explanation
Indices: 76020839--76020937 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
76020829 TCGATTGTTC
* * **
76020839 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
76020879 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
76020920 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
76020938 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:76021458 original size:29 final size:29
Alignment explanation
Indices: 76021421--76021842 Score: 763
Period size: 29 Copynumber: 14.6 Consensus size: 29
76021411 TGTTGAAAAA
* *
76021421 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
76021450 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
76021479 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021508 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021537 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021566 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021595 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021624 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021653 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021682 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021711 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021740 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
76021769 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
76021798 CTCGCACACATAGTGCCTCGATTACTGGT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
76021827 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
76021843 TCGGTTAACG
Statistics
Matches: 385, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 385 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:76023898 original size:37 final size:37
Alignment explanation
Indices: 76023848--76023925 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
76023838 TATAAAAGAA
76023848 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
76023885 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
76023922 GTCT
1 GTCT
76023926 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:76024088 original size:49 final size:49
Alignment explanation
Indices: 76024028--76024150 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
76024018 CATATATTTT
*
76024028 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
76024077 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
76024126 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
76024151 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:76027323 original size:10 final size:10
Alignment explanation
Indices: 76027296--76027354 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
76027286 TTAAATTCTA
76027296 AAAGATAAAT
1 AAAGATAAAT
76027306 ACAA-ATAAAT
1 A-AAGATAAAT
*
76027316 AAAGATAATT
1 AAAGATAAAT
76027326 AAAGATAAAT
1 AAAGATAAAT
*
76027336 AAGGATAAAT
1 AAAGATAAAT
76027346 AAAGATAAA
1 AAAGATAAA
76027355 AGCTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76028005 original size:11 final size:11
Alignment explanation
Indices: 76027983--76028014 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
76027973 CTTTTTTTTC
76027983 TTTTTCTA-TT
1 TTTTTCTATTT
76027993 TTTTTCTATTT
1 TTTTTCTATTT
76028004 TTTTTCT-TTT
1 TTTTTCTATTT
76028014 T
1 T
76028015 ATCATCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTCTATTT
Found at i:76028210 original size:99 final size:98
Alignment explanation
Indices: 76028022--76028199 Score: 266
Period size: 99 Copynumber: 1.8 Consensus size: 98
76028012 TTTATCATCA
* * * *
76028022 TTATTATTATTTCTTAAGAATACATTGAATCTTTTGATGCGAAGAGAGATGACAACCAAACACCC
1 TTATTATTATTTCTTAAGAACACATCGAACCTTTTGACGCGAAGAGAGATGACAACCAAACACCC
76028087 CACCCTGGTTACTCAGCCCAACATACTCTTAAT
66 CACCCTGGTTACTCAGCCCAACATACTCTTAAT
* * * *
76028120 TTATTATATTTTTCTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC
1 TTATTAT-TATTTCTTAAGAACACATCGAACCTTTTGACGCGAAGAGAGATGACAACCAAACACC
*
76028185 CCACCCTTGTTACTC
65 CCACCCTGGTTACTC
76028200 GGTCTAACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
98 7 0.10
99 63 0.90
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (98 bp):
TTATTATTATTTCTTAAGAACACATCGAACCTTTTGACGCGAAGAGAGATGACAACCAAACACCC
CACCCTGGTTACTCAGCCCAACATACTCTTAAT
Found at i:76029319 original size:8 final size:7
Alignment explanation
Indices: 76029306--76029380 Score: 59
Period size: 8 Copynumber: 10.3 Consensus size: 7
76029296 ATTCAAACAA
76029306 AATAAAGT
1 AATAAA-T
76029314 AATAAAT
1 AATAAAT
76029321 AAT-AA-
1 AATAAAT
76029326 AATAAAAT
1 AAT-AAAT
76029334 AA-AGTAAT
1 AATA--AAT
76029342 AAATAAAT
1 -AATAAAT
76029350 AATAAAAT
1 AAT-AAAT
76029358 AATAAAT
1 AATAAAT
76029365 AATAAAAT
1 AAT-AAAT
76029373 AA-AAAT
1 AATAAAT
76029379 AA
1 AA
76029381 AGAAAAATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 20
0.74 0.00 0.26
Matches are distributed among these distances:
5 3 0.05
6 9 0.16
7 16 0.28
8 27 0.47
9 2 0.03
10 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (7 bp):
AATAAAT
Found at i:76029347 original size:29 final size:29
Alignment explanation
Indices: 76029314--76029391 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
76029304 AAAATAAAGT
76029314 AATAAATAATAAAATAAAATAAAGTAAT-A
1 AATAAATAATAAAATAAAATAAA-TAATAA
76029343 AATAAATAATAAAAT--AATAAATAATAA
1 AATAAATAATAAAATAAAATAAATAATAA
76029370 AATAAA-AATAAAGA-AAAATAAA
1 AATAAATAATAAA-ATAAAATAAA
76029392 AATTGGGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
26 10 0.22
27 14 0.31
28 6 0.13
29 15 0.33
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (29 bp):
AATAAATAATAAAATAAAATAAATAATAA
Found at i:76029361 original size:44 final size:43
Alignment explanation
Indices: 76029306--76029391 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
76029296 ATTCAAACAA
*
76029306 AATAAAGTAATAAATAATAAAAT-AAAATAAAGTAATAAATAAAT
1 AATAAAATAATAAATAATAAAATAAAAATAAAG-AA-AAATAAAT
76029350 AATAAAATAATAAATAATAAAATAAAAATAAAGAAAAATAAA
1 AATAAAATAATAAATAATAAAATAAAAATAAAGAAAAATAAA
76029392 AATTGGGTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 7 0.17
44 24 0.60
45 9 0.22
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (43 bp):
AATAAAATAATAAATAATAAAATAAAAATAAAGAAAAATAAAT
Found at i:76029386 original size:15 final size:15
Alignment explanation
Indices: 76029324--76029394 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
76029314 AATAAATAAT
76029324 AAAAT-AAAATAAAG
1 AAAATAAAAATAAAG
* *
76029338 -TAATAAATAA-ATAAT
1 AAAATAAA-AATA-AAG
*
76029353 AAAATAATAAAT-AAT
1 AAAATAA-AAATAAAG
76029368 AAAATAAAAATAAAG
1 AAAATAAAAATAAAG
76029383 AAAAATAAAAAT
1 -AAAATAAAAAT
76029395 TGGGTTGCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
13 3 0.07
14 7 0.16
15 16 0.36
16 18 0.40
17 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAATAAAAATAAAG
Found at i:76029557 original size:21 final size:21
Alignment explanation
Indices: 76029531--76029616 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 21
76029521 CATATTTGGG
76029531 TTGAATTGTCCCTACACCTTT
1 TTGAATTGTCCCTACACCTTT
**
76029552 TTGAATTGTCATCC-ACCATATTT
1 TTGAATTGTC--CCTA-CACCTTT
76029575 GGGTTGAATTGTCCCTACACCTTT
1 ---TTGAATTGTCCCTACACCTTT
76029599 TTGAATTGTCCCTACACC
1 TTGAATTGTCCCTACACC
76029617 ACTTTCTTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
21 28 0.52
22 1 0.02
23 7 0.13
24 7 0.13
25 1 0.02
26 10 0.19
ACGTcount: A:0.21, C:0.27, G:0.13, T:0.40
Consensus pattern (21 bp):
TTGAATTGTCCCTACACCTTT
Found at i:76029566 original size:47 final size:47
Alignment explanation
Indices: 76029514--76029608 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
76029504 CCTTTTATCA
76029514 CATCCACCATATTTGGGTTGAATTGTCCCTACACCTTTTTGAATTGT
1 CATCCACCATATTTGGGTTGAATTGTCCCTACACCTTTTTGAATTGT
76029561 CATCCACCATATTTGGGTTGAATTGTCCCTACACCTTTTTGAATTGT
1 CATCCACCATATTTGGGTTGAATTGTCCCTACACCTTTTTGAATTGT
76029608 C
1 C
76029609 CCTACACCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (47 bp):
CATCCACCATATTTGGGTTGAATTGTCCCTACACCTTTTTGAATTGT
Done.