Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 251 of 425
Found at i:77038705 original size:40 final size:40
Alignment explanation
Indices: 77038656--77038861 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
77038646 TCTTCGGAAT
* *
77038656 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
77038695 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * *
77038735 TTAG-CCGGATATGACAACT-GCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
77038773 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
77038813 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
77038853 TTAGCCCGG
1 TTAGCCCGG
77038862 GTATCATTCA
Statistics
Matches: 141, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
38 22 0.16
39 25 0.18
40 94 0.67
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:77038781 original size:78 final size:75
Alignment explanation
Indices: 77038647--77038861 Score: 198
Period size: 78 Copynumber: 2.7 Consensus size: 75
77038637 AACCGAGCTT
* * * * * **
77038647 CTTCGGAATTTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT-
1 CTTCGGGACTTAGCCGGATAT-A-CAC-TGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATC
*
77038711 ATCTTGCACAAATGC
62 A-CTAGCACAAATGC
*
77038726 CTTCGGGTCTTAGCCGGATATGACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCA
1 CTTCGGGACTTAGCCGGATAT-AC-ACTGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATCA
*
77038791 CTAGCATAAATGC
63 CTAGCACAAATGC
* *
77038804 CTTCGGGACTTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAG-CCGGATATA--CACT-GCA-CAATGCCTTCGGGTCTTAGCCCGG
77038862 GTATCATTCA
Statistics
Matches: 114, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
78 53 0.46
79 35 0.31
80 26 0.23
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (75 bp):
CTTCGGGACTTAGCCGGATATACACTGCACAATGCCTTCGGGTCTTAGCCCGGATATAATCACTA
GCACAAATGC
Found at i:77045966 original size:40 final size:40
Alignment explanation
Indices: 77045858--77046067 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77045848 CGGGATTTAA
* * * * *
77045858 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77045898 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77045938 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77045978 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77046018 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77046058 CCGGATATAT
1 CCGGATATAT
77046068 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77054097 original size:40 final size:40
Alignment explanation
Indices: 77053989--77054158 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
77053979 CGGGATTTAA
* * * * *
77053989 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77054029 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77054069 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77054109 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77054149 CCGGATATAT
1 CCGGATATAT
77054159 TCCAATGTTC
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77058311 original size:28 final size:28
Alignment explanation
Indices: 77058268--77058346 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
77058258 AACATGTTAG
*
77058268 AAAAGAATAGTCTTTGTGGCAAACTCTA
1 AAAAGAATAGTATTTGTGGCAAACTCTA
* * *
77058296 AAAAGATTAGTATTTGTGGCGAACTCTG
1 AAAAGAATAGTATTTGTGGCAAACTCTA
***
77058324 AAAAGAATAACCTTTGTGGCAAA
1 AAAAGAATAGTATTTGTGGCAAA
77058347 TTATACATAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (28 bp):
AAAAGAATAGTATTTGTGGCAAACTCTA
Found at i:77059426 original size:42 final size:42
Alignment explanation
Indices: 77059374--77059483 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 42
77059364 AGATTACGTT
* **
77059374 TAAGACCATATTTGGGATATGGCATCGATATGAGATTTCATG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGATCCCATG
* * * *
77059416 TAAGATCATATCTGGGCTATTAGCATCGATATGAGATCCCGTG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCATG
77059459 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
77059484 TGGTATGGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 21 0.37
43 36 0.63
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGATCCCATG
Found at i:77061034 original size:22 final size:21
Alignment explanation
Indices: 77060991--77061034 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
77060981 CTAAGTTTAT
*
77060991 TTTGAATTTGAGTTACTGTTA
1 TTTGAATTTGAGTTACTATTA
77061012 TTTGAATTATGAGATT-CTATTA
1 TTTGAATT-TGAG-TTACTATTA
77061034 T
1 T
77061035 AGCATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 10 0.50
23 2 0.10
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (21 bp):
TTTGAATTTGAGTTACTATTA
Found at i:77062207 original size:15 final size:15
Alignment explanation
Indices: 77062187--77062216 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77062177 AAACCAAAAG
*
77062187 AATGAAATAGTTTCC
1 AATGAAACAGTTTCC
77062202 AATGAAACAGTTTCC
1 AATGAAACAGTTTCC
77062217 CTATCACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (15 bp):
AATGAAACAGTTTCC
Found at i:77067816 original size:46 final size:45
Alignment explanation
Indices: 77067731--77067849 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 45
77067721 TCTCGTAGTT
* *
77067731 GATGCATGTCTC-AGACATGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCATGTC-CGA-ACATGTCTTACACTAACCTACGTCTCGAGGCC
*
77067777 GATGCATGTCCCGAACATGTCTTACACTAACACTA-GTCTCGATGCC
1 GATGCATGT-CCGAACATGTCTTACACTAAC-CTACGTCTCGAGGCC
* *
77067823 TATGCCATGT-CGGACATCGTCTTACAC
1 GATG-CATGTCCGAACAT-GTCTTACAC
77067850 AGGCTCTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
45 6 0.10
46 48 0.76
47 9 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCGAACATGTCTTACACTAACCTACGTCTCGAGGCC
Found at i:77074819 original size:46 final size:45
Alignment explanation
Indices: 77074731--77074854 Score: 117
Period size: 46 Copynumber: 2.7 Consensus size: 45
77074721 TCATCTCGTA
*
77074731 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-GTCTCGAG
* * *
77074777 GCCGATGCATGTCCC-GAACGTGTTTTACACTAGCACTT-GTCTCGAT
1 GCCGATGCATGTCCCAG-ACATGTCTTACACTAG--CTTAGTCTCGAG
* **
77074823 ACATATGCCATGTCCCAGACATTGTCTTACAC
1 GCCGATG-CATGTCCCAGACA-TGTCTTACAC
77074855 AGGCTTTCAT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.02
46 39 0.62
47 10 0.16
48 13 0.21
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAGTCTCGAG
Found at i:77080770 original size:19 final size:20
Alignment explanation
Indices: 77080748--77080788 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
77080738 GGATAAAGTT
*
77080748 AAATTAATTAA-CTAAATGC
1 AAATGAATTAACCTAAATGC
77080767 AAATGAATTAACCTAAATGC
1 AAATGAATTAACCTAAATGC
77080787 AA
1 AA
77080789 TAAAATGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (20 bp):
AAATGAATTAACCTAAATGC
Found at i:77086088 original size:21 final size:22
Alignment explanation
Indices: 77086053--77086094 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
77086043 AGGAGGAAAT
*
77086053 ACTGGTAGTTTTATCTACAAAC
1 ACTGGTAGTTTTATCCACAAAC
*
77086075 ACTGGTTG-TTTATCCACAAA
1 ACTGGTAGTTTTATCCACAAA
77086095 TTATTGGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (22 bp):
ACTGGTAGTTTTATCCACAAAC
Found at i:77087812 original size:40 final size:40
Alignment explanation
Indices: 77087763--77087970 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
77087753 TCTTCGGAAT
* *
77087763 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
77087802 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * * *
77087842 TTAGCCCGGATATGACAACTCGCACGAATACCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
77087882 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
77087922 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
77087962 TTAGCCCGG
1 TTAGCCCGG
77087971 GTATCATTCA
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 5 0.04
40 134 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:77101379 original size:47 final size:47
Alignment explanation
Indices: 77101310--77101404 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
77101300 TGCCTTCTGG
*
77101310 ACTATTGCAGCTAGTTACGATTGTAACAGCTCGGTTTTAGCTAAATT
1 ACTATTGCAGCTAGTTACGATTGTAACAGCTCGATTTTAGCTAAATT
77101357 ACTATTGCAGCTAGTTACGATTGTAACAGCTCGATTTTAGCTAAATT
1 ACTATTGCAGCTAGTTACGATTGTAACAGCTCGATTTTAGCTAAATT
77101404 A
1 A
77101405 GAATAGTGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (47 bp):
ACTATTGCAGCTAGTTACGATTGTAACAGCTCGATTTTAGCTAAATT
Found at i:77107748 original size:42 final size:42
Alignment explanation
Indices: 77107652--77107759 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
77107642 TTGAGCACAA
* * *
77107652 GGGCATAGACACGGGCGTGTATCTCAGCCGTGTGTACCACAC
1 GGGCAAAGACACGGGCGTGTGTCTCAGCCGTGTGTACCAAAC
* *
77107694 GGGCAAAGACACGAGCGTGTGTCTCAGCCGTGTGTGCCAAAC
1 GGGCAAAGACACGGGCGTGTGTCTCAGCCGTGTGTACCAAAC
* *
77107736 GGTC-TAGAACACGGGCGTGTGTCT
1 GGGCAAAG-ACACGGGCGTGTGTCT
77107760 TGGTTGTATG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 2 0.04
42 55 0.96
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.19
Consensus pattern (42 bp):
GGGCAAAGACACGGGCGTGTGTCTCAGCCGTGTGTACCAAAC
Found at i:77108126 original size:21 final size:21
Alignment explanation
Indices: 77108077--77108126 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
77108067 GATAAATGAA
*
77108077 TAGTAATTTATATAAATTATT
1 TAGTAATGTATATAAATTATT
* *
77108098 T-GTAAATGTATATGAATTTTT
1 TAGT-AATGTATATAAATTATT
77108119 TAGTAATG
1 TAGTAATG
77108127 CTCCGTAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
TAGTAATGTATATAAATTATT
Found at i:77112400 original size:22 final size:21
Alignment explanation
Indices: 77112352--77112430 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 21
77112342 TAGATCACTG
**
77112352 GAGCTTACCATTTCAGCTCATA
1 GAGCTTACTGTTT-AGCTCATA
77112374 TGAGCTTACTGTTTAGCTCAATA
1 -GAGCTTACTGTTTAGCTC-ATA
* *
77112397 GAGCTTATTGTTCAGCTCGATA
1 GAGCTTACTGTTTAGCTC-ATA
77112419 GAGCTTACTGTT
1 GAGCTTACTGTT
77112431 CATCAACTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
22 35 0.71
23 14 0.29
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (21 bp):
GAGCTTACTGTTTAGCTCATA
Found at i:77112431 original size:22 final size:21
Alignment explanation
Indices: 77112363--77112432 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 21
77112353 AGCTTACCAT
77112363 TTCAGCTCATATGAGCTTACTG
1 TTCAGCTCATA-GAGCTTACTG
* *
77112385 TTTAGCTCAATAGAGCTTATTG
1 TTCAGCTC-ATAGAGCTTACTG
77112407 TTCAGCTCGATAGAGCTTACTG
1 TTCAGCTC-ATAGAGCTTACTG
77112429 TTCA
1 TTCA
77112433 TCAACTCAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 39 0.93
23 3 0.07
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (21 bp):
TTCAGCTCATAGAGCTTACTG
Found at i:77114309 original size:13 final size:13
Alignment explanation
Indices: 77114291--77114317 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77114281 ATAAAGTTTG
77114291 TAAAAATTGCCCA
1 TAAAAATTGCCCA
77114304 TAAAAATTGCCCA
1 TAAAAATTGCCCA
77114317 T
1 T
77114318 TAATGATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26
Consensus pattern (13 bp):
TAAAAATTGCCCA
Found at i:77121174 original size:42 final size:42
Alignment explanation
Indices: 77121117--77121217 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
77121107 GTGTAGGTTT
*
77121117 CACACGGCCA-AGACACACGCCGTGT-TCTAGGCCGTGTAGCA
1 CACACGG-CAGAGACACACGCCGTGTGTCTAGGCCATGTAGCA
* * * *
77121158 CATACGAGCAGAGACAC-GGGCGTGTGTCTTGGCCATGTAGCA
1 CACACG-GCAGAGACACACGCCGTGTGTCTAGGCCATGTAGCA
*
77121200 CACACGGCTGAGACACAC
1 CACACGGCAGAGACACAC
77121218 ACCCGTGTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
41 22 0.46
42 26 0.54
ACGTcount: A:0.26, C:0.31, G:0.29, T:0.15
Consensus pattern (42 bp):
CACACGGCAGAGACACACGCCGTGTGTCTAGGCCATGTAGCA
Found at i:77133271 original size:40 final size:39
Alignment explanation
Indices: 77133188--77133379 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
77133178 TTGAATGATG
* * * * *
77133188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
77133228 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
77133268 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
77133307 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
77133348 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
77133380 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:77133333 original size:79 final size:81
Alignment explanation
Indices: 77133188--77133379 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
77133178 TTGAATGATG
* * * *
77133188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
77133252 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
77133268 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
77133331 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
77133348 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77133380 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:77133394 original size:79 final size:77
Alignment explanation
Indices: 77133188--77133405 Score: 206
Period size: 79 Copynumber: 2.7 Consensus size: 77
77133178 TTGAATGATG
* * * * *
77133188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
77133252 CGTGCGAGTTAATAAA
62 CGTGCGAGTTAATAAA
* * * *
77133268 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
*
77133333 TGCGAGTTACTATAA
64 TGCGAGTTAATA-AA
** ** *
77133348 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAGG
77133406 TACGTGATTC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 65 0.56
80 50 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:77141283 original size:39 final size:40
Alignment explanation
Indices: 77141188--77141378 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
77141178 TTGAATGATG
* * *
77141188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAT--A
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTA-ATAAA
* *
77141227 TCCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTAATAAA
* *
77141267 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
77141306 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
77141347 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
77141379 CGTTATATCC
Statistics
Matches: 129, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 55 0.43
40 70 0.54
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:77141323 original size:79 final size:80
Alignment explanation
Indices: 77141188--77141378 Score: 221
Period size: 79 Copynumber: 2.4 Consensus size: 80
77141178 TTGAATGATG
* * * *
77141188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAGGCGTTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACAAACCCGGACTAAGATCCGAAGGCATTC
77141252 GTGCGAGTTAATA-AA
65 GTGCGAGTTAATATAA
* **
77141267 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC-AAACCCGGACTAAGAT-CCGAAGGCATT
*
77141330 CGTGCGAGTTACTATAA
64 CGTGCGAGTTAATATAA
** *
77141347 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77141379 CGTTATATCC
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 15 0.16
79 59 0.61
80 22 0.23
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATATAA
Found at i:77141402 original size:79 final size:79
Alignment explanation
Indices: 77141239--77141404 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
77141229 CGGACTAAGA
* * *
77141239 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
77141304 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** **
77141318 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCAC
* *
77141382 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
77141397 TCCGAAGG
1 TCCGAAGG
77141405 TACGTGATTC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 45 0.62
80 27 0.38
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:77149290 original size:39 final size:40
Alignment explanation
Indices: 77149195--77149384 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
77149185 TTGAATGATG
* * *
77149195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAT--A
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTA-ATAAA
* *
77149234 TCCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTAATAAA
* *
77149274 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
77149313 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATA-AA
** *
77149354 -CCGGGCTTTGTCCCGAAGGCATT-GAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
77149385 CGTTATATCC
Statistics
Matches: 129, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 62 0.48
40 63 0.49
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:77149330 original size:79 final size:80
Alignment explanation
Indices: 77149195--77149384 Score: 212
Period size: 79 Copynumber: 2.4 Consensus size: 80
77149185 TTGAATGATG
* * * *
77149195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAGGCGTTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACAAACCCGGACTAAGATCCGAAGGCATTC
77149259 GTGCGAGTTAATA-AA
65 GTGCGAGTTAATATAA
* **
77149274 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC-AAACCCGGACTAAGAT-CCGAAGGCATT
*
77149337 CGTGCGAGTTACTATAA
64 CGTGCGAGTTAATATAA
** *
77149354 -CCGGGCTTTGTCCCGAAGGCA-TTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77149385 CGTTATATCC
Statistics
Matches: 95, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 15 0.16
79 68 0.72
80 12 0.13
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATATAA
Found at i:77157964 original size:51 final size:51
Alignment explanation
Indices: 77157909--77158059 Score: 203
Period size: 51 Copynumber: 3.0 Consensus size: 51
77157899 TACGTACATC
* * * *
77157909 ATACCAGACTGTTATAGCCTCTTTTATCTATGGTTTTACGCCATATACCTT
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
* * *
77157960 ATACCAGACTGTCATAGCTTGTTTCATCTATAATCTTACGCCATATACCTT
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
* * * *
77158011 ATACTAGACTATCATATCCTCTTTCATCTATGATCTTATGCCATATACC
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACC
77158060 ACTGTCATGG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.26, C:0.25, G:0.09, T:0.39
Consensus pattern (51 bp):
ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
Found at i:77162806 original size:40 final size:40
Alignment explanation
Indices: 77162748--77162915 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
77162738 CAATTGAATG
* *
77162748 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
77162789 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
77162828 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
77162868 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
77162908 ATATCCGG
1 ATATCCGG
77162916 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:77162886 original size:80 final size:79
Alignment explanation
Indices: 77162748--77162915 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
77162738 CAATTGAATG
* * *
77162748 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
77162813 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
77162828 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
77162892 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
77162908 ATATCCGG
1 ATATCCGG
77162916 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:77170812 original size:40 final size:40
Alignment explanation
Indices: 77170754--77170921 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
77170744 CAATTGAATG
* *
77170754 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
77170795 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
77170834 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
77170874 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
77170914 ATATCCGG
1 ATATCCGG
77170922 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:77170892 original size:80 final size:79
Alignment explanation
Indices: 77170754--77170921 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
77170744 CAATTGAATG
* * *
77170754 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
77170819 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
77170834 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
77170898 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
77170914 ATATCCGG
1 ATATCCGG
77170922 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:77180590 original size:14 final size:15
Alignment explanation
Indices: 77180571--77180599 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77180561 TTATATAATA
77180571 ATAAATAT-TTTTAT
1 ATAAATATATTTTAT
77180585 ATAAATATATTTTAT
1 ATAAATATATTTTAT
77180600 TAATTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATAAATATATTTTAT
Found at i:77181567 original size:12 final size:12
Alignment explanation
Indices: 77181550--77181574 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77181540 CACTCAGCAG
77181550 GACATATGGCAA
1 GACATATGGCAA
77181562 GACATATGGCAA
1 GACATATGGCAA
77181574 G
1 G
77181575 TTGTTGGACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (12 bp):
GACATATGGCAA
Found at i:77186217 original size:20 final size:20
Alignment explanation
Indices: 77186192--77186231 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77186182 TGTTTTTCAA
77186192 GTTTCATCCTTTTTCATTTT
1 GTTTCATCCTTTTTCATTTT
77186212 GTTTCATCCTTTTTCATTTT
1 GTTTCATCCTTTTTCATTTT
77186232 CTTATAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.05, T:0.65
Consensus pattern (20 bp):
GTTTCATCCTTTTTCATTTT
Found at i:77191270 original size:43 final size:43
Alignment explanation
Indices: 77191182--77191346 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 43
77191172 AATGTGATAT
* * * *
77191182 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTG-A-AATAATA
* * *
77191225 TCGGGCTTCGGGCTTAGCAGGCTATAATACTGGTGAGATAATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAATAATA
* * * *
77191268 TCGGGCTTTGGGCCTAGCAAGCTATAATGCCGGTGAAATGATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAATAATA
** *
77191311 TCGGGCTTCAAGCCTAGCAGGCGA-AATGCTGGTGAA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAA
77191347 TGAGTCCAGA
Statistics
Matches: 100, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 11 0.11
43 68 0.68
44 15 0.15
45 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (43 bp):
TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAATAATA
Found at i:77202895 original size:40 final size:40
Alignment explanation
Indices: 77202826--77203001 Score: 241
Period size: 40 Copynumber: 4.4 Consensus size: 40
77202816 ACCAAGTACA
* * * *
77202826 TTCGGGATTTAG-CCAGATATAGCT-ACTCGCTCAAATCCC
1 TTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCC
77202865 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
* *
77202905 TTCGGGACTTAGCCCAGATATAGTAACCCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
* *
77202945 TTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCC
77202985 TTCGGGACTTAGCCCGG
1 TTCGGGACTTAGCCCGG
77203002 TTACCATCCG
Statistics
Matches: 124, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.10
40 111 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
Found at i:77205481 original size:25 final size:25
Alignment explanation
Indices: 77205446--77205531 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
77205436 TAGCTTCCTA
*
77205446 AAACAATTAAAATTAAATTATATCT
1 AAACAAATAAAATTAAATTATATCT
*
77205471 AAACAAATAAAA--AAATGACT-TCT
1 AAACAAATAAAATTAAATTA-TATCT
* * *
77205494 AAAAAAACCAAAATTAAATTATATAT
1 AAACAAA-TAAAATTAAATTATATCT
*
77205520 TAACAAATAAAA
1 AAACAAATAAAA
77205532 CAAATGAAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
23 14 0.30
24 5 0.11
25 16 0.34
26 12 0.26
ACGTcount: A:0.63, C:0.09, G:0.01, T:0.27
Consensus pattern (25 bp):
AAACAAATAAAATTAAATTATATCT
Found at i:77205496 original size:49 final size:50
Alignment explanation
Indices: 77205427--77205538 Score: 145
Period size: 49 Copynumber: 2.2 Consensus size: 50
77205417 AAGAGGAATA
* * ** *
77205427 AAAACAAATTAGCTTCCTAAAACAATTAAAATTAAATTATATCTAAACAAAT
1 AAAACAAATGA-CTT-CTAAAAAAACCAAAATTAAATTATATATAAACAAAT
*
77205479 AAAA-AAATGACTTCTAAAAAAACCAAAATTAAATTATATATTAACAAAT
1 AAAACAAATGACTTCTAAAAAAACCAAAATTAAATTATATATAAACAAAT
77205528 AAAACAAATGA
1 AAAACAAATGA
77205539 AATTCCTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
49 35 0.66
50 9 0.17
51 5 0.09
52 4 0.08
ACGTcount: A:0.60, C:0.12, G:0.03, T:0.26
Consensus pattern (50 bp):
AAAACAAATGACTTCTAAAAAAACCAAAATTAAATTATATATAAACAAAT
Found at i:77205563 original size:51 final size:49
Alignment explanation
Indices: 77205440--77205563 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 49
77205430 ACAAATTAGC
* *
77205440 TTCCTAAAACAATTAAAATTAAATTATATCTAAACAAATAAAAAAATGAC
1 TTCCTAAAA-AATTAAAATTAAATTATATATAAACAAATAAAAAAATGAA
** *
77205490 TT-CTAAAAAAACCAAAATTAAATTATATATTAACAAATAAAACAAATGAAA
1 TTCCT-AAAAAATTAAAATTAAATTATATATAAACAAATAAAA-AAATG-AA
*
77205541 TTCCT-AAAAATTGAAATCTAAAT
1 TTCCTAAAAAATTAAAAT-TAAAT
77205564 AAATACTAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
49 31 0.51
50 20 0.33
51 8 0.13
52 2 0.03
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.28
Consensus pattern (49 bp):
TTCCTAAAAAATTAAAATTAAATTATATATAAACAAATAAAAAAATGAA
Found at i:77205924 original size:2 final size:2
Alignment explanation
Indices: 77205917--77205946 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77205907 ACTATTTGGC
77205917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77205947 GTAGTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77206349 original size:30 final size:30
Alignment explanation
Indices: 77206313--77206370 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
77206303 TAAATTAATG
*
77206313 ATCACATTTAATAATAACGATTAAAAAAAT
1 ATCACATTTAATAATAACGACTAAAAAAAT
*
77206343 ATCACATTTAATAATAATGACTAAAAAA
1 ATCACATTTAATAATAACGACTAAAAAA
77206371 TAATGGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
ATCACATTTAATAATAACGACTAAAAAAAT
Found at i:77206896 original size:35 final size:34
Alignment explanation
Indices: 77206838--77206905 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 34
77206828 ATAATGTTAT
* **
77206838 AATTAAATTATATTTATTTTTAACTAAAAGTTTTA
1 AATTAAATTATAATTATAATTAAC-AAAAGTTTTA
* *
77206873 AATTTAATTATAATTATAATTAACACAAGTTTT
1 AATTAAATTATAATTATAATTAACAAAAGTTTT
77206906 TTCTTATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 8 0.29
35 20 0.71
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (34 bp):
AATTAAATTATAATTATAATTAACAAAAGTTTTA
Found at i:77213284 original size:78 final size:79
Alignment explanation
Indices: 77213153--77213309 Score: 271
Period size: 78 Copynumber: 2.0 Consensus size: 79
77213143 AAAAGAAAGA
* *
77213153 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTGTGGTAGGTATTATCATGCGATAGG
1 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
77213218 TCAAG-AATTCTAT
66 TCAAGAAATTCTAT
*
77213231 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGTGATAGG
1 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
*
77213296 TTAAGAAATTCTAT
66 TCAAGAAATTCTAT
77213310 CTTCAAAAGA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
78 66 0.89
79 8 0.11
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (79 bp):
AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
TCAAGAAATTCTAT
Found at i:77216660 original size:73 final size:73
Alignment explanation
Indices: 77216541--77216687 Score: 233
Period size: 73 Copynumber: 2.0 Consensus size: 73
77216531 TAAAATGTAG
* *
77216541 ATGAACCTTGTGGTTATAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCGAT
1 ATGAACCTTGTGGTTACAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAAT
77216606 GACATTCT
66 GACATTCT
* * *
77216614 ATGAACCTTGTGGTTACAAACACTT-AGGGGATGGAAAGGTGGTCTTTTTCGTTCTATCTGTCAA
1 ATGAACCTTGTGGTTACAAACACTTGA-AGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAA
77216678 TGACATTCT
65 TGACATTCT
77216687 A
1 A
77216688 CTTATTGGAA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
72 1 0.01
73 67 0.99
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (73 bp):
ATGAACCTTGTGGTTACAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAAT
GACATTCT
Found at i:77233968 original size:40 final size:40
Alignment explanation
Indices: 77233898--77234115 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
77233888 AAACCAAGTA
* *
77233898 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
77233937 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77233977 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77234017 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77234057 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77234097 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77234116 TTACCATCCG
Statistics
Matches: 171, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 15 0.09
40 156 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77241361 original size:40 final size:40
Alignment explanation
Indices: 77241291--77241508 Score: 361
Period size: 40 Copynumber: 5.5 Consensus size: 40
77241281 AAACCAAGTA
* *
77241291 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
77241330 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77241370 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77241410 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77241450 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77241490 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77241509 TTACCATCCG
Statistics
Matches: 172, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
39 15 0.09
40 157 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77244682 original size:18 final size:18
Alignment explanation
Indices: 77244659--77244694 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
77244649 AAGTTAGTAG
77244659 ATATTCTTGATGATTCAT
1 ATATTCTTGATGATTCAT
77244677 ATATTCTTGATGATTCAT
1 ATATTCTTGATGATTCAT
77244695 CTATGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
ATATTCTTGATGATTCAT
Found at i:77249063 original size:39 final size:39
Alignment explanation
Indices: 77249042--77249160 Score: 166
Period size: 39 Copynumber: 3.1 Consensus size: 39
77249032 TCGTATTACA
* *
77249042 CATATAATCACATAACATTTAAGCATATATCACAATATT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
* *
77249081 GATATAATCACATAACATTCGAGCATATATCACAATACT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
** **
77249120 TGTATAATCACATAACATTCAAGCATACCTCACAATACT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
77249159 CA
1 CA
77249161 AAAACATGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (39 bp):
CATATAATCACATAACATTCAAGCATATATCACAATACT
Found at i:77249075 original size:22 final size:22
Alignment explanation
Indices: 77249042--77249114 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
77249032 TCGTATTACA
77249042 CATATAATCACATAACATTTAAG
1 CATATAATCACATAACATTT-AG
*
77249065 CATAT-ATCAC--AATA-TT-G
1 CATATAATCACATAACATTTAG
*
77249082 -ATATAATCACATAACATTCGAG
1 CATATAATCACATAACATT-TAG
77249104 CATAT-ATCACA
1 CATATAATCACA
77249115 ATACTTGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 15
0.69 0.05 0.26
Matches are distributed among these distances:
16 4 0.10
17 6 0.15
19 5 0.12
20 4 0.10
22 12 0.30
23 9 0.22
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.30
Consensus pattern (22 bp):
CATATAATCACATAACATTTAG
Found at i:77251503 original size:17 final size:17
Alignment explanation
Indices: 77251481--77251515 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
77251471 ATTATAAAAT
*
77251481 CAAATCTTATCAGATTA
1 CAAATCTTATAAGATTA
*
77251498 CAAATCTTTTAAGATTA
1 CAAATCTTATAAGATTA
77251515 C
1 C
77251516 TTTCCCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (17 bp):
CAAATCTTATAAGATTA
Found at i:77252517 original size:3 final size:3
Alignment explanation
Indices: 77252509--77252543 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
77252499 AGAAGATGAC
77252509 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
77252544 TGACGATGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:77254538 original size:13 final size:13
Alignment explanation
Indices: 77254522--77254569 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
77254512 ATCAAATTTT
*
77254522 TCAAAAACACTTC
1 TCAAAAGCACTTC
*
77254535 TCAAAAGCACTTT
1 TCAAAAGCACTTC
*
77254548 TCAACAGCACTTC
1 TCAAAAGCACTTC
77254561 TCAAAAGCA
1 TCAAAAGCA
77254570 TTGCCAAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.42, C:0.29, G:0.06, T:0.23
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:77254558 original size:26 final size:26
Alignment explanation
Indices: 77254519--77254569 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
77254509 TAAATCAAAT
77254519 TTTTCAAAAACACTTCTCAAAAGCAC
1 TTTTCAAAAACACTTCTCAAAAGCAC
* *
77254545 TTTTCAACAGCACTTCTCAAAAGCA
1 TTTTCAAAAACACTTCTCAAAAGCA
77254570 TTGCCAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (26 bp):
TTTTCAAAAACACTTCTCAAAAGCAC
Found at i:77263569 original size:2 final size:2
Alignment explanation
Indices: 77263562--77263593 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
77263552 TGAAAGTTGA
77263562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77263594 TTTGAAAGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77264613 original size:38 final size:38
Alignment explanation
Indices: 77264552--77264663 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
77264542 ATTTGATGTG
*
77264552 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
77264592 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
77264630 TATCAGGGATAAAT-CCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
77264664 TTATATTCGG
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
37 18 0.28
38 34 0.52
39 5 0.08
40 8 0.12
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:77264659 original size:37 final size:38
Alignment explanation
Indices: 77264568--77264669 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
77264558 GGCTTAAAGA
** * *
77264568 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
77264606 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
* *
77264644 -CCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
77264670 TCGGGCCTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 24 0.41
38 34 0.59
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
Found at i:77264920 original size:43 final size:43
Alignment explanation
Indices: 77264667--77264907 Score: 455
Period size: 43 Copynumber: 5.6 Consensus size: 43
77264657 GCTGGTATTA
77264667 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
77264710 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
77264753 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
77264796 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
77264839 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
77264882 TATTCGGGCCTTCGTGCCTACCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
77264908 GTAATGCCGG
Statistics
Matches: 193, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 193 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:77275131 original size:40 final size:40
Alignment explanation
Indices: 77275082--77275289 Score: 206
Period size: 40 Copynumber: 5.2 Consensus size: 40
77275072 TCTTCGGAAT
* *
77275082 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
77275121 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
77275161 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
77275201 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
77275241 TTAGCCCGGA-ATATTTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATA-ACCACTAGCACAAATGCCTTCGGGTC
77275281 TTAGCCCGG
1 TTAGCCCGG
77275290 GTATCATTCA
Statistics
Matches: 142, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 8 0.06
40 132 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:77283218 original size:40 final size:40
Alignment explanation
Indices: 77283169--77283376 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
77283159 TCTTCGGAAT
* *
77283169 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
77283208 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
77283248 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
77283288 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
77283328 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
77283368 TTAGCCCGG
1 TTAGCCCGG
77283377 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:77289195 original size:48 final size:48
Alignment explanation
Indices: 77289124--77289447 Score: 379
Period size: 48 Copynumber: 6.8 Consensus size: 48
77289114 ACTGTACTAA
77289124 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
77289172 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGT-GATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATAT
* * * *
77289220 ATGTGCCTATATAAGACCATGTCTAGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
* * * *
77289268 ATGTACCTATGTAAGAACATGTCTAGGG-CATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCT-GGGACATGGCATCGTCGATGATAT
* * *
77289316 GTGTG-CTAGTGTAAAACCATGTCTGGGACATGGCATCAGT-GGTGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATAT
* * * *
77289364 GTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
* ** * * *
77289412 GTG-GATTCATGTACGACCATGTCAGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
77289448 TGGTACTTTA
Statistics
Matches: 241, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
47 8 0.03
48 227 0.94
49 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
Found at i:77294526 original size:13 final size:13
Alignment explanation
Indices: 77294510--77294535 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77294500 AGAATTATTT
77294510 TTTGAAAATTTTG
1 TTTGAAAATTTTG
77294523 TTTGAAAATTTTG
1 TTTGAAAATTTTG
77294536 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:77299713 original size:40 final size:40
Alignment explanation
Indices: 77299667--77299829 Score: 220
Period size: 40 Copynumber: 4.1 Consensus size: 40
77299657 GGGATTTAGT
77299667 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
77299707 CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
77299747 CGGATATAATC-ACTAGCATAAATGCTTTCGGGACATAGCC
1 CGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * *
77299787 CGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
77299827 CGG
1 CGG
77299830 TTATCATCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:77307671 original size:40 final size:40
Alignment explanation
Indices: 77307613--77307780 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
77307603 TATCTTGGAT
*
77307613 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
77307652 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
77307692 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
77307732 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
77307772 TTAGTCCGG
1 TTAGCCCGG
77307781 TTATCATCCG
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.05
40 104 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:77316512 original size:46 final size:46
Alignment explanation
Indices: 77316445--77316537 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 46
77316435 ATTTCACGAA
* *
77316445 TGACTACCTTTTCGATTCATTTCGACGACTAA-CACATTTTTGTCGC
1 TGACTACCTCTTCGATTCATTTCGACGAC-AAGCACATTTCTGTCGC
* *
77316491 TGACTATCTCTTCGATTCATTTCGACGACAAGTACATTTCTGTCGC
1 TGACTACCTCTTCGATTCATTTCGACGACAAGCACATTTCTGTCGC
77316537 T
1 T
77316538 CAAGCGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 2 0.05
46 40 0.95
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.39
Consensus pattern (46 bp):
TGACTACCTCTTCGATTCATTTCGACGACAAGCACATTTCTGTCGC
Found at i:77318472 original size:40 final size:40
Alignment explanation
Indices: 77318427--77318594 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
77318417 CGGAATATAA
77318427 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77318467 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77318507 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77318547 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
77318587 CCGGATAT
1 CCGGATAT
77318595 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77318577 original size:80 final size:80
Alignment explanation
Indices: 77318443--77318592 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
77318433 ATAATCACGT
*
77318443 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
77318507 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
77318523 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
77318586 CCCGGAT
64 CCCGGAT
77318593 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:77321777 original size:43 final size:43
Alignment explanation
Indices: 77321726--77321811 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
77321716 GAGATATGTG
* *
77321726 GCATCCGAGCTCGTTAAGAGGTTCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATAATGGATGCGA
* * *
77321769 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATAATGGATGCGA
77321812 TTCATGCTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:77327661 original size:16 final size:17
Alignment explanation
Indices: 77327632--77327664 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
77327622 TATTGAATAA
*
77327632 GTGTAAATTTTGTGTAT
1 GTGTAAATTATGTGTAT
77327649 GTGT-AATTATGTGTAT
1 GTGTAAATTATGTGTAT
77327665 TCGGTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (17 bp):
GTGTAAATTATGTGTAT
Found at i:77337133 original size:49 final size:49
Alignment explanation
Indices: 77337051--77337176 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 49
77337041 TAAGATGCCG
* **
77337051 ACGCCATGTCCTAGACATGGTCTTACACTGGCTT-TCATATGGCGAGGCCA
1 ACGCCATGTCCCAGACA-GGTCTTACACTGGCTTGT-ATATCACGAGGCCA
*
77337101 ACGCCATGTCCCAGACAGGTCTTACACTGGCTTGTATATCATGAGGCCA
1 ACGCCATGTCCCAGACAGGTCTTACACTGGCTTGTATATCACGAGGCCA
* *
77337150 ATG-CATGTCCCAGACATGTCTTACACT
1 ACGCCATGTCCCAGACAGGTCTTACACT
77337177 AGCTCTCGTC
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
48 23 0.33
49 29 0.42
50 17 0.25
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
ACGCCATGTCCCAGACAGGTCTTACACTGGCTTGTATATCACGAGGCCA
Found at i:77344532 original size:79 final size:81
Alignment explanation
Indices: 77344421--77344604 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
77344411 GCTACTCGTT
* * *
77344421 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77344484 GGATTTAGTAAC-TCGCA
65 -GATATAGTAACTTAGCA
**
77344501 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
77344564 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
77344580 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77344605 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 21 0.23
79 56 0.61
80 15 0.16
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
ATATAGTAACTTAGCA
Found at i:77344535 original size:39 final size:41
Alignment explanation
Indices: 77344421--77344604 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
77344411 GCTACTCGTT
* *
77344421 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
77344461 TAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
77344501 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
77344540 CAAATGCCTTC-GGATCTTAGTCC-G-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
77344580 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77344605 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
38 4 0.03
39 52 0.42
40 69 0.55
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:77355667 original size:79 final size:79
Alignment explanation
Indices: 77355528--77355681 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
77355518 TGTGAATGAA
*** *
77355528 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
77355593 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
77355606 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
77355671 TGTCCCGAAGG
65 AGTCCCGAAGG
77355682 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:77355681 original size:40 final size:39
Alignment explanation
Indices: 77355528--77355651 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
77355518 TGTGAATGAA
*
77355528 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
77355567 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
77355606 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
77355646 TGTGCG
1 TGTGCG
77355652 GGTTACCATA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 64 0.79
40 17 0.21
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77363054 original size:79 final size:79
Alignment explanation
Indices: 77362915--77363068 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
77362905 TGTGAATGAA
*** *
77362915 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
77362980 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
77362993 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
77363058 TGTCCCGAAGG
65 AGTCCCGAAGG
77363069 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:77363068 original size:40 final size:39
Alignment explanation
Indices: 77362915--77363038 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
77362905 TGTGAATGAA
*
77362915 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
77362954 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
77362993 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
77363033 TGTGCG
1 TGTGCG
77363039 GGTTACCATA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 64 0.79
40 17 0.21
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77365871 original size:33 final size:33
Alignment explanation
Indices: 77365814--77365877 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
77365804 GGCCGCCATA
*
77365814 ATAGCCTCAATGGCATCAGTCCTACCAGTCATC
1 ATAGCCTCAATGGAATCAGTCCTACCAGTCATC
* *
77365847 ATAGCCTCGATGGAATCA-TCCCTACTAGTCA
1 ATAGCCTCAATGGAATCAGT-CCTACCAGTCA
77365878 GCTTTTCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (33 bp):
ATAGCCTCAATGGAATCAGTCCTACCAGTCATC
Found at i:77367382 original size:20 final size:20
Alignment explanation
Indices: 77367359--77367396 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77367349 CTTGCAACTC
77367359 ACCATAATCTTTCACAACAT
1 ACCATAATCTTTCACAACAT
* *
77367379 ACCATAGTCTTTCCCAAC
1 ACCATAATCTTTCACAAC
77367397 TTTAACATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.29
Consensus pattern (20 bp):
ACCATAATCTTTCACAACAT
Found at i:77367529 original size:42 final size:42
Alignment explanation
Indices: 77367475--77367589 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 42
77367465 CACATAGTAC
* **
77367475 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
* *
77367517 CATATCGATGCCAATAGCCC----ATGGTCTTACATGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACATGAAATCT
*
77367556 CATATCAATGCTATATCCCAGATATGGTCTTACA
1 CATATCAATGCCATATCCCAGATATGGTCTTACA
77367590 CATAACCTCA
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
38 6 0.10
39 27 0.45
42 21 0.35
43 6 0.10
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
Found at i:77369715 original size:93 final size:94
Alignment explanation
Indices: 77369554--77369728 Score: 271
Period size: 93 Copynumber: 1.9 Consensus size: 94
77369544 CGCCCATAAG
* * *
77369554 CGAACTTGGACTCAACTCAACGAACTCGGGCGTTTTTGCATCCATAAGTGAACTCGGACTCAACT
1 CGAACTCGGACTCAACTCAACGAACTCGGACG-TTTCGCATCCATAAGTGAACTCGGACTCAACT
* *
77369619 CAACGAGTTTGGATGCCTAGTTACATTTCA
65 CAACGAGCTCGGATGCCTAGTTACATTTCA
**
77369649 CGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAACTCGGACGTTTCGCATCCATAAGTGAACTCGGACTCAACTC
77369713 AACGAGCTCGGATGCC
66 AACGAGCTCGGATGCC
77369729 CAAATATTTG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 45 0.62
95 28 0.38
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (94 bp):
CGAACTCGGACTCAACTCAACGAACTCGGACGTTTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:77374793 original size:40 final size:40
Alignment explanation
Indices: 77374700--77374917 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
77374690 AAGCCAAGTA
* * *
77374700 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
77374738 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77374778 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77374818 CCTTCGGGACTTAGCCCGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77374858 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77374899 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77374918 TTATCATCCA
Statistics
Matches: 159, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 103 0.65
41 24 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77383392 original size:31 final size:31
Alignment explanation
Indices: 77383354--77383417 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
77383344 CCTTTTCATA
77383354 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
77383385 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
77383416 TT
1 TT
77383418 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:77383664 original size:24 final size:24
Alignment explanation
Indices: 77383611--77383706 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
77383601 GCTTTATCAT
*
77383611 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
77383636 CTAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77383660 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77383683 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77383707 CACTTCCTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77383686 original size:23 final size:23
Alignment explanation
Indices: 77383632--77383704 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
77383622 CCTAGCCTCT
* *
77383632 TTTACTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77383655 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
77383679 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77383702 TTT
1 TTT
77383705 TACACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:77383779 original size:20 final size:20
Alignment explanation
Indices: 77383754--77383820 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77383744 TTATGATTAC
77383754 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77383774 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77383794 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77383814 ACCATGT
1 ATCATGT
77383821 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77383785 original size:11 final size:11
Alignment explanation
Indices: 77383754--77383809 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77383744 TTATGATTAC
77383754 ATCATGTGCAT
1 ATCATGTGCAT
*
77383765 ATCA--TACAT
1 ATCATGTGCAT
77383774 ATCATGTGCAT
1 ATCATGTGCAT
*
77383785 ATCA--TACAT
1 ATCATGTGCAT
*
77383794 GTCATGTGCAT
1 ATCATGTGCAT
77383805 ATCAT
1 ATCAT
77383810 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77383889 original size:25 final size:25
Alignment explanation
Indices: 77383857--77383904 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77383847 ATACGTAAAC
* * *
77383857 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77383882 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77383905 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77391446 original size:31 final size:31
Alignment explanation
Indices: 77391395--77391474 Score: 117
Period size: 31 Copynumber: 2.5 Consensus size: 31
77391385 CTCAACATGT
77391395 ACTGGGCC-ATAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCATATTTCATAAC
**
77391427 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
77391458 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
77391475 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 34 0.76
32 10 0.22
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:77391732 original size:23 final size:24
Alignment explanation
Indices: 77391668--77391784 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
77391658 GCTTTATCAT
*
77391668 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
77391693 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77391717 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77391739 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77391762 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77391785 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
22 22 0.26
23 37 0.43
24 15 0.17
25 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77391777 original size:45 final size:46
Alignment explanation
Indices: 77391689--77391782 Score: 172
Period size: 45 Copynumber: 2.1 Consensus size: 46
77391679 CCTAGCCTCT
77391689 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCC
*
77391735 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCC
77391780 TTT
1 TTT
77391783 TACACTTCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 25 0.53
46 22 0.47
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCC
Found at i:77391857 original size:20 final size:20
Alignment explanation
Indices: 77391832--77391898 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77391822 TTATGATTAC
77391832 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77391852 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77391872 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77391892 ACCATGT
1 ATCATGT
77391899 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77391863 original size:11 final size:11
Alignment explanation
Indices: 77391832--77391887 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77391822 TTATGATTAC
77391832 ATCATGTGCAT
1 ATCATGTGCAT
*
77391843 ATCA--TACAT
1 ATCATGTGCAT
77391852 ATCATGTGCAT
1 ATCATGTGCAT
*
77391863 ATCA--TACAT
1 ATCATGTGCAT
*
77391872 GTCATGTGCAT
1 ATCATGTGCAT
77391883 ATCAT
1 ATCAT
77391888 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77391967 original size:25 final size:25
Alignment explanation
Indices: 77391935--77391982 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77391925 ATACGTAAAC
* * *
77391935 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77391960 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77391983 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77393891 original size:43 final size:43
Alignment explanation
Indices: 77393792--77393947 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 43
77393782 CAATGTCATA
* * *
77393792 TCCCAGATATGGTCTTACATGTTATCTCATATCGATGCCAATAG
1 TCCCAGATATGGTCTTACATGTAATCACATAACGATGCCAAT-G
***
77393836 -CCCA-ACTATGGTCTTACACAAAATCACATAACGATGCCAATG
1 TCCCAGA-TATGGTCTTACATGTAATCACATAACGATGCCAATG
* * * *
77393878 TCCCAGATCTGGTCTTACATGTAATAACA-ATACAATGGCAATG
1 TCCCAGATATGGTCTTACATGTAATCACATA-ACGATGCCAATG
*
77393921 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGATATGGTCTTACATGTAATCA
77393948 TATCTCGGCA
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
42 3 0.03
43 88 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGTAATCACATAACGATGCCAATG
Found at i:77399206 original size:21 final size:20
Alignment explanation
Indices: 77399176--77399220 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
77399166 TAAATATTAA
*
77399176 AATA-TTAAAATATAAATAT
1 AATATTTAAAATATAAAAAT
*
77399195 ATATATTTAAAATTTAAAAAT
1 A-ATATTTAAAATATAAAAAT
77399216 AATAT
1 AATAT
77399221 GGGCGGACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 7 0.32
21 14 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATATTTAAAATATAAAAAT
Found at i:77399476 original size:2 final size:2
Alignment explanation
Indices: 77399469--77399507 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
77399459 TTGCAAGCAT
77399469 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77399508 TTAAAGAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77402391 original size:48 final size:48
Alignment explanation
Indices: 77402328--77402504 Score: 257
Period size: 48 Copynumber: 3.7 Consensus size: 48
77402318 CACACCCTAG
77402328 GTGCCAATATCATGGCCCGAAGCCAAATCAATG-AAGCTCGCACCCGAA
1 GTGCCAATATCATGGCCCGAAGCCAAATCAATGCAA-CTCGCACCCGAA
** *
77402376 GTGCCAATATCATGGCTTGAAGCCAAATCAATGCAACTCGCACCCAAA
1 GTGCCAATATCATGGCCCGAAGCCAAATCAATGCAACTCGCACCCGAA
* * * *
77402424 GTGCCAATATCATGGCCTGAAGCCAAATCAAAGTAACTCGCACCTGAA
1 GTGCCAATATCATGGCCCGAAGCCAAATCAATGCAACTCGCACCCGAA
* *
77402472 GTGCTAATATCATGGCTCGAAGCCAAATCAATG
1 GTGCCAATATCATGGCCCGAAGCCAAATCAATG
77402505 AAGCTCCTAA
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 114 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (48 bp):
GTGCCAATATCATGGCCCGAAGCCAAATCAATGCAACTCGCACCCGAA
Found at i:77402484 original size:96 final size:96
Alignment explanation
Indices: 77402328--77402504 Score: 293
Period size: 96 Copynumber: 1.8 Consensus size: 96
77402318 CACACCCTAG
*
77402328 GTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCGAAGTGCCAATATCATGGCT
1 GTGCCAATATCATGGCCCGAAGCCAAATCAAAGAAGCTCGCACCCGAAGTGCCAATATCATGGCT
*
77402393 TGAAGCCAAATCAATGCAACTCGCACCCAAA
66 CGAAGCCAAATCAATGCAACTCGCACCCAAA
* * *
77402424 GTGCCAATATCATGGCCTGAAGCCAAATCAAAGTAA-CTCGCACCTGAAGTGCTAATATCATGGC
1 GTGCCAATATCATGGCCCGAAGCCAAATCAAAG-AAGCTCGCACCCGAAGTGCCAATATCATGGC
77402488 TCGAAGCCAAATCAATG
65 TCGAAGCCAAATCAATG
77402505 AAGCTCCTAA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
96 73 0.97
97 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (96 bp):
GTGCCAATATCATGGCCCGAAGCCAAATCAAAGAAGCTCGCACCCGAAGTGCCAATATCATGGCT
CGAAGCCAAATCAATGCAACTCGCACCCAAA
Found at i:77404282 original size:16 final size:17
Alignment explanation
Indices: 77404261--77404296 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
77404251 ATAACGCCCT
*
77404261 AAAAATCTTGAAA-CCC
1 AAAAATCTCGAAATCCC
77404277 AAAAATCTCGAAATCCC
1 AAAAATCTCGAAATCCC
77404294 AAA
1 AAA
77404297 CTTTATTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.25, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAATCTCGAAATCCC
Found at i:77405659 original size:29 final size:29
Alignment explanation
Indices: 77405618--77405726 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
77405608 AATGTGACTA
*
77405618 GGCCTAACGGGCCATATAAATGTTATTTG
1 GGCCTAATGGGCCATATAAATGTTATTTG
* * *
77405647 GGCGTAATGGGCCATATACAGGTTATTTG
1 GGCCTAATGGGCCATATAAATGTTATTTG
* * *
77405676 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTTATTTG
* * *
77405704 GGCTTAATGGGCCAGATACATGT
1 GGCCTAATGGGCCATATAAATGT
77405727 ATGTGAAATT
Statistics
Matches: 65, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 21 0.32
29 44 0.68
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTTATTTG
Found at i:77406456 original size:19 final size:19
Alignment explanation
Indices: 77406432--77406471 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77406422 CCCCTCTTTT
*
77406432 ATTTTATTTTTAGATTGTA
1 ATTTTATTTTCAGATTGTA
77406451 ATTTTATTTTCAGATTGTA
1 ATTTTATTTTCAGATTGTA
77406470 AT
1 AT
77406472 AAGGTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.60
Consensus pattern (19 bp):
ATTTTATTTTCAGATTGTA
Found at i:77409789 original size:76 final size:77
Alignment explanation
Indices: 77409585--77409801 Score: 242
Period size: 76 Copynumber: 2.8 Consensus size: 77
77409575 GCTACTTGTT
* * * * *
77409585 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTT-AGCCGG
*
77409650 ATTTAGTGACTCGCA
63 ATTTAGTAACTCGCA
* * * *
77409665 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCATGCCTTCGGG-CTTAGCCGGA-
1 CAAATGCCTTC-GGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCGGAT
77409728 TTAGTAACTCGCA
65 TTAGTAACTCGCA
** *
77409741 CAAATGCCTTC-GATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCC
77409802 CGGACATCAT
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
74 2 0.02
75 16 0.13
76 38 0.32
77 13 0.11
78 3 0.03
79 9 0.08
80 38 0.32
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCGGATT
TAGTAACTCGCA
Found at i:77409805 original size:40 final size:40
Alignment explanation
Indices: 77409585--77409805 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
77409575 GCTACTTGTT
* *
77409585 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
77409625 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
77409665 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
77409705 C-CATGCCTTCGGG-CTTAG-CCGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
77409741 CAAATGCCTTC--GATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
77409781 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77409806 CATCATTCGA
Statistics
Matches: 161, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
35 1 0.01
36 13 0.08
37 19 0.12
38 10 0.06
39 23 0.14
40 93 0.58
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:77409825 original size:115 final size:117
Alignment explanation
Indices: 77409588--77409805 Score: 284
Period size: 115 Copynumber: 1.9 Consensus size: 117
77409578 ACTTGTTCAA
* *
77409588 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 ATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGATA
* * *
77409653 TAGTGACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
65 TAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTC-AACC
* **
77409707 ATGCCTTCGGG-CTTAG-CCGGAT-TAGTAACTCGCACAAATGCCTTC-GATCTTAGTCCGGATA
1 ATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGATA
*
77409768 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
65 TAGTCAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
77409806 CATCATTCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
114 2 0.02
115 36 0.40
116 31 0.35
117 5 0.06
118 4 0.04
119 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (117 bp):
ATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATAT
AGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCAACC
Found at i:77417783 original size:77 final size:78
Alignment explanation
Indices: 77417623--77417823 Score: 262
Period size: 77 Copynumber: 2.6 Consensus size: 78
77417613 GAATCACGTA
* * * ** * *
77417623 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGGACTTAACCGGATTTAG-TACTCGCACAAATGCCTTCGGGACATAACCCGATTATAGT
77417688 AACTCGCACAAATG
65 AACTCGCACAAATG
*
77417702 CCTTCGGGACTTAACCGGATTTAGTACTCGCACAAATGCCTTCGGGACTTAACCCGATT-TAGTA
1 CCTTCGGGACTTAACCGGATTTAGTACTCGCACAAATGCCTTCGGGACATAACCCGATTATAGTA
*
77417766 ACTCGCACCAATG
66 ACTCGCACAAATG
* * *
77417779 CCTTCGGG-CTTAGCCCGAATTAGTAACTCGCACAAATGCCTTCGG
1 CCTTCGGGACTTAACCGGATTTAGT-ACTCGCACAAATGCCTTCGG
77417824 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
76 13 0.12
77 45 0.41
78 30 0.28
79 21 0.19
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATTTAGTACTCGCACAAATGCCTTCGGGACATAACCCGATTATAGTA
ACTCGCACAAATG
Found at i:77417876 original size:40 final size:40
Alignment explanation
Indices: 77417637--77417876 Score: 280
Period size: 38 Copynumber: 6.1 Consensus size: 40
77417627 CGGAATTTAA
** *
77417637 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77417677 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-A
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77417716 CCGGATTTAGT-ACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77417755 CC-GATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77417793 CCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
77417832 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77417872 CCGGA
1 CCGGA
77417877 CATCATTCGA
Statistics
Matches: 174, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
37 2 0.01
38 63 0.36
39 44 0.25
40 54 0.31
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77421188 original size:153 final size:153
Alignment explanation
Indices: 77420910--77421213 Score: 527
Period size: 153 Copynumber: 2.0 Consensus size: 153
77420900 TTGGCCTAAG
*
77420910 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
1 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACATACACTACACACACATTATGTATCGGCAAA
** *
77420975 AGCTAAAATGCCAAAAGTTTGGCTACGGTAGTCTTGTGAGTGTGCGAACACTCATAAGGGGGAGA
66 AGCTAAAATGCCAAAAGTTTGGCTACGGTAGTCTTGCAAGTGTGCAAACACTCATAAGGGGGAGA
77421040 CCGATAGGTTGGCTGACGCCCGT
131 CCGATAGGTTGGCTGACGCCCGT
77421063 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACATACACTACACACACATTATGTATCGGCAAA
1 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACATACACTACACACACATTATGTATCGGCAAA
* *
77421128 AGCTAAAATGCCGAAAGTTTGGCTACGGTAGTCTTGCAAGTGTGCAAACACTCGTAAGGGGGAGA
66 AGCTAAAATGCCAAAAGTTTGGCTACGGTAGTCTTGCAAGTGTGCAAACACTCATAAGGGGGAGA
* * *
77421193 CCGGTGGGTTGGCTGAGGCCC
131 CCGATAGGTTGGCTGACGCCC
77421214 ACGGGCGATT
Statistics
Matches: 142, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 142 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (153 bp):
GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACATACACTACACACACATTATGTATCGGCAAA
AGCTAAAATGCCAAAAGTTTGGCTACGGTAGTCTTGCAAGTGTGCAAACACTCATAAGGGGGAGA
CCGATAGGTTGGCTGACGCCCGT
Found at i:77421452 original size:29 final size:28
Alignment explanation
Indices: 77421359--77421468 Score: 116
Period size: 29 Copynumber: 3.9 Consensus size: 28
77421349 CATGATTATA
* *
77421359 AATGTGA-CTGGGCCTAACGGGCCATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
*
77421386 AAATGTAATTTGGGCCTAATGGGCCATAT
1 -AATGTGATTTGGGCCTAATGGGCCATAT
* *
77421415 ACAGGTGATTTTGGCCTAATGGGCCATAT
1 A-ATGTGATTTGGGCCTAATGGGCCATAT
* *
77421444 GAATATGA-TTGGGCTTAATGGGCCA
1 -AATGTGATTTGGGCCTAATGGGCCA
77421469 GATCAGGTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 22 0.32
29 46 0.67
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
AATGTGATTTGGGCCTAATGGGCCATAT
Found at i:77434037 original size:21 final size:21
Alignment explanation
Indices: 77433998--77434037 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
77433988 TGACTGAATG
* *
77433998 ATATCTGTACTGAGCATATTA
1 ATATCTGAACTGAACATATTA
*
77434019 ATATCTGAACTGAATATAT
1 ATATCTGAACTGAACATAT
77434038 GTACTAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (21 bp):
ATATCTGAACTGAACATATTA
Found at i:77445689 original size:216 final size:217
Alignment explanation
Indices: 77445309--77445745 Score: 786
Period size: 216 Copynumber: 2.0 Consensus size: 217
77445299 GGTGAAGTAT
*
77445309 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTTAAATGATACAAC
1 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
*
77445374 AATTTGTTTAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTGAAG
66 AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTGAAG
* *
77445439 TTTTGCGACACATTTAAAATCAATGGCATTTCTGATGATGCCATTCGTCTTTAGTTATTTCCTTT
131 TTTTGCGACACATTTAAAATCAATGGCATTTCTGATGATGCCATTCGTCTTCAGTTATTTCCCTT
77445504 TTC-TAAGGAATAAGGCTAAAC
196 TTCATAAGGAATAAGGCTAAAC
*
77445525 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAGCACGATTCAAATGATACAAC
1 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
* *
77445590 AATTTGTTCAGTTTGATGGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCGGATTTTCTGAAG
66 AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTGAAG
*
77445655 TTTTGCGACACATTTAAAATCAATGGCGTTTCTGATGATGCCATTCGTCTTCAGTTATTTCCCTT
131 TTTTGCGACACATTTAAAATCAATGGCATTTCTGATGATGCCATTCGTCTTCAGTTATTTCCCTT
77445720 TTCATTAAGGAATAAGGCTAAAC
196 TTCA-TAAGGAATAAGGCTAAAC
77445743 AGT
1 AGT
77445746 GGTTGAACTC
Statistics
Matches: 211, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
216 190 0.90
218 21 0.10
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (217 bp):
AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTGAAG
TTTTGCGACACATTTAAAATCAATGGCATTTCTGATGATGCCATTCGTCTTCAGTTATTTCCCTT
TTCATAAGGAATAAGGCTAAAC
Found at i:77454288 original size:49 final size:50
Alignment explanation
Indices: 77454157--77454299 Score: 173
Period size: 49 Copynumber: 2.9 Consensus size: 50
77454147 CTATTGTGAG
* *
77454157 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
* * * * * **
77454207 GATCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTA-T-T
1 G-TCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
77454256 AGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 -GTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
77454300 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
49 38 0.49
50 3 0.04
51 37 0.47
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (50 bp):
GTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
Found at i:77456342 original size:48 final size:47
Alignment explanation
Indices: 77456283--77456394 Score: 145
Period size: 48 Copynumber: 2.3 Consensus size: 47
77456273 CGCACCCTAG
* * *
77456283 GTGCCACTATCATGGCCTAAAGCCAAATCAATG-AAGCTCACACTCGAA
1 GTGCCAATATCATGGCC-AAAGCCAAATCAATGTAA-CTCACACCCAAA
* *
77456331 GTGCCAATATCATGGGCCAAAGCCAAATTAATGTAACTCGCACCCAAA
1 GTGCCAATATCAT-GGCCAAAGCCAAATCAATGTAACTCACACCCAAA
77456379 GTGCCAATATCATGGC
1 GTGCCAATATCATGGC
77456395 ATGAATGTGA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
47 3 0.05
48 48 0.84
49 6 0.11
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.20
Consensus pattern (47 bp):
GTGCCAATATCATGGCCAAAGCCAAATCAATGTAACTCACACCCAAA
Found at i:77458197 original size:40 final size:40
Alignment explanation
Indices: 77458100--77458251 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
77458090 TCGAATGACG
* ** *
77458100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTCCCAAA
* * *
77458140 TTCGGACTAAGAT-CCGAAGGCGTTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAA
*
77458180 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAA
* *
77458220 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
77458252 CTATTATAAC
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.91
41 8 0.08
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:77458536 original size:22 final size:22
Alignment explanation
Indices: 77458511--77458557 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
77458501 GGGTTGGAAT
77458511 GTAAAATAGAAATGATTTGAAA
1 GTAAAATAGAAATGATTTGAAA
77458533 GTAAAATAGAAATGATTTGAAA
1 GTAAAATAGAAATGATTTGAAA
77458555 GTA
1 GTA
77458558 TGTATACACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (22 bp):
GTAAAATAGAAATGATTTGAAA
Found at i:77461186 original size:17 final size:16
Alignment explanation
Indices: 77461166--77461199 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
77461156 AAAAATCATA
*
77461166 AAAATTATAAAAGTTTT
1 AAAATTACAAAA-TTTT
77461183 AAAATTACAAAATTTT
1 AAAATTACAAAATTTT
77461199 A
1 A
77461200 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATTACAAAATTTT
Found at i:77463671 original size:16 final size:17
Alignment explanation
Indices: 77463650--77463683 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
77463640 CTAGTAAAAA
77463650 ATATTTTGAAG-TTATG
1 ATATTTTGAAGTTTATG
*
77463666 ATATTTTTAAGTTTATG
1 ATATTTTGAAGTTTATG
77463683 A
1 A
77463684 GGTCTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (17 bp):
ATATTTTGAAGTTTATG
Found at i:77464332 original size:18 final size:17
Alignment explanation
Indices: 77464302--77464335 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77464292 ATTCGCATAT
*
77464302 TTTTTTAGTAAAACCTC
1 TTTTTGAGTAAAACCTC
77464319 TTTTTGAGTGAAAACCT
1 TTTTTGAGT-AAAACCT
77464336 TCAATTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTTTGAGTAAAACCTC
Found at i:77473127 original size:26 final size:26
Alignment explanation
Indices: 77473098--77473205 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
77473088 TGGTACAAAT
77473098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
77473124 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77473150 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
77473176 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77473202 TGAT
1 TGAT
77473206 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:77474590 original size:13 final size:13
Alignment explanation
Indices: 77474572--77474607 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
77474562 CGGGCCCATT
*
77474572 CGGTAAGTATGCG
1 CGGTAAGTATGAG
77474585 CGGTAAGTATGAG
1 CGGTAAGTATGAG
77474598 CGGTAAGTAT
1 CGGTAAGTAT
77474608 TCTGATAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.36, T:0.25
Consensus pattern (13 bp):
CGGTAAGTATGAG
Done.