Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 250 of 425
Found at i:76739386 original size:272 final size:273
Alignment explanation
Indices: 76738723--76739396 Score: 1280
Period size: 274 Copynumber: 2.5 Consensus size: 273
76738713 CCAACCTTAT
*
76738723 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
76738788 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATATTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
76738853 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTTATTTCCAATGTACTTAT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTTATTTCCAATGTACTTAT
*
76738918 AAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
196 AAAAATTAAACTACGATTCTTTTTTATATTATTATAATCAAATTAC-ATTTTTTATATTAATAAT
76738983 GTTTGATTTTAATA
260 GTTTGATTTTAATA
76738997 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
76739062 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
76739127 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA-TTTATTTCCAATGTACTTAT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTTATTTCCAATGTACTTAT
76739191 AAAAATTAAACTACGATTCTTTTTTTATATTATTATAATCAAATTAC-TTTTTTATATTAATAAT
196 AAAAATTAAACTACGATTC-TTTTTTATATTATTATAATCAAATTACATTTTTTATATTAATAAT
76739255 GTTTGATTTTAATA
260 GTTTGATTTTAATA
*
76739269 TTTAAATACTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
76739334 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
76739397 TCCGTTTTAT
Statistics
Matches: 395, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
272 158 0.40
273 39 0.10
274 198 0.50
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (273 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTTATTTCCAATGTACTTAT
AAAAATTAAACTACGATTCTTTTTTATATTATTATAATCAAATTACATTTTTTATATTAATAATG
TTTGATTTTAATA
Found at i:76739657 original size:14 final size:15
Alignment explanation
Indices: 76739606--76739660 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
76739596 AACGACATGT
*
76739606 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
76739622 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
76739635 ATATTATTTAATTAA
1 ATATTATTTAATTAA
76739650 AT-TTATTTAAT
1 ATATTATTTAAT
76739661 CCGCTACTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 3 0.09
13 7 0.21
14 11 0.32
15 6 0.18
16 4 0.12
17 3 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:76739806 original size:9 final size:9
Alignment explanation
Indices: 76739764--76739953 Score: 91
Period size: 9 Copynumber: 20.6 Consensus size: 9
76739754 TATTTGATAT
*
76739764 CATAATTTA
1 CATAACTTA
*
76739773 TATAACTTA
1 CATAACTTA
*
76739782 CCA-AACGTA
1 -CATAACTTA
76739791 CATAACTTA
1 CATAACTTA
*
76739800 TATAACTTA
1 CATAACTTA
* *
76739809 GATAA-ATA
1 CATAACTTA
*
76739817 TATAACTTA
1 CATAACTTA
76739826 CATAACTTA
1 CATAACTTA
76739835 CATAATACTTA
1 CAT-A-ACTTA
* *
76739846 AATATATTTTATA
1 CATA-A--CT-TA
*
76739859 TCATAATTTA
1 -CATAACTTA
76739869 CATAACTTA
1 CATAACTTA
*
76739878 CATAATTTA
1 CATAACTTA
*
76739887 TATAACTTA
1 CATAACTTA
* *
76739896 GATAA-ATA
1 CATAACTTA
* *
76739904 TATAATTTA
1 CATAACTTA
*
76739913 CATAA-ATA
1 CATAACTTA
* * *
76739921 TATATCATA
1 CATAACTTA
76739930 TCATAACTTA
1 -CATAACTTA
76739940 CATAACTTA
1 CATAACTTA
76739949 CATAA
1 CATAA
76739954 TACTTAAATA
Statistics
Matches: 140, Mismatches: 29, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
8 19 0.14
9 92 0.66
10 13 0.09
11 9 0.06
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:76739933 original size:71 final size:70
Alignment explanation
Indices: 76739791--76739955 Score: 208
Period size: 71 Copynumber: 2.4 Consensus size: 70
76739781 ACCAAACGTA
* * * * *
76739791 CATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTTACATAATACTTAAATATATTT
1 CATAACTTACATAACTTACATAATATATATAACTTACATAACATACATAATACATAAATATATAT
*
76739855 TATAT
66 CATAT
* * * *
76739860 CATAATTTACATAACTTACATAATTTATATAACTTAGATAA-ATATATAATTTACATAAATATAT
1 CATAACTTACATAACTTACATAATATATATAACTTACATAACATACATAA--TACATAAATATAT
76739924 ATCATAT
64 ATCATAT
76739931 CATAACTTACATAACTTACATAATA
1 CATAACTTACATAACTTACATAATA
76739956 CTTAAATATA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 26 0.32
70 15 0.19
71 40 0.49
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (70 bp):
CATAACTTACATAACTTACATAATATATATAACTTACATAACATACATAATACATAAATATATAT
CATAT
Found at i:76739935 original size:96 final size:96
Alignment explanation
Indices: 76739737--76739944 Score: 215
Period size: 96 Copynumber: 2.1 Consensus size: 96
76739727 ATAAAAAACT
* *
76739737 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACCAAACGTACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCAAACGTACATAACTTAGA
* * * *
76739802 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * ** *
76739833 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA-CATAATTTATATAACTTAG
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCA-AACGTACATAACTTAG
* * * *
76739897 ATAA-ATATATAATTTACATAA-ATATATATCA
65 ATAACATAGATAA-ATACATAACATACATAACA
76739928 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
76739945 CTTACATAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
95 16 0.18
96 69 0.76
98 6 0.07
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCAAACGTACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:76745191 original size:40 final size:40
Alignment explanation
Indices: 76745071--76745273 Score: 308
Period size: 39 Copynumber: 5.2 Consensus size: 40
76745061 CGGATGATAA
* *
76745071 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
76745111 CGAAGGCATTTGTGCGAGTTACTAT-TCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
76745150 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
76745190 CGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
76745229 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
76745268 CGAAGG
1 CGAAGG
76745274 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
39 93 0.60
40 62 0.40
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:76745202 original size:79 final size:79
Alignment explanation
Indices: 76745071--76745273 Score: 306
Period size: 79 Copynumber: 2.6 Consensus size: 79
76745061 CGGATGATAA
* *
76745071 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA
76745135 T-TCCGGGCTAAGTCC
64 TATCCGGGCTAAGTCC
76745150 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
76745215 TCCGGGCTAAGTCC
66 TCCGGGCTAAGTCC
* * *
76745229 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
76745274 TACTTGGTTT
Statistics
Matches: 116, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
78 22 0.19
79 93 0.80
80 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
TCCGGGCTAAGTCC
Found at i:76753404 original size:40 final size:40
Alignment explanation
Indices: 76753334--76753538 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
76753324 CGGATGATAA
* * *
76753334 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTACGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
76753374 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
76753414 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
76753454 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
76753494 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
76753533 CGAAGG
1 CGAAGG
76753539 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.11
40 135 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:76760341 original size:40 final size:40
Alignment explanation
Indices: 76760262--76760504 Score: 337
Period size: 40 Copynumber: 6.1 Consensus size: 40
76760252 CAGGATTTAA
* * *
76760262 CCGGATATAGCT-ACTCGCTC-AATGCCATCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
76760301 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76760341 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76760381 CCGGATGTAATAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76760421 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
76760461 CTGGATATAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
76760501 CCGG
1 CCGG
76760505 TTATCATCCG
Statistics
Matches: 185, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
38 1 0.01
39 17 0.09
40 167 0.90
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76761215 original size:2 final size:2
Alignment explanation
Indices: 76761208--76761233 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76761198 ATGTGCAAAC
76761208 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76761234 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76763721 original size:12 final size:12
Alignment explanation
Indices: 76763704--76763728 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76763694 ATGTAAGTGA
76763704 TCTTGATGATTT
1 TCTTGATGATTT
76763716 TCTTGATGATTT
1 TCTTGATGATTT
76763728 T
1 T
76763729 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:76764620 original size:41 final size:43
Alignment explanation
Indices: 76764429--76764734 Score: 163
Period size: 44 Copynumber: 6.7 Consensus size: 43
76764419 TGATTTATGC
* * ** * *
76764429 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGTTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GAAAAGAGATGA
* * * *
76764473 GCTAGTGTAAGACATGTATGAGACATGCATCAGCACGAATAAATGA-GA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-A--AA-AGA-GATGA
* * *
76764521 GCCGGTGTAATACCATGTCTGGGACATGACATCGGCACAAAGATGA-GT
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATC-G-A-AAAGA-GATGA
* *
76764569 GCCAGAGTAAGACATGTCTGGGACATGCCTC-AAAAGAGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGAAAAGAGATGA
* * * ** * *
76764610 GCCAGTGTAAGACGTGTCTAGGACACGCATCGGCTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GAAAAGAGATGA
* *
76764654 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAAGCATATATGA-GA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-AA--A-AGA-GATGA
76764702 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
76764735 AGCAATATAT
Statistics
Matches: 199, Mismatches: 45, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
41 28 0.14
42 5 0.03
43 7 0.04
44 55 0.28
46 3 0.02
47 17 0.09
48 41 0.21
49 31 0.16
50 12 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (43 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGAAAAGAGATGA
Found at i:76766668 original size:40 final size:39
Alignment explanation
Indices: 76766602--76766752 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
76766592 AAATTGAATG
* * *
76766602 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
76766641 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
76766681 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
76766721 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
76766753 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:76766766 original size:40 final size:39
Alignment explanation
Indices: 76766639--76766768 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
76766629 ATGCTGGAAA
* *
76766639 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
76766679 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
76766719 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
76766759 TTATATCCGG
1 TTATATCCGG
76766769 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:76775369 original size:48 final size:46
Alignment explanation
Indices: 76775228--76775540 Score: 203
Period size: 44 Copynumber: 6.7 Consensus size: 46
76775218 TTTGTGGGCT
* * * *
76775228 AGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAG-T-TGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGTGCC
* * * * *
76775272 AGTGTAAGACATGTCTGAGACATGCATCAGCACGCATAAATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA--CAGAGATGAGTGCC
*
76775320 AGTGTAATACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGAGTGCC
* *
76775368 AGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGAT-A--GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---C-ACAGAGATGAGTGCC
* * * * * * *
76775415 AGTGTAAAACGTGTCTAGGACACGCATTGGCTA-AGAG-T-TGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGTGCC
* * * * * *
76775459 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATAAGGGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA--CAGAGATGAGTGCC
*
76775507 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
76775541 ATATATCCCA
Statistics
Matches: 209, Mismatches: 40, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.00
43 5 0.02
44 56 0.27
46 11 0.05
47 43 0.21
48 42 0.20
49 29 0.14
50 22 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGTGCC
Found at i:76775416 original size:47 final size:46
Alignment explanation
Indices: 76775272--76775486 Score: 138
Period size: 47 Copynumber: 4.6 Consensus size: 46
76775262 GAGTTGTGCT
* * * *
76775272 AGTGTAAGACATGTCTGAGACATGCATCAGCACGCATA-AATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-CA-ACAAAGATAGCC
* *
76775320 AGTGTAATACCATGTCTGGGACATGGCATCGG--C-ACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCAACAAAGAT-A--GCC
*
76775368 AGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CAACAAAGATAGCC
* * * * * * * * * *
76775415 AGTGTAAAACGTGTCTAGGACACGCATTGG--CTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCAACAAAGAT-AGCC
76775459 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
76775487 AGCACGCATA
Statistics
Matches: 131, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
43 4 0.03
44 28 0.21
45 3 0.02
46 9 0.07
47 41 0.31
48 18 0.14
49 15 0.11
50 13 0.10
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCAACAAAGATAGCC
Found at i:76779319 original size:40 final size:40
Alignment explanation
Indices: 76779192--76779321 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
76779182 ATGCTGGAAA
* *
76779192 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * **
76779232 CTACATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
76779272 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
76779312 TTATATCCGG
1 TTATATCCGG
76779322 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:76785782 original size:40 final size:40
Alignment explanation
Indices: 76785745--76785929 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
76785735 GCTACTCGTT
*
76785745 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76785785 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
76785825 CCAATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTTAGTAACTCGCA
* * * *
76785864 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
76785905 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76785930 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76785856 original size:79 final size:81
Alignment explanation
Indices: 76785747--76785928 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
76785737 TACTCGTTCA
*
76785747 AATGCCTTCGGGACATAGCCC--GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 AATGCCTTCGGG-CTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
76785809 GATTTAGTAAC-TCGCACC
64 GATATAGTAACTTAGCA-C
* **
76785827 AATGCCTTCGGGCTTAGCCCGGGA-T-TAGTAACTCGTACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
76785890 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
* *
76785906 AAAGCCTTCGAGACTTAGCCCGG
1 AATGCCTTCG-GGCTTAGCCCGG
76785929 ACATCATTCG
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 28 0.32
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGCTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:76796824 original size:16 final size:17
Alignment explanation
Indices: 76796803--76796837 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
76796793 GATAGAGGTT
76796803 AAGGTACAGAAGAG-AA
1 AAGGTACAGAAGAGTAA
76796819 AAGGTACAGAAGAGTAA
1 AAGGTACAGAAGAGTAA
76796836 AA
1 AA
76796838 TTTCTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.57, C:0.06, G:0.29, T:0.09
Consensus pattern (17 bp):
AAGGTACAGAAGAGTAA
Found at i:76798482 original size:46 final size:47
Alignment explanation
Indices: 76798336--76798600 Score: 199
Period size: 46 Copynumber: 5.7 Consensus size: 47
76798326 TTATTTGTGT
* * * *
76798336 GCCAGTGTAAGACATGTCT-GGTCATGCATTGGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * *
76798381 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-CTAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
* *
76798429 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
76798475 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* * * * * ** *
76798519 GTCAGTGTAAGACCATGTTTGAGACATGGAATTGG-CAGGATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT-AGA
* *
76798568 GCTAGTGTAAGAACATGTTTGGGACATGGCATC
1 GCCAGTGTAAG-ACATGTCTGGGACAT-GCATC
76798601 AGTATTACAC
Statistics
Matches: 179, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
44 11 0.06
45 31 0.17
46 65 0.36
47 21 0.12
48 23 0.13
49 27 0.15
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:76798498 original size:93 final size:92
Alignment explanation
Indices: 76798339--76798508 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 92
76798329 TTTGTGTGCC
* * * *
76798339 AGTGTAAGACATGTCTGGTCATGCATTGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGGG
1 AGTGTAAGACATGTCTGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGGG
76798404 ACATGGCATCGGCATTGAGACTAGAGCT
66 ACAT-GCATCGGCATTGAGACTAGAGCT
* *
76798432 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGTA-AGCCAGTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCACATGATG-AGAGCCAGTGTAAGACCATGTCTG
76798495 GGACATGCATCGGC
64 GGACATGCATCGGC
76798509 TACGAGATGT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
92 8 0.12
93 30 0.43
94 30 0.43
95 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGCATCGGCATTGAGACTAGAGCT
Found at i:76802407 original size:24 final size:24
Alignment explanation
Indices: 76802380--76802442 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
76802370 CTTATTATGT
76802380 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76802404 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76802428 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76802443 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:76805370 original size:2 final size:2
Alignment explanation
Indices: 76805365--76805390 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76805355 ACACACACAC
76805365 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76805391 CACAATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76805996 original size:29 final size:29
Alignment explanation
Indices: 76805963--76806020 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
76805953 CACAAAGTGT
76805963 ACAAATCTGTAATCCATCAATTCATATTC
1 ACAAATCTGTAATCCATCAATTCATATTC
76805992 ACAAATCTGTAATCCATCAATTCATATTC
1 ACAAATCTGTAATCCATCAATTCATATTC
76806021 GGGAATGTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (29 bp):
ACAAATCTGTAATCCATCAATTCATATTC
Found at i:76806195 original size:25 final size:25
Alignment explanation
Indices: 76806167--76806241 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 25
76806157 AGCGATCCAA
76806167 AATCGAGAAGCTCCAG-AGAGCCATT
1 AATCG-GAAGCTCCAGAAGAGCCATT
*
76806192 AATCGGGAAGCT-CATGAAAGAGCCTTT
1 AATC-GGAAGCTCCA-G-AAGAGCCATT
76806219 AATCGGAAGCTCC-GAAGAGCCAT
1 AATCGGAAGCTCCAGAAGAGCCAT
76806242 ATATCAGGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
24 10 0.23
25 12 0.28
26 8 0.19
27 13 0.30
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (25 bp):
AATCGGAAGCTCCAGAAGAGCCATT
Found at i:76809877 original size:7 final size:7
Alignment explanation
Indices: 76809867--76809946 Score: 56
Period size: 7 Copynumber: 11.4 Consensus size: 7
76809857 GGTTTATGAC
76809867 TTAGGGT
1 TTAGGGT
76809874 TTAGGGT
1 TTAGGGT
*
76809881 TTAGGATT
1 TTAGG-GT
76809889 TTA-GGT
1 TTAGGGT
*
76809895 TTTGGGT
1 TTAGGGT
76809902 TTAGGGT
1 TTAGGGT
* *
76809909 TTTGAGT
1 TTAGGGT
***
76809916 TTAATTTT
1 TT-AGGGT
76809924 TTA-GGT
1 TTAGGGT
*
76809930 TTCGGGT
1 TTAGGGT
76809937 TTAGGGT
1 TTAGGGT
76809944 TTA
1 TTA
76809947 TGGAAGATCA
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
6 6 0.11
7 42 0.76
8 7 0.13
ACGTcount: A:0.15, C:0.01, G:0.33, T:0.51
Consensus pattern (7 bp):
TTAGGGT
Found at i:76809906 original size:35 final size:35
Alignment explanation
Indices: 76809867--76809946 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
76809857 GGTTTATGAC
* * *
76809867 TTAGGGTTTAGGGTTTAGGATTTTAGGTTTTGGGT
1 TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
* **
76809902 TTAGGGTTTTGAGTTTAATTTTTTAGGTTTCGGGT
1 TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
76809937 TTAGGGTTTA
1 TTAGGGTTTA
76809947 TGGAAGATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.15, C:0.01, G:0.33, T:0.51
Consensus pattern (35 bp):
TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
Found at i:76809917 original size:21 final size:21
Alignment explanation
Indices: 76809871--76809911 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76809861 TATGACTTAG
76809871 GGTTTAGGGTTTAGGATTTTA
1 GGTTTAGGGTTTAGGATTTTA
* *
76809892 GGTTTTGGGTTTAGGGTTTT
1 GGTTTAGGGTTTAGGATTTT
76809912 GAGTTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.37, T:0.51
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGATTTTA
Found at i:76809945 original size:28 final size:28
Alignment explanation
Indices: 76809871--76809946 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
76809861 TATGACTTAG
* * *
76809871 GGTTTAGGGTTTAGGATTTTAGGTTTTG
1 GGTTTAGGGTTTAGGGTTTAAGGTTTTA
* * **
76809899 GGTTTAGGGTTTTGAGTTTAATTTTTTA
1 GGTTTAGGGTTTAGGGTTTAAGGTTTTA
*
76809927 GGTTTCGGGTTTAGGGTTTA
1 GGTTTAGGGTTTAGGGTTTA
76809947 TGGAAGATCA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.14, C:0.01, G:0.33, T:0.51
Consensus pattern (28 bp):
GGTTTAGGGTTTAGGGTTTAAGGTTTTA
Found at i:76834834 original size:50 final size:50
Alignment explanation
Indices: 76834717--76835003 Score: 281
Period size: 50 Copynumber: 5.7 Consensus size: 50
76834707 CGAAGTTATA
* * ** **
76834717 TGGTACACATAGTAGCCTGCGCTTAGTACTACACATGCAACC-AATAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
*
76834766 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* * * ***
76834816 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATC
* * * *
76834867 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* * * * *
76834917 TGGTACACGTAGTAGCCTGCACTTAGTACTATACACATAACGTAAAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC
*** * *
76834969 TTAAAAACATAGTAGCCTGCACATAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
76835004 TGTGTTCTCA
Statistics
Matches: 196, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 38 0.19
50 84 0.43
51 39 0.20
52 35 0.18
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
Found at i:76834901 original size:51 final size:50
Alignment explanation
Indices: 76834717--76834952 Score: 289
Period size: 50 Copynumber: 4.7 Consensus size: 50
76834707 CGAAGTTATA
* * * **
76834717 TGGTACACATAGTAGCCTGCGCTTAGTACTACACATGCAACC-AA-TAATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACT-ATC
*
76834766 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATC
* * * *
76834816 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATC
* * * *
76834867 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATC
*
76834917 TGGTACACGTAGTAGCCTGCACTTAGTACTATACAC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
76834953 ATAACGTAAA
Statistics
Matches: 158, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
49 38 0.24
50 80 0.51
51 39 0.25
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATC
Found at i:76838619 original size:48 final size:48
Alignment explanation
Indices: 76838563--76838701 Score: 156
Period size: 48 Copynumber: 2.9 Consensus size: 48
76838553 TATGGCATTG
76838563 ATATGAGATCCCA-TAAGACCATGTCTGGGACATGGCATTGACATCGA
1 ATATGAGATCCCATTAAGACCATGTCTGGGACATGGCATTGACATCGA
** * * *
76838610 CATATGAGATCCCATGTAAGATAATGTTTGGGGCATGGCATTGGCATCGA
1 -ATATGAGATCCCAT-TAAGACCATGTCTGGGACATGGCATTGACATCGA
* * * *
76838660 AT-GGTGATCCCATTTAAGACCATATCTGGGATATGGCATTGA
1 ATATGAGATCCCA-TTAAGACCATGTCTGGGACATGGCATTGA
76838702 TATGAGATAC
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
48 42 0.57
49 3 0.04
50 29 0.39
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
ATATGAGATCCCATTAAGACCATGTCTGGGACATGGCATTGACATCGA
Found at i:76838728 original size:30 final size:31
Alignment explanation
Indices: 76838694--76838753 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
76838684 TCTGGGATAT
76838694 GGCATTG-ATATGAGATACCATGTAAGACTA
1 GGCATTGAATATGAGATACCATGTAAGACTA
*
76838724 GGCATTGACATATGAGATCCCATGTAAGAC
1 GGCATTGA-ATATGAGATACCATGTAAGAC
76838754 CGTGTCTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 7 0.26
32 20 0.74
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (31 bp):
GGCATTGAATATGAGATACCATGTAAGACTA
Found at i:76845529 original size:15 final size:15
Alignment explanation
Indices: 76845509--76845573 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
76845499 GTATCTTGGG
76845509 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
76845524 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
76845539 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
76845554 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
76845568 TTTCTT
1 TTTCTT
76845574 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.33
15 23 0.53
16 6 0.14
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76847250 original size:29 final size:29
Alignment explanation
Indices: 76847216--76847320 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
76847206 TACTCGATTT
* * *
76847216 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
76847245 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
76847274 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
76847303 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76847321 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76847308 original size:58 final size:59
Alignment explanation
Indices: 76847254--76847376 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
76847244 CCGCACACAC
* *
76847254 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
76847312 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
76847370 AGTGCCA
1 AGTGCCA
76847377 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:76847321 original size:29 final size:29
Alignment explanation
Indices: 76847275--76847376 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
76847265 CTTCGAGCTC
76847275 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76847304 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76847333 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76847362 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76847377 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76855227 original size:29 final size:29
Alignment explanation
Indices: 76855193--76855297 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
76855183 TACTCGATTT
* * *
76855193 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
76855222 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
76855251 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
76855280 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76855298 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76855285 original size:58 final size:59
Alignment explanation
Indices: 76855231--76855353 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
76855221 CCGCACACAC
* *
76855231 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
76855289 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
76855347 AGTGCCA
1 AGTGCCA
76855354 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:76855298 original size:29 final size:29
Alignment explanation
Indices: 76855252--76855353 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
76855242 CTTCGAGCTC
76855252 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76855281 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76855310 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76855339 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76855354 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76865104 original size:39 final size:39
Alignment explanation
Indices: 76865026--76865227 Score: 279
Period size: 39 Copynumber: 5.2 Consensus size: 39
76865016 AAACCAAGTA
* * *
76865026 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
76865065 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
76865104 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
76865144 CCTTC-GGACTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
*
76865182 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
76865222 CCTTCG
1 CCTTCG
76865228 TTATCATCCG
Statistics
Matches: 151, Mismatches: 5, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
38 30 0.20
39 68 0.45
40 53 0.35
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:76873895 original size:30 final size:31
Alignment explanation
Indices: 76873840--76873901 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
76873830 ATATTGTGTT
*
76873840 AGAGGTTAAGTTAAAATTATAAAATTT-TAG
1 AGAGGTTAAGTTAAAATAATAAAATTTATAG
*
76873870 AGAGGTTAAAGTTAAAA-AATGAAATTTATAG
1 AGAGGTT-AAGTTAAAATAATAAAATTTATAG
76873901 A
1 A
76873902 AAAAGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 15 0.54
31 13 0.46
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (31 bp):
AGAGGTTAAGTTAAAATAATAAAATTTATAG
Found at i:76877444 original size:20 final size:20
Alignment explanation
Indices: 76877419--76877462 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
76877409 AGTTCAACTT
76877419 ATTCAAAGAGAAGTCTAAGC
1 ATTCAAAGAGAAGTCTAAGC
76877439 ATTCAAAGAGAAGTCTAAGC
1 ATTCAAAGAGAAGTCTAAGC
76877459 ATTC
1 ATTC
76877463 TCTAATACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (20 bp):
ATTCAAAGAGAAGTCTAAGC
Found at i:76877897 original size:21 final size:21
Alignment explanation
Indices: 76877872--76877911 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
76877862 TCTTAACGAA
76877872 ACTTTAATACGACCTTAATAT
1 ACTTTAATACGACCTTAATAT
76877893 ACTTTAATACGACCTTAAT
1 ACTTTAATACGACCTTAAT
76877912 GTAGACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (21 bp):
ACTTTAATACGACCTTAATAT
Found at i:76878203 original size:29 final size:29
Alignment explanation
Indices: 76878159--76878224 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
76878149 ACTAAAAGTG
* *
76878159 AAGCCTTTGTGGCTGAATCTGTTATAGGT
1 AAGCCTTTGTGACTGAATCTATTATAGGT
*
76878188 AAGCCTTTGTGACTGAATCTATTATATGT
1 AAGCCTTTGTGACTGAATCTATTATAGGT
*
76878217 GAGCCTTT
1 AAGCCTTT
76878225 CTGGATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (29 bp):
AAGCCTTTGTGACTGAATCTATTATAGGT
Found at i:76882678 original size:18 final size:19
Alignment explanation
Indices: 76882638--76882680 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
76882628 TTTAACCCTC
*
76882638 GTACTTTTACAAACAAATA
1 GTACATTTACAAACAAATA
*
76882657 GTACATTTACAAA-AAATG
1 GTACATTTACAAACAAATA
76882675 GTACAT
1 GTACAT
76882681 GATAATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (19 bp):
GTACATTTACAAACAAATA
Found at i:76885059 original size:43 final size:42
Alignment explanation
Indices: 76885012--76885254 Score: 130
Period size: 42 Copynumber: 5.7 Consensus size: 42
76885002 CGATGGAAAG
*
76885012 ATACTGGCACACATAGTGCATCATCGGACAAATCGAAGCAATT
1 ATACTGGCACACA-AGTGCATCATCGGATAAATCGAAGCAATT
* * * * * * *
76885055 ATACTAGCACACGAGGTGCATCATTGGATGAGTCAAAACAATT
1 ATACTGGCACAC-AAGTGCATCATCGGATAAATCGAAGCAATT
* * * * * * * *
76885098 ATATTGGCCCACATAATGCAACATCAGATAAACCGAGGCAATC
1 ATACTGGCACACA-AGTGCATCATCGGATAAATCGAAGCAATT
* * * ** * *
76885141 A-ACTGTCACATAAGTGCATCATTGGATGTATCAAAGCAAAT
1 ATACTGGCACACAAGTGCATCATCGGATAAATCGAAGCAATT
* ** * * * *
76885182 ATACTGGTACGTAAGTACATAATCGGATAAA-CAAAAGCAAAT
1 ATACTGGCACACAAGTGCATCATCGGATAAATC-GAAGCAATT
* * * *
76885224 ATATTGTCACATAAGTGCATCATCGAATAAA
1 ATACTGGCACACAAGTGCATCATCGGATAAA
76885255 CCAAAGTACA
Statistics
Matches: 143, Mismatches: 53, Indels: 9
0.70 0.26 0.04
Matches are distributed among these distances:
41 20 0.14
42 62 0.43
43 60 0.42
44 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACTGGCACACAAGTGCATCATCGGATAAATCGAAGCAATT
Found at i:76886186 original size:29 final size:29
Alignment explanation
Indices: 76886143--76886199 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
76886133 GATTGACACC
*
76886143 TAATACTTCATGACAAAACACTACCATAT
1 TAATACTTCACGACAAAACACTACCATAT
*
76886172 TAATACTTCACGACAAAACACTTCCATA
1 TAATACTTCACGACAAAACACTACCATA
76886200 CTAACATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.44, C:0.26, G:0.04, T:0.26
Consensus pattern (29 bp):
TAATACTTCACGACAAAACACTACCATAT
Found at i:76887946 original size:46 final size:46
Alignment explanation
Indices: 76887848--76888062 Score: 167
Period size: 46 Copynumber: 4.6 Consensus size: 46
76887838 GTATATCTGT
*
76887848 GCCGATGCCATGTCCCAAACATGGTCTTACACT-GAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAG-CTTACGTCTCG-AG
* * *
76887894 GTCGATGCATGTCCTAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCTCGAG
* *
76887940 GCCGATGCATGTCCCAAACATGTCTTACACTAGC--ACTTGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTAC--GTCTCGAG
* * * * * *
76887986 GCCGATGCCATGTCCTAAACATGGTCTTACATTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCT-TACGT-CTCGAG
*
76888034 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAAACATGTCTTACA
76888063 TTGGCTCACA
Statistics
Matches: 138, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
44 13 0.09
45 14 0.10
46 65 0.47
47 25 0.18
48 19 0.14
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCTCGAG
Found at i:76888014 original size:94 final size:90
Alignment explanation
Indices: 76887848--76888062 Score: 222
Period size: 94 Copynumber: 2.3 Consensus size: 90
76887838 GTATATCTGT
* * *
76887848 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCGTAGTCGATGCATGTCCTAGAC
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGACACATCTCATAGCCGATGCATGTCCTAAAC
* *
76887913 ATGTCTTACACTAGCT-TACGT-CTCGAG
64 ATGTCTTACACTAGCTCT-CATAAT-GAG
*
76887940 GCCGATGCATGTCCCAAACATGTCTTACACT-AGCACTTGTCTCA-ATGCCGATGCCATGTCCTA
1 GCCGATGCATGTCCCAAACATGTCTTACACTGA-CAC--ATCTCATA-GCCGATG-CATGTCCTA
* * *
76888003 AACATGGTCTTACATTGGCTCTCATAATGTG
61 AACAT-GTCTTACACTAGCTCTCATAATGAG
*
76888034 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAAACATGTCTTACA
76888063 TTGGCTCACA
Statistics
Matches: 105, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
89 1 0.01
90 13 0.12
91 15 0.14
92 17 0.16
93 13 0.12
94 44 0.42
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (90 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGACACATCTCATAGCCGATGCATGTCCTAAACAT
GTCTTACACTAGCTCTCATAATGAG
Found at i:76892204 original size:18 final size:19
Alignment explanation
Indices: 76892159--76892206 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
76892149 CATGATATAC
76892159 ATAACATATATATAAAAACA
1 ATAACATA-ATATAAAAACA
* *
76892179 ATAA-ATAATATGAAAATA
1 ATAACATAATATAAAAACA
76892197 A-AACATAATA
1 ATAACATAATA
76892207 AAGATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (19 bp):
ATAACATAATATAAAAACA
Found at i:76892413 original size:20 final size:20
Alignment explanation
Indices: 76892377--76892414 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76892367 GGAAAATAAT
*
76892377 ATATATAATAAGTAATAACA
1 ATATATAATAAGAAATAACA
76892397 ATATATAATTAA-AAATAA
1 ATATATAA-TAAGAAATAA
76892415 TACTCATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
ATATATAATAAGAAATAACA
Found at i:76893942 original size:13 final size:13
Alignment explanation
Indices: 76893924--76893950 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76893914 ACTAGAAAAT
76893924 AGATTAATTAGTA
1 AGATTAATTAGTA
76893937 AGATTAATTAGTA
1 AGATTAATTAGTA
76893950 A
1 A
76893951 ATCCTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AGATTAATTAGTA
Found at i:76908496 original size:18 final size:16
Alignment explanation
Indices: 76908473--76908512 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
76908463 AAATCCTTGT
76908473 TAAAATAAAATACAATAG
1 TAAAATAAAATA-AA-AG
76908491 TAAAATAAAATAAAAG
1 TAAAATAAAATAAAAG
76908507 TAAAAT
1 TAAAAT
76908513 CTATATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.36
17 2 0.09
18 12 0.55
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.23
Consensus pattern (16 bp):
TAAAATAAAATAAAAG
Found at i:76915072 original size:6 final size:6
Alignment explanation
Indices: 76915061--76915092 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
76915051 ATACTACAAG
76915061 AGTCGC AGTCGC AGTCGC AGTCGC AGTCGC AG
1 AGTCGC AGTCGC AGTCGC AGTCGC AGTCGC AG
76915093 CCGCTAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (6 bp):
AGTCGC
Found at i:76917592 original size:95 final size:94
Alignment explanation
Indices: 76917429--76917615 Score: 311
Period size: 95 Copynumber: 2.0 Consensus size: 94
76917419 GGATCAGAGT
* * * *
76917429 TCTAAACAAAAGTTATTTCACAACCTAGGTAAGTGCTATGGTTGTATGTTAACTTCTATAGTGAT
1 TCTAAAAAAAAGTTATTTAACAACCTAGGTAAGTACTATGGTTGCATGTTAACTTCTATAGTGAT
*
76917494 AAGTTGTTAAAAGGATGAATAGGAAAATAA
66 AAGTTGTT-AAAGAATGAATAGGAAAATAA
*
76917524 TCTAAAAAAAAGTTATTTAACAACCTAGGTAAGTACTATGGTTGCATGTTAACTTCTATAGTGCT
1 TCTAAAAAAAAGTTATTTAACAACCTAGGTAAGTACTATGGTTGCATGTTAACTTCTATAGTGAT
76917589 AAGTTGTTAAAGAATGAATAGGAAAAT
66 AAGTTGTTAAAGAATGAATAGGAAAAT
76917616 GGAAAAGTAA
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
94 18 0.21
95 68 0.79
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.33
Consensus pattern (94 bp):
TCTAAAAAAAAGTTATTTAACAACCTAGGTAAGTACTATGGTTGCATGTTAACTTCTATAGTGAT
AAGTTGTTAAAGAATGAATAGGAAAATAA
Found at i:76918529 original size:27 final size:28
Alignment explanation
Indices: 76918471--76918529 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
76918461 AAAAGCCTTT
**
76918471 GTGGCAATCTACGAAATGGGAAACCTTT
1 GTGGCAATCTACGAAATGGGAAACCTAC
* * *
76918499 GTGGCAATTTATGAAAT-GGAAGCCTAC
1 GTGGCAATCTACGAAATGGGAAACCTAC
76918526 GTGG
1 GTGG
76918530 TGGATCGCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (28 bp):
GTGGCAATCTACGAAATGGGAAACCTAC
Found at i:76919364 original size:9 final size:9
Alignment explanation
Indices: 76919350--76919390 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
76919340 ATAAGTATAA
76919350 AATTAACTG
1 AATTAACTG
76919359 AATTAACTG
1 AATTAACTG
76919368 AATTAA-TCG
1 AATTAACT-G
76919377 AATTAACTG
1 AATTAACTG
76919386 AATTA
1 AATTA
76919391 CCCAAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (9 bp):
AATTAACTG
Found at i:76919380 original size:27 final size:27
Alignment explanation
Indices: 76919350--76919408 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
76919340 ATAAGTATAA
** *
76919350 AATTAACTGAATTAACTGAATTAATCG
1 AATTAACTGAATTAACCAAATTAACCG
*
76919377 AATTAACTGAATTACCCAAATTAACCG
1 AATTAACTGAATTAACCAAATTAACCG
76919404 AATTA
1 AATTA
76919409 TTTGTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTAACTGAATTAACCAAATTAACCG
Found at i:76919407 original size:9 final size:9
Alignment explanation
Indices: 76919350--76919408 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
76919340 ATAAGTATAA
*
76919350 AATTAACTG
1 AATTAACCG
*
76919359 AATTAACTG
1 AATTAACCG
*
76919368 AATTAATCG
1 AATTAACCG
*
76919377 AATTAACTG
1 AATTAACCG
* *
76919386 AATTACCCA
1 AATTAACCG
76919395 AATTAACCG
1 AATTAACCG
76919404 AATTA
1 AATTA
76919409 TTTGTATAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (9 bp):
AATTAACCG
Found at i:76919448 original size:5 final size:6
Alignment explanation
Indices: 76919426--76919479 Score: 72
Period size: 6 Copynumber: 8.5 Consensus size: 6
76919416 AAATTATATG
*
76919426 TTTTCTA TTTTTA TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA
1 TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA
76919477 TTT
1 TTT
76919480 ATTAAATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
6 30 0.70
7 12 0.28
8 1 0.02
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:76919651 original size:18 final size:18
Alignment explanation
Indices: 76919628--76919664 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76919618 ATTTTTTATT
* *
76919628 AATTTTTTGGGTTAACCG
1 AATTTTTTCGATTAACCG
76919646 AATTTTTTCGATTAACCG
1 AATTTTTTCGATTAACCG
76919664 A
1 A
76919665 CCGGTTTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (18 bp):
AATTTTTTCGATTAACCG
Found at i:76925152 original size:46 final size:46
Alignment explanation
Indices: 76925005--76925271 Score: 172
Period size: 46 Copynumber: 5.7 Consensus size: 46
76924995 TGTGAGAGCT
* ** **
76925005 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGATGTA-AGCC
* * *
76925051 AGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGA-GT-A-CT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTCA-A-GATGTAAGCC
* *
76925099 AGTGTAAGACATGTTTGGGACATGCTTCGGCTTCAAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGATGTAAGCC
** * *
76925145 AGTGTAAGACATGTCTGGGACATGCATC-AATTACGAGATGT--GAC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTT-CAAGATGTAAGCC
* * * * *
76925189 AGTGTAAGACCATGTCTGGGACATGGTATCGGC-ACAGATATGCTAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCA-AGATG-TA-AGCC
*
76925239 TGTGTAAGACCATGTCTGGGACATGACATCGGC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGC
76925272 ACTTGACCCT
Statistics
Matches: 173, Mismatches: 29, Indels: 34
0.73 0.12 0.14
Matches are distributed among these distances:
43 2 0.01
44 14 0.08
45 21 0.12
46 58 0.34
47 26 0.15
48 18 0.10
49 3 0.02
50 30 0.17
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGATGTAAGCC
Found at i:76931425 original size:46 final size:44
Alignment explanation
Indices: 76931321--76931441 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 44
76931311 GTGCCAATGC
* *
76931321 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTGGCACATCTCGAAGCCGATA
* * *
76931366 CATGTCCCAGACATGTCTTACACTGGCTTACATTTC-AAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGC--ACATCTCGAA-GCCGATA
*
76931412 CATGTCCCAGACATGTCTTAGACTGGCACA
1 CATGTCCCAGACATGTCTTACACTGGCACA
76931442 CAAATAACCT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 15 0.22
45 15 0.22
46 37 0.55
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCACATCTCGAAGCCGATA
Found at i:76938058 original size:25 final size:25
Alignment explanation
Indices: 76937970--76938061 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
76937960 TTCTGCCCTG
* * **
76937970 CAGCTCGTAGGAGCTTATTGATTCA
1 CAGCTCGTATGAGCATATCAATTCA
* * *
76937995 CAGTTCGTATGAGCTTA-CTAATTTA
1 CAGCTCGTATGAGCATATC-AATTCA
* *
76938020 CAGCTTG-AGAGAGCATATCAATTCA
1 CAGCTCGTA-TGAGCATATCAATTCA
76938045 CAGCTCGTATGAGCATA
1 CAGCTCGTATGAGCATA
76938062 CATGTACAGG
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
24 1 0.02
25 48 0.94
26 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (25 bp):
CAGCTCGTATGAGCATATCAATTCA
Found at i:76940036 original size:26 final size:26
Alignment explanation
Indices: 76939986--76940037 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76939976 TATATGTATT
*
76939986 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
76940012 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
76940038 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:76940342 original size:11 final size:11
Alignment explanation
Indices: 76940328--76940416 Score: 63
Period size: 11 Copynumber: 7.5 Consensus size: 11
76940318 TATTTACATA
76940328 ATATAAAAAAT
1 ATATAAAAAAT
*
76940339 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
76940352 GATATTAAAAAT
1 -ATATAAAAAAT
76940364 ATATACATAAAA-
1 ATATA-A-AAAAT
76940376 ATATAATAAATAT
1 ATATAA-AAA-AT
*
76940389 ATATATAAAAT
1 ATATAAAAAAT
* *
76940400 GTATAAAATAT
1 ATATAAAAAAT
76940411 ATATAA
1 ATATAA
76940417 TACATACACA
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
11 28 0.45
12 16 0.26
13 14 0.23
14 4 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:76940349 original size:45 final size:45
Alignment explanation
Indices: 76940288--76940415 Score: 120
Period size: 45 Copynumber: 2.8 Consensus size: 45
76940278 CAATATAGAC
* * *
76940288 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATATA
1 AAAAATATATACATAATATGA-TATTAAAAATATATACATAATATA
76940333 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATATA
1 AAAAATATAT-ACATAATATGATATTAAAAATATATACAT---AATATA
* * *
76940381 ATAAATATATATATAAAATG-TA-TAAAATATATATA
1 AAAAATATATACATAATATGATATTAAAA-ATATATA
76940416 ATACATACAC
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
45 32 0.45
46 7 0.10
47 10 0.14
48 22 0.31
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (45 bp):
AAAAATATATACATAATATGATATTAAAAATATATACATAATATA
Found at i:76940356 original size:25 final size:24
Alignment explanation
Indices: 76940288--76940415 Score: 83
Period size: 25 Copynumber: 5.5 Consensus size: 24
76940278 CAATATAGAC
*
76940288 AAAAATATATACAT-AATGTAGTATT
1 AAAAATATATACATAAATG-A-TATA
* *
76940313 GAAAATATTTACAT--A--ATATA
1 AAAAATATATACATAAATGATATA
*
76940333 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAA-ATGATATA
*
76940358 AAAAATATATACATAAA-AATATA
1 AAAAATATATACATAAATGATATA
* *
76940381 ATAAATATATATATAAAATG-TATA
1 AAAAATATATACAT-AAATGATATA
*
76940405 AAATATATATA
1 AAAAATATATA
76940416 ATACATACAC
Statistics
Matches: 81, Mismatches: 13, Indels: 19
0.72 0.12 0.17
Matches are distributed among these distances:
20 13 0.16
21 2 0.02
23 17 0.21
24 19 0.23
25 30 0.37
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (24 bp):
AAAAATATATACATAAATGATATA
Found at i:76940408 original size:22 final size:22
Alignment explanation
Indices: 76940357--76940415 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
76940347 AATATGATAT
*
76940357 TAAAAATATATACATAAAAATA
1 TAAAAATATATATATAAAAATA
*
76940379 TAATAAATATATATAT-AAAATG
1 TAA-AAATATATATATAAAAATA
76940401 TATAAAATATATATA
1 TA-AAAATATATATA
76940416 ATACATACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
TAAAAATATATATATAAAAATA
Found at i:76940522 original size:23 final size:23
Alignment explanation
Indices: 76940477--76940522 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
76940467 AATACCTCAT
* *
76940477 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
76940500 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
76940523 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:76944308 original size:40 final size:39
Alignment explanation
Indices: 76944264--76944406 Score: 178
Period size: 39 Copynumber: 3.6 Consensus size: 39
76944254 GTTCAAAACA
* * ** * *
76944264 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76944304 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76944344 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
76944383 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
76944407 CTCGAACATT
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 50 0.56
40 40 0.44
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:76946267 original size:28 final size:28
Alignment explanation
Indices: 76946225--76946376 Score: 119
Period size: 28 Copynumber: 5.4 Consensus size: 28
76946215 TTTTAGATAC
* *
76946225 GCCACAAATGATTTTTATAGAGAGGTTT
1 GCCACAAAGGCTTTTTATAGAGAGGTTT
* * * *
76946253 GCCATAAAGGCTTTTCCTTTATAAAGGTTT
1 GCCACAAAGGCTTTT--TATAGAGAGGTTT
* * * * *
76946283 GCCACAAAGGCTATTTAGATAGTGGTTC
1 GCCACAAAGGCTTTTTATAGAGAGGTTT
76946311 GCCACAAAGGCTTTCCTT-TA-AGAGGTTT
1 GCCACAAAGGCTTT--TTATAGAGAGGTTT
* * *
76946339 GCCACAAAAGCTTTCTATAGAGAGGTTC
1 GCCACAAAGGCTTTTTATAGAGAGGTTT
*
76946367 GCCAAAAAGG
1 GCCACAAAGG
76946377 ATTTCCTTTC
Statistics
Matches: 96, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
26 1 0.01
27 2 0.02
28 67 0.70
29 1 0.01
30 25 0.26
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (28 bp):
GCCACAAAGGCTTTTTATAGAGAGGTTT
Found at i:76946320 original size:58 final size:56
Alignment explanation
Indices: 76946225--76946385 Score: 171
Period size: 56 Copynumber: 2.8 Consensus size: 56
76946215 TTTTAGATAC
* * * * * *
76946225 GCCACAAATGATTTTTATAGAGAGGTTTGCCATAAAGGCTTTTCCTTTATAAAGGTTT
1 GCCACAAAAGCTTTCTAGAGAGAGGTTCGCCAAAAAGGC-TTTCCTTTA-AAAGGTTT
* * * * *
76946283 GCCACAAAGGCTATT-TAGATAGTGGTTCGCCACAAAGGCTTTCCTTTAAGAGGTTT
1 GCCACAAAAGCT-TTCTAGAGAGAGGTTCGCCAAAAAGGCTTTCCTTTAAAAGGTTT
* *
76946339 GCCACAAAAGCTTTCTATAGAGAGGTTCGCCAAAAAGGATTTCCTTT
1 GCCACAAAAGCTTTCTAGAGAGAGGTTCGCCAAAAAGGCTTTCCTTT
76946386 CAGAGACTCG
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
55 2 0.02
56 45 0.52
57 9 0.10
58 29 0.33
59 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (56 bp):
GCCACAAAAGCTTTCTAGAGAGAGGTTCGCCAAAAAGGCTTTCCTTTAAAAGGTTT
Found at i:76946366 original size:56 final size:55
Alignment explanation
Indices: 76946148--76946390 Score: 186
Period size: 54 Copynumber: 4.4 Consensus size: 55
76946138 GAGGCTCAGA
* * * * * **
76946148 ACAAAGGCTTTTCTTTCAGA-TATGCTACAAAGGCTTTCTGTACAGAGGTTTTCC
1 ACAAAGGCTTTCCTTTAAGAGTATGCCACAAAGGCTTTCTATAGAGAGGTTCGCC
* * * * * * * *
76946202 ACAAAGACTTTTCTTTTAGA-TACGCCACAAATGATTTTTATAGAGAGGTTTGCC
1 ACAAAGGCTTTCCTTTAAGAGTATGCCACAAAGGCTTTCTATAGAGAGGTTCGCC
* * * * * *
76946256 ATAAAGGCTTTTCCTTTATAAAGGTTTGCCACAAAGGCTATT-TAGATAGTGGTTCGCC
1 ACAAAGGC-TTTCCTTTA-AGA-GTATGCCACAAAGGCT-TTCTATAGAGAGGTTCGCC
* *
76946314 ACAAAGGCTTTCCTTTAAGAGGTTTGCCACAAAAGCTTTCTATAGAGAGGTTCGCC
1 ACAAAGGCTTTCCTTTAAGA-GTATGCCACAAAGGCTTTCTATAGAGAGGTTCGCC
* * *
76946370 AAAAAGGATTTCCTTTCAGAG
1 ACAAAGGCTTTCCTTTAAGAG
76946391 ACTCGCCATA
Statistics
Matches: 151, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
54 50 0.33
55 10 0.07
56 50 0.33
57 9 0.06
58 30 0.20
59 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (55 bp):
ACAAAGGCTTTCCTTTAAGAGTATGCCACAAAGGCTTTCTATAGAGAGGTTCGCC
Found at i:76946495 original size:28 final size:28
Alignment explanation
Indices: 76946119--76946486 Score: 113
Period size: 28 Copynumber: 13.3 Consensus size: 28
76946109 AAAGGTTTGT
*
76946119 CACAAAGGCTTTCCTTTT-AGAGGCTCAG-
1 CACAAAGGCTTT-CTTTTCAGAGGTTC-GC
*
76946147 AACAAAGGCTTT-TCTTTCAGA--TAT-GC
1 CACAAAGGCTTTCT-TTTCAGAGGT-TCGC
* * * **
76946173 TACAAAGGCTTTCTGTACAGAGGTTTTC
1 CACAAAGGCTTTCTTTTCAGAGGTTCGC
* *
76946201 CACAAAGACTTTTCTTTT-AGA--TACGC
1 CACAAAGGC-TTTCTTTTCAGAGGTTCGC
* * ** *
76946227 CACAAATGATTT-TTATAGAGAGGTTTGC
1 CACAAAGGCTTTCTT-TTCAGAGGTTCGC
* * *
76946255 CATAAAGGCTTTTCCTTTAT-AAAGGTTTGC
1 CACAAAGGC-TTT-CTTT-TCAGAGGTTCGC
** *
76946285 CACAAAGGCTATT-TAGAT-AGTGGTTCGC
1 CACAAAGGCT-TTCT-TTTCAGAGGTTCGC
* * *
76946313 CACAAAGGCTTTCCTTTAAGAGGTTTGC
1 CACAAAGGCTTTCTTTTCAGAGGTTCGC
* * **
76946341 CACAAAAGCTTTCTATAGAGAGGTTCGC
1 CACAAAGGCTTTCTTTTCAGAGGTTCGC
* * * **
76946369 CAAAAAGGATTTCCTTTCAGAGACTCGC
1 CACAAAGGCTTTCTTTTCAGAGGTTCGC
* ** * * *
76946397 CATAAAATCTTT-TCTTT--GAGATACAC
1 CACAAAGGCTTTCT-TTTCAGAGGTTCGC
* * * *
76946423 CAAAAAGGTTTTATGTAT-AGAGGTTCGC
1 CACAAAGGCTTTCT-TTTCAGAGGTTCGC
*
76946451 CACAAAGGCTTTCTTTTCAGAGGTTTGC
1 CACAAAGGCTTTCTTTTCAGAGGTTCGC
76946479 CACAAAGG
1 CACAAAGG
76946487 TATTTTTTTT
Statistics
Matches: 243, Mismatches: 72, Indels: 50
0.67 0.20 0.14
Matches are distributed among these distances:
24 2 0.01
25 5 0.02
26 42 0.17
27 14 0.06
28 148 0.61
29 10 0.04
30 20 0.08
31 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (28 bp):
CACAAAGGCTTTCTTTTCAGAGGTTCGC
Found at i:76948640 original size:205 final size:204
Alignment explanation
Indices: 76948161--76948671 Score: 679
Period size: 205 Copynumber: 2.5 Consensus size: 204
76948151 AAATCTACTT
* * *
76948161 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAA-CTTAAGCA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC-TTAATCGTAA-AA
* * * * *
76948225 CGTGAAAGCCAAATCAGCTACGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAACCATCT
64 CGTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCCTGTAAGCACAAGGATACCAAACCATCT
* ** * *
76948290 TGGATCTGCTTCAGTGTAAACATCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATTGAAGTG
129 TGGATCTACTTCAGCATAAACATCTGAAGGTTGGATCTGCTATGTATCTACCCTCCATTGAAGTA
76948355 GAGATGCCAGA
194 GAGATGCCAGA
*
76948366 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTGAAT-GTAAGAA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT-AATCGTAA-AA
* *
76948430 CGTGAAAGCAAAATCAGCTATGTCTTCAATTTGTTCCCTGTAAGCACAAGGATACCAAACCATCT
64 CGTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCCTGTAAGCACAAGGATACCAAACCATCT
* * *
76948495 TGGATCTACTTCAGCATAAACATCTGAAGG-TGAGATCTGCTATGTATCTGCTCTCTATTGAAGT
129 TGGATCTACTTCAGCATAAACATCTGAAGGTTG-GATCTGCTATGTATCTACCCTCCATTGAAGT
76948559 AGAGATGCCAGA
193 AGAGATGCCAGA
* * * * *
76948571 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTT-GAATTTACTTCATCGTAAATA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG-ATTTGCTTAATCGTAAA-A
* * * *
76948635 CGTGAAAGCCAAATCAGTTATATCTTCGATCTGCTCC
64 CGTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCC
76948672 TCGTCGAATA
Statistics
Matches: 269, Mismatches: 31, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
204 8 0.03
205 261 0.97
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (204 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCGTAAAACG
TGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCCTGTAAGCACAAGGATACCAAACCATCTTG
GATCTACTTCAGCATAAACATCTGAAGGTTGGATCTGCTATGTATCTACCCTCCATTGAAGTAGA
GATGCCAGA
Found at i:76966248 original size:26 final size:26
Alignment explanation
Indices: 76966198--76966249 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76966188 TATATGTATT
*
76966198 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
76966224 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
76966250 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:76966559 original size:45 final size:44
Alignment explanation
Indices: 76966498--76966622 Score: 116
Period size: 45 Copynumber: 2.8 Consensus size: 44
76966488 CAATATAGAC
* *
76966498 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATATA
1 AAAAATATATACATAATATGA-TATT-AAAATATATACATAATATA
76966543 AAAAATATATGA-ATAATATGATATTAAAATATATACATAAAAATATA
1 AAAAATATAT-ACATAATATGATATTAAAATATATACAT---AATATA
* *
76966590 ATAAATATATATAT-ATAATG-TA-TAAAATATATA
1 AAAAATATATACATAAT-ATGATATTAAAATATATA
76966623 TAATACATAC
Statistics
Matches: 70, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
44 12 0.17
45 31 0.44
46 7 0.10
47 20 0.29
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (44 bp):
AAAAATATATACATAATATGATATTAAAATATATACATAATATA
Found at i:76966597 original size:9 final size:9
Alignment explanation
Indices: 76966535--76966627 Score: 54
Period size: 9 Copynumber: 10.7 Consensus size: 9
76966525 AAATATTTAC
76966535 ATAATATA-
1 ATAATATAT
*
76966543 A-AAAATAT
1 ATAATATAT
76966551 ATGAATA-AT
1 AT-AATATAT
*
76966560 ATGATAT-T
1 ATAATATAT
*
76966568 AAAATATAT
1 ATAATATAT
*
76966577 ACATAA-AAAT
1 --ATAATATAT
*
76966587 ATAATAAAT
1 ATAATATAT
76966596 AT-ATATAT
1 ATAATATAT
*
76966604 ATAATGTAT
1 ATAATATAT
*
76966613 AAAATATAT
1 ATAATATAT
76966622 ATAATA
1 ATAATA
76966628 CATACACATT
Statistics
Matches: 64, Mismatches: 12, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
7 5 0.08
8 22 0.34
9 28 0.44
10 6 0.09
11 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:76966731 original size:23 final size:23
Alignment explanation
Indices: 76966686--76966731 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
76966676 AATACCTCAT
* *
76966686 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
76966709 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
76966732 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:76970103 original size:82 final size:82
Alignment explanation
Indices: 76970016--76970171 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 82
76970006 GAGGATTGCC
* * * *
76970016 ACAAAGGCTTTTCTTTTATATACGC-AGTAAATGCTTTCTGTACAAAGGTTTGT-CACAAAGGCT
1 ACAAAGGCTTTTCTTTTAGATACGCTA-CAAAGGCTTTCTGTACAAAGGTTT-TCCACAAAGACT
76970079 TTCCTTTTAGAGGCTCAGA
64 TTCCTTTTAGAGGCTCAGA
* *
76970098 ACAAAGGCTTTTCTTTTAGATATGCTACAAAGGCTTTCTGTACAGAGGTTTTCCACAAAGACTTT
1 ACAAAGGCTTTTCTTTTAGATACGCTACAAAGGCTTTCTGTACAAAGGTTTTCCACAAAGACTTT
*
76970163 TCTTTTAGA
66 CCTTTTAGA
76970172 TACGCCACAA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 1 0.02
82 63 0.97
83 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (82 bp):
ACAAAGGCTTTTCTTTTAGATACGCTACAAAGGCTTTCTGTACAAAGGTTTTCCACAAAGACTTT
CCTTTTAGAGGCTCAGA
Found at i:76970145 original size:54 final size:54
Alignment explanation
Indices: 76970069--76970182 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
76970059 AAAGGTTTGT
** * * *
76970069 CACAAAGGCTTTCCTTTTAGAGGCTCAGAACAAAGGCTTTTCTTTTAGATATGC
1 CACAAAGGCTTTCCTTACAGAGGCTCACAACAAAGACTTTTCTTTTAGATACGC
* * ** *
76970123 TACAAAGGCTTT-CTGTACAGAGGTTTTCCACAAAGACTTTTCTTTTAGATACGC
1 CACAAAGGCTTTCCT-TACAGAGGCTCACAACAAAGACTTTTCTTTTAGATACGC
76970177 CACAAA
1 CACAAA
76970183 TGATTTTTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (54 bp):
CACAAAGGCTTTCCTTACAGAGGCTCACAACAAAGACTTTTCTTTTAGATACGC
Found at i:76970199 original size:54 final size:54
Alignment explanation
Indices: 76970098--76970223 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
76970088 GAGGCTCAGA
* * * * *
76970098 ACAAAGGCTTTTCTTTTAGATATGCTACAAAGGCTTTCTGTACAGAGGTTTTCC
1 ACAAAGGCTTTTCTTTTAGATACGCCACAAAGGATTTCTATACAGAGGTTTGCC
* * * *
76970152 ACAAAGACTTTTCTTTTAGATACGCCACAAATGATTTTTATAGAGAGGTTTGCC
1 ACAAAGGCTTTTCTTTTAGATACGCCACAAAGGATTTCTATACAGAGGTTTGCC
* *
76970206 ATAAAGGCTTTTCCTTTA
1 ACAAAGGCTTTTCTTTTA
76970224 TAAAGGTTTG
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (54 bp):
ACAAAGGCTTTTCTTTTAGATACGCCACAAAGGATTTCTATACAGAGGTTTGCC
Found at i:76970217 original size:28 final size:28
Alignment explanation
Indices: 76970186--76970326 Score: 99
Period size: 28 Copynumber: 5.0 Consensus size: 28
76970176 CCACAAATGA
*
76970186 TTTTTATAGAGAGGTTTGCCATAAAGGC
1 TTTTTATAGAGAGGTTTGCCAAAAAGGC
* * *
76970214 TTTTCCTTTATAAAGGTTTGCCAAAAAGGC
1 TTTT--TATAGAGAGGTTTGCCAAAAAGGC
* * * * * *
76970244 TATTTAGATAGTGGTTCGCCACAAAGGC
1 TTTTTATAGAGAGGTTTGCCAAAAAGGC
*
76970272 TTTCCTT-TA-AGAGGCTTGCCACAAAA-GC
1 TTT--TTATAGAGAGGTTTGCCA-AAAAGGC
* *
76970300 TTTCTATAGAGAGGTTCGCCAAAAAGG
1 TTTTTATAGAGAGGTTTGCCAAAAAGG
76970327 ATTTCCTTTC
Statistics
Matches: 85, Mismatches: 20, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
26 1 0.01
27 6 0.07
28 49 0.58
29 4 0.05
30 25 0.29
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (28 bp):
TTTTTATAGAGAGGTTTGCCAAAAAGGC
Found at i:76970319 original size:56 final size:55
Alignment explanation
Indices: 76970187--76970359 Score: 177
Period size: 56 Copynumber: 3.1 Consensus size: 55
76970177 CACAAATGAT
* * * *
76970187 TTTTATAGAGAGGTTTGCCATAAAGGCTTTTCCTTTATAAAGGTTTGCCA-AAAAGGC
1 TTTTATAGAGAGGTTCGCCAAAAAGGC-TTTCCTTTA-AGAGGCTTGCCACAAAA-GC
* * * *
76970244 TATTTAGATAGTGGTTCGCCACAAAGGCTTTCCTTTAAGAGGCTTGCCACAAAAGC
1 T-TTTATAGAGAGGTTCGCCAAAAAGGCTTTCCTTTAAGAGGCTTGCCACAAAAGC
* * * * *
76970300 TTTCTATAGAGAGGTTCGCCAAAAAGGATTTCCTTTCAGAGGCTCGCCATAAAATC
1 TTT-TATAGAGAGGTTCGCCAAAAAGGCTTTCCTTTAAGAGGCTTGCCACAAAAGC
76970356 TTTT
1 TTTT
76970360 CTTTGAGATA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
55 3 0.03
56 59 0.61
57 14 0.14
58 21 0.22
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (55 bp):
TTTTATAGAGAGGTTCGCCAAAAAGGCTTTCCTTTAAGAGGCTTGCCACAAAAGC
Found at i:76970340 original size:28 final size:29
Alignment explanation
Indices: 76970256--76970353 Score: 98
Period size: 28 Copynumber: 3.5 Consensus size: 29
76970246 TTTAGATAGT
76970256 GGTTCGCCAC-AAAGGCTTTCCTTTAAGA
1 GGTTCGCCACAAAAGGCTTTCCTTTAAGA
*
76970284 GGCTT-GCCACAAAA-GCTTT-CTATAGAGA
1 GG-TTCGCCACAAAAGGCTTTCCTTTA-AGA
* *
76970312 GGTTCGCCA-AAAAGGATTTCCTTTCAGA
1 GGTTCGCCACAAAAGGCTTTCCTTTAAGA
* *
76970340 GGCTCGCCATAAAA
1 GGTTCGCCACAAAA
76970354 TCTTTTCTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
27 10 0.17
28 36 0.62
29 12 0.21
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (29 bp):
GGTTCGCCACAAAAGGCTTTCCTTTAAGA
Found at i:76976901 original size:2 final size:2
Alignment explanation
Indices: 76976894--76976920 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76976884 ATTCTAGTTC
76976894 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76976921 TTCAAATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76979284 original size:6 final size:6
Alignment explanation
Indices: 76979273--76979306 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
76979263 TTAAACTAAA
76979273 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT
76979307 ATATCAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:76981424 original size:26 final size:27
Alignment explanation
Indices: 76981372--76981424 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
76981362 TTTAATCAAT
**
76981372 AATGGATTTTGAAAATTCAAATTTTAA
1 AATGGATTTTGAAAATTCAAAACTTAA
76981399 AATGGATTTTG-AAA-TCTAAAACTTAA
1 AATGGATTTTGAAAATTC-AAAACTTAA
76981425 CTCTTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 2 0.09
26 10 0.43
27 11 0.48
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (27 bp):
AATGGATTTTGAAAATTCAAAACTTAA
Found at i:76983524 original size:13 final size:13
Alignment explanation
Indices: 76983506--76983530 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76983496 ACCAGAAAGG
76983506 TTTTACTAAAATA
1 TTTTACTAAAATA
76983519 TTTTACTAAAAT
1 TTTTACTAAAAT
76983531 TATGACTCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTACTAAAATA
Found at i:76987047 original size:20 final size:20
Alignment explanation
Indices: 76987022--76987073 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
76987012 CGGGTATGGG
*
76987022 ACACGAGCGTGTCCTAAAAA
1 ACACGAGCGTGTCCCAAAAA
**
76987042 ACACGAGCGTGTCCCAAAGC
1 ACACGAGCGTGTCCCAAAAA
76987062 ACACGAGCGTGT
1 ACACGAGCGTGT
76987074 GCAATTTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.29, G:0.25, T:0.13
Consensus pattern (20 bp):
ACACGAGCGTGTCCCAAAAA
Found at i:76987934 original size:18 final size:19
Alignment explanation
Indices: 76987901--76987940 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
76987891 TTTCCAAGAT
76987901 AGGAACTTAGTGAGTTGTCA
1 AGGAACTTAGTGAGTTGT-A
76987921 AGGAA-TTA-TGAGTTGTA
1 AGGAACTTAGTGAGTTGTA
76987938 AGG
1 AGG
76987941 GATGTCGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 8 0.40
19 3 0.15
20 5 0.25
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.30
Consensus pattern (19 bp):
AGGAACTTAGTGAGTTGTA
Found at i:76989034 original size:26 final size:26
Alignment explanation
Indices: 76988978--76989046 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
76988968 TATATAAGTG
* ***
76988978 AGCCTTTGTGGATATCTCTGAATGGA
1 AGCCTTTGTGGCTATCTCTGAAAAAA
*
76989004 CGCCTTTGTGGCTATCTCTGAAAAAA
1 AGCCTTTGTGGCTATCTCTGAAAAAA
*
76989030 AGCCTTTGTGGCAATCT
1 AGCCTTTGTGGCTATCT
76989047 TTATTATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (26 bp):
AGCCTTTGTGGCTATCTCTGAAAAAA
Found at i:76989125 original size:28 final size:28
Alignment explanation
Indices: 76989006--76989212 Score: 122
Period size: 28 Copynumber: 7.4 Consensus size: 28
76988996 TGAATGGACG
76989006 CCTTTGTGGCTATCTCTGA--AAA--AAA
1 CCTTTGTGGCTATCTCT-ATTAAAGGAAA
* * * *
76989031 GCCTTTGTGGCAATCTTTATTATAAAGACA
1 -CCTTTGTGGCTATCTCTATTA-AAGGAAA
* * * * * **
76989061 CATTTGTAGCAACCTCTGTTAAATAAAA
1 CCTTTGTGGCTATCTCTATTAAAGGAAA
* * *
76989089 GCCTTTGTGGATGTTTCTATTAAAGGAAA
1 -CCTTTGTGGCTATCTCTATTAAAGGAAA
* **
76989118 CCTTTGTGGCTATCTCTA--AATGGATG
1 CCTTTGTGGCTATCTCTATTAAAGGAAA
* * *
76989144 TCTTTGTGGCTATCTTTATTAAAGGAAG
1 CCTTTGTGGCTATCTCTATTAAAGGAAA
*
76989172 CCTTTGTGG-TGATCTCTATTAAATGAAA
1 CCTTTGTGGCT-ATCTCTATTAAAGGAAA
76989200 GCCTTTGTGGCTA
1 -CCTTTGTGGCTA
76989213 ACTCAACTAA
Statistics
Matches: 135, Mismatches: 35, Indels: 19
0.71 0.19 0.10
Matches are distributed among these distances:
25 1 0.01
26 36 0.27
27 2 0.01
28 49 0.36
29 44 0.33
30 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (28 bp):
CCTTTGTGGCTATCTCTATTAAAGGAAA
Found at i:76989223 original size:29 final size:29
Alignment explanation
Indices: 76989169--76989227 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
76989159 TTATTAAAGG
* * *
76989169 AAGCCTTTGTGGTGATCTCTATTAAATGA
1 AAGCCTTTGTGGTGAACTCAACTAAATGA
76989198 AAGCCTTTGTGGCT-AACTCAACTAAATGA
1 AAGCCTTTGTGG-TGAACTCAACTAAATGA
76989227 A
1 A
76989228 TGTTTTGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (29 bp):
AAGCCTTTGTGGTGAACTCAACTAAATGA
Found at i:76989251 original size:28 final size:29
Alignment explanation
Indices: 76989160--76989251 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
76989150 TGGCTATCTT
* ** **
76989160 TATTAAA-GGAAGCCTTTGTGGTGATCTC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
* *
76989188 TATTAAATGAAAGCCTTTGTGGCTAACTC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
* * * *
76989217 AACTAAATGAATG-TTTTGTGGCAAAATC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
76989245 TATTAAA
1 TATTAAA
76989252 AGGACGCCTT
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
28 24 0.47
29 27 0.53
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (29 bp):
TATTAAATGAAAGCCTTTGTGGCAAAATC
Found at i:76989963 original size:14 final size:14
Alignment explanation
Indices: 76989927--76989965 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
76989917 TTGTTTCACT
*
76989927 GAAAATGACTTTCG
1 GAAAATGATTTTCG
* *
76989941 AAAAATGATTTTTG
1 GAAAATGATTTTCG
76989955 GAAAATGATTT
1 GAAAATGATTT
76989966 ACTTTTCTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (14 bp):
GAAAATGATTTTCG
Found at i:76990452 original size:15 final size:15
Alignment explanation
Indices: 76990432--76990483 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
76990422 ACTACAAAAC
76990432 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
76990447 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
76990466 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
76990481 ATT
1 ATT
76990484 AATTTTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:76990587 original size:22 final size:22
Alignment explanation
Indices: 76990561--76990602 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
76990551 ATATTAAATA
76990561 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
76990583 ATTTATTATATTAATAATTT
1 ATTTATTAAAATAATAATTT
76990603 GTTATAAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:76994663 original size:34 final size:34
Alignment explanation
Indices: 76994625--76994700 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
76994615 AAGCATGACT
* * *
76994625 TTTGCTAC-GAAGTTGATCTGTTATAAGCATATTG
1 TTTGCTACTGAA-TCGAACTGTTATAAACATATTG
* *
76994659 TTTGCCACTGAATCGAACTGTTATAAACTTATTG
1 TTTGCTACTGAATCGAACTGTTATAAACATATTG
*
76994693 GTTGCTAC
1 TTTGCTAC
76994701 CGTATTGTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (34 bp):
TTTGCTACTGAATCGAACTGTTATAAACATATTG
Found at i:76996867 original size:2 final size:2
Alignment explanation
Indices: 76996860--76996896 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
76996850 TATTAACCTA
76996860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76996897 CACACTATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76998099 original size:14 final size:15
Alignment explanation
Indices: 76998080--76998108 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76998070 ATTGAATCAC
76998080 TAAAAA-TCTAAATA
1 TAAAAATTCTAAATA
76998094 TAAAAATTCTAAATA
1 TAAAAATTCTAAATA
76998109 AATCATCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAAAATTCTAAATA
Found at i:76999500 original size:26 final size:26
Alignment explanation
Indices: 76999469--76999532 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
76999459 ATACAAGGAG
76999469 CAAATGAAAATTCGTAGTGGTAAGGT
1 CAAATGAAAATTCGTAGTGGTAAGGT
76999495 CAAATGAAAATTCGTAGTGGTAAGGT
1 CAAATGAAAATTCGTAGTGGTAAGGT
*
76999521 CAAAAGAAAATT
1 CAAATGAAAATT
76999533 TGCTATAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (26 bp):
CAAATGAAAATTCGTAGTGGTAAGGT
Found at i:77001736 original size:12 final size:13
Alignment explanation
Indices: 77001710--77001753 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 13
77001700 ATGTTATTTT
77001710 ATAAGTTAAATAATA
1 ATAAG-TAAATAA-A
77001725 ATATAGTAAATAAA
1 ATA-AGTAAATAAA
77001739 ATAAGTAAAATAAA
1 ATAAGT-AAATAAA
77001753 A
1 A
77001754 AGTATCATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.11
14 12 0.44
15 10 0.37
16 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (13 bp):
ATAAGTAAATAAA
Found at i:77003001 original size:131 final size:131
Alignment explanation
Indices: 77002767--77003029 Score: 517
Period size: 131 Copynumber: 2.0 Consensus size: 131
77002757 AGTGTAAAGC
77002767 CTTCAGGCTCGGCACTTGGTGCCAAGGTGTGTTCTAGAGGGATGTTAGCCTATGGGCTAGGCACT
1 CTTCAGGCTCGGCACTTGGTGCCAAGGTGTGTTCTAGAGGGATGTTAGCCTATGGGCTAGGCACT
77002832 TGGTGTAACACTCCTTACTCAAGTCCAAGGCCGGGACTGGGCACGAGGTATTACTTGACTTAAAC
66 TGGTGTAACACTCCTTACTCAAGTCCAAGGCCGGGACTGGGCACGAGGTATTACTTGACTTAAAC
77002897 A
131 A
77002898 CTTCAGGCTCGGCACTTGGTGCCAAGGTGTGTTCTAGAGGGATGTTAGCCTATGGGCTAGGCACT
1 CTTCAGGCTCGGCACTTGGTGCCAAGGTGTGTTCTAGAGGGATGTTAGCCTATGGGCTAGGCACT
*
77002963 TGGTGTAACACTCCTTACTCAAGTCCGAGGCCGGGACTGGGCACGAGGTATTACTTGACTTAAAC
66 TGGTGTAACACTCCTTACTCAAGTCCAAGGCCGGGACTGGGCACGAGGTATTACTTGACTTAAAC
77003028 A
131 A
77003029 C
1 C
77003030 ATGCATACAA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (131 bp):
CTTCAGGCTCGGCACTTGGTGCCAAGGTGTGTTCTAGAGGGATGTTAGCCTATGGGCTAGGCACT
TGGTGTAACACTCCTTACTCAAGTCCAAGGCCGGGACTGGGCACGAGGTATTACTTGACTTAAAC
A
Found at i:77008264 original size:23 final size:22
Alignment explanation
Indices: 77008237--77008279 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
77008227 ACAGGTTACA
77008237 ACGTCATGACGAGGAGGTTTCCG
1 ACGTCATGACGAGGA-GTTTCCG
*
77008260 ACGTCATGATGAGGAGTTTC
1 ACGTCATGACGAGGAGTTTC
77008280 TAGATGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (22 bp):
ACGTCATGACGAGGAGTTTCCG
Found at i:77008288 original size:23 final size:23
Alignment explanation
Indices: 77008229--77008294 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
77008219 CACCTCCAAC
*
77008229 AGGTTACA-ACGTCATGACGAGG
1 AGGTTTCAGACGTCATGACGAGG
* *
77008251 AGGTTTCCGACGTCATGATGAGG
1 AGGTTTCAGACGTCATGACGAGG
* *
77008274 A-GTTTCTAGATGTCATAACGA
1 AGGTTTC-AGACGTCATGACGA
77008295 TGGAAGACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
22 11 0.31
23 24 0.69
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (23 bp):
AGGTTTCAGACGTCATGACGAGG
Found at i:77008388 original size:24 final size:24
Alignment explanation
Indices: 77008354--77008413 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
77008344 GTTCCCACAT
*
77008354 AAATCTGTTATCTTTTCCCAGTTA
1 AAATCTATTATCTTTTCCCAGTTA
*
77008378 AAATCTATTATCTTTTCCTAGTTA
1 AAATCTATTATCTTTTCCCAGTTA
*
77008402 AACTCTAATTAT
1 AAATCT-ATTAT
77008414 TCTAGAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 27 0.84
25 5 0.16
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (24 bp):
AAATCTATTATCTTTTCCCAGTTA
Found at i:77009676 original size:23 final size:23
Alignment explanation
Indices: 77009624--77009666 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
77009614 TATTTAAATT
77009624 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAATTATAAAAATATA
77009646 TAAATATTAA-TATAAAAATAT
1 TAAATATTAATTATAAAAATAT
77009667 TTTATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAATATTAATTATAAAAATATA
Found at i:77010031 original size:18 final size:18
Alignment explanation
Indices: 77010010--77010045 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77010000 AACATTTCAA
*
77010010 TTAAAATTTATGTAAAAT
1 TTAAAAATTATGTAAAAT
*
77010028 TTAAAAATTATTTAAAAT
1 TTAAAAATTATGTAAAAT
77010046 ATAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TTAAAAATTATGTAAAAT
Found at i:77010834 original size:33 final size:33
Alignment explanation
Indices: 77010792--77010867 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
77010782 ATTTGCGTTT
*
77010792 TGATTGAATTCTCTAGAAATGTGCTAAATATTC
1 TGATTGAATTCTCTAAAAATGTGCTAAATATTC
77010825 TGATTGAATTCTCTAAAAATGTGCTAAATATTC
1 TGATTGAATTCTCTAAAAATGTGCTAAATATTC
77010858 TG-TTAGAATT
1 TGATT-GAATT
77010868 GAGTAATTCG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
32 2 0.05
33 39 0.95
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (33 bp):
TGATTGAATTCTCTAAAAATGTGCTAAATATTC
Found at i:77016699 original size:28 final size:28
Alignment explanation
Indices: 77016668--77016752 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 28
77016658 AGTATCGGGG
*
77016668 ATGGCACTTAGTGTGTGATACATCCAGA
1 ATGGCACTTAGTGTGAGATACATCCAGA
*
77016696 ATGGCACTTAGTGTGAGAAGTA-A-CGAGGA
1 ATGGCACTTAGTGTGAG-A-TACATCCA-GA
* *
77016725 A-GGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGAGATACATCCAGA
77016752 A
1 A
77016753 CAACACTTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 5 0.11
28 34 0.72
29 5 0.11
30 2 0.04
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.22
Consensus pattern (28 bp):
ATGGCACTTAGTGTGAGATACATCCAGA
Found at i:77016760 original size:56 final size:56
Alignment explanation
Indices: 77016656--77016765 Score: 148
Period size: 56 Copynumber: 2.0 Consensus size: 56
77016646 CTTAACGTAC
* * * * * ***
77016656 GAAGTATCGGGGATGGCACTTAGTGTGTGATACATCCAGAATGGCACTTAGTGTGA
1 GAAGTAACGAGGAAGGCACTTAGTGTGCGAAACATCCAGAACAACACTTAGTGTGA
77016712 GAAGTAACGAGGAAGGCACTTAGTGTGCGAAACATCCAGAACAACACTTAGTGT
1 GAAGTAACGAGGAAGGCACTTAGTGTGCGAAACATCCAGAACAACACTTAGTGT
77016766 TCAAGGTATC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (56 bp):
GAAGTAACGAGGAAGGCACTTAGTGTGCGAAACATCCAGAACAACACTTAGTGTGA
Found at i:77016933 original size:32 final size:32
Alignment explanation
Indices: 77016845--77016933 Score: 133
Period size: 32 Copynumber: 2.8 Consensus size: 32
77016835 TGAATATGAG
* * * *
77016845 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
77016877 ATTGGTACAATATGGTACAGGTATGTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
77016909 ATTGGTACAATATGGTACATGTATG
1 ATTGGTACAATATGGTACAGGTATG
77016934 CACAGAGATT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGTACGGAA
Found at i:77028087 original size:8 final size:8
Alignment explanation
Indices: 77028076--77028120 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
77028066 GATCAACGCT
*
77028076 TTATTTTA
1 TTATTATA
77028084 TTATTATA
1 TTATTATA
77028092 TTCTATTATA
1 -T-TATTATA
*
77028102 TTAATATA
1 TTATTATA
77028110 TTATTATA
1 TTATTATA
77028118 TTA
1 TTA
77028121 ATTTCTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 23 0.72
9 2 0.06
10 7 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:77028108 original size:16 final size:16
Alignment explanation
Indices: 77028085--77028126 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
77028075 TTTATTTTAT
77028085 TATT-ATATTCTATTA
1 TATTAATATTCTATTA
77028100 TATTAATATAT-TATTA
1 TATTAATAT-TCTATTA
77028116 TATTAAT-TTCT
1 TATTAATATTCT
77028127 TAAATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.04
15 6 0.25
16 16 0.67
17 1 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTAATATTCTATTA
Found at i:77033533 original size:21 final size:21
Alignment explanation
Indices: 77033489--77033542 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
77033479 AAACAGTATC
* *
77033489 ACACGCCCATGTGGTTTCAGG
1 ACACGCCCATGTGGTCTCACG
77033510 ACACGCCCATGT-GTCTCTACG
1 ACACGCCCATGTGGTCTC-ACG
*
77033531 ACACGCACATGT
1 ACACGCCCATGT
77033543 TGTCACCCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (21 bp):
ACACGCCCATGTGGTCTCACG
Found at i:77035684 original size:5 final size:5
Alignment explanation
Indices: 77035668--77035706 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
77035658 TTTATTTTAT
77035668 TATTA TATTA TATTA TATTA -A-TA TATTA TTATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA
77035707 ATTTCTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 22 0.71
6 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Done.