Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 248 of 425
Found at i:76033237 original size:10 final size:10
Alignment explanation
Indices: 76033210--76033268 Score: 66
Period size: 10 Copynumber: 5.9 Consensus size: 10
76033200 TTAAATTCTA
76033210 AAAGATAAAT
1 AAAGATAAAT
76033220 ACAA-ATAAAT
1 A-AAGATAAAT
*
76033230 AAAGATAATT
1 AAAGATAAAT
*
76033240 AAAGAAAAAT
1 AAAGATAAAT
**
76033250 AGGGATAAAT
1 AAAGATAAAT
76033260 AAAGATAAA
1 AAAGATAAA
76033269 AGTTAAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 2 0.05
10 35 0.90
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.12, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76033244 original size:30 final size:30
Alignment explanation
Indices: 76033210--76033267 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76033200 TTAAATTCTA
*
76033210 AAAGATAAATACAAATAAATAAAGATAATT
1 AAAGAAAAATACAAATAAATAAAGATAATT
***
76033240 AAAGAAAAATAGGGATAAATAAAGATAA
1 AAAGAAAAATACAAATAAATAAAGATAA
76033268 AAGTTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (30 bp):
AAAGAAAAATACAAATAAATAAAGATAATT
Found at i:76036731 original size:16 final size:17
Alignment explanation
Indices: 76036704--76036736 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
76036694 ACTTACTTAA
76036704 TACTTGATAATCTCAAT
1 TACTTGATAATCTCAAT
76036721 TACTT-ATAATCTCAAT
1 TACTTGATAATCTCAAT
76036737 ATTAAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.42
Consensus pattern (17 bp):
TACTTGATAATCTCAAT
Found at i:76037035 original size:54 final size:54
Alignment explanation
Indices: 76036853--76037046 Score: 239
Period size: 55 Copynumber: 3.6 Consensus size: 54
76036843 TTACCATTGA
* * * * *
76036853 CATGTCTTGAGATGGTCTTACATGGTATGCTTGCCTTAT-GAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
* * * *
76036906 CATGCCTTGACATGGTCTTACATGAGA-CTTTTTCCTTATAGTAACTCATCAATAC
1 CATGCCTTGACATGGTCTTACATGATATC-CTTGCCTTATAG-AACTCATCAATGC
* * *
76036961 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
*
76037015 CATGCCTTGGCATGGTCTTACATGATATCCTT
1 CATGCCTTGACATGGTCTTACATGATATCCTT
76037047 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
53 31 0.26
54 41 0.35
55 45 0.38
56 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (54 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
Found at i:76037080 original size:47 final size:47
Alignment explanation
Indices: 76037025--76037146 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
76037015 CATGCCTTGG
* * *
76037025 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCTAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
76037072 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
76037119 CATGGTCTTCCATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
76037147 GTACTAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:76037220 original size:47 final size:46
Alignment explanation
Indices: 76037169--76037374 Score: 197
Period size: 45 Copynumber: 4.5 Consensus size: 46
76037159 AATCTTGATG
*
76037169 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGATA
1 TGGTCTTACATGGA-TCCTTAATCAATGCCGATGCCATGTCTTGACA
* * ** * *
76037216 TGGTCTTACACAGGATCCTT--GCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-TGGATCCTTAATCAATGCCGATGCCATGTCTTGACA
*
76037261 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCTTGTCTTGACA
1 TGGTCTTACATGG-ATCCTTAATCAATGCCGATGCCATGTCTTGACA
* ** * * *
76037308 TGGTCTTACACGGGATCCTT-GCCTTAT--CAATACCATGTCTTGACA
1 TGGTCTTACA-TGGATCCTTAATC-AATGCCGATGCCATGTCTTGACA
76037353 TGGTCTTACATGGTATCCTTAA
1 TGGTCTTACATGG-ATCCTTAA
76037375 CCGTCAATTC
Statistics
Matches: 128, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
44 4 0.03
45 66 0.52
46 1 0.01
47 52 0.41
48 5 0.04
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (46 bp):
TGGTCTTACATGGATCCTTAATCAATGCCGATGCCATGTCTTGACA
Found at i:76037280 original size:92 final size:92
Alignment explanation
Indices: 76037169--76037374 Score: 351
Period size: 92 Copynumber: 2.2 Consensus size: 92
76037159 AATCTTGATG
*
76037169 TGGTCTTACATGG-AGTCCTTAATCAATGCCGATGCCATGTCTTGATATGGTCTTACACAGGATC
1 TGGTCTTACATGGTA-TCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATC
*
76037233 CTTGCCTTACCAATGCCATGTCTTGACA
65 CTTGCCTTACCAATACCATGTCTTGACA
* *
76037261 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCTTGTCTTGACATGGTCTTACACGGGATCC
1 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATCC
*
76037326 TTGCCTTATCAATACCATGTCTTGACA
66 TTGCCTTACCAATACCATGTCTTGACA
76037353 TGGTCTTACATGGTATCCTTAA
1 TGGTCTTACATGGTATCCTTAA
76037375 CCGTCAATTC
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 107 0.99
93 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (92 bp):
TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATCC
TTGCCTTACCAATACCATGTCTTGACA
Found at i:76041498 original size:48 final size:48
Alignment explanation
Indices: 76041416--76041875 Score: 449
Period size: 48 Copynumber: 9.5 Consensus size: 48
76041406 ATACTAGGGT
* * *
76041416 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* * * * * *
76041464 TAGGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* * *
76041512 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* * * * **
76041560 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* *
76041608 TATGAGAGCTAGTGTAAGACCATCTCT-GAGACATGGCATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCGGCCTCAA
* * **
76041656 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* * * * *
76041704 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCAGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
* * * * * ***
76041752 TATGCGAGCCAATGTAAGACCATGTTTGGAATATGGCATC-ACCATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCC-TCAA
* * * * * *
76041800 TATGTA-AACTAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATG
1 TATG-AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCA-A
* *
76041850 TATGAGAGCCAGCGTAAGATCATGTC
1 TATGAGAGCCAGTGTAAGACCATGTC
76041876 CGGGATATAG
Statistics
Matches: 328, Mismatches: 76, Indels: 14
0.78 0.18 0.03
Matches are distributed among these distances:
47 4 0.01
48 298 0.91
49 5 0.02
50 21 0.06
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAA
Found at i:76041580 original size:96 final size:96
Alignment explanation
Indices: 76041416--76041838 Score: 652
Period size: 96 Copynumber: 4.4 Consensus size: 96
76041406 ATACTAGGGT
*
76041416 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATAGGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAA
*
76041481 GACCATGTTTGGAACATGGCATCGACATTAA
66 GACCATGTTTGGAACATGGCATCGACATTGA
* *
76041512 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAA
* *
76041577 GACCATGTTTGGAACATGACATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGACATTGA
* * *
76041608 TATGAGAGCTAGTGTAAGACCATCTCTGAGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAA
* *
76041673 GACCATGTCTGGAACATGGCATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGACATTGA
* * * *
76041704 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCAGCCTCAATATGCGAGCCAATGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAA
* *
76041769 GACCATGTTTGGAATATGGCATC-ACCATTGT
66 GACCATGTTTGGAACATGGCATCGA-CATTGA
*
76041800 TATGTA-AACTAGTGTAAGACCATGTCTGGGACATGGCAT
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
76041839 TGGCACTGAT
Statistics
Matches: 300, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
96 299 1.00
97 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGACATTGA
Found at i:76041751 original size:192 final size:192
Alignment explanation
Indices: 76041416--76041895 Score: 665
Period size: 192 Copynumber: 2.5 Consensus size: 192
76041406 ATACTAGGGT
* *
76041416 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATAGGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* * *
76041481 GACCATGTTTGGAACATGGCATCGACATTAATATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
66 GACCATGTCTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAAACCATGTCTGGGACAT
* * * * **
76041546 GGTATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGA
131 GGCATCAGCCTCAATATGCGAGCCAATGTAAGACCATGTTTGGAACATGACATCACCATTGA
* *
76041608 TATGAGAGCTAGTGTAAGACCATCTCTGAGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* *
76041673 GACCATGTCTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTTTGGGACAT
66 GACCATGTCTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAAACCATGTCTGGGACAT
* * *
76041738 GGCATCAGCCTCAATATGCGAGCCAATGTAAGACCATGTTTGGAATATGGCATCACCATTGT
131 GGCATCAGCCTCAATATGCGAGCCAATGTAAGACCATGTTTGGAACATGACATCACCATTGA
* * * * * *
76041800 TATGTA-AACTAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATGTATGAGAGCCAGCG
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATATGTGAGCCAGTG
* * * * *
76041864 TAAGATCATGTCCGGGATATAGCATCGGCATT
63 TAAGACCATGTCTGGAACATGGCATCGGCATT
76041896 TTACCCTTTT
Statistics
Matches: 254, Mismatches: 31, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
192 211 0.83
193 4 0.02
194 39 0.15
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (192 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
GACCATGTCTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAAAACCATGTCTGGGACAT
GGCATCAGCCTCAATATGCGAGCCAATGTAAGACCATGTTTGGAACATGACATCACCATTGA
Found at i:76047260 original size:21 final size:21
Alignment explanation
Indices: 76047236--76047295 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
76047226 GCCATTTTTA
*
76047236 ATTTATTGTTAATTTTTAGAG
1 ATTTATTGTTAATTTTTAGAC
*
76047257 ATTTATTTGCTT-ATTTTTAGTC
1 ATTTA-TTG-TTAATTTTTAGAC
**
76047279 ATTGGTTGTTAATTTTT
1 ATTTATTGTTAATTTTT
76047296 TTTTTACTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 2 0.06
21 14 0.44
22 14 0.44
23 2 0.06
ACGTcount: A:0.22, C:0.03, G:0.13, T:0.62
Consensus pattern (21 bp):
ATTTATTGTTAATTTTTAGAC
Found at i:76051830 original size:59 final size:54
Alignment explanation
Indices: 76051705--76051839 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
76051695 TTACAGCGGG
* * *
76051705 ATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTTGGA
1 ATTACCAGTCCAGGCTAAATCCCCTACAACATAAACTCAAAGAGTATTGTTGGA
* * *
76051759 ATTACTAGTCCAGGCTAAATCCCCTACAACGGCATATACTCAAATGAG-ATTGGATTTGA
1 ATTACCAGTCCAGGCTAAATCCCCTACAA---CATAAACTCAAA-GAGTATT-G-TTGGA
76051818 ATTACCAGTCCAGGCTAAATCC
1 ATTACCAGTCCAGGCTAAATCC
76051840 GTTCACACAT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
54 27 0.40
57 12 0.18
58 4 0.06
59 25 0.37
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (54 bp):
ATTACCAGTCCAGGCTAAATCCCCTACAACATAAACTCAAAGAGTATTGTTGGA
Found at i:76060277 original size:27 final size:27
Alignment explanation
Indices: 76060236--76060289 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76060226 TGTCATGTGA
* *
76060236 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
76060263 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
76060290 GGTTGTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:76060716 original size:50 final size:49
Alignment explanation
Indices: 76060535--76060763 Score: 284
Period size: 50 Copynumber: 4.7 Consensus size: 49
76060525 TCTATTGTGA
* * * *
76060535 GGTCACGTGTGTAGTACTAAGTGCAGGCTACGAC-TATACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT
* * *
76060583 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-TT
* * * * **
76060633 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT
76060683 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAA-T
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT
*
76060731 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
76060764 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
47 32 0.21
48 31 0.20
49 13 0.08
50 41 0.26
51 38 0.25
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT
Found at i:76060724 original size:101 final size:95
Alignment explanation
Indices: 76060537--76060763 Score: 292
Period size: 101 Copynumber: 2.3 Consensus size: 95
76060527 TATTGTGAGG
* * *
76060537 TCACGTGTGTAGTACTAAGTGCAGGCTACGACTATACCGGATAATTGGTCGCATGTGTAGTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACTATACCAGATAATTGGTCACATGTGTAGTACTA
*
76060602 AGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AGTGCAGGCTACTACGCGTA-CCGATAA--T-GA
* * **
76060636 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC-TATACCAGATAATT-GGTCACATGTGTAGTAC
* *
76060701 TAAGTGCAGGCTACTACGTGTACCGATAATGG
64 TAAGTGCAGGCTACTACGCGTACCGATAATGA
* *
76060733 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
76060764 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
97 30 0.26
98 1 0.01
99 31 0.27
100 16 0.14
101 36 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (95 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACTATACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCGATAATGA
Found at i:76066215 original size:27 final size:27
Alignment explanation
Indices: 76066174--76066227 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76066164 TGTCATGTGA
* *
76066174 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
76066201 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
76066228 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:76067951 original size:46 final size:44
Alignment explanation
Indices: 76067846--76067953 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
76067836 TGTCTTTGAC
** * * *
76067846 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
76067890 ATGGAATTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
76067936 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
76067954 TTTTTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:76075324 original size:46 final size:44
Alignment explanation
Indices: 76075221--76075327 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 44
76075211 TGTCTTTGAC
** * * *
76075221 TGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAATA
1 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAATA
*
76075265 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATA
1 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAATA
76075311 TGGACTTACATGGCTCA
1 TGGACTTACATGGCTCA
76075328 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAATA
Found at i:76076650 original size:49 final size:50
Alignment explanation
Indices: 76076535--76076654 Score: 152
Period size: 49 Copynumber: 2.4 Consensus size: 50
76076525 GGGATGTTAA
* * ** *
76076535 AGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGT
1 AGTACTAAGTGCAGGCTACTACATATACCAGATAATTAGGTCACATGTGT
* * * *
76076585 AGTACTAAGTGTAGGCTACTACGTATACCGGATAATT-GGTCGCATGTGT
1 AGTACTAAGTGCAGGCTACTACATATACCAGATAATTAGGTCACATGTGT
76076634 AGTACTAAGTGCAGGCTACTA
1 AGTACTAAGTGCAGGCTACTA
76076655 TGCGTACGAG
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 30 0.50
50 30 0.50
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGTACTAAGTGCAGGCTACTACATATACCAGATAATTAGGTCACATGTGT
Found at i:76076668 original size:49 final size:51
Alignment explanation
Indices: 76076535--76076668 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 51
76076525 GGGATGTTAA
* * ** *
76076535 AGTACTAAGTGCAGGCTACTACATGTATC-AGATGGTTAGGTCACGTGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCGAGATAATTAGGTCACATGTGT
* * *
76076585 AGTACTAAGTGTAGGCTACTACGTATACCG-GATAATT-GGTCGCATGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTACCGAGATAATTAGGTCACATGTGT
* *
76076634 AGTACTAAGTGCAGGCTACTATGCGTA-CGAGATAA
1 AGTACTAAGTGCAGGCTACTACGTGTACCGAGATAA
76076669 CCTTGTCTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.03
49 38 0.54
50 30 0.43
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (51 bp):
AGTACTAAGTGCAGGCTACTACGTGTACCGAGATAATTAGGTCACATGTGT
Found at i:76078362 original size:22 final size:21
Alignment explanation
Indices: 76078332--76078375 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
76078322 ACACACATCA
76078332 TCTAAGTTTTGGC-CTTAGTTTT
1 TCTAAGTTTT--CTCTTAGTTTT
*
76078354 TCTAGGTTTTCTCTTAGTTTT
1 TCTAAGTTTTCTCTTAGTTTT
76078375 T
1 T
76078376 TTGCAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 10 0.50
22 9 0.45
ACGTcount: A:0.11, C:0.14, G:0.16, T:0.59
Consensus pattern (21 bp):
TCTAAGTTTTCTCTTAGTTTT
Found at i:76082091 original size:40 final size:40
Alignment explanation
Indices: 76082025--76082175 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
76082015 AAATTGAATG
* * *
76082025 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76082064 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76082104 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
76082144 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
76082176 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76082189 original size:40 final size:40
Alignment explanation
Indices: 76082062--76082191 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
76082052 ATGCTGGAAA
* * *
76082062 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
76082102 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
76082142 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
76082182 TTATATCCGG
1 TTATATCCGG
76082192 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:76090109 original size:40 final size:40
Alignment explanation
Indices: 76090043--76090193 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
76090033 AAATTGAATG
* * *
76090043 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76090082 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76090122 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
76090162 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
76090194 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76090207 original size:40 final size:40
Alignment explanation
Indices: 76090080--76090209 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
76090070 ATGCTGGAAA
* * *
76090080 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
76090120 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
76090160 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
76090200 TTATATCCGG
1 TTATATCCGG
76090210 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:76092061 original size:20 final size:20
Alignment explanation
Indices: 76092033--76092076 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
76092023 TACTAACTTG
* *
76092033 CAACTTACCATAATCTTTTA
1 CAACATACCATAATCTTTCA
*
76092053 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
76092073 CAAC
1 CAAC
76092077 TTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:76092209 original size:42 final size:42
Alignment explanation
Indices: 76092162--76092271 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
76092152 TACCATACCA
*
76092162 ATGCCATATCCCAGATATGGTCTTACATGGAA-TCTCATA-TCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAGTCTCATAGT-G
* *
76092204 ATGCCAATAGCCCAGTTATGGTCTTACACGAAGTCTCATAGTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAGTG
* * *
76092247 ATGCCATATCCTATATATAGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
76092272 GACGTAATCT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
42 23 0.40
43 33 0.58
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAGTG
Found at i:76103556 original size:27 final size:27
Alignment explanation
Indices: 76103517--76103580 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
76103507 ACCTAAATCC
*
76103517 CCTATTTGATAAAATGAACGTTATGC-
1 CCTATGTGATAAAATGAACGTTATGCT
**
76103543 CTCTATGTGATAAAATGATTGTTATGCT
1 C-CTATGTGATAAAATGAACGTTATGCT
76103571 CCTATGTGAT
1 CCTATGTGAT
76103581 GTATGATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 31 0.94
28 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (27 bp):
CCTATGTGATAAAATGAACGTTATGCT
Found at i:76106466 original size:42 final size:41
Alignment explanation
Indices: 76106399--76106502 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 41
76106389 GGATTAGACT
* *
76106399 ACTGGCTC-GAAGGCCCTTCGGAACTAAGTCCGGTTATGA-C
1 ACTGGCTCAAAAGG-CCTTCGAAACTAAGTCCGGTTATGAGC
* *
76106439 ACTGGCTCTAAAAAGGCCTTCGAAACTAAGTTCGGTTATTAGC
1 ACTGGCTC--AAAAGGCCTTCGAAACTAAGTCCGGTTATGAGC
*
76106482 ACTGGCTCAAAAGCCCTTCGA
1 ACTGGCTCAAAAGGCCTTCGA
76106503 GACCAAGCTC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
40 8 0.15
41 12 0.22
42 22 0.40
43 13 0.24
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (41 bp):
ACTGGCTCAAAAGGCCTTCGAAACTAAGTCCGGTTATGAGC
Found at i:76106485 original size:43 final size:40
Alignment explanation
Indices: 76106362--76106502 Score: 126
Period size: 41 Copynumber: 3.4 Consensus size: 40
76106352 CTTAGCACCA
* * *
76106362 GCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-GACTACTG
1 GCTCAAAAGGCCTTCGAAACTAAGTC-CGG-TTATGAC-ACTG
* *
76106403 GCTC-GAAGGCCCTTCGGAACTAAGTCCGGTTATGACACTG
1 GCTCAAAAGG-CCTTCGAAACTAAGTCCGGTTATGACACTG
* *
76106443 GCTCTAAAAAGGCCTTCGAAACTAAGTTCGGTTATTAGCACTG
1 GCTC--AAAAGGCCTTCGAAACTAAGTCCGGTTATGA-CACTG
*
76106486 GCTCAAAAGCCCTTCGA
1 GCTCAAAAGGCCTTCGA
76106503 GACCAAGCTC
Statistics
Matches: 83, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
40 14 0.17
41 33 0.40
42 23 0.28
43 13 0.16
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
GCTCAAAAGGCCTTCGAAACTAAGTCCGGTTATGACACTG
Found at i:76111728 original size:40 final size:40
Alignment explanation
Indices: 76111673--76111882 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76111663 GAACATTGAA
76111673 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76111713 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76111753 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76111793 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76111832 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76111873 CTATATCCGG
1 ATATATCCGG
76111883 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76124245 original size:68 final size:70
Alignment explanation
Indices: 76124173--76124370 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
76124163 ACACCCTGTA
* * * *
76124173 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
76124235 ATAAAT
65 ATAAAT
*
76124241 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
76124306 ATAAAT
65 ATAAAT
*
76124312 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
76124371 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:76124284 original size:41 final size:41
Alignment explanation
Indices: 76124239--76124356 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76124229 TGAAAGATAA
76124239 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76124280 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76124310 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76124351 ATGTAG
1 ATGTAG
76124357 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76124296 original size:71 final size:71
Alignment explanation
Indices: 76124207--76124370 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76124197 GAGATGTATC
76124207 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76124272 AGGACA
66 AGGACA
76124278 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76124343 AGGACA
66 AGGACA
76124349 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76124371 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76132246 original size:39 final size:39
Alignment explanation
Indices: 76132192--76132369 Score: 259
Period size: 39 Copynumber: 4.6 Consensus size: 39
76132182 ATCATAATTG
* *
76132192 TATGTACTGAAATTATATCCGGACTTCAGGTCCACAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
*
76132231 TATGTGCTAGAATTATATCCGGACTTCAGGTCCGA-AGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCC-ACAGGC
*
76132270 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
* * * *
76132309 TATGTGCTGGAATTTTATCCGAACTGCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
*
76132348 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
76132370 GCTTAAATTC
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 125 0.99
40 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
Found at i:76145930 original size:13 final size:13
Alignment explanation
Indices: 76145908--76145940 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76145898 AAGGGTTTGT
76145908 TTAT-TAAACTAA
1 TTATCTAAACTAA
76145920 TTATCTAAACTAA
1 TTATCTAAACTAA
*
76145933 TTAACTAA
1 TTATCTAA
76145941 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:76148856 original size:5 final size:5
Alignment explanation
Indices: 76148846--76148912 Score: 54
Period size: 5 Copynumber: 13.8 Consensus size: 5
76148836 TATGTCTTTC
* *
76148846 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAC AAAAT AAAAT AAAAT -AAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
76148895 -AAA- AAAAT AAGAAT AAAA
1 AAAAT AAAAT AA-AAT AAAA
76148913 AGATAGGAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
3 3 0.06
4 10 0.20
5 26 0.51
6 12 0.24
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:76154282 original size:13 final size:13
Alignment explanation
Indices: 76154260--76154292 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76154250 AAGGGTTTGT
76154260 TTAT-TAAACTAA
1 TTATCTAAACTAA
76154272 TTATCTAAACTAA
1 TTATCTAAACTAA
*
76154285 TTAACTAA
1 TTATCTAA
76154293 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:76158203 original size:30 final size:29
Alignment explanation
Indices: 76158129--76158256 Score: 193
Period size: 29 Copynumber: 4.4 Consensus size: 29
76158119 TGTGTGTACC
76158129 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
76158158 ATGTGAAAAGGGATAGCTTCGGGTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
76158187 ATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAA-GGGATAGCTTCGGCTATCGA
* ** *
76158217 ATGTGGAAAGGGATAGCTTTTGCTATTGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
76158246 ATGTGAAAAGG
1 ATGTGAAAAGG
76158257 TTAGGTATAC
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
29 63 0.71
30 26 0.29
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:76158248 original size:59 final size:59
Alignment explanation
Indices: 76158129--76158256 Score: 195
Period size: 59 Copynumber: 2.2 Consensus size: 59
76158119 TGTGTGTACC
*
76158129 ATGTGAAAA-GGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCTTCGGGTATCGA
1 ATGTGAAAAGGGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCTTCGGCTATCGA
* * ** *
76158187 ATGTAAAAAGGGGATAGCTTCGGCTATCGAATGTGGAAAGGGATAGCTTTTGCTATTGA
1 ATGTGAAAAGGGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCTTCGGCTATCGA
76158246 ATGTGAAAAGG
1 ATGTGAAAAGG
76158257 TTAGGTATAC
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
58 8 0.13
59 54 0.87
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (59 bp):
ATGTGAAAAGGGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:76158291 original size:33 final size:33
Alignment explanation
Indices: 76158249--76158408 Score: 171
Period size: 33 Copynumber: 4.9 Consensus size: 33
76158239 CTATTGAATG
* *
76158249 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * * *
76158282 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * * * *
76158314 TGAAAAGGCTATGTACACTTTCTGTGTA-CACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * *
76158346 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
*
76158379 TGAAAAGGAAAGGTATACTTTGTGTGTACC
1 TGAAAAGGATAGGTATACTTTGTGTGTACC
76158409 GCTCAGAAAG
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
32 55 0.50
33 56 0.50
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
TGAAAAGGATAGGTATACTTTGTGTGTACCACA
Found at i:76158327 original size:32 final size:32
Alignment explanation
Indices: 76158249--76158407 Score: 167
Period size: 32 Copynumber: 4.9 Consensus size: 32
76158239 CTATTGAATG
* * *
76158249 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGATAGGTATACTTTGTGTGTA-CACT
* * *
76158282 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACACT
* * * *
76158314 TGAAAAGGCTATGTACACTTTCTGTGTACACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACACT
* *
76158346 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGATAGGTATACTTTGTGTGTACAC-T
*
76158378 ATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 -TGAAAAGGATAGGTATACTTTGTGTGTAC
76158408 CGCTCAGAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
31 1 0.01
32 57 0.51
33 53 0.48
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (32 bp):
TGAAAAGGATAGGTATACTTTGTGTGTACACT
Found at i:76158427 original size:97 final size:97
Alignment explanation
Indices: 76158249--76158428 Score: 220
Period size: 97 Copynumber: 1.9 Consensus size: 97
76158239 CTATTGAATG
** ** *
76158249 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
* ** *
76158314 TGAAAAGGCTATGTACACTTTCTGTGTACACT
66 AGAAAAGGAAACGTACACTTTCTGTGTACACT
* * *
76158346 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCGC
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CAC
76158411 TCAG-AAA-GAAACGTACAC
65 T-AGAAAAGGAAACGTACAC
76158429 CTCGAGTGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
97 62 0.90
98 6 0.09
99 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (97 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
AGAAAAGGAAACGTACACTTTCTGTGTACACT
Found at i:76192647 original size:31 final size:31
Alignment explanation
Indices: 76192604--76192672 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
76192594 TTTACCGAGG
76192604 AGAAGTAAGACTGTGTATTGATCAGGCTGCAA
1 AGAA-TAAGACTGTGTATTGATCAGGCTGCAA
76192636 AGAATAAGACTGTGTATTGATCAGGCTGCAA
1 AGAATAAGACTGTGTATTGATCAGGCTGCAA
76192667 AGAATA
1 AGAATA
76192673 TCAATAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (31 bp):
AGAATAAGACTGTGTATTGATCAGGCTGCAA
Found at i:76197782 original size:62 final size:62
Alignment explanation
Indices: 76197685--76197808 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
76197675 GTCCTTACTT
*
76197685 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGTTGATAGGTAGCATCTTGGTAGGAA
1 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
76197747 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
1 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
76197809 AACTTTGCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (62 bp):
TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
Found at i:76201420 original size:16 final size:16
Alignment explanation
Indices: 76201386--76201420 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76201376 GGTTTATAAA
* *
76201386 TTATATTGGATTGGGT
1 TTATATTGGATAGGAT
76201402 TTATATTGGATAGGAT
1 TTATATTGGATAGGAT
76201418 TTA
1 TTA
76201421 GGAGTGCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (16 bp):
TTATATTGGATAGGAT
Found at i:76202485 original size:3 final size:3
Alignment explanation
Indices: 76202479--76202516 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
76202469 AAAAAAAGAA
* *
76202479 GAG GAG GAG GAG AAG GAG GAG GAG GAG GAG GAG AAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
76202517 TAAGAGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:76203189 original size:36 final size:36
Alignment explanation
Indices: 76203149--76203220 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
76203139 GGTCAACGGG
* *
76203149 CAAGATTTAACATTGATACTTAATTGAGCTAATTTT
1 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
76203185 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
1 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
76203221 TAAGTTTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (36 bp):
CAAGATTTAACATTAATACTTAATTGAACTAATTTT
Found at i:76206115 original size:40 final size:40
Alignment explanation
Indices: 76206060--76206269 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76206050 AACATTGGAA
76206060 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76206100 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76206140 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76206180 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76206219 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76206260 CTATATCCGG
1 ATATATCCGG
76206270 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76208217 original size:21 final size:21
Alignment explanation
Indices: 76208191--76208230 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76208181 TATGTTAATT
*
76208191 TTAAAAAATAAATAAAAGGTA
1 TTAAAAAATAAACAAAAGGTA
*
76208212 TTAAAACATAAACAAAAGG
1 TTAAAAAATAAACAAAAGG
76208231 AAAATGCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.20
Consensus pattern (21 bp):
TTAAAAAATAAACAAAAGGTA
Found at i:76209364 original size:77 final size:77
Alignment explanation
Indices: 76209233--76209375 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
76209223 ATTTATTTGA
* * * * *
76209233 TGGCTAAGATCCAACATAAATTGTGAATTCTTGATAGCTTGAGTGAGAAACATCGAATTATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
76209298 TGCGATCCACTG
66 TGCGATCCACTG
* * * * * *
76209310 TGGCTAAGATCTAACATAAGTTGTGGATTCTCGGCAACTTGAGTAAGTAGCATCGAATCATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
76209375 T
66 T
76209376 AGCAATGGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (77 bp):
TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
TGCGATCCACTG
Found at i:76211460 original size:40 final size:40
Alignment explanation
Indices: 76211405--76211614 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76211395 AACATTGGAA
76211405 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76211445 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76211485 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76211525 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76211564 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76211605 CTATATCCGG
1 ATATATCCGG
76211615 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76213563 original size:21 final size:21
Alignment explanation
Indices: 76213537--76213576 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76213527 TATGTTAATT
*
76213537 TTAAAAAATAAATAAAAGGTA
1 TTAAAAAATAAACAAAAGGTA
*
76213558 TTAAAACATAAACAAAAGG
1 TTAAAAAATAAACAAAAGG
76213577 AAAATGCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.20
Consensus pattern (21 bp):
TTAAAAAATAAACAAAAGGTA
Found at i:76214710 original size:77 final size:77
Alignment explanation
Indices: 76214579--76214721 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
76214569 ATTTATTTGA
* * * * *
76214579 TGGCTAAGATCCAACATAAATTGTGAATTCTTGATAGCTTGAGTGAGAAACATCGAATTATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
76214644 TGCGATCCACTG
66 TGCGATCCACTG
* * * * * *
76214656 TGGCTAAGATCTAACATAAGTTGTGGATTCTCGGCAACTTGAGTAAGTAGCATCGAATCATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
76214721 T
66 T
76214722 AGCAATGGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (77 bp):
TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
TGCGATCCACTG
Found at i:76216805 original size:40 final size:40
Alignment explanation
Indices: 76216750--76216959 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76216740 AACATTGGAA
76216750 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76216790 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76216830 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76216870 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76216909 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76216950 CTATATCCGG
1 ATATATCCGG
76216960 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76224936 original size:40 final size:40
Alignment explanation
Indices: 76224881--76225090 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76224871 AACATTGGAA
76224881 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76224921 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76224961 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76225001 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76225040 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76225081 CTATATCCGG
1 ATATATCCGG
76225091 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76227824 original size:45 final size:45
Alignment explanation
Indices: 76227760--76227850 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
76227750 TATTACTAAA
*
76227760 AACGGTTTTCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
1 AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
* *
76227805 AACGGTTTCCATACTAGTGGTCACCGCTGAGCCTCTGTCGGACCG
1 AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
76227850 A
1 A
76227851 CCTCCTATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25
Consensus pattern (45 bp):
AACGGTTTCCATACTAGTGGTCACCGCTGAGACTCTGTCGCACCG
Found at i:76229300 original size:66 final size:68
Alignment explanation
Indices: 76229222--76229408 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
76229212 TAGTACCACT
*
76229222 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
76229284 CACG
65 CACG
76229288 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
76229353 ATCACG
63 ATCACG
76229359 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
76229409 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:76229333 original size:71 final size:71
Alignment explanation
Indices: 76229245--76229408 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76229235 CGATTTGTCT
76229245 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76229310 CTTTCA
66 CTTTCA
76229316 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76229381 CTTTCA
66 CTTTCA
76229387 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76229409 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76229446 original size:71 final size:70
Alignment explanation
Indices: 76229245--76229442 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
76229235 CGATTTGTCT
* * *
76229245 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76229310 CTTTCA
65 CTTTCA
* * *
76229316 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76229381 CTTTCA
65 CTTTCA
* *
76229387 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
76229443 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76236845 original size:66 final size:68
Alignment explanation
Indices: 76236767--76236953 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
76236757 TAGTACCACT
*
76236767 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
76236829 CACG
65 CACG
76236833 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
76236898 ATCACG
63 ATCACG
76236904 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
76236954 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:76236878 original size:71 final size:71
Alignment explanation
Indices: 76236790--76236953 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76236780 CGATTTGTCT
76236790 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76236855 CTTTCA
66 CTTTCA
76236861 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76236926 CTTTCA
66 CTTTCA
76236932 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76236954 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76236991 original size:71 final size:70
Alignment explanation
Indices: 76236790--76236987 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
76236780 CGATTTGTCT
* * *
76236790 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76236855 CTTTCA
65 CTTTCA
* * *
76236861 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76236926 CTTTCA
65 CTTTCA
* *
76236932 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
76236988 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76239408 original size:39 final size:39
Alignment explanation
Indices: 76239365--76239503 Score: 233
Period size: 39 Copynumber: 3.6 Consensus size: 39
76239355 GAATATAAGC
*
76239365 CCGGATATAATTCCAGCTCATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
76239404 CCGGATAAAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
76239443 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* **
76239482 CCAGATATAATTTTAGCACATA
1 CCGGATATAATTCCAGCACATA
76239504 CAGTTATGAT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
Found at i:76251612 original size:3 final size:3
Alignment explanation
Indices: 76251604--76251637 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76251594 CTAAATCCCC
76251604 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
76251638 TTACTTTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:76257739 original size:45 final size:45
Alignment explanation
Indices: 76257667--76257757 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
76257657 CTAAAACATG
* * *
76257667 TGTCACATACATCATGAATTCAGACCACAACTCAATGAGCTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATAAGCTCAGA
* *
76257712 TGTCACATATATCATGAACTCAAACCACAACTCAATAAGTTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATAAGCTCAGA
76257757 T
1 T
76257758 CACATAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAAACCACAACTCAATAAGCTCAGA
Found at i:76259175 original size:44 final size:44
Alignment explanation
Indices: 76259126--76259214 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
76259116 GCCTTTAATG
* *
76259126 ATTACTTCCTCAATTTTCATTCTTATACTCACGTTCATTTCCAT
1 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
76259170 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
1 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
76259214 A
1 A
76259215 CCTTACCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.24, C:0.28, G:0.03, T:0.45
Consensus pattern (44 bp):
ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
Found at i:76262433 original size:17 final size:17
Alignment explanation
Indices: 76262411--76262457 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
76262401 AAATTTTACT
*
76262411 ATGTGGCTCACACGCCC
1 ATGTGGCCCACACGCCC
*
76262428 ATGTGGCCCACACGCCT
1 ATGTGGCCCACACGCCC
**
76262445 ACCTGGCCCACAC
1 ATGTGGCCCACAC
76262458 AGCCTAGAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.45, G:0.21, T:0.15
Consensus pattern (17 bp):
ATGTGGCCCACACGCCC
Found at i:76282734 original size:40 final size:40
Alignment explanation
Indices: 76282682--76282911 Score: 309
Period size: 40 Copynumber: 5.7 Consensus size: 40
76282672 TAACTACTTG
* *
76282682 CAAAGGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* * *
76282722 CAGATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* *
76282762 CAAATGCCTTCGGGTCTTAGCCCGGATATAATCGCTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
*
76282802 CAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCA
* * * *
76282842 CGAATGCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCA
* *
76282883 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGTCTTAGCCCGGATAT
76282912 CATTCGAATA
Statistics
Matches: 165, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.82
41 29 0.18
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
Found at i:76282782 original size:80 final size:80
Alignment explanation
Indices: 76282652--76282911 Score: 321
Period size: 80 Copynumber: 3.3 Consensus size: 80
76282642 CTCAAGTAAT
* * * * * *
76282652 CTTCGGGATTTAG-CCGGATATAACTACTTG--CAAAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
76282714 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* *
76282729 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
76282793 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
76282809 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
76282874 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
76282890 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
76282912 CATTCGAATA
Statistics
Matches: 157, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
77 12 0.08
78 12 0.08
79 2 0.01
80 98 0.62
81 33 0.21
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:76290234 original size:16 final size:16
Alignment explanation
Indices: 76290213--76290247 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
76290203 AAAAATGATC
76290213 ATGATTAACCATTCCA
1 ATGATTAACCATTCCA
76290229 ATGATTAACCATTCCA
1 ATGATTAACCATTCCA
76290245 ATG
1 ATG
76290248 GCTAATCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (16 bp):
ATGATTAACCATTCCA
Found at i:76290964 original size:40 final size:40
Alignment explanation
Indices: 76290892--76291115 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
76290882 CTTGCACAAG
* * *
76290892 GCCTTCGGGTCTTAG-CCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76290931 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76290971 GCCTTCGGGTCTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76291011 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
76291051 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
76291092 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
76291116 CATTCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 17 0.11
40 114 0.71
41 27 0.17
42 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76291013 original size:80 final size:79
Alignment explanation
Indices: 76290865--76291115 Score: 310
Period size: 80 Copynumber: 3.2 Consensus size: 79
76290855 TCTTCACGAT
* * * * *
76290865 TTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCGGATATGGTCACTAGCACA
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGATATAGTCACTAGCACA
*
76290928 GATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * *
76290942 TTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCGCTAGCA
1 TTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAGTCACTAGCA
*
76291006 CAAATGCCTTCGGGTC
64 CAAATGCCTTCGGGAC
* * * *
76291022 TTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCA
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAGTCA-CTAGCA
*
76291087 CAAAAGCCTTCGGGAC
64 CAAATGCCTTCGGGAC
76291103 TTAGCCCGGATAT
1 TTAGCCCGGATAT
76291116 CATTCGAATA
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
77 4 0.03
78 15 0.10
79 19 0.13
80 78 0.52
81 33 0.22
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGATATAGTCACTAGCACA
AATGCCTTCGGGAC
Found at i:76296913 original size:43 final size:43
Alignment explanation
Indices: 76296823--76296938 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
76296813 TGTGATTACA
* * *
76296823 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACACTGGCATCGTATTGAGATTATC
76296866 TGTAAGACCATGTCTGGGACACTGGCATCGTTAATT-A-ATT-TCC
1 TGTAAGACCATGTCTGGGACACTGGCATCG-T-ATTGAGATTAT-C
* * *
76296909 TGTAAGACCCTGTTTGGGACAGTGGCATCG
1 TGTAAGACCATGTCTGGGACACTGGCATCG
76296939 ATATGTGATA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 1 0.02
43 58 0.91
44 2 0.03
45 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACTGGCATCGTATTGAGATTATC
Found at i:76298736 original size:18 final size:18
Alignment explanation
Indices: 76298715--76298769 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
76298705 TCCTGATCGA
76298715 GAAATAACTGACGATGTT
1 GAAATAACTGACGATGTT
* *
76298733 GAAAGTAA-TG-CGCTGCT
1 GAAA-TAACTGACGATGTT
76298750 --AATAACTGACGATGTT
1 GAAATAACTGACGATGTT
76298766 GAAA
1 GAAA
76298770 GTAATGCGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
14 3 0.11
15 4 0.14
16 5 0.18
17 5 0.18
18 8 0.29
19 3 0.11
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (18 bp):
GAAATAACTGACGATGTT
Found at i:76298759 original size:33 final size:33
Alignment explanation
Indices: 76298717--76298779 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
76298707 CTGATCGAGA
76298717 AATAACTGACGATGTTGAAAGTAATGCGCTGCT
1 AATAACTGACGATGTTGAAAGTAATGCGCTGCT
76298750 AATAACTGACGATGTTGAAAGTAATGCGCT
1 AATAACTGACGATGTTGAAAGTAATGCGCT
76298780 TGCTCCCGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (33 bp):
AATAACTGACGATGTTGAAAGTAATGCGCTGCT
Found at i:76306805 original size:38 final size:38
Alignment explanation
Indices: 76306749--76306823 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
76306739 TTTTAATCAG
76306749 TTGGAAGACATTTGGAGCCATTGAAAGCATTGATTTTA
1 TTGGAAGACATTTGGAGCCATTGAAAGCATTGATTTTA
*
76306787 TTGGAAGACATTTTGAGCCATTGAAAGCATTGATTTT
1 TTGGAAGACATTTGGAGCCATTGAAAGCATTGATTTT
76306824 GTGCATTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.36
Consensus pattern (38 bp):
TTGGAAGACATTTGGAGCCATTGAAAGCATTGATTTTA
Found at i:76308712 original size:55 final size:55
Alignment explanation
Indices: 76308628--76308738 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
76308618 CAAAAGAAGA
*
76308628 AAAGTTTTAAAAGCCCCTTAATATAATGTCATGCAGCCGAGCATCTAAGTAGAAT
1 AAAGTTTTAAAAGCCCCTTAATATAATGTCATGCAGCCAAGCATCTAAGTAGAAT
*
76308683 AAAGTTTTAAAAGCCCCTTAATATAATGTCTTGCAGCCAAGCATCTAAGTAGAAT
1 AAAGTTTTAAAAGCCCCTTAATATAATGTCATGCAGCCAAGCATCTAAGTAGAAT
76308738 A
1 A
76308739 TATGAAAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (55 bp):
AAAGTTTTAAAAGCCCCTTAATATAATGTCATGCAGCCAAGCATCTAAGTAGAAT
Found at i:76313526 original size:49 final size:48
Alignment explanation
Indices: 76313449--76313544 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 48
76313439 TTATGCTATG
* * * *
76313449 CATTTCTAAACTTGGTCTTCCACTATCTATACTCTTATTACTATTTATA
1 CATTCCTAAACTTAGTCTTCCACTATCTACACTCTTA-CACTATTTATA
76313498 CATTCCTAAACTTAGTCTTCCACTATCTACACTCTTACACTATTTAT
1 CATTCCTAAACTTAGTCTTCCACTATCTACACTCTTACACTATTTAT
76313545 CCCTTCTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 9 0.21
49 34 0.79
ACGTcount: A:0.27, C:0.26, G:0.03, T:0.44
Consensus pattern (48 bp):
CATTCCTAAACTTAGTCTTCCACTATCTACACTCTTACACTATTTATA
Found at i:76317572 original size:43 final size:42
Alignment explanation
Indices: 76317519--76317605 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 42
76317509 TTCATGTTTC
*
76317519 ATTTTTCATCTCATAATCATTTATCATATTTGCCATTTCAAT
1 ATTTTTCATCTCATAATCATTTATCATATGTGCCATTTCAAT
* * * *
76317561 ATTTTCTCATCTCATATTCATTTCTCATCTGTGCCATTTCCAT
1 ATTTT-TCATCTCATAATCATTTATCATATGTGCCATTTCAAT
76317604 AT
1 AT
76317606 CAATCACATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.24, C:0.23, G:0.03, T:0.49
Consensus pattern (42 bp):
ATTTTTCATCTCATAATCATTTATCATATGTGCCATTTCAAT
Found at i:76318266 original size:19 final size:18
Alignment explanation
Indices: 76318226--76318266 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
76318216 AATACTACAC
*
76318226 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
76318244 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
76318263 ATTT
1 ATTT
76318267 TACTTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:76326927 original size:12 final size:12
Alignment explanation
Indices: 76326910--76326938 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
76326900 CCATACACGC
76326910 CCGTGTGCTAGG
1 CCGTGTGCTAGG
76326922 CCGTGTGCTAGG
1 CCGTGTGCTAGG
76326934 CCGTG
1 CCGTG
76326939 CCAAACCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.41, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:76336028 original size:43 final size:43
Alignment explanation
Indices: 76335970--76336051 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
76335960 ATTTCATTTC
76335970 TCATCTCATAATCATTTCTCATATTT-TTCACTTCAATATTTTT
1 TCATCTCATAATCATTTCTCATATTTGTT-ACTTCAATATTTTT
** * *
76336013 TCATCTCATTTTCATTTCTCATCTTTGTTATTTCAATAT
1 TCATCTCATAATCATTTCTCATATTTGTTACTTCAATAT
76336052 CAATCACATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.23, C:0.21, G:0.01, T:0.55
Consensus pattern (43 bp):
TCATCTCATAATCATTTCTCATATTTGTTACTTCAATATTTTT
Found at i:76337145 original size:5 final size:5
Alignment explanation
Indices: 76337137--76337161 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76337127 AAAATAAAAA
76337137 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
76337162 GGTTGGCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:76340385 original size:22 final size:22
Alignment explanation
Indices: 76340355--76340399 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
76340345 ATTGTATGAT
*
76340355 TTATGAAT-GCATGATAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
76340377 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
76340399 T
1 T
76340400 GAAATGCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:76347044 original size:39 final size:39
Alignment explanation
Indices: 76346978--76347081 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 39
76346968 AAATTGAATG
* * * *
76346978 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAG-ACCGAAGGCAATTATGCTAGAAACT
* * **
76347018 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCGAAGGCAATTATGCTAGAAACT
*
76347057 ACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGA-CCGAAGGCA
76347082 TTCGTGCAAG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 31 0.58
40 22 0.42
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCGAAGGCAATTATGCTAGAAACT
Found at i:76347104 original size:37 final size:38
Alignment explanation
Indices: 76347019--76347126 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 38
76347009 CTGGAAATTA
* *
76347019 TATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAGTGAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGAC
*
76347056 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-TC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGAC
76347095 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
76347127 TGTGGTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
37 32 0.50
39 17 0.27
40 15 0.23
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGAC
Found at i:76355008 original size:40 final size:40
Alignment explanation
Indices: 76354949--76355050 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
76354939 AAATTGAATG
* * *
76354949 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * **
76354989 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
*
76355029 ACATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
76355051 GCATTCGTGC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:76355154 original size:40 final size:40
Alignment explanation
Indices: 76354987--76355156 Score: 216
Period size: 40 Copynumber: 4.2 Consensus size: 40
76354977 ATGCTGGAAA
* * *
76354987 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGA
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGG
* * *
76355027 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* * * *
76355067 TTAAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* *
76355107 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
76355147 TTATATCCGG
1 TTATATCCGG
76355157 TTGTATTCCG
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 3 0.03
40 108 0.97
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
Found at i:76371974 original size:50 final size:49
Alignment explanation
Indices: 76371857--76372122 Score: 199
Period size: 46 Copynumber: 5.6 Consensus size: 49
76371847 TATGATGCCA
*
76371857 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCGA-A-A-C-TGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTG-CTCTC-ACATATCGT-A-GCCG
* *
76371906 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA-CCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GCTCTCACATAT-CGTAGCCG
* *
76371956 ATGCCATGTCCCAAACATGGTCTTACACTGACAC-CTATATAT-GT-GCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTG-CTCTC-ACATATCGTAGCCG
* * * *
76372004 ATGCCATGTCCCAGACATAGTCTTACACTG---ACACATCTCGTAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGCTCTCACATATCGTAGCCG
* * *
76372050 ATG-TATGTCCCAGACAT-GTCTTACACTAGCT-T-ACATCTCG-AGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GCTCTCACATATCGTA-GCCG
*
76372096 ATG-CATGTCCCAAATAT-GTCTTACACT
1 ATGCCATGTCCCAAACATGGTCTTACACT
76372123 AACTCTTGTC
Statistics
Matches: 185, Mismatches: 16, Indels: 35
0.78 0.07 0.15
Matches are distributed among these distances:
44 14 0.08
45 18 0.10
46 43 0.23
48 34 0.18
49 34 0.18
50 39 0.21
52 2 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGCTCTCACATATCGTAGCCG
Found at i:76372087 original size:46 final size:48
Alignment explanation
Indices: 76371902--76372219 Score: 222
Period size: 46 Copynumber: 6.8 Consensus size: 48
76371892 CGAAACTGAG
*
76371902 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATAT-CGTA
* * * *
76371953 -CCGATGCCATGTCCCAAACATGGTCTTACACTGACACCTATATAT-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-A-GCTTACATATCGTA
* *
76372000 GCCGATGCCATGTCCCAGACATAGTCTTACACT-GAC--ACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATATCGTA
* *
76372046 GCCGATG-TATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGTA
* * * * *
76372091 GGCCGATG-CATGTCCCAAATAT-GTCTTACACTAAC-T-CTTGTC-TCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGT--A
* * * * *
76372137 TTCCGGTGCCACGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-ATCGTA
*
76372186 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
76372220 ACACAAATAA
Statistics
Matches: 215, Mismatches: 33, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
44 19 0.09
45 18 0.08
46 64 0.30
47 24 0.11
48 47 0.22
50 38 0.18
51 4 0.02
52 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGTA
Found at i:76376483 original size:50 final size:50
Alignment explanation
Indices: 76376364--76376646 Score: 273
Period size: 50 Copynumber: 5.6 Consensus size: 50
76376354 GTTGTGAGAA
* * * *
76376364 CACATGTGTAGTACTATGTGCAGGCTACTATTTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTA--CGTGT-A-CCAGATTGTTAGGT
*
76376416 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *** * * * *
76376466 CGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * *
76376517 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * * * **
76376567 CATGTGTGTAGTGCTAAGTGCAGGCTACTACATGTATCAGATTAATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
76376617 CACATGTGTAATACTAAGTGTAGGTTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
76376647 TGCGTACCCG
Statistics
Matches: 192, Mismatches: 36, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 118 0.61
51 40 0.21
52 28 0.15
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:76376548 original size:101 final size:101
Alignment explanation
Indices: 76376364--76376596 Score: 313
Period size: 101 Copynumber: 2.3 Consensus size: 101
76376354 GTTGTGAGAA
* ** **** * * *
76376364 CACATGTGTAGTACTATGTGCAGGCTACTATTTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAG-TTTCGATCACGTGTGTAGTA
*
76376429 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
65 CTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
*
76376466 CGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAGTTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAGTTTCGATCACGTGTGTAGTAC
*
76376531 TAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
66 TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
** *
76376567 CATGTGTGTAGTGCTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
76376597 CATGTATCAG
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
101 79 0.69
102 35 0.31
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAGTTTCGATCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:76376646 original size:151 final size:153
Alignment explanation
Indices: 76376364--76376685 Score: 414
Period size: 151 Copynumber: 2.1 Consensus size: 153
76376354 GTTGTGAGAA
* ** * *
76376364 CACATGTGTAGTACTATGTGCAGGCTACTATTTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACAGTGTTAGGTCACGTGTGTAGTA
* ** * *
76376429 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
66 CTAAGTGCAGGCTACTACATGTACCAGATTAATAGGTCACATGTGTAATACTAAGTGCAGGCTAC
**
76376494 TATACGTACCCGATAGTTTCGAT
131 TATACGTACCCGATAACTTCGAT
* * * * *
76376517 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TG-GTTAGGTCATGTGTGTAGTG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACAGTGTTAGGTCACGTGTGTAGTA
* * *
76376580 CTAAGTGCAGGCTACTACATGTATCAGATTAATAGGTCACATGTGTAATACTAAGTGTAGGTTAC
66 CTAAGTGCAGGCTACTACATGTACCAGATTAATAGGTCACATGTGTAATACTAAGTGCAGGCTAC
* *
76376645 TATGCGTACCCGTTAACTTCGAT
131 TATACGTACCCGATAACTTCGAT
* *
76376668 CACATGTGTGGTAATAAG
1 CACATGTGTAGTACTAAG
76376686 AAAGTTTTGA
Statistics
Matches: 144, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
151 108 0.75
152 1 0.01
153 35 0.24
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (153 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACAGTGTTAGGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTACATGTACCAGATTAATAGGTCACATGTGTAATACTAAGTGCAGGCTAC
TATACGTACCCGATAACTTCGAT
Found at i:76383988 original size:14 final size:14
Alignment explanation
Indices: 76383969--76384006 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
76383959 CACATGTGTA
76383969 GTACTATGTGCAGG
1 GTACTATGTGCAGG
76383983 GTACTATGTGCAGG
1 GTACTATGTGCAGG
76383997 GTACTATGTG
1 GTACTATGTG
76384007 TTTAAGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.34, T:0.32
Consensus pattern (14 bp):
GTACTATGTGCAGG
Found at i:76384083 original size:50 final size:50
Alignment explanation
Indices: 76384019--76384416 Score: 406
Period size: 50 Copynumber: 7.9 Consensus size: 50
76384009 TAAGATAGTT
*
76384019 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
76384069 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG
* * * * *
76384119 TTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
76384170 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * ** * * *
76384220 ATAGGTCGCATGTGTAGTACTAAGTTTAGGCTACTATGTGTACC-CATTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * * * * *
76384271 TTCGATCACGTGTGTAGTACTAACTGCAGTCTACTA-GTGTATCAGGTGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
76384320 ATAAGTCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAAATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
76384370 ATAGGTCACTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
76384417 GAGCTTCAGT
Statistics
Matches: 278, Mismatches: 63, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
49 31 0.11
50 178 0.64
51 69 0.25
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:76384167 original size:101 final size:99
Alignment explanation
Indices: 76384024--76384413 Score: 381
Period size: 101 Copynumber: 3.9 Consensus size: 99
76384014 TAGTTTTAGG
* * *
76384024 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTAC
*
76384089 TAAGTGCAGGCTACTATGCGTACCCAATTGTTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCAATTG-AT-GA
* * * *
76384125 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTAC
* * * ** *
76384190 TAAGTGTAGGCTACTACGTGTACCGGATTGATAGG
66 TAAGTGCAGGCTACTATGCGTACCCAATTGAT-GA
* * ** * * * * *
76384225 TCGCATGTGTAGTACTAAGTTTAGGCTACTATGTGTACC-CATTAACTTCGATCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACGTGTGTAGT
* * * * * * *
76384289 ACTAACTGCAGTCTACTA-GTGTA-TCAGGTGGATAA
64 ACTAAGTGCAGGCTACTATGCGTACCCA-ATTGATGA
* * * * *
76384324 GTCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAAATTGATAGGTCACTTGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTA
76384389 CTAAGTGCAGGCTACTATGCGTACC
65 CTAAGTGCAGGCTACTATGCGTACC
76384414 AGAGAGCTTC
Statistics
Matches: 228, Mismatches: 54, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
99 32 0.14
100 80 0.35
101 116 0.51
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCAATTGATGA
Found at i:76384293 original size:151 final size:150
Alignment explanation
Indices: 76384019--76384413 Score: 585
Period size: 151 Copynumber: 2.6 Consensus size: 150
76384009 TAAGATAGTT
*
76384019 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
** *
76384084 AGTACTAAGTGCAGGCTACTATGCGTACCCAATTGTTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATTACTTCGATCACGTGTGTAGTACTAACTGCAG
76384149 GCTACTACATGTATCAGATGG
131 GCTACTA-ATGTATCAGATGG
* *
76384170 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
** *
76384235 AGTACTAAGTTTAGGCTACTATGTGTACCC-ATTAACTTCGATCACGTGTGTAGTACTAACTGCA
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATT-ACTTCGATCACGTGTGTAGTACTAACTGCA
* * *
76384299 GTCTACTAGTGTATCAGGTGG
130 GGCTACTAATGTATCAGATGG
* * ** * * * *
76384320 ATAAGTCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAAATTGATAGGTCACTTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
76384385 AGTACTAAGTGCAGGCTACTATGCGTACC
66 AGTACTAAGTGCAGGCTACTATGCGTACC
76384414 AGAGAGCTTC
Statistics
Matches: 218, Mismatches: 25, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
150 95 0.44
151 123 0.56
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (150 bp):
TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCAATTACTTCGATCACGTGTGTAGTACTAACTGCAG
GCTACTAATGTATCAGATGG
Found at i:76390523 original size:99 final size:97
Alignment explanation
Indices: 76390355--76390535 Score: 258
Period size: 99 Copynumber: 1.8 Consensus size: 97
76390345 TGATGTTGAT
* * *
76390355 GCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGTAGATGCCATGTCCTAGACATGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTAGATGCCATGTCCCAGACATGG
76390420 TCTTACACTGAC-TATCGAAATCGAGGCCGAC
66 TCTTACACTGACATATCGAAATCGAGGCCGAC
** *
76390451 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCTGTGTCGATGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--ATC-AAGTAGATGCCATGTCCCAGAC
76390515 ATGGTCTTACACTGACATATC
62 ATGGTCTTACACTGACATATC
76390536 TCGTAGTCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
95 2 0.03
96 31 0.42
98 3 0.04
99 34 0.46
100 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTAGATGCCATGTCCCAGACATGG
TCTTACACTGACATATCGAAATCGAGGCCGAC
Found at i:76390555 original size:45 final size:45
Alignment explanation
Indices: 76390353--76390572 Score: 146
Period size: 50 Copynumber: 4.7 Consensus size: 45
76390343 TATGATGTTG
* * **
76390353 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATC-AAGT-A
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCACAT--ATCTGTGTCA
* * * * *
76390399 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATC-GAGGCCG
1 -ATGCCATGTCCCAGACATGGTCTTACACTG-C-A-C-ATATCTG-TGTCA
* *
76390449 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G----CACATATCTGTGTCA
76390499 ATGCCATGTCCCAGACATGGTCTTACACTG-ACATATCTCGTAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGCACATATCT-GT-GTCA
*
76390545 ATG-CATGTCCCAAACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
76390573 GCTTACATCT
Statistics
Matches: 143, Mismatches: 17, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
44 19 0.13
45 15 0.10
46 7 0.05
47 28 0.20
48 3 0.02
49 30 0.21
50 37 0.26
51 2 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCACATATCTGTGTCA
Found at i:76390608 original size:46 final size:50
Alignment explanation
Indices: 76390352--76390617 Score: 192
Period size: 46 Copynumber: 5.6 Consensus size: 50
76390342 GTATGATGTT
* * * **
76390352 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCATC-CATC---AAGTA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCACATCTTGAGGCC
* *
76390399 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATC--GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATC-ACATCTTGAGGCC
* * * * *
76390448 GACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTG-TGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACATCT-TGAGGCC
* *
76390498 GATGCCATGTCCCAGACATGGTCTTACACTGAC-AT---ATCTCGTA-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTG-AGGCC
* * *
76390544 AATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-ACATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTGAGGCC
*
76390590 GATG-CATGTCCTAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
76390618 AGCTCTCGTC
Statistics
Matches: 179, Mismatches: 26, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
44 13 0.07
45 15 0.08
46 44 0.25
47 31 0.17
48 7 0.04
49 35 0.20
50 32 0.18
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTGAGGCC
Found at i:76390637 original size:46 final size:46
Alignment explanation
Indices: 76390443--76390667 Score: 147
Period size: 46 Copynumber: 4.8 Consensus size: 46
76390433 ATCGAAATCG
* *
76390443 AGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATC-
1 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-ACATCTCA
* * * *
76390492 TGTGTCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ATATCTCGT
1 AG-GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTC-A
* * * * **
76390540 A-GTCAATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTTG
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCA
* *
76390585 AGGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCA
* * **
76390631 ATGCCGATGCCGTGTCCCAGATTTGTCTTACACTAGC
1 AGGCCGATG-CATGTCCCAGACATGTCTTACACTAGC
76390668 ACACAAATAA
Statistics
Matches: 142, Mismatches: 24, Indels: 22
0.76 0.13 0.12
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 58 0.41
47 24 0.17
49 2 0.01
50 32 0.23
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCA
Found at i:76393166 original size:40 final size:40
Alignment explanation
Indices: 76393122--76393249 Score: 186
Period size: 40 Copynumber: 3.1 Consensus size: 40
76393112 TTAAGTCCAG
*
76393122 ATATAGTACCAACACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAACACTAAGCCTGCGGGATTTAACCCGG--AT
* *
76393164 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAACACTAAGCCTGCGGGATTTAACCCGGAT
*
76393204 ATATATTACCAACA-TGAAGCCTGCGGGATTTAACTCGGAT
1 ATATATTACCAACACT-AAGCCTGCGGGATTTAACCCGGAT
76393244 ATATAT
1 ATATAT
76393250 ATTATATCGA
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 44 0.56
42 35 0.44
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (40 bp):
ATATATTACCAACACTAAGCCTGCGGGATTTAACCCGGAT
Found at i:76393184 original size:42 final size:42
Alignment explanation
Indices: 76393122--76393253 Score: 196
Period size: 42 Copynumber: 3.2 Consensus size: 42
76393112 TTAAGTCCAG
* *
76393122 ATATAGTACCAACACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAACACAAAGCCTGCGGGATTTAACCCGGATAT
*
76393164 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAACACAAAGCCTGCGGGATTTAACCCGGATAT
** *
76393204 ATATATTACCAACATGAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAACACAAAGCCTGCGGGATTTAACCCGGATAT
76393246 ATATATTA
1 ATATATTA
76393254 TATCGAGAGT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 36 0.44
42 45 0.56
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
ATATATTACCAACACAAAGCCTGCGGGATTTAACCCGGATAT
Found at i:76400791 original size:40 final size:39
Alignment explanation
Indices: 76400744--76400892 Score: 176
Period size: 40 Copynumber: 3.7 Consensus size: 39
76400734 TACTAGCTCA
* * * *
76400744 AAGCCTGCGGAACTTTAAGTCCGG-ATATAGTACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGAATATAATACCAGCACG
76400784 AAGCCTGCGGGATTTAACCCGGATATATATATACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGA-ATATA-ATACCAGCACG
* *
76400825 AAGCCTGC-GGATTTAACCTGGATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGA-ATATAATACCAGCACG
76400864 AAGCCTGCGGGATTTAACCCGGATATATA
1 AAGCCTGCGGGATTTAACCCGGA-ATATA
76400893 TATTATATCG
Statistics
Matches: 98, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
38 4 0.04
39 23 0.23
40 54 0.55
41 17 0.17
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGATTTAACCCGGAATATAATACCAGCACG
Found at i:76400893 original size:40 final size:40
Alignment explanation
Indices: 76400768--76400893 Score: 209
Period size: 40 Copynumber: 3.1 Consensus size: 40
76400758 TTAAGTCCGG
* *
76400768 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
76400808 ATATATATACCAGCACGAAGCCTGC-GGATTTAACCTGGAT
1 ATATAT-TACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
76400848 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
76400888 ATATAT
1 ATATAT
76400894 ATTATATCGA
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
39 18 0.22
40 45 0.56
41 17 0.21
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:76408087 original size:30 final size:30
Alignment explanation
Indices: 76408051--76408151 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
76408041 GACAAGATTG
* * *
76408051 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76408081 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76408109 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
76408138 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76408152 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:76408163 original size:29 final size:28
Alignment explanation
Indices: 76408080--76408155 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
76408070 AAAATTGTAC
* *
76408080 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
76408108 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
76408137 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
76408156 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:76421184 original size:53 final size:53
Alignment explanation
Indices: 76421112--76421368 Score: 264
Period size: 53 Copynumber: 4.8 Consensus size: 53
76421102 TTAATTTTTT
* * *
76421112 ATATGATGTCATAACCCACCAATTACAGTCTTACACAATATAGTCTTCTTTCC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* * * **
76421165 ATATGATGTCATAACCCACCAATTACGGTCTTACACAATATGGTCTTCTTTTA
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* * * * * ** * *
76421218 ATATAATGCCATAACCCATCAGTTATAGTATTAAATGATATGGTTTTTTTTCC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* ** * *
76421271 ATTTGATGCCATAACCCACCAGTTAC-GATCTTACATGATATGGCCTTTTTTCC
1 ATATGATGCCATAACCCACCAGTTACAG-TCTTACACAATATGGTCTTCTTTCC
* * * *
76421324 ATATGATGCCATAACCTACCAGTTATATTCTTAGACAATATGGTC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTC
76421369 CTTAAGTGCC
Statistics
Matches: 168, Mismatches: 34, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
52 1 0.01
53 167 0.99
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (53 bp):
ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
Found at i:76421365 original size:106 final size:106
Alignment explanation
Indices: 76421107--76421368 Score: 292
Period size: 106 Copynumber: 2.5 Consensus size: 106
76421097 CTTTCTTAAT
* * * * * *
76421107 TTTTTATATGATGTCATAACCCACCAATTACAGTCTTACACAATATAGTCTTCTTTCCATATGAT
1 TTTTAATATGATGCCATAACCCACCAGTTATAGTCTTAAACAATATGGTCTTCTTTCCATATGAT
* * *
76421172 GTCATAACCCACCAATTACGGTCTTACACAATATGGTCTTC
66 GCCATAACCCACCAATTACGATCTTACACAATATGGCCTTC
* * * ** * * *
76421213 TTTTAATATAATGCCATAACCCATCAGTTATAGTATTAAATGATATGGTTTTTTTTCCATTTGAT
1 TTTTAATATGATGCCATAACCCACCAGTTATAGTCTTAAACAATATGGTCTTCTTTCCATATGAT
* **
76421278 GCCATAACCCACCAGTTACGATCTTACATGATATGGCCTT-
66 GCCATAACCCACCAATTACGATCTTACACAATATGGCCTTC
* * * *
76421318 TTTTCCATATGATGCCATAACCTACCAGTTATATTCTTAGACAATATGGTC
1 TTTT-AATATGATGCCATAACCCACCAGTTATAGTCTTAAACAATATGGTC
76421369 CTTAAGTGCC
Statistics
Matches: 125, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
105 4 0.03
106 121 0.97
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (106 bp):
TTTTAATATGATGCCATAACCCACCAGTTATAGTCTTAAACAATATGGTCTTCTTTCCATATGAT
GCCATAACCCACCAATTACGATCTTACACAATATGGCCTTC
Found at i:76424214 original size:19 final size:20
Alignment explanation
Indices: 76424177--76424219 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
76424167 ATAATGAGCG
76424177 TATATAACATATCATTCATT
1 TATATAACATATCATTCATT
76424197 TATATACATTCATATCATTCATT
1 TATATA-A--CATATCATTCATT
76424220 GTCATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 1 0.05
23 13 0.65
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (20 bp):
TATATAACATATCATTCATT
Found at i:76424465 original size:43 final size:44
Alignment explanation
Indices: 76424394--76424611 Score: 207
Period size: 43 Copynumber: 5.1 Consensus size: 44
76424384 TAAGCTCGTA
* *
76424394 CGATGCCAAC-GTCCTAGACGTGGTCTTACATGTAATCAAATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * * *
76424437 CGATGCC-ACTGTCCCAAACAGGGCCTTACATGAAACCAAATA-
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * *
76424479 CGATGCCGA-TGTCCCAGACATGGTCTTACACGTAAATCTCAAT-T
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGT-AATC-AAATAT
* * * *
76424523 TGATGCCAAC-ATCCCAGACATGGTGTTACACGTAATCAAATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * *
76424566 CGATGCC-ACTGTCCCAGACAAGGTCGTACATGAAATCACATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
76424609 CGA
1 CGA
76424612 AATCCTATAC
Statistics
Matches: 140, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
42 33 0.24
43 76 0.54
44 31 0.22
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (44 bp):
CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
Found at i:76426076 original size:29 final size:28
Alignment explanation
Indices: 76426027--76426154 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 28
76426017 TTATTGAAAC
76426027 AAGGCTTCC-ATTAACAGAGATAGCCATA
1 AAGGCTTCCTATTAACAGAGATAGCCA-A
* * *
76426055 AAGGCTTCCTTTTAACAAAGATCG-CAA
1 AAGGCTTCCTATTAACAGAGATAGCCAA
*
76426082 AAGGCTT-CTATTAATAGAGATAGCCACA
1 AAGGCTTCCTATTAACAGAGATAGCCA-A
* *
76426110 AAGGCTTCCTTTTAACAGAGCTCA-CCACA
1 AAGGCTTCCTATTAACAGAGAT-AGCCA-A
76426139 AAGGCTTCC-ATTAACA
1 AAGGCTTCCTATTAACA
76426155 TTGATAGCTA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
26 12 0.14
27 10 0.12
28 25 0.30
29 36 0.43
30 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (28 bp):
AAGGCTTCCTATTAACAGAGATAGCCAA
Found at i:76426086 original size:55 final size:57
Alignment explanation
Indices: 76426027--76426177 Score: 189
Period size: 55 Copynumber: 2.7 Consensus size: 57
76426017 TTATTGAAAC
* *
76426027 AAGGCTTCCATTAACAGAGATAGCCATAAAGGCTTCCTTTTAACAAAGATC-GCA-A
1 AAGGCTTCCATTAACAGAGATAGCCAAAAAGGCTTCCTTTTAACAAAGATCACCACA
* * * * *
76426082 AAGGCTTCTATTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGCTCACCACA
1 AAGGCTTCCATTAACAGAGATAGCCAAAAAGGCTTCCTTTTAACAAAGATCACCACA
** * *
76426139 AAGGCTTCCATTAACATTGATAGCTAAAAAGGATTCCTT
1 AAGGCTTCCATTAACAGAGATAGCCAAAAAGGCTTCCTT
76426178 AGATTACGCC
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
55 46 0.57
56 2 0.02
57 33 0.41
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (57 bp):
AAGGCTTCCATTAACAGAGATAGCCAAAAAGGCTTCCTTTTAACAAAGATCACCACA
Found at i:76429666 original size:27 final size:27
Alignment explanation
Indices: 76429636--76430083 Score: 382
Period size: 27 Copynumber: 16.6 Consensus size: 27
76429626 ATAAAGTGAT
* * *
76429636 ATTACTAAAATATCCTCAATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* * *
76429663 ATTA-TCGAAATACCCCCGATTTATGAA
1 ATTACT-GAAATACCCTCGATTTGTAAA
*
76429690 ATTACTGAAACACCCTCGATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* *
76429717 ATTA-TCGAAACAACCC-CGATTTATAAA
1 ATTACT-GAAA-TACCCTCGATTTGTAAA
** *
76429744 ATTACCAAAATACCCTCGA-TTGTGAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* *
76429770 ATTATTGAAATACCC-CTAATTTGTAAA
1 ATTACTGAAATACCCTC-GATTTGTAAA
76429797 ATTA-TCGAAATACCCTCGATTATG--AA
1 ATTACT-GAAATACCCTCGATT-TGTAAA
* *
76429823 ATTACTAAAATACCCTCAATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* * *
76429850 ATTA-TCGAAATACCCCCGATTTATGAA
1 ATTACT-GAAATACCCTCGATTTGTAAA
* *
76429877 ATTACTGAAACACCTTCGATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* * * *
76429904 ATTACCGAAACATCCTTGATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
*
76429931 ATTACTGAAATACCCTTGATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* *
76429958 ATTA-TCGAAATATCCTCTATTTGTATAAA
1 ATTACT-GAAATACCCTCGATTTG--TAAA
*
76429987 ATTACTGAAATACCCTTGATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* * *
76430014 ATTACTGAAACACCCCCAATTTGTAAA
1 ATTACTGAAATACCCTCGATTTGTAAA
* *
76430041 ATTA-TCGAAATACCCTTG-TAGTGTAAA
1 ATTACT-GAAATACCCTCGAT-TTGTAAA
76430068 ATTA-TCGAAATACCCT
1 ATTACT-GAAATACCCT
76430084 TGTAGTGTAA
Statistics
Matches: 342, Mismatches: 57, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
25 3 0.01
26 48 0.14
27 259 0.76
28 9 0.03
29 22 0.06
30 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTACTGAAATACCCTCGATTTGTAAA
Found at i:76430093 original size:137 final size:134
Alignment explanation
Indices: 76429657--76430096 Score: 415
Period size: 137 Copynumber: 3.3 Consensus size: 134
76429647 ATCCTCAATT
** * * *
76429657 TGTAAAATTATCGAAATACCCCCGATT-TATGAAATTACTGAAACACCCTCGATTTGTAAAATTA
1 TGTAAAATTATCGAAATACCCTTGATTGTA--AAATTACTAAAATACCCTCAATTTGTAAAATTA
* * ** * * * * ** *
76429721 TCGAAACAACCCCGATTTATAAAATTACCAAAATACCCTCGA-TTGTGAAATTATTGAAATACCC
64 TCGAAATACCCCCGATTTATAAAATTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCC
* * *
76429785 CTAATT
129 TTGATG
* * *
76429791 TGTAAAATTATCGAAATACCCTCGATTATGAAATTACTAAAATACCCTCAATTTGTAAAATTATC
1 TGTAAAATTATCGAAATACCCTTGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTATC
* ** * *
76429856 GAAATACCCCCGATTTATGAAATTACTGAAACACCTTCGATTTGTAAAATTACCGAAACATCCTT
66 GAAATACCCCCGATTTATAAAATTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCCTT
*
76429921 GATT
131 GATG
* * *
76429925 TGTAAAATTA-CTGAAATACCCTTGATTTGTAAAATTA-TCGAAATATCCTCTATTTGTATAAAA
1 TGTAAAATTATC-GAAATACCCTTGA-TTGTAAAATTACT-AAAATACCCTCAATTTG--TAAAA
** * * *
76429988 TTA-CTGAAATACCCTTGATTTGTAAAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAAT
61 TTATC-GAAATACCCCCGATTTATAAAATTACTGAAACACCCCCAATTTGTAAAATTACCGAAAC
76430052 ACCCTTG-TAG
125 ACCCTTGAT-G
*
76430062 TGTAAAATTATCGAAATACCCTTGTAGTGTAAAAT
1 TGTAAAATTATCGAAATACCCTTG-ATTGTAAAAT
76430097 GACCAACATA
Statistics
Matches: 258, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
133 66 0.26
134 70 0.27
135 24 0.09
136 2 0.01
137 94 0.36
138 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (134 bp):
TGTAAAATTATCGAAATACCCTTGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTATC
GAAATACCCCCGATTTATAAAATTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCCTT
GATG
Found at i:76430107 original size:27 final size:26
Alignment explanation
Indices: 76430048--76430126 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
76430038 AAAATTATCG
* *
76430048 AAATACCCTTGTAGTGTAAAATTATCG
1 AAATACCCTTGTAGTGTAAAATGA-CC
76430075 AAATACCCTTGTAGTGTAAAATGACC
1 AAATACCCTTGTAGTGTAAAATGACC
* * *
76430101 AACATACCCCTATAGGGTAAAATGAC
1 AA-ATACCCTTGTAGTGTAAAATGAC
76430127 TGTTTTGCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (26 bp):
AAATACCCTTGTAGTGTAAAATGACC
Found at i:76431977 original size:28 final size:28
Alignment explanation
Indices: 76431937--76432018 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
76431927 AAGTCTACAT
*
76431937 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* *
76431965 ACATTTATATGGCCCACTAGGCCTAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
*
76431993 ACATTCATATAGCCCA-TCAGGCCCAA
1 ACATTCATATGGCCCACT-AGGCCCAA
76432019 CTACTTCCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 46 0.98
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:76435758 original size:48 final size:48
Alignment explanation
Indices: 76435706--76435938 Score: 196
Period size: 48 Copynumber: 4.9 Consensus size: 48
76435696 TAGGGATATG
* *
76435706 TGTGATCTCATGTAAGACCATGTCTGGGAAATGGCATTGGCAT-ATAAA
1 TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-ATA
* * *
76435754 TGTGATCCCATGTAAGACCATGCCTGGGACATAGCATTGGCATCAATA
1 TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
76435802 TGAGA-CATCGTGTAAGACCATAG-CTAGG-CTATTG-ATT----TCGATA
1 TGTGATC-TCATGTAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCAATA
* * *
76435845 TGCATGATCCCATATAAGACCATGTTTGGGACATGGCATTGGCATCAATA
1 TG--TGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * *
76435895 TGTGATATCATGTAAGACCATATCTGGGATATGGCATGGGCATC
1 TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
76435939 CTACTATGTG
Statistics
Matches: 145, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
43 7 0.05
44 1 0.01
45 19 0.13
46 5 0.03
47 5 0.03
48 99 0.68
49 2 0.01
50 7 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (48 bp):
TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:76439910 original size:30 final size:30
Alignment explanation
Indices: 76439874--76440033 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
76439864 GACAAGATTG
* * * * *
76439874 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
76439904 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
76439932 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
76439961 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
76439991 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
76440020 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76440034 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Done.