Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 249 of 425
Found at i:76440002 original size:59 final size:57
Alignment explanation
Indices: 76439874--76440033 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
76439864 GACAAGATTG
* * * * * *
76439874 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
76439932 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
76439991 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
76440034 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:76443604 original size:29 final size:30
Alignment explanation
Indices: 76443512--76443663 Score: 150
Period size: 29 Copynumber: 5.1 Consensus size: 30
76443502 CAAGACATTT
* * *
76443512 ATTTAACTGAGA-TAGCCACAAAGACATCC
1 ATTTAACAGAGATTAGCCACAAAGGCTTCC
* * *
76443541 TTTTAACATAGATT-GCCACAATGGCTTCC
1 ATTTAACAGAGATTAGCCACAAAGGCTTCC
* *
76443570 -TATAACAGAGATTAGCCACAAAGACTTCC
1 ATTTAACAGAGATTAGCCACAAAGGCTTCC
* * *
76443599 -TTTAACATAGATTATTCTCAAAAAAGGCTTCC
1 ATTTAACAGAGATTA-GC-C-ACAAAGGCTTCC
76443631 ATTTAACAGAGATTAGCCACAAAGGCTTCC
1 ATTTAACAGAGATTAGCCACAAAGGCTTCC
76443661 ATT
1 ATT
76443664 GCAGACTCAT
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
28 11 0.11
29 46 0.46
30 16 0.16
31 2 0.02
32 11 0.11
33 13 0.13
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (30 bp):
ATTTAACAGAGATTAGCCACAAAGGCTTCC
Found at i:76443652 original size:62 final size:59
Alignment explanation
Indices: 76443512--76443660 Score: 178
Period size: 62 Copynumber: 2.5 Consensus size: 59
76443502 CAAGACATTT
* * * *
76443512 ATTTAACTGAGA-TAGCCACAAAGACATCCTTTTAACATAGATTGCCACAATGGCTTCC
1 ATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGATTGCCAAAAAGGCTTCC
* *
76443570 -TATAACAGAGATTAGCCACAAAGACTTCC-TTTAACATAGATTATTCTCAAAAAAGGCTTCC
1 ATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGA-T-TGC-C-AAAAAGGCTTCC
*
76443631 ATTTAACAGAGATTAGCCACAAAGGCTTCC
1 ATTTAACAGAGATTAGCCACAAAGACTTCC
76443661 ATTGCAGACT
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
57 20 0.26
58 17 0.22
59 2 0.03
60 1 0.01
61 10 0.13
62 27 0.35
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (59 bp):
ATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGATTGCCAAAAAGGCTTCC
Found at i:76446638 original size:30 final size:29
Alignment explanation
Indices: 76446544--76446645 Score: 100
Period size: 28 Copynumber: 3.5 Consensus size: 29
76446534 TATAGTGAAT
* * *
76446544 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* * *
76446573 TCGCACATTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
76446601 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
76446631 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76446646 CAATCTTGTC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
28 22 0.37
29 17 0.29
30 20 0.34
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:76453763 original size:30 final size:29
Alignment explanation
Indices: 76453669--76453770 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
76453659 TATAGTGAAT
* * *
76453669 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
76453698 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
76453726 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
76453756 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76453771 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:76464820 original size:21 final size:21
Alignment explanation
Indices: 76464796--76464836 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
76464786 CACTATGCAA
*
76464796 CCATAGGATGTCACAACACAG
1 CCATAGGATATCACAACACAG
76464817 CCATAGGATATCACAACACA
1 CCATAGGATATCACAACACA
76464837 CCCCTGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.29, G:0.15, T:0.15
Consensus pattern (21 bp):
CCATAGGATATCACAACACAG
Found at i:76466144 original size:28 final size:28
Alignment explanation
Indices: 76466112--76466167 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
76466102 CAAAGGAGAA
76466112 GAAAACATGTTTAGTCAATCATTGATCC
1 GAAAACATGTTTAGTCAATCATTGATCC
76466140 GAAAACATGTTTAGTCAATCATTGATCC
1 GAAAACATGTTTAGTCAATCATTGATCC
76466168 ATACAGGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (28 bp):
GAAAACATGTTTAGTCAATCATTGATCC
Found at i:76470311 original size:23 final size:23
Alignment explanation
Indices: 76470267--76470332 Score: 105
Period size: 23 Copynumber: 2.8 Consensus size: 23
76470257 CTTCCTATAT
*
76470267 GGAGAAATAAGGAAGGTGAGAGAA
1 GGAGAAATAAGG-TGGTGAGAGAA
76470291 GGAGAAATAAGGTGGTGAGAGAA
1 GGAGAAATAAGGTGGTGAGAGAA
*
76470314 GGAGAAAGAAGGTGGTGAG
1 GGAGAAATAAGGTGGTGAG
76470333 CGAGTAAGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 28 0.70
24 12 0.30
ACGTcount: A:0.44, C:0.00, G:0.45, T:0.11
Consensus pattern (23 bp):
GGAGAAATAAGGTGGTGAGAGAA
Found at i:76471957 original size:33 final size:35
Alignment explanation
Indices: 76471897--76471965 Score: 97
Period size: 33 Copynumber: 2.0 Consensus size: 35
76471887 GCGAATACAT
*
76471897 TCTGGGCCTAAGCCCATATCAGTAACAGTAA-CAG
1 TCTGGGCCTAAGCCCATATCAGCAACAGTAATCAG
* *
76471931 TCTGGGCCTTA-CCCATTTCAGCAACAGTAATCAG
1 TCTGGGCCTAAGCCCATATCAGCAACAGTAATCAG
76471965 T
1 T
76471966 GCAATAACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 17 0.55
34 14 0.45
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (35 bp):
TCTGGGCCTAAGCCCATATCAGCAACAGTAATCAG
Found at i:76472618 original size:18 final size:18
Alignment explanation
Indices: 76472578--76472619 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
76472568 CCATAATGCG
*
76472578 AGCCCATGTGGGCCCACA
1 AGCCCAGGTGGGCCCACA
*
76472596 TGCCCAGGT-GGCCCACGA
1 AGCCCAGGTGGGCCCAC-A
76472614 AGCCCA
1 AGCCCA
76472620 AAAATGGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.21, C:0.40, G:0.29, T:0.10
Consensus pattern (18 bp):
AGCCCAGGTGGGCCCACA
Found at i:76473831 original size:24 final size:24
Alignment explanation
Indices: 76473804--76473850 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76473794 AATTTTCTCC
*
76473804 TAAAATCTCTCCT-CATATCCCTCT
1 TAAAATCCCTCCTACA-ATCCCTCT
*
76473828 TAAACTCCCTCCTACAATCCCTC
1 TAAAATCCCTCCTACAATCCCTC
76473851 CATGACTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.26, C:0.43, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAAATCCCTCCTACAATCCCTCT
Found at i:76474854 original size:30 final size:30
Alignment explanation
Indices: 76474818--76474877 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
76474808 ATTCCGAGCC
*
76474818 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
76474848 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
76474878 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:76482378 original size:14 final size:14
Alignment explanation
Indices: 76482359--76482388 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76482349 TTCCCGAGCC
*
76482359 TAGGGGCAAAAGTG
1 TAGGGGCAAAAATG
76482373 TAGGGGCAAAAATG
1 TAGGGGCAAAAATG
76482387 TA
1 TA
76482389 ATTTTGCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.37, T:0.17
Consensus pattern (14 bp):
TAGGGGCAAAAATG
Found at i:76487186 original size:39 final size:39
Alignment explanation
Indices: 76487026--76487214 Score: 301
Period size: 38 Copynumber: 4.9 Consensus size: 39
76487016 TATGGTAACC
* * * *
76487026 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
76487066 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
76487104 CGCACAATTACCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
76487142 CGCACAATTACCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
76487181 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
76487215 CTCGAACATT
Statistics
Matches: 142, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 73 0.51
39 52 0.37
40 17 0.12
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:76490318 original size:38 final size:39
Alignment explanation
Indices: 76490269--76490381 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 39
76490259 ATATCACGAT
76490269 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-A-CAAC
1 TTGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGCAAC
*
76490307 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 TTGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGCAAC
* *
76490347 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 TTGCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
76490382 ATTTCCAGCA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
38 32 0.47
39 3 0.04
40 33 0.49
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
TTGCACAATGCCTTCGGGTCTTAGCCCGGATATAGCAAC
Found at i:76490376 original size:40 final size:38
Alignment explanation
Indices: 76490245--76490381 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 38
76490235 CCAAGGCCAA
* * * *
76490245 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATAT-ACAACTAGCAC-AATGCCTT
*
76490284 CGGGTCTTAGCCCGGATA-ACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATACAACTAGCAC-AATGCCTT
*
76490322 CGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATA-CAACTAGCACAA-TGCCTT
*
76490362 CGGGTCTTAACCCGGATATA
1 CGGGTCTTAGCCCGGATATA
76490382 ATTTCCAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 35 0.40
39 11 0.13
40 41 0.47
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (38 bp):
CGGGTCTTAGCCCGGATATACAACTAGCACAATGCCTT
Found at i:76490397 original size:40 final size:40
Alignment explanation
Indices: 76490271--76490420 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
76490261 ATCACGATTT
* *
76490271 GCACAAATGCCTTCGGGTCTTAGCCCGGATAACAACTT---
1 GCACAATTGCCTTCGGGTCTTAGCCCGGAT-ATAACTTCCA
* ** *
76490309 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTTCCA
* *
76490349 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTTCCA
* * *
76490389 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
76490421 CATTCAATTT
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
37 3 0.03
38 27 0.29
39 4 0.04
40 59 0.63
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTTCCA
Found at i:76501296 original size:38 final size:35
Alignment explanation
Indices: 76501237--76501354 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
76501227 TCAATCATGC
*
76501237 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
76501276 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
76501307 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
76501338 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76501355 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:76501298 original size:31 final size:31
Alignment explanation
Indices: 76501260--76501354 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
76501250 CCTTTTCATA
*
76501260 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
76501291 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
76501322 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
76501353 TT
1 TT
76501355 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:76501597 original size:24 final size:24
Alignment explanation
Indices: 76501546--76501687 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
76501536 GCTTTATCAT
*
76501546 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
76501571 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
76501595 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
76501618 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
76501641 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
76501665 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76501688 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 16 0.15
23 12 0.11
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76501634 original size:46 final size:48
Alignment explanation
Indices: 76501546--76501686 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 48
76501536 GCTTTATCAT
* *
76501546 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
76501595 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
76501641 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
76501687 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 37 0.44
47 12 0.14
48 24 0.28
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:76501763 original size:20 final size:20
Alignment explanation
Indices: 76501738--76501797 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
76501728 TATGATTACC
76501738 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
76501758 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
76501778 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
76501798 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:76501768 original size:11 final size:11
Alignment explanation
Indices: 76501738--76501792 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
76501728 TATGATTACC
76501738 TCATGTGCATA
1 TCATGTGCATA
*
76501749 TCA--TACATA
1 TCATGTGCATA
76501758 TCATGTGCATA
1 TCATGTGCATA
* *
76501769 TCA--TACATT
1 TCATGTGCATA
76501778 TCATGTGCATA
1 TCATGTGCATA
76501789 TCAT
1 TCAT
76501793 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:76501872 original size:25 final size:25
Alignment explanation
Indices: 76501840--76501887 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76501830 ATACATAAAC
* * *
76501840 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76501865 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76501888 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76506394 original size:2 final size:2
Alignment explanation
Indices: 76506387--76506418 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
76506377 AAGTTCTTAC
76506387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76506419 ATTGTCATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76510076 original size:28 final size:28
Alignment explanation
Indices: 76510040--76510102 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
76510030 TAAAAATATG
*
76510040 TTTTAGATTGACATGTTTTAAATTTGAGC
1 TTTT-GATTGACATATTTTAAATTTGAGC
*
76510069 TTTTGATTGACATATTTTGAATTTGAGC
1 TTTTGATTGACATATTTTAAATTTGAGC
76510097 TTTTGA
1 TTTTGA
76510103 AGATTTTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.51
Consensus pattern (28 bp):
TTTTGATTGACATATTTTAAATTTGAGC
Found at i:76511953 original size:40 final size:40
Alignment explanation
Indices: 76511878--76512124 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
76511868 TCTTCAAAAT
* ** *
76511878 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
76511917 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
76511957 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
76511997 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
76512036 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
76512076 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
76512116 TTAGCCCGG
1 TTAGCCCGG
76512125 GTATCATTCA
Statistics
Matches: 188, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 40 0.21
40 147 0.78
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:76512025 original size:79 final size:79
Alignment explanation
Indices: 76511878--76512124 Score: 372
Period size: 79 Copynumber: 3.1 Consensus size: 79
76511868 TCTTCAAAAT
* ** *
76511878 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCC-GGTATAGCAACTCGCAC
76511942 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
76511957 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
76512022 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
* * *
76512036 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCA
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGG-TAT-AGCAACTCGCA
* *
76512100 TAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGTC
76512116 TTAGCCCGG
1 TTAGCCCGG
76512125 GTATCATTCA
Statistics
Matches: 156, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
79 84 0.54
80 70 0.45
81 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:76512109 original size:119 final size:119
Alignment explanation
Indices: 76511898--76512124 Score: 366
Period size: 119 Copynumber: 1.9 Consensus size: 119
76511888 ATAACCACAA
* * *
76511898 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
76511963 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTC
66 CGGATATAACAACTAGCACAAATGCCTTCGGGACTTAACCCGGTATAGCAACTC
*
76512017 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
76512082 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
66 CGGATATAA-CAACTAGCACAAATGCCTTCGGGACTTAACCCGG
76512125 GTATCATTCA
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
119 98 0.99
120 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATAACAACTAGCACAAATGCCTTCGGGACTTAACCCGGTATAGCAACTC
Found at i:76514444 original size:35 final size:35
Alignment explanation
Indices: 76514405--76514610 Score: 205
Period size: 35 Copynumber: 5.9 Consensus size: 35
76514395 AGGTAAGTAT
* *
76514405 ATGTGAGGTTATATTGAACTTGTATATTTGGCTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
76514440 ATGTGAGGTTATATTGAACTTGTGTATTTGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
** *
76514475 ATGTGAACTTATATTGAACTTGTATATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * ** *
76514510 ATGTGAGATTATATTGAATTTGTATATTCGGCCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * * * * *
76514545 ATGAGATGTTTTATTAAACTTGAACATTAGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
76514580 ATGTGATGATATATTGAACTTATATATTCGG
1 ATGTGAGGTTATATTGAACTTGTATATTCGG
76514611 CCATATGAAA
Statistics
Matches: 137, Mismatches: 34, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 137 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:76514565 original size:105 final size:105
Alignment explanation
Indices: 76514405--76514609 Score: 248
Period size: 105 Copynumber: 2.0 Consensus size: 105
76514395 AGGTAAGTAT
* * * * * *** *
76514405 ATGTGAGGTTATATTGAACTTGTATATTTGGCTACATGTGAGGTTATATTGAACTTGTGTATTTG
1 ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
* *
76514470 ATTACATGTGAACTTATATTGAACTTGTATATTCGATTAC
66 ATTACATGTGAACATATATTGAACTTATATATTCGATTAC
* * * *
76514510 ATGTGAGATTATATTGAATTTGTATATTCGGCCATATGAGATGTTTTATTAAACTTGAACATTAG
1 ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
* **
76514575 GTTACATGTGATGATATATTGAACTTATATATTCG
66 ATTACATGTGAACATATATTGAACTTATATATTCG
76514610 GCCATATGAA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
105 82 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (105 bp):
ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
ATTACATGTGAACATATATTGAACTTATATATTCGATTAC
Found at i:76522248 original size:35 final size:35
Alignment explanation
Indices: 76522208--76522342 Score: 171
Period size: 35 Copynumber: 3.9 Consensus size: 35
76522198 AGGTAAGTAT
* * *
76522208 ATGTGAGGTTATATTGAACTTGTATATTTGGCTGC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
76522243 ATGTGAGGTTATATTGAACTTGTGTACTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
76522278 ATGTGAGCTTATATTGAGCTTGTATATTCAGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* *
76522313 ATGTGAGATTATATTGAATTTGTATATTCG
1 ATGTGAGGTTATATTGAACTTGTATATTCG
76522343 ACCATATGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:76526921 original size:6 final size:6
Alignment explanation
Indices: 76526910--76526941 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
76526900 TAGTTATGAT
*
76526910 TTTTTA TTTTTA TTTTTA TTTCTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
76526942 ATCTTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:76530433 original size:27 final size:27
Alignment explanation
Indices: 76530403--76530546 Score: 154
Period size: 27 Copynumber: 5.4 Consensus size: 27
76530393 CCCCGAAGTA
* *
76530403 GATAAAAT-AGCCGTAATGCCCCTATAG
1 GATAAAATGA-CCGTAATGCCTCTGTAG
76530430 GATAAAATGACCGTAATGCCTCTGTAG
1 GATAAAATGACCGTAATGCCTCTGTAG
*
76530457 GGTAAAATGACCGTAATGCCTCTGTAG
1 GATAAAATGACCGTAATGCCTCTGTAG
* **
76530484 GGTAAAACAACCGTAATGTCCTC-GTAG
1 GATAAAATGACCGTAATG-CCTCTGTAG
* *
76530511 GAT-AAATGACCG-AATACCCCTGTATG
1 GATAAAATGACCGTAATGCCTCTGTA-G
76530537 G-TAAAATGAC
1 GATAAAATGAC
76530547 GATTATGCCC
Statistics
Matches: 102, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
24 3 0.03
25 7 0.07
26 16 0.16
27 71 0.70
28 5 0.05
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
GATAAAATGACCGTAATGCCTCTGTAG
Found at i:76530490 original size:54 final size:54
Alignment explanation
Indices: 76530403--76530546 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
76530393 CCCCGAAGTA
* *
76530403 GATAAAAT-AGCCGTAATGCCCCTATAGGATAAAATGACCGTAATG-CCTCTGTAG
1 GATAAAATGA-CCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGTCCTC-GTAG
* * **
76530457 GGTAAAATGACCGTAATGCCTCTGTAGGGTAAAACAACCGTAATGTCCTCGTAG
1 GATAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGTCCTCGTAG
* *
76530511 GAT-AAATGACCG-AATACCCCTGTATGGTAAAATGAC
1 GATAAAATGACCGTAATGCCCCTGTAGGGTAAAATGAC
76530547 GATTATGCCC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 19 0.25
53 9 0.12
54 43 0.57
55 5 0.07
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (54 bp):
GATAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGTCCTCGTAG
Found at i:76533742 original size:50 final size:50
Alignment explanation
Indices: 76533668--76533855 Score: 243
Period size: 50 Copynumber: 3.8 Consensus size: 50
76533658 CTTCGATCCT
* * * *
76533668 GTGTGTAGTACTAAGTGCATGCTACTATGTGTATCAGATGGTTAGGTCAC
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* * * *
76533718 GTGTGTGGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* * * *
76533768 GTGTGTAGTACTAAGTACAGACTACTACGTGTACCGGATTGTT-GGTCGC
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* *
76533817 ATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAGAT
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAT
76533856 AGCTTTGGTG
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
49 40 0.33
50 82 0.67
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
Found at i:76533855 original size:99 final size:100
Alignment explanation
Indices: 76533668--76533855 Score: 245
Period size: 99 Copynumber: 1.9 Consensus size: 100
76533658 CTTCGATCCT
* * * * * *
76533668 GTGTGTAGTACTAAGTGCATGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTGGTATTAAG
1 GTGTGTAGTACTAAGTACATGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAG
* *
76533733 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
66 TACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* * *
76533768 GTGTGTAGTACTAAGTACA-GACTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACTAA
1 GTGTGTAGTACTAAGTACATG-CTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAA
*
76533831 GTACAGGCTACTATGTGTACCAGAT
65 GTACAGGCTACTACGTGTACCAGAT
76533856 AGCTTTGGTG
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
99 39 0.52
100 36 0.48
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.32
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTACATGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAG
TACAGGCTACTACGTGTACCAGATGGTTAGGTCAC
Found at i:76536876 original size:33 final size:33
Alignment explanation
Indices: 76536838--76536904 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
76536828 TTCAGTGATA
76536838 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
1 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
76536871 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
1 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
76536904 G
1 G
76536905 GGTTGATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (33 bp):
GAATGGTTATAAGCATGATTAGTGATTGAGAAT
Found at i:76540199 original size:50 final size:50
Alignment explanation
Indices: 76540088--76540403 Score: 323
Period size: 50 Copynumber: 6.3 Consensus size: 50
76540078 TGAGAACACA
* * ** * * *
76540088 TGTGTAGTTCTATGTGCAGGCTACTATATGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG--TTAGGTCACG
* * *
76540140 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * * * * * * *
76540190 TGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGACAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TAGTTAGGTCACG
* *
76540241 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* *
76540291 TGTGTAGTACTAAATGCAAGCTACTACGTGTATCAGATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * ** *
76540341 TGTGTAGT-CTAAGTGTAGGCTACTACGTGTATCGGATTTTTAGTTGCA--
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT-CACG
76540389 TGTGTAGTACTAAGT
1 TGTGTAGTACTAAGT
76540404 ATACGCTACT
Statistics
Matches: 217, Mismatches: 44, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
48 8 0.04
49 36 0.17
50 103 0.47
51 38 0.18
52 32 0.15
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
Found at i:76540262 original size:101 final size:100
Alignment explanation
Indices: 76540130--76540425 Score: 362
Period size: 101 Copynumber: 3.0 Consensus size: 100
76540120 TAAGATGGTT
* * *
76540130 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGT
* *
76540195 AGTACTAAGTGCATGCTACTATGCGTACCCGACAAC
66 AGTACTAAGTGCAAGCTACTATGCGTACCAGA-AAC
* * * *
76540231 TTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCACGTGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGT
* * * * * *
76540296 AGTACTAAATGCAAGCTACTACGTGTATCAGATAG
66 AGTACTAAGTGCAAGCTACTATGCGTACCAGAAAC
* * * * *
76540331 TTAGGTCACGTGTGTAGT-CTAAGTGTAGGCTACTACGTGTATCGGATTTTTA-GTTGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGT
** *
76540394 AGTACTAAGTATACGCTACTATGCGTACCAGA
66 AGTACTAAGTGCAAGCTACTATGCGTACCAGA
76540426 TAGCTTCGAT
Statistics
Matches: 164, Mismatches: 31, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
98 33 0.20
99 31 0.19
100 16 0.10
101 84 0.51
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGT
AGTACTAAGTGCAAGCTACTATGCGTACCAGAAAC
Found at i:76541841 original size:45 final size:45
Alignment explanation
Indices: 76541790--76541880 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
76541780 TAATGAGATG
76541790 ACAAGGTCAAATGAATGTGTAATAATGTGGCTAGACTAGTTTATC
1 ACAAGGTCAAATGAATGTGTAATAATGTGGCTAGACTAGTTTATC
76541835 ACAAGGTCAAATGAATGTGTAATAATGTGGCTAGACTAGTTTATC
1 ACAAGGTCAAATGAATGTGTAATAATGTGGCTAGACTAGTTTATC
76541880 A
1 A
76541881 TGAATAGGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (45 bp):
ACAAGGTCAAATGAATGTGTAATAATGTGGCTAGACTAGTTTATC
Found at i:76542259 original size:30 final size:32
Alignment explanation
Indices: 76542199--76542270 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
76542189 CAAGCCGCAC
*
76542199 GGGCGTGTGTGACCATAGGATTCAACACACAT
1 GGGCGTGTGTGACCACAGGATTCAACACACAT
76542231 GGGCGTGTGTGACCACAGGATTCAACACACAT
1 GGGCGTGTGTGACCACAGGATTCAACACACAT
76542263 GGGCGTGT
1 GGGCGTGT
76542271 AACTCTCCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (32 bp):
GGGCGTGTGTGACCACAGGATTCAACACACAT
Found at i:76544975 original size:15 final size:15
Alignment explanation
Indices: 76544935--76544987 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
76544925 TTCATATTCA
*
76544935 ATTATTTGATTTCTT
1 ATTATTTTATTTCTT
*
76544950 ATTTTCATTTATTTACTT
1 ATTAT--TTTATTT-CTT
76544968 -TTATTTTATTTCTT
1 ATTATTTTATTTCTT
76544982 ATTATT
1 ATTATT
76544988 ATAATTTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 3 0.10
15 16 0.52
17 9 0.29
18 3 0.10
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.70
Consensus pattern (15 bp):
ATTATTTTATTTCTT
Found at i:76547720 original size:23 final size:23
Alignment explanation
Indices: 76547671--76547720 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
76547661 ATATGTTTTG
* * *
76547671 TAAAGCTTTTGTGGTATATCTGG
1 TAAAGCTTGTGTGGCATATCTGA
76547694 TAAAGCTTGTGTGGCATAT-TGTA
1 TAAAGCTTGTGTGGCATATCTG-A
76547717 TAAA
1 TAAA
76547721 ACCTTTGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (23 bp):
TAAAGCTTGTGTGGCATATCTGA
Found at i:76549485 original size:23 final size:23
Alignment explanation
Indices: 76549413--76549499 Score: 86
Period size: 23 Copynumber: 3.8 Consensus size: 23
76549403 ACACGTAATG
* *
76549413 TTCTCTAAAGTCTTTGAGGCATA
1 TTCTGTAAAGTCTTTGTGGCATA
* * * *
76549436 TTCAGTAAAG-CATGTGTTGTATA
1 TTCTGTAAAGTC-TTTGTGGCATA
*
76549459 TTCTGTAAAGTCTTTGTGGCATG
1 TTCTGTAAAGTCTTTGTGGCATA
*
76549482 TTCTGTAAAGCCTTTGTG
1 TTCTGTAAAGTCTTTGTG
76549500 ACGTATCTTG
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
22 1 0.02
23 48 0.96
24 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (23 bp):
TTCTGTAAAGTCTTTGTGGCATA
Found at i:76551252 original size:16 final size:16
Alignment explanation
Indices: 76551231--76551263 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76551221 GTATATGCTA
76551231 GAAATTAGAAATTTAT
1 GAAATTAGAAATTTAT
76551247 GAAATTAGAAATTTAT
1 GAAATTAGAAATTTAT
76551263 G
1 G
76551264 GTAGAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (16 bp):
GAAATTAGAAATTTAT
Found at i:76551386 original size:20 final size:20
Alignment explanation
Indices: 76551342--76551379 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76551332 AGATACTAAA
* *
76551342 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
76551362 ATGAAAAATTCTAAAATT
1 ATGAAAAATTCTAAAATT
76551380 CTATGAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:76552015 original size:58 final size:57
Alignment explanation
Indices: 76551925--76552073 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 57
76551915 CCATTGACCT
* * * * * * *
76551925 TGTTATAGAAAGGATTTAGCCCGAACGGGTAATCCTGATATA-ATACCTCTTGAACATA
1 TGTTATATAAGGGATTTAGCCTGGACTGGTAATCCTAATAGAGAT-CCTC-TGAACATA
* * * * *
76551983 TGTTATGATTAGGG-TTTAGCCTGGATTGGTAATCCTAATCGAGCTCCTCTGAACTTA
1 TGTTAT-ATAAGGGATTTAGCCTGGACTGGTAATCCTAATAGAGATCCTCTGAACATA
76552040 TGTTATATAAGGGATTTAGCCTGGACTGGTAATC
1 TGTTATATAAGGGATTTAGCCTGGACTGGTAATC
76552074 ATATTACATG
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
56 6 0.08
57 32 0.43
58 31 0.42
59 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (57 bp):
TGTTATATAAGGGATTTAGCCTGGACTGGTAATCCTAATAGAGATCCTCTGAACATA
Found at i:76557256 original size:38 final size:38
Alignment explanation
Indices: 76557205--76557280 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
76557195 GAAATAAGAA
76557205 AGAATTACCATGGACTTGGTAACGGGATTACCCCTGTC
1 AGAATTACCATGGACTTGGTAACGGGATTACCCCTGTC
76557243 AGAATTACCATGGACTTGGTAACGGGATTACCCCTGTC
1 AGAATTACCATGGACTTGGTAACGGGATTACCCCTGTC
76557281 TCCAAAGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (38 bp):
AGAATTACCATGGACTTGGTAACGGGATTACCCCTGTC
Found at i:76561585 original size:23 final size:23
Alignment explanation
Indices: 76561555--76561638 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
76561545 ACACATAATG
76561555 TTCTGTAAAGCCTTTGTGGCATA
1 TTCTGTAAAGCCTTTGTGGCATA
*
76561578 TT-TGGTAAAGCCTATGTGGCATA
1 TTCT-GTAAAGCCTTTGTGGCATA
** *
76561601 TTCTGTAAAGCCTTTGTGGTGTG
1 TTCTGTAAAGCCTTTGTGGCATA
*
76561624 TTCTATAAAGCCTTT
1 TTCTGTAAAGCCTTT
76561639 ATGATGTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
22 1 0.02
23 51 0.96
24 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (23 bp):
TTCTGTAAAGCCTTTGTGGCATA
Found at i:76564054 original size:20 final size:20
Alignment explanation
Indices: 76564029--76564073 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
76564019 TCTCTCGAAC
76564029 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
76564049 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
76564069 TCGGA
1 TCGGA
76564074 TGCTCAACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:76571517 original size:40 final size:40
Alignment explanation
Indices: 76571462--76571671 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76571452 AACATTGGAA
76571462 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76571502 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76571542 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76571582 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76571621 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76571662 CTATATCCGG
1 ATATATCCGG
76571672 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76579652 original size:40 final size:40
Alignment explanation
Indices: 76579597--76579806 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76579587 AACATTGGAA
76579597 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76579637 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76579677 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76579717 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76579756 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76579797 CTATATCCGG
1 ATATATCCGG
76579807 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76592823 original size:9 final size:9
Alignment explanation
Indices: 76592809--76592833 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
76592799 GATCAAGTAA
76592809 AATTAAATT
1 AATTAAATT
76592818 AATTAAATT
1 AATTAAATT
76592827 AATTAAA
1 AATTAAA
76592834 ATAAATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTAAATT
Found at i:76593321 original size:68 final size:64
Alignment explanation
Indices: 76593237--76593432 Score: 231
Period size: 68 Copynumber: 3.0 Consensus size: 64
76593227 TATTAAATTT
* *
76593237 AATAGATTTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTATATTAATTTAATATTAA
1 AATAAATTTAATATTAAATTTAATTTAATATTTATCTT-ATAGTATTATATTAATTTAATATTAA
* *
76593302 AATAATTATCTTAATATTAAATTTAATTTAATATTTATCTTATAG-ATAAATATT-TTATTAAT-
1 AATAA--AT-TTAATATTAAATTTAATTTAATATTTATCTTATAGTAT-TATATTAAT-TTAATA
76593364 TT--
61 TTAA
* *
76593366 AATAAATTTCATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATATTA
1 AATAAATTTAATATTAAATTTAATTTAATATTTATCTT-AT-AGTATTATATTAATTTAATATTA
76593431 A
64 A
76593432 A
1 A
76593433 GTGATTAAGT
Statistics
Matches: 111, Mismatches: 8, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
61 29 0.26
62 4 0.04
63 12 0.11
64 10 0.09
65 4 0.04
66 6 0.05
67 16 0.14
68 30 0.27
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50
Consensus pattern (64 bp):
AATAAATTTAATATTAAATTTAATTTAATATTTATCTTATAGTATTATATTAATTTAATATTAA
Found at i:76593440 original size:58 final size:60
Alignment explanation
Indices: 76593314--76593432 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 60
76593304 TAATTATCTT
* * *
76593314 AATATTAAATTTAATTTAATATTTATCTTATAGATAAATATTTTATTAATTTAATAAATTT
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAAT-AATTA
* *
76593375 CATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATAATTA
76593431 AA
1 AA
76593433 GTGATTAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
56 4 0.08
58 21 0.40
59 1 0.02
60 1 0.02
61 25 0.48
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATAATTA
Found at i:76598768 original size:26 final size:26
Alignment explanation
Indices: 76598732--76598783 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
76598722 TGAAAAAAAA
*
76598732 GCGCCGCTAAAAGTCGTGGCCTTTAG
1 GCGCCGCTAAAAGTCATGGCCTTTAG
*
76598758 GCGCCGTTAAAAGTCATGGCCTTTAG
1 GCGCCGCTAAAAGTCATGGCCTTTAG
76598784 CGGCGTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (26 bp):
GCGCCGCTAAAAGTCATGGCCTTTAG
Found at i:76598825 original size:69 final size:69
Alignment explanation
Indices: 76598689--76598826 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
76598679 TTAAAAAAAA
* **
76598689 GCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAAAAAAAGCGCCGCTAAAAGTCGTGGCCT
1 GCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAAAAAAAGCGCCGCTAAAAGTCACGGCCT
76598754 TTAG
66 TTAG
* ** *
76598758 GCGCCGTTAAAAGTCATGGCCTTTAGCGGCGTTTGGGAAAAAAGCGCCGCTAAAAGTCACGGTCT
1 GCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAAAAAAAGCGCCGCTAAAAGTCACGGCCT
76598823 TTAG
66 TTAG
76598827 CGGCGTTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (69 bp):
GCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAAAAAAAGCGCCGCTAAAAGTCACGGCCT
TTAG
Found at i:76599252 original size:24 final size:21
Alignment explanation
Indices: 76599206--76599246 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
76599196 TTCCTATGCT
76599206 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
*
76599227 CTGCCTCCCTCTCTGCTGCC
1 CTGCCTCCCTCGCTGCTGCC
76599247 TCCGCTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.54, G:0.20, T:0.27
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCG
Found at i:76599683 original size:13 final size:14
Alignment explanation
Indices: 76599658--76599686 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76599648 TGATGAATTG
76599658 AATTAAACAATTAT
1 AATTAAACAATTAT
76599672 AATTAAAC-ATTAT
1 AATTAAACAATTAT
76599685 AA
1 AA
76599687 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:76599890 original size:16 final size:17
Alignment explanation
Indices: 76599853--76599891 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
76599843 AAAATATTAT
*
76599853 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
76599870 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
76599886 TTAATA
1 TTAATA
76599892 AAATTTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:76604871 original size:9 final size:9
Alignment explanation
Indices: 76604857--76605046 Score: 91
Period size: 9 Copynumber: 20.6 Consensus size: 9
76604847 TATTTAAGTA
76604857 TTATGTAAG
1 TTATGTAAG
76604866 TTATGTAAG
1 TTATGTAAG
*
76604875 TTATGATATG
1 TTATG-TAAG
* * *
76604885 ATATAT-AT
1 TTATGTAAG
*
76604893 TTATGTAAA
1 TTATGTAAG
* *
76604902 TTATAT-AT
1 TTATGTAAG
*
76604910 TTATCTAAG
1 TTATGTAAG
* *
76604919 TTATATAAA
1 TTATGTAAG
76604928 TTATGTAAG
1 TTATGTAAG
*
76604937 TTATGTAAA
1 TTATGTAAG
*
76604946 TTATGATATAAAA
1 TTATG---T-AAG
*
76604959 TATATTTAAG
1 T-TATGTAAG
76604969 TATTATGTAAG
1 --TTATGTAAG
76604980 TTATGTAAG
1 TTATGTAAG
* *
76604989 TTATAT-AT
1 TTATGTAAG
*
76604997 TTATCTAAG
1 TTATGTAAG
*
76605006 TTATATAAG
1 TTATGTAAG
*
76605015 TTATGTACG
1 TTATGTAAG
76605024 TT-TGGTAAG
1 TTAT-GTAAG
* *
76605033 TTATATAAA
1 TTATGTAAG
76605042 TTATG
1 TTATG
76605047 ATATCAAATA
Statistics
Matches: 137, Mismatches: 31, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
8 17 0.12
9 94 0.69
10 9 0.07
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:76604882 original size:43 final size:40
Alignment explanation
Indices: 76604844--76604996 Score: 130
Period size: 34 Copynumber: 4.0 Consensus size: 40
76604834 ATGATATGAT
76604844 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGA
1 ATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-A
* * * *
76604886 TATATATTTATGTAAATTATAT-ATTTATCTAAGTTATATA-A
1 -ATATATTTAAGT--ATTATGTAAGTTATGTAAGTTATATATA
* *
76604927 AT-TATGTAAG--TTATGTAAATTATG--A--TATA-A-A
1 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATA
76604958 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATAT
1 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATAT
76604997 TTATCTAAGT
Statistics
Matches: 87, Mismatches: 11, Indels: 27
0.70 0.09 0.22
Matches are distributed among these distances:
31 4 0.05
32 11 0.13
34 14 0.16
35 5 0.06
36 6 0.07
38 4 0.05
39 7 0.08
40 2 0.02
41 1 0.01
43 14 0.16
44 13 0.15
45 6 0.07
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.47
Consensus pattern (40 bp):
ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATA
Found at i:76604938 original size:71 final size:69
Alignment explanation
Indices: 76604856--76605019 Score: 204
Period size: 71 Copynumber: 2.3 Consensus size: 69
76604846 ATATTTAAGT
* * * *
76604856 ATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGT
1 ATTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGT
76604920 TATATAA
64 TATAT-A
* * *
76604927 ATTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTA
1 ATTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTA
76604992 TATA
66 TATA
* * *
76604996 TTTATCTAAGTTATATAAGTTATG
1 ATTATGTAAGTTATGTAAGTTATG
76605020 TACGTTTGGT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
69 27 0.33
70 15 0.19
71 39 0.48
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (69 bp):
ATTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTA
TATA
Found at i:76604941 original size:44 final size:44
Alignment explanation
Indices: 76604893--76605039 Score: 153
Period size: 44 Copynumber: 3.4 Consensus size: 44
76604883 TGATATATAT
76604893 TTATGTAAATTATATATTTATCTAAGTTATATAAATTATGTAAG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAATTATGTAAG
* *
76604937 TTATGTAAATTATGATA--TA---AAATATATTTAAGTATTATGTAAG
1 TTATGTAAATTAT-ATATTTATCTAAGT-TATATAA--ATTATGTAAG
* * *
76604980 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAATTATGTAAG
*
76605024 TT-TGGTAAGTTATATA
1 TTAT-GTAAATTATATA
76605040 AATTATGATA
Statistics
Matches: 86, Mismatches: 7, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
40 3 0.03
41 6 0.07
42 3 0.03
43 25 0.29
44 37 0.43
45 3 0.03
46 6 0.07
47 3 0.03
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (44 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAATTATGTAAG
Found at i:76604995 original size:87 final size:91
Alignment explanation
Indices: 76604893--76605077 Score: 261
Period size: 96 Copynumber: 2.0 Consensus size: 91
76604883 TGATATATAT
*
76604893 TTATGTAAATTATATATTTATCTAAGTTATATAA-AT-TA-T-GTAAGTTATGTAAATTATGATA
1 TTATGTAAATTATATATTTATCTAAGTTATATAATATGTATTGGTAAGTTATATAAATTATGATA
76604954 TAAAATATATTTAAGTATTATGTAAG
66 TAAAATATATTTAAGTATTATGTAAG
*
76604980 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTGGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAA--TATGTA---TTGGTAAGTTATATAAATTA
* *
76605045 TGATATCAAATATATTTATGTATTATGTAAG
61 TGATATAAAATATATTTAAGTATTATGTAAG
76605076 TT
1 TT
76605078 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 33 0.39
90 2 0.02
91 2 0.02
95 1 0.01
96 47 0.55
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (91 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAATATGTATTGGTAAGTTATATAAATTATGATA
TAAAATATATTTAAGTATTATGTAAG
Found at i:76605033 original size:114 final size:114
Alignment explanation
Indices: 76604833--76605046 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
76604823 ACTAGTTATG
* * * *
76604833 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
76604898 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
66 TAAATTATATATTTAGCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
76604947 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
76605010 ATAAGTTATGTACGTTT-GGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTAGCTAAGTTATATAAATTATG
76605047 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTAGCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:76605171 original size:15 final size:15
Alignment explanation
Indices: 76605151--76605206 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
76605141 AAGTAGCGGG
76605151 ATTAAATAATATTTA
1 ATTAAATAATATTTA
76605166 ATTAAATAATATTT-
1 ATTAAATAATATTTA
76605180 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
76605195 ATTAAGTAATAT
1 ATTAAATAATAT
76605207 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:76606062 original size:274 final size:275
Alignment explanation
Indices: 76605416--76606092 Score: 1311
Period size: 274 Copynumber: 2.5 Consensus size: 275
76605406 ATAAAACGGA
76605416 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
76605481 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAGTATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
*
76605546 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGATTATAATAATATAAAAAAAGAATC
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATC
76605611 GTAGTTTAATTTTTATAAGTACATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
196 GTAGTTTAATTTTTATAAGTACATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
76605676 TTTTCAAGTCTTTTT
261 TTTTCAAGTCTTTTT
76605691 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
76605756 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
76605821 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAAAGAATC
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATC
76605885 GTAGTTTAATTTTTATAAGTACATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
196 GTAGTTTAATTTTTATAAGTACATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
76605950 TTTTCAAGTCTTTTT
261 TTTTCAAGTCTTTTT
*
76605965 GAATTTTTTAATATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
76606030 CTCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
76606093 ATAAGGTTGG
Statistics
Matches: 398, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
274 217 0.55
275 181 0.45
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (275 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATC
GTAGTTTAATTTTTATAAGTACATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
TTTTCAAGTCTTTTT
Found at i:76606883 original size:183 final size:183
Alignment explanation
Indices: 76606573--76606940 Score: 682
Period size: 183 Copynumber: 2.0 Consensus size: 183
76606563 CCTAGAACAG
76606573 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
76606638 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTAAACCAATAGCTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTAAACCAATAGCTGCAGGAGG
*
76606703 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
76606756 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
76606821 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTAAACCAATAGCTGCAGGAGG
* *
76606886 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
76606939 AT
1 AT
76606941 AGAACTATAT
Statistics
Matches: 179, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTAAACCAATAGCTGCAGGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:76607031 original size:14 final size:13
Alignment explanation
Indices: 76607012--76607041 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
76607002 CAATATAATT
76607012 TTACTTCATATATA
1 TTACTTCATATA-A
76607026 TTACTTCATATAA
1 TTACTTCATATAA
76607039 TTA
1 TTA
76607042 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:76609817 original size:29 final size:28
Alignment explanation
Indices: 76609783--76609885 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
76609773 TACTCAATCA
*
76609783 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* ** * *
76609812 CGCACACATAGTGTTATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
76609841 CGCACACTTAGTGCCGTAAATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
76609870 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
76609886 ATCTCGTCAC
Statistics
Matches: 57, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
28 2 0.04
29 55 0.96
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:76609868 original size:58 final size:57
Alignment explanation
Indices: 76609755--76609876 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 57
76609745 GTGTAGAGTT
* *
76609755 CGCACACATAGTGCTTAATACTCAATCACGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACATAGTGCTTAATACTCAAACACGCACACTTAGTGCCATATAATTCAAGCC
* * * *
76609812 CGCACACATAGTG-TTATATAGTCCAAACTCGCACACTTAGTGCCGTA-AATTACAAGCT
1 CGCACACATAGTGCTTA-ATACT-CAAACACGCACACTTAGTGCCATATAATT-CAAGCC
76609870 CGCACAC
1 CGCACAC
76609877 TCAGTGCCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
56 3 0.05
57 20 0.36
58 33 0.59
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.24
Consensus pattern (57 bp):
CGCACACATAGTGCTTAATACTCAAACACGCACACTTAGTGCCATATAATTCAAGCC
Found at i:76617820 original size:29 final size:28
Alignment explanation
Indices: 76617786--76617888 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
76617776 TACTCAATCA
*
76617786 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
76617815 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
76617844 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
76617873 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
76617889 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:76621058 original size:29 final size:29
Alignment explanation
Indices: 76621024--76621128 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
76621014 TACTCGATTT
* * *
76621024 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
76621053 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
76621082 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
76621111 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76621129 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76621116 original size:58 final size:59
Alignment explanation
Indices: 76621062--76621184 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
76621052 CCGCACACAC
* *
76621062 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
76621120 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
76621178 AGTGCCA
1 AGTGCCA
76621185 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:76621129 original size:29 final size:29
Alignment explanation
Indices: 76621083--76621184 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
76621073 CTTCGAGCTC
76621083 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76621112 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76621141 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76621170 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76621185 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76629033 original size:29 final size:29
Alignment explanation
Indices: 76628999--76629103 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
76628989 TACTCGATTT
* * *
76628999 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
76629028 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
76629057 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
76629086 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76629104 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76629091 original size:58 final size:59
Alignment explanation
Indices: 76629037--76629159 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
76629027 CCGCACACAC
* *
76629037 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
76629095 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
76629153 AGTGCCA
1 AGTGCCA
76629160 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:76629104 original size:29 final size:29
Alignment explanation
Indices: 76629058--76629159 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
76629048 CTTCGAGCTC
76629058 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76629087 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76629116 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76629145 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76629160 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76631855 original size:50 final size:49
Alignment explanation
Indices: 76631746--76631921 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 49
76631736 CTGGTACGCA
* * **
76631746 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAACAGTCTAATACACG
* * * *
76631795 TAGTATCCTGCATTTAGTACTACACAAGTGACCTCACCA-TCTAATATACG
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-C-CAACAGTCTAATACACG
* * *** * *
76631845 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAACAG---TCTAATACACG
76631896 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76631922 TGCGACCTCA
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 27 0.26
50 37 0.36
51 35 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCAACAGTCTAATACACG
Found at i:76631919 original size:101 final size:99
Alignment explanation
Indices: 76631746--76631932 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
76631736 CTGGTACGCA
* * * * *
76631746 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTATCCTGCATTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
76631811 GTACTACACAAGTGACCTCACCATCTAATATACG
66 GTACTACACAAGCGACCTCACCATCTAATATACG
* * *
76631845 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
76631909 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACAAGCGACCTCAC
76631933 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
101 41 0.55
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACAAGCGACCTCACCATCTAATATACG
Found at i:76633782 original size:40 final size:40
Alignment explanation
Indices: 76633637--76633800 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 40
76633627 CGGGATTCAA
* * * *
76633637 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
76633677 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
76633717 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76633757 TCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76633797 CCGG
1 CCGG
76633801 GTATCATTCA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76633784 original size:80 final size:80
Alignment explanation
Indices: 76633637--76633800 Score: 186
Period size: 80 Copynumber: 2.0 Consensus size: 80
76633627 CGGGATTCAA
* * ** * *
76633637 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
76633702 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * * *
76633717 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCTCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
76633781 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
76633797 CCGG
1 CCGG
76633801 GTATCATTCA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:76637118 original size:50 final size:49
Alignment explanation
Indices: 76637005--76637180 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
76636995 CTGGTACGCA
* * **
76637005 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
76637054 TAGTAGCCTACACTTAGTACTACACACGTGACCTTACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC--AACAGTCTAATACACG
* * * * *
76637104 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-A-ATACACG
76637155 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76637181 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
49 32 0.30
50 41 0.38
51 33 0.31
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:76637188 original size:101 final size:99
Alignment explanation
Indices: 76637005--76637188 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
76636995 CTGGTACGCA
* * *
76637005 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGCCTACACTTA
*
76637070 GTACTACACACGTGACCTTACCATCTAATACACG
66 GTACTACACACGCGACCTTACCATCTAATACACG
* * * *
76637104 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCAGGTACACATAGTAGCCTACAC
*
76637168 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
76637189 CACAATAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
98 4 0.05
99 30 0.41
101 39 0.53
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTTACCATCTAATACACG
Found at i:76639232 original size:13 final size:13
Alignment explanation
Indices: 76639195--76639237 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
76639185 ATTATTCATT
*
76639195 TTTTAACATATTA
1 TTTTAATATATTA
76639208 TTTTAATATATTA
1 TTTTAATATATTA
76639221 TTTTGAAT-TATTGA
1 TTTT-AATATATT-A
76639235 TTT
1 TTT
76639238 CACCTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 20 0.74
14 7 0.26
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (13 bp):
TTTTAATATATTA
Found at i:76639940 original size:16 final size:15
Alignment explanation
Indices: 76639895--76639943 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
76639885 TTGAATTTTA
76639895 TATTTTATATATTATT
1 TATTTTATAT-TTATT
*
76639911 TATTCTTATTTTTATT
1 TATT-TTATATTTATT
76639927 TATTTTATAATTTATT
1 TATTTTAT-ATTTATT
76639943 T
1 T
76639944 CAAATTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.14
16 20 0.69
17 5 0.17
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTATATTTATT
Found at i:76642931 original size:40 final size:40
Alignment explanation
Indices: 76642857--76642998 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
76642847 CCGCACCAAG
* * * * * *
76642857 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
76642897 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
76642937 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
76642977 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
76642999 GTAATTTTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:76643017 original size:40 final size:40
Alignment explanation
Indices: 76642889--76643040 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
76642879 ATCACGATTT
* * * * *
76642889 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
76642929 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * * **
76642969 GCACAATTGCCTTCGGGTCTTAACCCGGATGTA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
76643009 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
76643041 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 89 0.94
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:76651038 original size:40 final size:40
Alignment explanation
Indices: 76650964--76651105 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
76650954 CCGCACCAAG
* * * * * *
76650964 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
76651004 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
76651044 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
76651084 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
76651106 GTAATTTTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:76651124 original size:40 final size:40
Alignment explanation
Indices: 76650996--76651147 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
76650986 ATCACGATTT
* * * * *
76650996 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
76651036 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * * **
76651076 GCACAATTGCCTTCGGGTCTTAACCCGGATGTA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
76651116 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
76651148 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 89 0.94
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:76656609 original size:26 final size:26
Alignment explanation
Indices: 76656579--76656631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
76656569 TTTATAGTTT
76656579 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
76656605 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
76656631 T
1 T
76656632 GCATGTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:76661757 original size:26 final size:26
Alignment explanation
Indices: 76661728--76661783 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
76661718 TGATAAAAAT
76661728 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76661754 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76661780 TGAT
1 TGAT
76661784 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76663291 original size:26 final size:26
Alignment explanation
Indices: 76663262--76663314 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
76663252 TTTACAGTTT
76663262 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
76663288 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
76663314 T
1 T
76663315 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:76673696 original size:40 final size:40
Alignment explanation
Indices: 76673676--76673814 Score: 228
Period size: 40 Copynumber: 3.5 Consensus size: 40
76673666 AGTGACTAAT
76673676 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA
* *
76673716 TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA
76673756 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATA
*
76673796 TCC-GGCTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
76673815 TACTTGGTTT
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.18
40 76 0.82
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA
Found at i:76673771 original size:80 final size:79
Alignment explanation
Indices: 76673638--76673814 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 79
76673628 GAATGATAAC
** * * *
76673638 CGGGCTATTTCCCAAAGGCCTTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGA
1 CGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGA
76673703 GCGAGTTA-CTATATT
66 GCGAG-TAGCTATA-T
* *
76673718 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
76673782 AGCGAGTAGCTATAT
65 AGCGAGTAGCTATAT
*
76673797 CCGGCTAAATCCCGAAGG
1 CGGGCTAAATCCCGAAGG
76673815 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 21 0.24
80 66 0.76
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTAGCTATAT
Found at i:76681596 original size:40 final size:40
Alignment explanation
Indices: 76681541--76681758 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
76681531 CGAATGATAA
* * * *
76681541 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
76681581 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76681621 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** *
76681661 CCGGGCTGGGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76681701 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
76681741 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76681759 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 17 0.10
40 144 0.89
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76683620 original size:44 final size:44
Alignment explanation
Indices: 76683542--76683992 Score: 215
Period size: 44 Copynumber: 10.2 Consensus size: 44
76683532 AGCCACCAGC
* **
76683542 CTTAT-TTCCCTGAGGTAGCGAGGGAATA-AGCTGAAGATTGTAGT
1 CTTATCTT-CCTGAGGTAGCAAGGGAGCAGA-CTGAAGATTGTAGT
*
76683586 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
* * * * ** *
76683631 CTTATC-TCCTTGAGATAGCAATGGAGCAGA-TAAAAAACGGTGAAT
1 CTTATCTTCC-TGAGGTAGCAAGGGAGCAGACT-GAAGATTGT-AGT
* * * ** ***** **
76683676 CTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAAC
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* ** *
76683720 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * * *
76683764 CTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
* * * * * *
76683809 CTTATCTCCCTGAGATAGC-AGTAGAGCAGA-TCGAAGATGGCGAAT
1 CTTATCTTCCTGAGGTAGCAAG-GGAGCAGACT-GAAGATTG-TAGT
* * * * * ** *
76683854 CTTATC-TCCTCGAGGTAGCAGGGGAGTAGATTTTAACCA--CCAGC
1 CTTATCTTCCT-GAGGTAGCAAGGGAGCAGA-CTGAA-GATTGTAGT
* * ** *
76683898 CTTA-C-TCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
*
76683941 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
76683986 CTTATCT
1 CTTATCT
76683993 CCCTAAGCAG
Statistics
Matches: 302, Mismatches: 80, Indels: 49
0.70 0.19 0.11
Matches are distributed among these distances:
42 4 0.01
43 27 0.09
44 143 0.47
45 117 0.39
46 9 0.03
47 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
Found at i:76683763 original size:178 final size:178
Alignment explanation
Indices: 76683463--76684140 Score: 957
Period size: 178 Copynumber: 3.8 Consensus size: 178
76683453 CTTACCTTCT
* * *
76683463 TGAGATAGCAGTGGAGCAGATCGAAGACGGTGAATCTTATTTTCCCGAGGTAGCAGGGGGGTAGA
1 TGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGA
* * * * ** *
76683528 TTTTAGCCACCAGCCTTATTTCCCTGAGGTAGCGAGGGAATAAGCTGAAGATTGTAGTCTTATCT
66 TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCT
*
76683593 TCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCT
131 TCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCC
* ** * * *
76683641 TGAGATAGCAATGGAGCAGATAAAAAACGGTGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGA
1 TGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGA
* * *
76683706 TTTTAGCCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCT
66 TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCT
* * *
76683771 TTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAGATCTTATCTCCC
131 TCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCC
* *
76683819 TGAGATAGCAGTAGAGCAGATCGAAGATGGCGAATCTTATC-TCCTCGAGGTAGCAGGGGAGTAG
1 TGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCC-CGAGGTAGCAGGGGAGTAG
* * * *
76683883 ATTTTAACCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTTGTAGTCTTATC
65 ATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATC
* *
76683947 TTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCC
130 TTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCC
* * * * * * *
76683996 TAAG-CAGTAGTGGAGCAGATCGAAGATGGCGAATCTCATCTTCCCAAGGTAGCAAGGGAGTAGA
1 TGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGA
*
76684060 TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCG
66 TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCT
* *
76684125 TCCTGAGATAGTAAGG
131 TCCTGAGGTAGCAAGG
76684141 AAGTAGATTG
Statistics
Matches: 446, Mismatches: 51, Indels: 7
0.88 0.10 0.01
Matches are distributed among these distances:
176 67 0.15
177 153 0.34
178 226 0.51
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (178 bp):
TGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGA
TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCT
TCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCC
Found at i:76684175 original size:177 final size:178
Alignment explanation
Indices: 76683469--76684224 Score: 948
Period size: 177 Copynumber: 4.3 Consensus size: 178
76683459 TTCTTGAGAT
* * * *
76683469 AGCAGTGGAGCAGATCGAAGACGGTGAATCTTATTTTCCCGAGGTAGCAGGGGGGTAGATTTTAG
1 AGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAG
* * * * ** *
76683534 CCACCAGCCTTATTTCCCTGAGGTAGCGAGGGAATAAGCTGAAGATTGTAGTCTTATCTTCCTGA
66 CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCTTCCTGA
* * * *
76683599 GGTAGCAAGGGAGCAGACTGAAGATTGAAGATCTTATCTCCTTGAGAT
131 GGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGAC
* ** * * * *
76683647 AGCAATGGAGCAGATAAAAAACGGTGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAG
1 AGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAG
* * * *
76683712 CCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTTCTGA
66 CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCTTCCTGA
* * * * *
76683777 GGTAGCAAGGGAGAAGACTGAATATTGAAGATCTTATCTCCCTGAGAT
131 GGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGAC
*
76683825 AGCAGTAGAGCAGATCGAAGATGGCGAATCTTATC-TCCTCGAGGTAGCAGGGGAGTAGATTTTA
1 AGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCC-CGAGGTAGCAGGGGAGTAGATTTTA
* * * *
76683889 ACCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTTGTAGTCTTATCTTCCTG
65 GCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCTTCCTG
*
76683953 AGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCCTAAG-C
130 AGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGAC
* * * *
76684001 AGTAGTGGAGCAGATCGAAGATGGCGAATCTCATCTTCCCAAGGTAGCAAGGGAGTAGATTTTAG
1 AGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAG
*
76684066 CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCGTCCTGA
66 CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCTTCCTGA
* * * * * * * *
76684131 GATAGTAAGGAAGTAGATTG-AGAATTGTACATCTTATTTCCCTAA-CC
131 GGTAGCAAGGAAGCAGACTGAAG-ATTGAAGATCTTATCTCCCTAAGAC
* * * * *
76684178 AGAAGTGGAACAAATC-AAGGATGGCAAATCTTATCTTCCCAAGGTAG
1 AGCAGTGGAGCAGATCGAA-GATGGCGAATCTTATCTTCCCGAGGTAG
76684225 TAAAGGAGCA
Statistics
Matches: 512, Mismatches: 60, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
176 71 0.14
177 221 0.43
178 220 0.43
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (178 bp):
AGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAG
CCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATTGTAGTCTTATCTTCCTGA
GGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGAC
Found at i:76686541 original size:16 final size:16
Alignment explanation
Indices: 76686507--76686544 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
76686497 ATTTTATGTA
*
76686507 TTATTTATTCTTATTT
1 TTATTTATTCTTATAT
76686523 TTATTTATT-TTATAAT
1 TTATTTATTCTTAT-AT
76686539 TTATTT
1 TTATTT
76686545 CAAATTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTCTTATAT
Found at i:76686717 original size:25 final size:24
Alignment explanation
Indices: 76686665--76686717 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 24
76686655 TTCATTACCT
* *
76686665 TTTAAAAGTTTTTTTGTTTCATTG
1 TTTAAAAGTTTTTTTGTTTCAATC
76686689 TTTAAATAGATTTTTTTGTTT-AATC
1 TTTAAA-AG-TTTTTTTGTTTCAATC
76686714 TTTA
1 TTTA
76686718 TTTAGAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 8 0.32
26 11 0.44
ACGTcount: A:0.25, C:0.04, G:0.09, T:0.62
Consensus pattern (24 bp):
TTTAAAAGTTTTTTTGTTTCAATC
Found at i:76691640 original size:57 final size:58
Alignment explanation
Indices: 76691546--76691685 Score: 147
Period size: 57 Copynumber: 2.4 Consensus size: 58
76691536 TGTATACGAT
* ** ** * * * *
76691546 AGGATTACCAGTCCAAGCTAAATCCTTTTTATGACATATGCTCTAAAGAACTTG-ATC
1 AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
* * * *
76691603 TGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAGAGGATTTGTATA
1 AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
*
76691661 AGGATTACCCATCCGGGCTAAATCC
1 AGGATTACCCGTCCGGGCTAAATCC
76691686 TTTCTGTAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 42 0.63
58 25 0.37
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (58 bp):
AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
Found at i:76699251 original size:23 final size:23
Alignment explanation
Indices: 76699225--76699271 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
76699215 GATATTAAAG
*
76699225 TTTTCCACGAATGATACGCTGTA
1 TTTTCCACCAATGATACGCTGTA
76699248 TTTTCCACCAATGATACGCTGTA
1 TTTTCCACCAATGATACGCTGTA
76699271 T
1 T
76699272 CTCTCAGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (23 bp):
TTTTCCACCAATGATACGCTGTA
Found at i:76700833 original size:17 final size:18
Alignment explanation
Indices: 76700811--76700844 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76700801 TACATTGAAG
76700811 TGTTTT-AGTGAAAACCA
1 TGTTTTCAGTGAAAACCA
*
76700828 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
76700845 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCA
Found at i:76701938 original size:28 final size:29
Alignment explanation
Indices: 76701906--76702019 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
76701896 TGCCTGTATT
* *
76701906 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
76701934 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
76701963 TGGCCTATTAGGCCCAAATCACATTTC-TA
1 TGGCCCATTAGGCCCAAATCACA-TTCATA
* *
76701992 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
76702020 ATAATGCTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.04
28 22 0.30
29 46 0.63
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:76702003 original size:58 final size:57
Alignment explanation
Indices: 76701898--76702007 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
76701888 ATTTCACATG
* *
76701898 CCTGTATTTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATCA
1 CCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCA
* * *
76701955 CCTGTATATGGCCTATTAGGCCCAAATCACATTTC-TATGGCCCGTTAGGCCCA
1 CCTGTATATGGCCCATTAAGCCC-AATCACA-TTCATATGGCCCATTAGGCCCA
76702008 GTCACATTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 20 0.43
58 23 0.50
59 3 0.07
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (57 bp):
CCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCA
Found at i:76702257 original size:16 final size:16
Alignment explanation
Indices: 76702232--76702273 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
76702222 TAGCTAAACT
*
76702232 TTTC-ACTTTTTGGCA
1 TTTCGACTTTTCGGCA
76702247 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
76702263 TTTCGGCTTTT
1 TTTCGACTTTT
76702274 GCCGATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.10, C:0.21, G:0.17, T:0.52
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:76706437 original size:49 final size:50
Alignment explanation
Indices: 76706364--76706596 Score: 274
Period size: 49 Copynumber: 4.7 Consensus size: 50
76706354 ATCTACTGTG
*
76706364 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
76706414 -GGTCATATGTATAGTACTAAGTGCCGGCTACTATC-CGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CGTGTACCGGATAA-TT
* * * * * **
76706464 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
76706514 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
76706564 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
76706597 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 69 0.45
50 48 0.32
51 35 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:76711470 original size:44 final size:42
Alignment explanation
Indices: 76711399--76711514 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
76711389 TATGTGATTT
* * ** *
76711399 CGTGTAAGACCACGTCTAGGATGTTGGCATCA-ATTTGAGATTCA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCATATAT--GA-TCA
*
76711443 CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATCT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATCA
* *
76711485 CGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
76711515 TGATAGTTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.48
43 2 0.03
44 28 0.44
45 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATCA
Found at i:76718871 original size:44 final size:42
Alignment explanation
Indices: 76718812--76718981 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 42
76718802 TAGGATTACG
* *
76718812 ATATGTGATTTCGTGTAAGACTACGTCTGGGACATTGGCATC
1 ATATATGATTTCGTGTAAGACAACGTCTGGGACATTGGCATC
* * *
76718854 GATTTGA-GATTTACGTGTAAGACAATGTTTGGGACATTGGCATC
1 -ATAT-ATGATTT-CGTGTAAGACAACGTCTGGGACATTGGCATC
* * *
76718898 ATATATGATTTCGTGTAAGAC-CCTGTCTGAGACAGTGGCATC
1 ATATATGATTTCGTGTAAGACAAC-GTCTGGGACATTGGCATC
* * ** *
76718940 A-ATAGTTGATTACATGTAAGACCCCGTCTGGGACATAGGCAT
1 ATATA--TGATTTCGTGTAAGACAACGTCTGGGACATTGGCAT
76718982 TTTACGAGAT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
41 3 0.03
42 27 0.26
43 44 0.42
44 30 0.29
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATATATGATTTCGTGTAAGACAACGTCTGGGACATTGGCATC
Found at i:76721450 original size:40 final size:39
Alignment explanation
Indices: 76721340--76721476 Score: 120
Period size: 40 Copynumber: 3.4 Consensus size: 39
76721330 GCATTTGGAC
* * *
76721340 AAAAAACGCCGCAAAATATGTAC-ATCAGTGGCGTTTG-A
1 AAAAAACGCCGCAAAAGAT-CACTATTAGTGGCGTTTGTA
* *
76721378 ATAAAAACGCCGCTATAGATCAGAGCTA-TAGTGGCGTTTGTCA
1 A-AAAAACGCCGCAAAAGATC--A-CTATTAGTGGCGTTTGT-A
76721421 AAAAAACGCCGCAAAAGATCACTATTAGTGGCGCTTATGT-
1 AAAAAACGCCGCAAAAGATCACTATTAGTGGCG-TT-TGTA
*
76721461 AGAAAACGCCGCAAAA
1 AAAAAACGCCGCAAAA
76721477 AATAAAGCAT
Statistics
Matches: 81, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
38 1 0.01
39 18 0.22
40 25 0.31
41 14 0.17
42 21 0.26
43 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (39 bp):
AAAAAACGCCGCAAAAGATCACTATTAGTGGCGTTTGTA
Found at i:76721811 original size:155 final size:152
Alignment explanation
Indices: 76721463--76721891 Score: 457
Period size: 155 Copynumber: 2.7 Consensus size: 152
76721453 GCTTATGTAG
* * * * *
76721463 AAAACGCCGCAAAAAATAAAGCATTAGCGGCGTTTATAAAAGAAAGCCACAATGGCTGACACATT
1 AAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTT-TAAAA-AACGCCGCAATGG-TGACGCATT
* * *
76721528 AGCGGCGGTTGTCAAAAAACGCCGCAAAAGTGTTGAGCAAAATGGTGCCGTATGTTGGTGAGCTC
63 AGCGGCGGTT-TCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTAGGTGAGC-C
* *
76721593 TTTTGAGGCATTAGCGGCGTTTTACCA
126 TATTGAGGCATTAGCGGCGTTCTACCA
* * * *
76721620 AAAATGCCGCTATAACTTCAAGCATTAGCGGAGTTTTACCAAAAACGCCGCAATAGGTGACGCAT
1 AAAACGCCGC-AAAAATTCAAGCATTAGCGGCGTTTTA--AAAAACGCCGCAAT-GGTGACGCAT
* * * * *
76721685 TAGCGGCGGTTTCTACAAACGTCGCAAAAGTATTGAGCAAAACGGCGCCGTGTGTAGGTGAG-CT
62 TAGCGGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTAGGTGAGCCT
**
76721749 ATTGAGGCATTAGCGGCGATTCT-CGT
127 ATTGAGGCATTAGCGGCG-TTCTACCA
* * * * *
76721775 AAAACACCGCAAAAAGTTCAAGCATTAGCGGCGTTTTTGTAAAAGCGCCGCAATGGGTGAAGTAT
1 AAAACGCCGCAAAAA-TTCAAGCATTAGCGGCG-TTTT-AAAAAACGCCGCAAT-GGTGACGCAT
* *
76721840 TAGCGGCGTTTTTCTAAAAACGCCGCAGAAGTGTTGAGCAAAACGGTGCCGT
62 TAGCGGCG-GTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGTGCCGT
76721892 CCATTAGTTA
Statistics
Matches: 226, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
154 3 0.01
155 73 0.32
156 44 0.19
157 54 0.24
158 47 0.21
159 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (152 bp):
AAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTTTAAAAAACGCCGCAATGGTGACGCATTAGC
GGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTAGGTGAGCCTATTG
AGGCATTAGCGGCGTTCTACCA
Found at i:76721826 original size:41 final size:40
Alignment explanation
Indices: 76721755--76721866 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 40
76721745 AGCTATTGAG
* * * *
76721755 GCATTAGCGGCGATTCTCGTAAAACACCGCAAAAAGTTCAA
1 GCATTAGCGGCG-TTTTTGTAAAACGCCGCAAAAAGGTCAA
** *
76721796 GCATTAGCGGCGTTTTTGTAAAAGCGCCGC-AATGGGTGAA
1 GCATTAGCGGCGTTTTTGTAAAA-CGCCGCAAAAAGGTCAA
* *
76721836 GTATTAGCGGCGTTTTTCTAAAAACGCCGCA
1 GCATTAGCGGCGTTTTTGT-AAAACGCCGCA
76721867 GAAGTGTTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 38 0.64
41 21 0.36
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (40 bp):
GCATTAGCGGCGTTTTTGTAAAACGCCGCAAAAAGGTCAA
Found at i:76723314 original size:9 final size:10
Alignment explanation
Indices: 76723289--76723313 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
76723279 TTTGCTAAGT
76723289 CATTTTCCCC
1 CATTTTCCCC
76723299 CATTTTCCCC
1 CATTTTCCCC
76723309 CATTT
1 CATTT
76723314 CGTCTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (10 bp):
CATTTTCCCC
Found at i:76726979 original size:29 final size:29
Alignment explanation
Indices: 76726917--76727019 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76726907 GTGACGAGAT
* * *
76726917 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76726946 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76726975 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76727004 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76727020 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76734996 original size:29 final size:29
Alignment explanation
Indices: 76734934--76735036 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76734924 GTGACGAGAT
* * *
76734934 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76734963 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76734992 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76735021 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76735037 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76737800 original size:14 final size:13
Alignment explanation
Indices: 76737777--76737806 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
76737767 ATTACTATAA
76737777 TAATTATATGAAG
1 TAATTATATGAAG
76737790 TAATATATATGAAG
1 TAAT-TATATGAAG
76737804 TAA
1 TAA
76737807 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:76738186 original size:183 final size:182
Alignment explanation
Indices: 76737878--76738244 Score: 671
Period size: 183 Copynumber: 2.0 Consensus size: 182
76737868 ATATAGTTCT
*
76737878 ATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCAA
1 ATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCAA
76737943 CTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAAG
66 CTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAAG
76738008 TTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTAC
131 TTTTCATA-TTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTAC
* * *
76738061 ATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCAG
1 ATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCAA
*
76738126 CTATTGGTTTAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAAG
66 CTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAAG
*
76738191 TTTTTATATTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTAC
131 TTTTCATATTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTAC
76738243 AT
1 AT
76738245 CTGTTCTAGG
Statistics
Matches: 178, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
182 46 0.26
183 132 0.74
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (182 bp):
ATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCAA
CTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAAG
TTTTCATATTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTAC
Done.