Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 252 of 425
Found at i:77474903 original size:27 final size:27
Alignment explanation
Indices: 77474837--77474976 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
77474827 AGGAAGCGTC
* *
77474837 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
77474864 C-GGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
77474890 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
77474917 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
77474944 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGT-T
77474971 CTGGTG
1 CTGGTG
77474977 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 6, Indels: 10
0.86 0.05 0.08
Matches are distributed among these distances:
26 32 0.31
27 68 0.67
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:77474945 original size:54 final size:53
Alignment explanation
Indices: 77474837--77474976 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
77474827 AGGAAGCGTC
77474837 CTGGTGGCTATGCCACAATTATCTGATC-GGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
77474890 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
77474944 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
77474977 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
53 34 0.41
54 48 0.59
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:77474987 original size:27 final size:27
Alignment explanation
Indices: 77474837--77474994 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
77474827 AGGAAGCGTC
*
77474837 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
77474864 C-GGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
77474890 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
77474917 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
77474944 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
77474971 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
77474995 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
26 32 0.28
27 82 0.71
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:77478838 original size:40 final size:40
Alignment explanation
Indices: 77478791--77478878 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
77478781 AGCGTTTTAA
*
77478791 TGAAAAACACCGCTAAAGATCTAGCATTAGC-AGCACTTTT
1 TGAAAAACACCGCTAAAGATCTAGCACTAGCGA-CACTTTT
*
77478831 TGAAAAACGCCGCTAAAGATCTAGCACTAGCGACACTTTT
1 TGAAAAACACCGCTAAAGATCTAGCACTAGCGACACTTTT
*
77478871 TAAAAAAC
1 TGAAAAAC
77478879 TCTGCTATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (40 bp):
TGAAAAACACCGCTAAAGATCTAGCACTAGCGACACTTTT
Found at i:77479455 original size:21 final size:21
Alignment explanation
Indices: 77479422--77479464 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
77479412 TATAGTTTAG
*
77479422 GGTTAACGATTTAGGGTATAT
1 GGTTAACGATTTAAGGTATAT
* * *
77479443 GGTTAAGGGTTTAAGGTTTAT
1 GGTTAACGATTTAAGGTATAT
77479464 G
1 G
77479465 AGATACTATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.40
Consensus pattern (21 bp):
GGTTAACGATTTAAGGTATAT
Found at i:77479513 original size:14 final size:14
Alignment explanation
Indices: 77479479--77479527 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
77479469 ACTATTTTAA
*
77479479 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
77479493 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
*
77479508 GGTTTAGGGTTTAT
1 GGTTTAGGGATTAT
77479522 GGTTTA
1 GGTTTA
77479528 AGGGTTGGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 19 0.59
15 13 0.41
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:77479546 original size:7 final size:7
Alignment explanation
Indices: 77479474--77479620 Score: 64
Period size: 7 Copynumber: 20.7 Consensus size: 7
77479464 GAGATACTAT
*
77479474 TTTAAGG
1 TTTAGGG
*
77479481 TTTATGG
1 TTTAGGG
*
77479488 ATTATGGG
1 TTTA-GGG
77479496 TTTAGGG
1 TTTAGGG
* *
77479503 ATTATGG
1 TTTAGGG
77479510 TTTAGGG
1 TTTAGGG
*
77479517 TTTATGG
1 TTTAGGG
77479524 TTTAAGGG
1 TTT-AGGG
*
77479532 -TTGGGG
1 TTTAGGG
*
77479538 TTTAAGG
1 TTTAGGG
77479545 TTTAGGGG
1 TTTA-GGG
***
77479553 TCGGGGG
1 TTTAGGG
* *
77479560 TTAAGAG
1 TTTAGGG
77479567 -TTAGGGG
1 TTTA-GGG
* *
77479574 TTCAAGG
1 TTTAGGG
* *
77479581 TTAATGG
1 TTTAGGG
* *
77479588 TTTATGT
1 TTTAGGG
77479595 TTTAGGG
1 TTTAGGG
77479602 TTTAGGG
1 TTTAGGG
77479609 TTTAGGG
1 TTTAGGG
*
77479616 ATTAG
1 TTTAG
77479621 ATTAATTAGT
Statistics
Matches: 102, Mismatches: 32, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
6 5 0.05
7 84 0.82
8 13 0.13
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.41
Consensus pattern (7 bp):
TTTAGGG
Found at i:77479807 original size:21 final size:21
Alignment explanation
Indices: 77479733--77479816 Score: 60
Period size: 21 Copynumber: 4.0 Consensus size: 21
77479723 AGGGTTTACA
* * * *
77479733 GTTTAGGGTATATGGTTAAGG
1 GTTTAAGGTTTATGATTTAGG
* **
77479754 GTTTAAGGTTTATGAGTTACTA
1 GTTTAAGGTTTATGATTTA-GG
* *
77479776 TTTTAAAGTTTATGATTTAGG
1 GTTTAAGGTTTATGATTTAGG
* *
77479797 GTTTAGGGTTTAGGATTTAG
1 GTTTAAGGTTTATGATTTAG
77479817 TGTGCAATTG
Statistics
Matches: 46, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
21 30 0.65
22 16 0.35
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (21 bp):
GTTTAAGGTTTATGATTTAGG
Found at i:77479945 original size:25 final size:23
Alignment explanation
Indices: 77479896--77479949 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
77479886 ACATCATTTT
*
77479896 ATATTTATATATTGCATACATAA
1 ATATTTATATATTGCATACAAAA
* *
77479919 ATATTTATATATATTCAATATAAAA
1 ATATTTATATAT-TGC-ATACAAAA
77479944 ATATTT
1 ATATTT
77479950 TGATGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.46
24 2 0.08
25 12 0.46
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (23 bp):
ATATTTATATATTGCATACAAAA
Found at i:77480299 original size:7 final size:7
Alignment explanation
Indices: 77480287--77480341 Score: 83
Period size: 7 Copynumber: 7.6 Consensus size: 7
77480277 AAATCTTCAA
77480287 AAAAATT
1 AAAAATT
77480294 AAAAATT
1 AAAAATT
77480301 AAAAATT
1 AAAAATT
77480308 AAAAATT
1 AAAAATT
77480315 AAAAATT
1 AAAAATT
*
77480322 AAAAAAT
1 AAAAATT
77480329 AAAGAACTT
1 AAA-AA-TT
77480338 AAAA
1 AAAA
77480342 TTTTAATATT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
7 37 0.84
8 3 0.07
9 4 0.09
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:77482131 original size:3 final size:3
Alignment explanation
Indices: 77482123--77482147 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
77482113 GAGAGCTTGC
77482123 TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT T
77482148 TTAAGGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TGT
Found at i:77485431 original size:26 final size:27
Alignment explanation
Indices: 77485397--77485449 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
77485387 TATTTTGATA
*
77485397 ATGAATTTTAT-TTTTTTATATTTTTC
1 ATGAATTTTATATATTTTATATTTTTC
*
77485423 ATGACTTTTATAATATTTTATATTTTT
1 ATGAATTTTAT-ATATTTTATATTTTT
77485450 TAAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 10 0.43
28 13 0.57
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (27 bp):
ATGAATTTTATATATTTTATATTTTTC
Found at i:77485468 original size:18 final size:19
Alignment explanation
Indices: 77485418--77485469 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
77485408 TTTTTTATAT
*
77485418 TTTTCATGACTTTTATAATA
1 TTTT-ATGACTTTTATAAAA
*
77485438 TTTTAT-A-TTTTTTAAAAA
1 TTTTATGACTTTTAT-AAAA
77485456 TTTTATGACTTTTA
1 TTTTATGACTTTTA
77485470 GCAGCATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 3 0.12
20 8 0.31
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTATGACTTTTATAAAA
Found at i:77485542 original size:44 final size:44
Alignment explanation
Indices: 77485493--77485609 Score: 216
Period size: 44 Copynumber: 2.7 Consensus size: 44
77485483 GAAAAGCGCC
77485493 TTAGCGGTGTCTTTTTAGAGAAACGCCGCTAAAGGTCATGACCT
1 TTAGCGGTGTCTTTTTAGAGAAACGCCGCTAAAGGTCATGACCT
77485537 TTAGCGGTGTCTTTTTAGAGAAACGCCGCTAAAGGTCATGACCT
1 TTAGCGGTGTCTTTTTAGAGAAACGCCGCTAAAGGTCATGACCT
* *
77485581 TTAGTGGTGTCTTTTTAGATAAACGCCGC
1 TTAGCGGTGTCTTTTTAGAGAAACGCCGC
77485610 AAATTTTAGC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (44 bp):
TTAGCGGTGTCTTTTTAGAGAAACGCCGCTAAAGGTCATGACCT
Found at i:77486584 original size:46 final size:46
Alignment explanation
Indices: 77486517--77486608 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
77486507 GAAAATAAGT
77486517 TTCTTTTACAATTGGTATCAAAGAGAAGACTTTAAAAGATAGTTGA
1 TTCTTTTACAATTGGTATCAAAGAGAAGACTTTAAAAGATAGTTGA
77486563 TTCTTTTACAATTGGTATCAAAGAGAAGACTTTAAAAGATAGTTGA
1 TTCTTTTACAATTGGTATCAAAGAGAAGACTTTAAAAGATAGTTGA
77486609 AGGTGACCCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (46 bp):
TTCTTTTACAATTGGTATCAAAGAGAAGACTTTAAAAGATAGTTGA
Found at i:77498832 original size:17 final size:18
Alignment explanation
Indices: 77498810--77498850 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
77498800 CTTATTAAGA
*
77498810 GAATAATCCGT-CGTACG
1 GAATAATCCGTACGTACC
77498827 GAATAATCCGTACGTACC
1 GAATAATCCGTACGTACC
77498845 GAATAA
1 GAATAA
77498851 AATGAGCCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (18 bp):
GAATAATCCGTACGTACC
Found at i:77503763 original size:47 final size:49
Alignment explanation
Indices: 77503680--77503813 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 49
77503670 TGTAACCTGC
* * *
77503680 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
77503730 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
* *
77503773 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
77503814 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
44 2 0.03
45 2 0.03
46 28 0.40
47 27 0.39
48 2 0.03
49 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:77514439 original size:56 final size:55
Alignment explanation
Indices: 77514360--77514466 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 55
77514350 GTCGCAATCG
* * *
77514360 CTACCCTCTATTTTCATTTAAGGGATTTGT-TCTTCTAAAAATGACTCTCCAATCAT
1 CTACCCCCTATTTTCATCTAAGGGATTTCTCT-TTC-AAAAATGACTCTCCAATCAT
** *
77514416 CTACCCCCTATTTTTGTCTAAGGGATTTCTCTTTCCAAAATGACTCTCCAA
1 CTACCCCCTATTTTCATCTAAGGGATTTCTCTTTCAAAAATGACTCTCCAA
77514467 CTGTATACCC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
55 15 0.34
56 28 0.64
57 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.09, T:0.39
Consensus pattern (55 bp):
CTACCCCCTATTTTCATCTAAGGGATTTCTCTTTCAAAAATGACTCTCCAATCAT
Found at i:77517873 original size:121 final size:121
Alignment explanation
Indices: 77517659--77517900 Score: 484
Period size: 121 Copynumber: 2.0 Consensus size: 121
77517649 AGGAAATAAG
77517659 ATCTGACGTGAGTGATGGGAGGCTGATAATCATGGCTTGACTTTGGTGTGATGGAAATTTGGAGG
1 ATCTGACGTGAGTGATGGGAGGCTGATAATCATGGCTTGACTTTGGTGTGATGGAAATTTGGAGG
77517724 GAAAGTGAAACGGTTACTGGCCCAAATATTTGGGAAACCAATGGGCCAACGGGTAT
66 GAAAGTGAAACGGTTACTGGCCCAAATATTTGGGAAACCAATGGGCCAACGGGTAT
77517780 ATCTGACGTGAGTGATGGGAGGCTGATAATCATGGCTTGACTTTGGTGTGATGGAAATTTGGAGG
1 ATCTGACGTGAGTGATGGGAGGCTGATAATCATGGCTTGACTTTGGTGTGATGGAAATTTGGAGG
77517845 GAAAGTGAAACGGTTACTGGCCCAAATATTTGGGAAACCAATGGGCCAACGGGTAT
66 GAAAGTGAAACGGTTACTGGCCCAAATATTTGGGAAACCAATGGGCCAACGGGTAT
77517901 CATACAGCCT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (121 bp):
ATCTGACGTGAGTGATGGGAGGCTGATAATCATGGCTTGACTTTGGTGTGATGGAAATTTGGAGG
GAAAGTGAAACGGTTACTGGCCCAAATATTTGGGAAACCAATGGGCCAACGGGTAT
Found at i:77522740 original size:39 final size:39
Alignment explanation
Indices: 77522665--77522846 Score: 312
Period size: 39 Copynumber: 4.7 Consensus size: 39
77522655 CCGCACAAAG
*
77522665 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
77522705 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
77522744 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
77522782 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
77522821 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
77522847 TCGAACATTC
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 35 0.26
39 90 0.67
40 9 0.07
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:77522786 original size:77 final size:78
Alignment explanation
Indices: 77522625--77522846 Score: 320
Period size: 77 Copynumber: 2.8 Consensus size: 78
77522615 TCGTTCAAAC
* * ** * ** *
77522625 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
77522690 ACAATTTGCACAATT
64 ACAATTTGCACAATT
77522705 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGG-TATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
77522769 AATTTGCACAATT
66 AATTTGCACAATT
* * *
77522782 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
77522847 TCGAACATTC
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
77 74 0.57
78 15 0.12
79 32 0.25
80 9 0.07
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AATTTGCACAATT
Found at i:77529768 original size:40 final size:40
Alignment explanation
Indices: 77529641--77529770 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
77529631 ATGCTGGAAA
* *
77529641 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
77529681 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
77529721 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
77529761 TTATATCCGG
1 TTATATCCGG
77529771 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:77534095 original size:39 final size:39
Alignment explanation
Indices: 77534033--77534215 Score: 303
Period size: 39 Copynumber: 4.7 Consensus size: 39
77534023 CCGCTCAAAG
*
77534033 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
77534073 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
* *
77534112 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGTACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
77534151 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
77534190 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
77534216 TCGAACATTC
Statistics
Matches: 132, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 123 0.93
40 9 0.07
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:77535881 original size:16 final size:16
Alignment explanation
Indices: 77535856--77535893 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
77535846 TCACAGAAAG
*
77535856 TAAAATTAAAATCAA-A
1 TAAAAATAAAAT-AACA
77535872 TAAAAATAAAATAACA
1 TAAAAATAAAATAACA
77535888 TAAAAA
1 TAAAAA
77535894 ACCCAAACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAAAATAAAATAACA
Found at i:77561496 original size:36 final size:36
Alignment explanation
Indices: 77561449--77561522 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
77561439 TTTAAGGACC
77561449 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
1 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
*
77561485 TTCTCTCACTCAATATTTTAAAAAATATTCAAGGTT
1 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
77561521 TT
1 TT
77561523 TTAAATCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (36 bp):
TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
Found at i:77567478 original size:41 final size:40
Alignment explanation
Indices: 77567308--77567485 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
77567298 AAGCCAAGTA
* * *
77567308 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77567346 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77567386 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77567426 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77567467 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77567486 TTATCATCCA
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
38 12 0.09
39 18 0.14
40 69 0.54
41 24 0.19
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77575565 original size:41 final size:40
Alignment explanation
Indices: 77575395--77575572 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
77575385 AAGCCAAGTA
* * *
77575395 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77575433 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77575473 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77575513 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77575554 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77575573 TTATCATCCA
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
38 12 0.09
39 18 0.14
40 69 0.54
41 24 0.19
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77579910 original size:26 final size:27
Alignment explanation
Indices: 77579872--77580048 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
77579862 TGTAGGGTAG
** *
77579872 AATTACCAAAATACCATTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
77579899 AATTA-CAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
77579925 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * *
77579952 AATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
** ***
77579979 AATTACTGAAATA-CCCTCGACCTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
** **
77580006 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
*
77580033 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
77580049 TCGATTTACA
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.20
27 101 0.78
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:77580063 original size:27 final size:27
Alignment explanation
Indices: 77580044--77580191 Score: 199
Period size: 27 Copynumber: 5.5 Consensus size: 27
77580034 ATTACCAAAG
*
77580044 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
77580071 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
77580098 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
77580125 TACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
77580152 T-CCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
77580178 TACCCTCGTTTTAC
1 TACCCTCGATTTAC
77580192 CCTCGATTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 22 0.21
27 84 0.79
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:77580075 original size:54 final size:54
Alignment explanation
Indices: 77580017--77580408 Score: 324
Period size: 54 Copynumber: 7.1 Consensus size: 54
77580007 ATTACTGAAA
** *
77580017 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
* * *
77580071 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
* * *
77580125 TACCTTCGATTTACAGAATTACC-GTTTTCCCTCGATTTACAAAATTACTATTTTACCCTCGTTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTAC--AA--A--A--TTA--C-CGTTT
** * **
77580189 TACCCTCGATTTACA-AATTACCGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
* * ** **
77580242 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
* * ** * * *
77580296 TATCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
** * ** * * *
77580350 TACGATCGATTTATAGAATTACCGTTTTACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
77580404 TACCC
1 TACCC
77580409 CTAGGGTGTT
Statistics
Matches: 288, Mismatches: 35, Indels: 30
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.01
53 36 0.12
54 196 0.68
55 2 0.01
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 3 0.01
62 2 0.01
63 7 0.02
64 33 0.11
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAATTTACCCTCGATTTACAAAATTACCGTTT
Found at i:77580091 original size:81 final size:80
Alignment explanation
Indices: 77580004--77580345 Score: 215
Period size: 81 Copynumber: 4.1 Consensus size: 80
77579994 CTCGACCTGT
**
77580004 AAAATTACTGA-AATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCG
1 AAAATTACT-ATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCG
77580068 TTTTACCCTCGATTTAC
65 TTTT-CCCTCGATTTAC
* ** * * **** *
77580085 AGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTACCGT
1 AAAATTACTATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGT
77580150 TTTCCCTCGATTTAC
66 TTTCCCTCGATTTAC
* * **** *
77580165 AAAATTACTATTTTACCCTCGTTTTACCCTCGATTTAC-AAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACTA---TA--------ATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTAC
* **
77580229 AAAATTACTATTTTACCCTCGATTTAC
55 AGAATTACCGTTTT-CCCTCGATTTAC
* * * *** * *
77580256 AAAATTATCGT-T-TTACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTATC
1 AAAATTA-C-TATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACC
*
77580319 GTTTTACCCTCGATTTAT
64 GTTTT-CCCTCGATTTAC
*
77580337 AGAATTACT
1 AAAATTACT
77580346 GTTTTACGAT
Statistics
Matches: 215, Mismatches: 30, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
79 1 0.00
80 38 0.18
81 104 0.48
83 1 0.00
89 1 0.00
90 34 0.16
91 34 0.16
92 1 0.00
93 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (80 bp):
AAAATTACTATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGT
TTTCCCTCGATTTAC
Found at i:77580188 original size:37 final size:37
Alignment explanation
Indices: 77580147--77580220 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
77580137 ACAGAATTAC
*
77580147 CGTTTT-CCCTCGATTTACAAAATTACTATTTTACCCT
1 CGTTTTACCCTCGATTTAC-AAATTACCATTTTACCCT
*
77580184 CGTTTTACCCTCGATTTACAAATTACCGTTTTACCCT
1 CGTTTTACCCTCGATTTACAAATTACCATTTTACCCT
77580221 TGATTTACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 22 0.65
38 12 0.35
ACGTcount: A:0.23, C:0.28, G:0.07, T:0.42
Consensus pattern (37 bp):
CGTTTTACCCTCGATTTACAAATTACCATTTTACCCT
Found at i:77580188 original size:64 final size:64
Alignment explanation
Indices: 77580119--77580309 Score: 242
Period size: 64 Copynumber: 3.1 Consensus size: 64
77580109 TACAAAATTA
*
77580119 TCGTTTTACCTTCGATTTACAGAATTACCGTTTT-CCCTCGATTTACAAAATTACTATTTTACCC
1 TCGTTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
*
77580183 TCGTTTTACCCTCGATTTACAAATTACCGTTTTACCCTTGATTTACAAAATTACTATTTTACCC
1 TCGTTTTACCCTCGATTTACAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
* * *
77580247 TCGATTTA----C-----A-AAATTATCGTTTTACCCTCGATTTACAAAATTACTATTTTATCC
1 TCGTTTTACCCTCGATTTACAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
*
77580301 TCGATTTAC
1 TCGTTTTAC
77580310 AGAATTATCG
Statistics
Matches: 119, Mismatches: 6, Indels: 13
0.86 0.04 0.09
Matches are distributed among these distances:
54 49 0.41
55 1 0.01
60 1 0.01
63 12 0.10
64 56 0.47
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (64 bp):
TCGTTTTACCCTCGATTTACAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCC
Found at i:77580228 original size:37 final size:38
Alignment explanation
Indices: 77580153--77580228 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
77580143 TTACCGTTTT
* *
77580153 CCCTCGATTTACAAAATTACTATTTTACCCTCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTA
* *
77580191 CCCTCGATTTAC-AAATTACCGTTTTACCCTTGATTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTA
77580228 C
1 C
77580229 AAAATTACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
37 22 0.65
38 12 0.35
ACGTcount: A:0.25, C:0.28, G:0.07, T:0.41
Consensus pattern (38 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTA
Found at i:77580242 original size:27 final size:27
Alignment explanation
Indices: 77580185--77580408 Score: 256
Period size: 27 Copynumber: 8.3 Consensus size: 27
77580175 TTTTACCCTC
*
77580185 GTTTTACCCTCGATTTAC-AAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
*
77580211 GTTTTACCCTTGATTTACAAAATTACT
1 GTTTTACCCTCGATTTACAAAATTACT
*
77580238 ATTTTACCCTCGATTTACAAAATTA-T
1 GTTTTACCCTCGATTTACAAAATTACT
77580264 CGTTTTACCCTCGATTTACAAAATTACT
1 -GTTTTACCCTCGATTTACAAAATTACT
* * *
77580292 ATTTTATCCTCGATTTACAGAATTA-T
1 GTTTTACCCTCGATTTACAAAATTACT
* *
77580318 CGTTTTACCCTCGATTTATAGAATTACT
1 -GTTTTACCCTCGATTTACAAAATTACT
** * * *
77580346 GTTTTACGATCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
* * *
77580373 GTTTTACCCTTGATTTATAAAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
*
77580400 ATTTTACCC
1 GTTTTACCC
77580409 CTAGGGTGTT
Statistics
Matches: 174, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
26 19 0.11
27 153 0.88
28 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
GTTTTACCCTCGATTTACAAAATTACT
Found at i:77580248 original size:91 final size:91
Alignment explanation
Indices: 77580095--77580282 Score: 274
Period size: 91 Copynumber: 2.1 Consensus size: 91
77580085 AGAATTACTA
* * *
77580095 TTTTACCCTCGATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTACCGTTTTCCCTCGA
1 TTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATTTACAAAATTACCATTTTCCCTCGA
77580160 TTTACAAAATTA-CTATTTTACCCTCG
66 TTTACAAAATTATC-ATTTTACCCTCG
*
77580186 TTTTACCCTCGATTTAC-AAATTACCGTTTTACCCTT-GATTTACAAAATTACTATTTTACCCTC
1 TTTTACCCTCGATTTACAAAATTACCGTTTTA-CCTTCGATTTACAAAATTACCATTTT-CCCTC
*
77580249 GATTTACAAAATTATCGTTTTACCCTCG
64 GATTTACAAAATTATCATTTTACCCTCG
*
77580277 ATTTAC
1 TTTTAC
77580283 AAAATTACTA
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
90 31 0.35
91 56 0.64
92 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (91 bp):
TTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATTTACAAAATTACCATTTTCCCTCGA
TTTACAAAATTATCATTTTACCCTCG
Found at i:77580350 original size:81 final size:80
Alignment explanation
Indices: 77580183--77580408 Score: 285
Period size: 81 Copynumber: 2.8 Consensus size: 80
77580173 TATTTTACCC
77580183 TCGTTTTACCCTCGATTTAC-AAATTACCGTTTTACCCTTGATTTACAAAATTACTATTTTACCC
1 TCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTAC-ATTTTACCC
77580247 TCGATTTACAAAATTA
65 TCGATTTACAAAATTA
** * * * *
77580263 TCGTTTTACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTATCGTTTTACCC
1 TCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTA-CATTTTACCC
* *
77580328 TCGATTTATAGAATTA
65 TCGATTTACAAAATTA
** * * *
77580344 -CTGTTTTACGATCGATTTATAGAATTACCGTTTTACCCTTGATTTATAAAATTACCATTTTACC
1 TC-GTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTA-CATTTTACC
77580408 C
64 C
77580409 CTAGGGTGTT
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 21 0.17
81 101 0.82
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (80 bp):
TCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTACATTTTACCCT
CGATTTACAAAATTA
Found at i:77580945 original size:6 final size:6
Alignment explanation
Indices: 77580914--77581007 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
77580904 TTGCATTCAC
* *
77580914 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
77580963 -TCACCTG ATTCTA ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
77581008 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77580949 original size:31 final size:31
Alignment explanation
Indices: 77580914--77580986 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
77580904 TTGCATTCAC
* * *
77580914 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
*
77580945 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
77580976 ATTCTGATTCT
1 ATTCTGATTCT
77580987 CATTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:77583415 original size:47 final size:47
Alignment explanation
Indices: 77583346--77583450 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
77583336 CCCTTCGGGA
* * * *
77583346 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGCCCATTCGGC
77583393 CTTATCACATATATACACTTTCACATCCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGCCCATTCGGC
77583440 CTTATCACATA
1 CTTATCACATA
77583451 ATTAATACTA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGCCCATTCGGC
Found at i:77587372 original size:27 final size:27
Alignment explanation
Indices: 77587309--77587379 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
77587299 AATTTCATAT
* *
77587309 CTATAGGCTAGCATTACTGAAATACCC
1 CTATAGGGTAGAATTACTGAAATACCC
* * *
77587336 TTATAAGGTAGAATTACTGAAATGCCC
1 CTATAGGGTAGAATTACTGAAATACCC
*
77587363 CTGTAGGGTAGAATTAC
1 CTATAGGGTAGAATTAC
77587380 CAAAATATCC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
CTATAGGGTAGAATTACTGAAATACCC
Found at i:77587404 original size:27 final size:27
Alignment explanation
Indices: 77587374--77587525 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
77587364 TGTAGGGTAG
* *
77587374 AATTACCAAAATATCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
77587401 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
77587428 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
77587455 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGGTTTGTAA
* * **
77587482 AATTACTAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
77587509 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
77587526 CGATTAACAG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 104 0.95
28 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:77587459 original size:81 final size:81
Alignment explanation
Indices: 77587374--77587524 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
77587364 TGTAGGGTAG
* *
77587374 AATTACCAAAATATCCT-TGGTTTATAAAATTACCAAAATACCCTTAG-TTTGTAAAATTACCAA
1 AATTACCAAAATA-CCTCTGATTTATAAAATTACCAAAATACCC-TAGACTTGTAAAATTACCAA
77587437 AATACCCCTAGTTTGTAA
64 AATACCCCTAGTTTGTAA
* * * * *
77587455 AATTACCAAAATACCTCTGATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAG
1 AATTACCAAAATACCTCTGATTTATAAAATTACCAAAATACCCTAGACTTGTAAAATTACCAAAA
77587520 TACCC
66 TACCC
77587525 TCGATTAACA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 5 0.08
81 56 0.92
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCTCTGATTTATAAAATTACCAAAATACCCTAGACTTGTAAAATTACCAAAA
TACCCCTAGTTTGTAA
Found at i:77587550 original size:27 final size:27
Alignment explanation
Indices: 77587520--77587940 Score: 275
Period size: 27 Copynumber: 15.2 Consensus size: 27
77587510 ATTACCAAAG
*
77587520 TACCCTCGATTAACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
77587547 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77587574 TGCCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** **
77587601 TACCCTTAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77587628 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
77587655 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77587682 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * * ** *
77587709 TGCCCTCGTTTTACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTA--C-AGAATTAC--CGTT-T
*** ** * * * **
77587742 TATTTTACCCTTGAGTTACAAAATTACTATTT
1 TACCCT-CGATTTA--CAG--AATTACCGTTT
* *
77587774 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
77587801 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
77587828 TATCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77587855 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**** *
77587882 TTTGATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
77587909 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
77587936 TACCC
1 TACCC
77587941 ATAGGGTGTT
Statistics
Matches: 300, Mismatches: 85, Indels: 18
0.74 0.21 0.04
Matches are distributed among these distances:
27 269 0.90
29 2 0.01
30 6 0.02
31 4 0.01
32 5 0.02
33 5 0.02
34 4 0.01
35 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:77587551 original size:54 final size:55
Alignment explanation
Indices: 77587520--77587940 Score: 377
Period size: 54 Copynumber: 7.6 Consensus size: 55
77587510 ATTACCAAAG
* * *
77587520 TACCCTCGATTAACAGAATTACCGTTTTACCCTC-AATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
* * *
77587574 TGCCCTCGATTTACAAAATTACCGTTTTACCCT-TAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
*
77587628 TACCCTCGATTTACAAAATTATCGTTTTACCCTCG-ATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
* * * * * *
77587682 TACCTTCGATTTACAGAATTACTGTTTTGCCCTCGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCG----A------ATTTACAGAATTACCATTT
* * ** * * *
77587747 TACCCTTGAGTTACAAAATTACTATTTTACCCTCG-ATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
* ** * *
77587801 TACCCTCAATTTACAAAATTACTATTTTATCCTCG-ATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
* * * **** * *
77587855 TACCCTCGATTTATAGAATTACTGTTTTTTGATCG-ATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
* * *
77587909 TACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCGTTTTACCC
77587941 ATAGGGTGTT
Statistics
Matches: 307, Mismatches: 47, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
54 261 0.85
65 46 0.15
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (55 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGAATTTACAGAATTACCATTT
Found at i:77587580 original size:81 final size:81
Alignment explanation
Indices: 77587493--77587940 Score: 412
Period size: 81 Copynumber: 5.4 Consensus size: 81
77587483 ATTACTAAAA
* * *** *
77587493 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTAACAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
*
77587558 TACAGAATTACTATTT
66 TACAAAATTACTATTT
* * * ** ** *
77587574 TGCCCTCGATTTACAAAATTACCGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
*
77587639 TACAAAATTA-TCGTTT
66 TACAAAATTACT-ATTT
* * *
77587655 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTGCCCTCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTA----------C-CGTTT
**
77587720 TACCCTTGATTTACAAAATTACTATTT
55 TACCCTCAATTTACAAAATTACTATTT
* * * * * *
77587747 TACCCTTGAGTTACAAAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
77587812 TACAAAATTACTATTT
66 TACAAAATTACTATTT
* * * * **** *
77587828 TATCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTTTGATCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
* * **
77587893 TATAGAATTACCGTTT
66 TACAAAATTACTATTT
*
77587909 TACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCATTTTACCC
77587941 ATAGGGTGTT
Statistics
Matches: 297, Mismatches: 57, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
80 1 0.00
81 226 0.76
91 1 0.00
92 68 0.23
93 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
TACAAAATTACTATTT
Found at i:77587718 original size:65 final size:65
Alignment explanation
Indices: 77587649--77587787 Score: 190
Period size: 65 Copynumber: 2.1 Consensus size: 65
77587639 TACAAAATTA
* * * * *
77587649 TCGTTTTACCCTCGATTTACAGAATTACCATTTTA-CCTTCGATTTACAGAATTACTGTTTTGCC
1 TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTT-GAGTTACAAAATTACTATTTTACC
77587713 C
65 C
* *
77587714 TCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTTGAGTTACAAAATTACTATTTTACCC
1 TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGAGTTACAAAATTACTATTTTACCC
*
77587779 TCGATTTAC
1 TCGTTTTAC
77587788 AAAATTATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
65 61 0.94
66 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (65 bp):
TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGAGTTACAAAATTACTATTTTACCC
Found at i:77587721 original size:38 final size:38
Alignment explanation
Indices: 77587679--77587752 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
77587669 AGAATTACCA
* * *
77587679 TTTTA-CCTTCGATTTACAGAATTACTGTTTTGCCCTCG
1 TTTTACCCTT-GATTTACAAAATTACTATTTTACCCTCG
77587717 TTTTACCCTTGATTTACAAAATTACTATTTTACCCT
1 TTTTACCCTTGATTTACAAAATTACTATTTTACCCT
77587753 TGAGTTACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 28 0.88
39 4 0.12
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (38 bp):
TTTTACCCTTGATTTACAAAATTACTATTTTACCCTCG
Found at i:77587761 original size:119 final size:119
Alignment explanation
Indices: 77587596--77587828 Score: 342
Period size: 119 Copynumber: 2.0 Consensus size: 119
77587586 ACAAAATTAC
* * *
77587596 CGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-TCGTTTTACCC
1 CGTTTTACCCTTAATTTACAAAATTACTATTTTACCCTCGAGTTACAAAATTACT-ATTTTACCC
* * * * *
77587660 TCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTGCCCT
65 TCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTGCCCT
* *
77587715 CGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTTGAGTTACAAAATTACTATTTTACCCT
1 CGTTTTACCCTTAATTTACAAAATTACTATTTTACCCTCGAGTTACAAAATTACTATTTTACCCT
* *
77587780 CGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACTATTTT
66 CGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTT
77587829 ATCCTCGATT
Statistics
Matches: 101, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 100 0.99
120 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (119 bp):
CGTTTTACCCTTAATTTACAAAATTACTATTTTACCCTCGAGTTACAAAATTACTATTTTACCCT
CGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTGCCCT
Found at i:77587813 original size:146 final size:146
Alignment explanation
Indices: 77587571--77587867 Score: 443
Period size: 146 Copynumber: 2.0 Consensus size: 146
77587561 AGAATTACTA
* * * *
77587571 TTTTGCCCTCGATTTACAAAATTACCGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTTAAGTTACAAAATTACTATTTTACCCTCG
* *
77587636 ATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTA-CCTTCGATTTACAGAA
66 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCC-TCGATTTACAGAA
** *
77587700 TTACTGTTTTGCCCTCG
130 TTACCATTTTACCCTCG
* * *
77587717 TTTTACCCTTGATTTACAAAATTACTATTTTACCCTTGAGTTACAAAATTACTATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTTAAGTTACAAAATTACTATTTTACCCTCG
* *
77587782 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACTATTTTATCCTCGATTTATAGAAT
66 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCCTCGATTTACAGAAT
77587847 TACCATTTTACCCTCG
131 TACCATTTTACCCTCG
*
77587863 ATTTA
1 TTTTA
77587868 TAGAATTACT
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
146 133 0.99
147 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (146 bp):
TTTTACCCTCGATTTACAAAATTACCATTTTACCCTTAAGTTACAAAATTACTATTTTACCCTCG
ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCCTCGATTTACAGAAT
TACCATTTTACCCTCG
Found at i:77588483 original size:25 final size:25
Alignment explanation
Indices: 77588455--77588518 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
77588445 CATTCACATT
* *
77588455 CTGATTTTGATTCTGTTACCTGATG
1 CTGATTCTGATTCTGTCACCTGATG
*
77588480 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATG
77588505 CTGATTCTGATTCT
1 CTGATTCTGATTCT
77588519 CATTTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATG
Found at i:77588491 original size:6 final size:6
Alignment explanation
Indices: 77588452--77588539 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
77588442 TTGCATTCAC
* * *
77588452 ATTCTG ATTTTG ATTCTG -TTACCTG ATGCTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
77588502 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
77588540 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77598833 original size:33 final size:33
Alignment explanation
Indices: 77598791--77598860 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
77598781 GAAATGAGAG
77598791 AAAGTTTGGCACAAAGAAAAGGTAATACCATAA
1 AAAGTTTGGCACAAAGAAAAGGTAATACCATAA
*
77598824 AAAGTTTGGCACAAAGAAAAGGTAATACCTTAA
1 AAAGTTTGGCACAAAGAAAAGGTAATACCATAA
77598857 AAAG
1 AAAG
77598861 AACCAAAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (33 bp):
AAAGTTTGGCACAAAGAAAAGGTAATACCATAA
Found at i:77600491 original size:27 final size:27
Alignment explanation
Indices: 77600472--77600736 Score: 278
Period size: 27 Copynumber: 9.8 Consensus size: 27
77600462 ATTACCAAAG
*
77600472 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
77600499 TACCCCTGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
77600526 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
77600553 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
77600580 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** *
77600607 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
77600634 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
77600661 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
77600688 TACCCTTGATTTACAAAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
77600715 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
77600737 AGAAATACCC
Statistics
Matches: 208, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 208 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:77600544 original size:81 final size:81
Alignment explanation
Indices: 77600472--77600735 Score: 370
Period size: 81 Copynumber: 3.3 Consensus size: 81
77600462 ATTACCAAAG
* * * *
77600472 TACCCCCGATTTACAGAATTATCGTTTTACCC-CTGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTC-GATTTATAAAATTACCGTTTTACCCTTGAT
77600536 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
77600553 TACCCTCGATTTACAGAATTA-CTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGAT
1 TACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGAT
* *
77600617 TTACAGAATTACTGTTT
65 TTACAAAATTACCGTTT
* * * **
77600634 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
**
77600699 TACAAAATTACTATTT
66 TACAAAATTACCGTTT
*
77600715 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
77600736 CAGAAATACC
Statistics
Matches: 167, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
80 1 0.01
81 164 0.98
82 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
TACAAAATTACCGTTT
Found at i:77600745 original size:27 final size:27
Alignment explanation
Indices: 77600372--77600938 Score: 174
Period size: 27 Copynumber: 20.9 Consensus size: 27
77600362 AATACTTTAG
* * *
77600372 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACAGAAATACCC-TCGA
*
77600401 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACAGAAATACCCTCGA
** * *
77600427 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ** * *
77600454 CTTGTAAAATTACCA-AAGTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* ***
77600481 TTTACAGAATTATC-GTTTTACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* * ***
77600508 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ***
77600535 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * ***
77600562 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * *** *
77600589 TTTATAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * ***
77600616 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
*** *
77600643 TTTACAAAATTATC-GTTTTACCGTCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * *** *
77600670 TTTATAGAATTACTA-TTTTACCCTTGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
***
77600697 TTTACAAAATTACTA-TTTTACCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*
77600724 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
77600751 TTTGTAAAATTACCA-AAATACCC-CTA
1 TTTACAAAATTA-CAGAAATACCCTCGA
** *
77600777 GTTTGTAAAATTACCA-AAATACCACT-GG
1 -TTTACAAAATTA-CAGAAATACC-CTCGA
*** * *
77600805 TTTGTGAAATTACTGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
**
77600832 TTTGTAAAATTACCA-AAATACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* *
77600859 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * *
77600886 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC--AAAATTACAGAAATACCCTCGA
* *
77600915 TTTACAAAATTACTGAAAAACCCT
1 TTTACAAAATTACAGAAATACCCT
77600939 TGGTTTGTAG
Statistics
Matches: 445, Mismatches: 67, Indels: 54
0.79 0.12 0.10
Matches are distributed among these distances:
25 1 0.00
26 20 0.04
27 384 0.86
28 17 0.04
29 21 0.05
30 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTCGA
Found at i:77600762 original size:81 final size:80
Alignment explanation
Indices: 77600472--77600765 Score: 365
Period size: 81 Copynumber: 3.6 Consensus size: 80
77600462 ATTACCAAAG
* * * * * *
77600472 TACCCCCGATTTACAGAATTATCGTTTTACCC-CTGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTC-GATTTATAAAATTACCATTTTACCCTTGAT
*
77600536 TTACAAAATTACCGTTT
64 TTACAAAATTACTGTTT
* *
77600553 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
*
77600618 TACAGAATTACTGTTT
65 TACAAAATTACTGTTT
* * *
77600634 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
*
77600699 TACAAAATTACTATTT
65 TACAAAATTACTGTTT
*** * *
77600715 TACCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCA
77600766 AAATACCCCT
Statistics
Matches: 188, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
80 2 0.01
81 184 0.98
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTT
ACAAAATTACTGTTT
Found at i:77600763 original size:54 final size:54
Alignment explanation
Indices: 77600472--77600738 Score: 358
Period size: 54 Copynumber: 4.9 Consensus size: 54
77600462 ATTACCAAAG
* * * * *
77600472 TACCCCCGATTTACAGAATTATCGTTTTACCC-CTGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTC-GATTTACAGAATTACAGTTT
*
77600526 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTT
* * *
77600580 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTT
* * *
77600634 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTA-TTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC-AGTTT
* ** *
77600688 TACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACAG
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACAG
77600739 AAATACCCTC
Statistics
Matches: 190, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 188 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTT
Found at i:77600773 original size:81 final size:81
Alignment explanation
Indices: 77600526--77600871 Score: 284
Period size: 81 Copynumber: 4.3 Consensus size: 81
77600516 ATTACCGTTT
* * * *** *
77600526 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCAATT
****
77600591 TATAAAATTACCGTTT
66 TATAAAATTACCAAAA
* ** *** * *
77600607 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA-TCGTTTTACCGTCGAT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACT-GAAATACCCTCAAT
* * ***
77600671 TTATAGAATTACTATTT
65 TTATAAAATTACCAAAA
* *
77600688 TACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCAATT
*
77600753 TGTAAAATTACCAAAA
66 TATAAAATTACCAAAA
* ** *** * ***
77600769 TACCCCT-AGTTTGTAAAATTACCAAAATACCACT-GGTTTGTGAAATTACTGAAATACCCTCAA
1 TACCCTTGA-TTTACAAAATTACCATTTTACC-CTCGATTTACAAAATTACTGAAATACCCTCAA
*
77600832 TTTGTAAAATTACCAAAA
64 TTTATAAAATTACCAAAA
* *
77600850 TACCCCTGATTTACAAAGTTAC
1 TACCCTTGATTTACAAAATTAC
77600872 AGAAATACCC
Statistics
Matches: 223, Mismatches: 37, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
80 2 0.01
81 218 0.98
82 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCAATT
TATAAAATTACCAAAA
Found at i:77600941 original size:27 final size:27
Alignment explanation
Indices: 77600893--77600944 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
77600883 TGACTTTCTA
*
77600893 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAAAACCATTGGTTTAC
*
77600920 AAAATTACT-GAAAAACCCTTGGTTT
1 AAAATTA-TAGAAAAACCATTGGTTT
77600945 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAAAACCATTGGTTTAC
Found at i:77601028 original size:27 final size:27
Alignment explanation
Indices: 77600997--77601089 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
77600987 TACCCCTATT
*
77600997 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
77601024 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
77601051 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
77601078 TGGTAAAATGAC
1 AGGTAAAATGAC
77601090 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:77601812 original size:8 final size:8
Alignment explanation
Indices: 77601801--77601828 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
77601791 TAAAGCGATA
77601801 AAATGCCG
1 AAATGCCG
77601809 AAATGCCG
1 AAATGCCG
77601817 AAATGCCG
1 AAATGCCG
77601825 AAAT
1 AAAT
77601829 TCTGGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:77602283 original size:25 final size:25
Alignment explanation
Indices: 77602254--77602301 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77602244 TTATAATATG
* * *
77602254 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
77602279 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
77602302 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:77602352 original size:9 final size:9
Alignment explanation
Indices: 77602340--77602396 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
77602330 TTTGATAAAC
77602340 ATGATATGT
1 ATGATATGT
*
77602349 ATGATATGCAC
1 ATGATATG--T
*
77602360 ATGACATGT
1 ATGATATGT
*
77602369 ATGATATGCAC
1 ATGATATG--T
77602380 ATGATATGT
1 ATGATATGT
77602389 ATGATATG
1 ATGATATG
77602397 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:77602363 original size:20 final size:20
Alignment explanation
Indices: 77602338--77602400 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
77602328 ATTTTGATAA
77602338 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77602358 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
77602378 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77602398 ACA
1 ACA
77602401 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77602482 original size:24 final size:23
Alignment explanation
Indices: 77602455--77602765 Score: 455
Period size: 24 Copynumber: 13.0 Consensus size: 23
77602445 GAGGAAGTGA
77602455 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77602478 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
77602502 AAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
77602526 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
77602550 AAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
77602574 CAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
77602599 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
77602622 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77602645 GATAAAGGGCTTATGCCCCAGTTAT
1 -A-AAAGGGCTTATGCCCCAGTTAT
*
77602670 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
77602693 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
77602717 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
77602741 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77602765 A
1 A
77602766 TGATAAAGCA
Statistics
Matches: 270, Mismatches: 9, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
23 73 0.27
24 158 0.59
25 39 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:77602992 original size:31 final size:31
Alignment explanation
Indices: 77602957--77603020 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77602947 CGTTTACAGT
*
77602957 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
77602988 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
77603019 AA
1 AA
77603021 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:77609323 original size:26 final size:26
Alignment explanation
Indices: 77609293--77609343 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
77609283 ACCAGCACAC
*
77609293 TAATATCGCAGTAG-AGCTGCCAGTAA
1 TAATAACGCAG-AGTAGCTGCCAGTAA
*
77609319 TAATAACGCAGCGTAGCTGCCAGTA
1 TAATAACGCAGAGTAGCTGCCAGTA
77609344 GCAGTAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
TAATAACGCAGAGTAGCTGCCAGTAA
Found at i:77614168 original size:22 final size:21
Alignment explanation
Indices: 77614143--77614192 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
77614133 GGGCTCACAT
**
77614143 GCCCGTGTGGTCCGAGGGACAC
1 GCCCGTGTGACCCGA-GGACAC
*
77614165 GCCCGTGTGACCCTAGGACAC
1 GCCCGTGTGACCCGAGGACAC
77614186 GCCCGTG
1 GCCCGTG
77614193 CTGCAGGCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.14
Consensus pattern (21 bp):
GCCCGTGTGACCCGAGGACAC
Found at i:77616426 original size:23 final size:24
Alignment explanation
Indices: 77616367--77616494 Score: 68
Period size: 26 Copynumber: 5.3 Consensus size: 24
77616357 GAGCCATATT
**
77616367 CAGTAAGCTCCTCCTGAGCTGATGAA
1 CAGTAAGCT-CTATTGAGCTGA-GAA
77616393 CAGTAAGCTCTATTGAGCTGA-AA
1 CAGTAAGCTCTATTGAGCTGAGAA
* * *
77616416 CTGTAATCTCT-TTCGAG-T-TGAA
1 CAGTAAGCTCTATT-GAGCTGAGAA
* *
77616438 CAGTAAGCTC-ATACGAGCTGATATA
1 CAGTAAGCTCTAT-TGAGCTGAGA-A
* * *
77616463 TCAGTAAGCTCCAATGAGCTGAAAA
1 -CAGTAAGCTCTATTGAGCTGAGAA
*
77616488 TAGTAAG
1 CAGTAAG
77616495 ATCTTACGAG
Statistics
Matches: 79, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
22 17 0.22
23 15 0.19
24 7 0.09
25 12 0.15
26 27 0.34
27 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (24 bp):
CAGTAAGCTCTATTGAGCTGAGAA
Found at i:77616454 original size:22 final size:21
Alignment explanation
Indices: 77616389--77616458 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 21
77616379 CCTGAGCTGA
*
77616389 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTA-CGAGC
* * * *
77616411 TGAAACTGTAATCTCTTTCGAGT
1 TG-AACAGTAAGCTC-TACGAGC
77616434 TGAACAGTAAGCTCATACGAGC
1 TGAACAGTAAGCTC-TACGAGC
77616456 TGA
1 TGA
77616459 TATATCAGTA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
22 20 0.56
23 15 0.42
24 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (21 bp):
TGAACAGTAAGCTCTACGAGC
Found at i:77616532 original size:26 final size:26
Alignment explanation
Indices: 77616438--77616525 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 26
77616428 TCGAGTTGAA
77616438 CAGTAAGCTCATACGAGCTGATATAT
1 CAGTAAGCTCATACGAGCTGATATAT
* *
77616464 CAGTAAGCTCCA-ATGAGCTGA-AAAT
1 CAGTAAGCT-CATACGAGCTGATATAT
* *
77616489 -AGTAAGATCTTACGAGCTGATATAT
1 CAGTAAGCTCATACGAGCTGATATAT
*
77616514 CGGTAAGCTCAT
1 CAGTAAGCTCAT
77616526 GTGAGCTATG
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
23 1 0.02
24 15 0.31
25 6 0.12
26 25 0.51
27 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (26 bp):
CAGTAAGCTCATACGAGCTGATATAT
Found at i:77618359 original size:58 final size:57
Alignment explanation
Indices: 77618206--77618361 Score: 138
Period size: 58 Copynumber: 2.7 Consensus size: 57
77618196 CCACATATCG
* * * *
77618206 TATAACAGGATTACCAGTCC-AGCTAAATCCTTTATATAACGTATGCTCAAAAGAGCT
1 TATATCAGGATTACCAGTCCAAGCTAAATCCTTT-TATAATGTATACTCAAAAGAGAT
* * * * * * * *
77618263 CA-ATTAGGATTATCAGTCCAAGTTAAACCCTAATTATAATGTATACTCGAGAG-GTAT
1 TATATCAGGATTACCAGTCCAAGCTAAATCCT-TTTATAATGTATACTCAAAAGAG-AT
*
77618320 TATATCAGGATTACCTGTCCAAGCTAAATCCTTTCTATAATG
1 TATATCAGGATTACCAGTCCAAGCTAAATCCTTT-TATAATG
77618362 AGGTCAATAA
Statistics
Matches: 75, Mismatches: 19, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
56 15 0.20
57 28 0.37
58 32 0.43
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (57 bp):
TATATCAGGATTACCAGTCCAAGCTAAATCCTTTTATAATGTATACTCAAAAGAGAT
Found at i:77619282 original size:18 final size:16
Alignment explanation
Indices: 77619251--77619284 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
77619241 AATAAGATGA
77619251 AATTTTATTTTTAATT
1 AATTTTATTTTTAATT
77619267 AATTATTATCTTTTAATT
1 AATT-TTAT-TTTTAATT
77619285 TTTGTGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTAATT
Found at i:77633392 original size:40 final size:40
Alignment explanation
Indices: 77633303--77633504 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
77633293 AAATATGGAT
* * *
77633303 GGCTAAGTCCCGAAGGCATTTATGC---TGAATATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* *
77633340 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* * *
77633380 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCG
* ** *
77633420 GGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCG
* * * *
77633460 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
77633499 GGCTAA
1 GGCTAA
77633505 ATTCCGAAGA
Statistics
Matches: 139, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
37 25 0.18
39 6 0.04
40 106 0.76
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
Found at i:77641481 original size:40 final size:40
Alignment explanation
Indices: 77641387--77641593 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
77641377 TGAATGATAC
* * *
77641387 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-AATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * *
77641426 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* *
77641466 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * *
77641506 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * * * *
77641546 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
77641586 CC-GGCTAA
1 CCGGGCTAA
77641594 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
39 40 0.28
40 102 0.71
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
Found at i:77645558 original size:48 final size:48
Alignment explanation
Indices: 77645501--77645731 Score: 222
Period size: 48 Copynumber: 4.9 Consensus size: 48
77645491 CACATGGTAG
* * *
77645501 GATGCCAATGCCATATCCCGGATATGGTCTTAAATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATT
* * *** *
77645549 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATTGTAGATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATT
* *
77645597 GATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATT
* * * ** * *
77645645 GATGCCGAT---A-G-CCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTAAATGGGATCACATATT
* * *
77645688 GATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACA
77645732 CATAACCTGT
Statistics
Matches: 147, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 109 0.74
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATT
Found at i:77645706 original size:91 final size:95
Alignment explanation
Indices: 77645501--77645731 Score: 265
Period size: 91 Copynumber: 2.5 Consensus size: 95
77645491 CACATGGTAG
* * * *
77645501 GATGCCAATGCCATATCCCGGATATGGTCTTAAATGGGATCACATATTGATGCCAATGTCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATCGATGCCAA-GTCATGTC
* ** ** *
77645566 CCAGACATGGTCTTACATGGGATTGTAGATT
65 CCAGACATGGTCTTACACGAAATTACAGATC
* *
77645597 GATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGATGCCGA-T-A-G-CC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATCGATGCCAAGTCATGTCC
*
77645658 CAG-CTATGGTCTTACACGAAATTACATATC
66 CAGAC-ATGGTCTTACACGAAATTACAGATC
* * *
77645688 GATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACA
77645732 CATAACCTGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 64 0.54
92 1 0.01
93 1 0.01
94 1 0.01
96 50 0.42
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (95 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATATCGATGCCAAGTCATGTCC
CAGACATGGTCTTACACGAAATTACAGATC
Found at i:77651544 original size:29 final size:29
Alignment explanation
Indices: 77651482--77651584 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
77651472 GTGACGAGAT
* * *
77651482 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
77651511 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
77651540 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
77651569 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77651585 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:77653058 original size:41 final size:41
Alignment explanation
Indices: 77652995--77653076 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
77652985 TTAACACCTC
* * *
77652995 GTGTTCGACTCCAGCGACGGTCTCGGGTTCGGGGTGTTACA
1 GTGTTCGACTCCAGCAACGGTCTCGGGTACGGGGCGTTACA
*
77653036 GTGTTCGACTCCAGCAATGGTCTCGGGTACGGGGCGTTACA
1 GTGTTCGACTCCAGCAACGGTCTCGGGTACGGGGCGTTACA
77653077 ATTTTATTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.15, C:0.24, G:0.35, T:0.26
Consensus pattern (41 bp):
GTGTTCGACTCCAGCAACGGTCTCGGGTACGGGGCGTTACA
Found at i:77653599 original size:40 final size:40
Alignment explanation
Indices: 77653542--77653795 Score: 445
Period size: 40 Copynumber: 6.3 Consensus size: 40
77653532 GAGAGTTATT
* *
77653542 TATATCCAGGTTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
77653582 TGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
77653622 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
77653662 TATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
77653702 TGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
77653742 TATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
77653782 TATATCCGTGCTAA
1 TATATCCGGGCTAA
77653796 ACCTCAAAGG
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 203 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
Found at i:77653777 original size:23 final size:23
Alignment explanation
Indices: 77653711--77653777 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
77653701 ATGTATCCGG
77653711 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
77653734 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
77653751 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
77653774 GCTA
1 GCTA
77653778 GTGATATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 8 0.25
18 4 0.12
19 2 0.06
21 2 0.06
22 4 0.12
23 12 0.38
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (23 bp):
GCTAAGTTCCGAAGAGCATTCGT
Found at i:77653918 original size:57 final size:57
Alignment explanation
Indices: 77653823--77653954 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
77653813 GCTGGAATTA
** *
77653823 TGAGGCACTGTGTGTGTAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGT-AG
1 TGAGGCACTGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
* * * * *
77653879 TTGAGGCACTATGTGTGCGAGTTCTTCAATCGAGTACTATGTGTGCGAAATCAGTCAG
1 -TGAGGCACTGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
77653937 TG-GGCACTGTGTGTGCGA
1 TGAGGCACTGTGTGTGCGA
77653955 AATTATACAA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 15 0.23
57 48 0.74
58 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
Found at i:77669944 original size:24 final size:24
Alignment explanation
Indices: 77669900--77669947 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
77669890 TTACACTTCA
* *
77669900 AACCTAAAATCTTTTCGAATTTTG
1 AACCTAAAATATTTTCAAATTTTG
77669924 AACCTAAAAATATTTT-AAATTTTG
1 AACCT-AAAATATTTTCAAATTTTG
77669948 GGCTCATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (24 bp):
AACCTAAAATATTTTCAAATTTTG
Found at i:77670186 original size:31 final size:32
Alignment explanation
Indices: 77670137--77670199 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
77670127 TTTAAAACCT
77670137 TAATTTTCACTTTTAATAACTTTCTAAACATC
1 TAATTTTCACTTTTAATAACTTTCTAAACATC
77670169 TAATTTTCAC-TTTAATAACTTTCTAAACATC
1 TAATTTTCACTTTTAATAACTTTCTAAACATC
77670200 CCTTAAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (32 bp):
TAATTTTCACTTTTAATAACTTTCTAAACATC
Found at i:77674204 original size:46 final size:46
Alignment explanation
Indices: 77674146--77674410 Score: 168
Period size: 46 Copynumber: 5.7 Consensus size: 46
77674136 TGGGCATCCA
* *
77674146 AACTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTG
* * * * *
77674192 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--GTC-T-G
* *
77674238 AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCTG
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTG
* * * * *
77674285 AACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCTG
* * * * *
77674332 AGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGTACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTG
** * * *
77674378 AGTTCATTGAGTTGAGTTCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77674411 GCGGGCTACA
Statistics
Matches: 167, Mismatches: 34, Indels: 36
0.70 0.14 0.15
Matches are distributed among these distances:
42 6 0.04
43 7 0.04
44 2 0.01
45 6 0.04
46 77 0.46
47 49 0.29
48 6 0.04
49 2 0.01
50 7 0.04
51 5 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTG
Found at i:77674249 original size:93 final size:93
Alignment explanation
Indices: 77674138--77674403 Score: 397
Period size: 93 Copynumber: 2.9 Consensus size: 93
77674128 CAAATATTTG
* * *
77674138 GGCATCCAAACTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
77674203 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
77674231 GGCATCCAAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCTGAACTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
*
77674296 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * * ** *
77674324 GGCATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGTACGCCCGAGTTCATTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
*
77674389 TTGAGTTCGAGTTCG
66 TTGAGTCCGAGTTCG
77674404 CTTATGGGCG
Statistics
Matches: 155, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:77674254 original size:47 final size:47
Alignment explanation
Indices: 77674194--77674356 Score: 167
Period size: 47 Copynumber: 3.5 Consensus size: 47
77674184 AACGTCTGAA
77674194 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
* * * * *
77674241 CTCATTGAGTTGAGTCCGAGTTCACTTATGGAT-TCGAAC--GTC-T-GAA-
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT--AACTAGGCATCCAAG
* *
77674287 CTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
*
77674334 CTCGTTAAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
77674357 ACTTATGGAT
Statistics
Matches: 91, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 22 0.24
47 45 0.49
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
Found at i:77677123 original size:93 final size:93
Alignment explanation
Indices: 77677015--77677185 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77677005 GCCCCTAAGT
* * *
77677015 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77677080 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
77677108 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77677173 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77677186 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:77677182 original size:46 final size:46
Alignment explanation
Indices: 77677010--77677182 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
77677000 AACCCGCCCC
* * * *
77677010 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
77677056 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
77677104 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
77677149 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77677183 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:77679619 original size:15 final size:15
Alignment explanation
Indices: 77679601--77679629 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77679591 AAGATAGAGA
77679601 AATCCAGAATAAAGG
1 AATCCAGAATAAAGG
77679616 AATCCAGAATAAAG
1 AATCCAGAATAAAG
77679630 AAACCCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AATCCAGAATAAAGG
Found at i:77682710 original size:93 final size:93
Alignment explanation
Indices: 77682601--77682771 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77682591 GCCCCTAAGT
* * *
77682601 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77682666 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
77682694 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77682759 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77682772 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:77682768 original size:46 final size:46
Alignment explanation
Indices: 77682596--77682768 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
77682586 AACCCGCCCC
* * * * *
77682596 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
77682642 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
77682690 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
77682735 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77682769 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:77688107 original size:25 final size:25
Alignment explanation
Indices: 77688051--77688124 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
77688041 ACGAATTTTC
* *
77688051 TCAAAATTTTACCAAGGGTAAAATCGT
1 TCAAAATTTTA-CTAGGGTAAAAT-TT
*
77688078 T-AAAATTTTACTACGGTAAAATTT
1 TCAAAATTTTACTAGGGTAAAATTT
77688102 TCAAAATTTTACT-GGGTAAAATT
1 TCAAAATTTTACTAGGGTAAAATT
77688125 GGGGTGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 11 0.26
25 21 0.50
26 9 0.21
27 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATTT
Found at i:77692643 original size:21 final size:20
Alignment explanation
Indices: 77692604--77692648 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
77692594 TTTGCCTAAG
*
77692604 ATGTGAATTTGATGGAATTGA
1 ATGTGAATTTGATGAAATT-A
* *
77692625 ATGTGAATTTTATTAAATTA
1 ATGTGAATTTGATGAAATTA
77692645 ATGT
1 ATGT
77692649 TAAATTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (20 bp):
ATGTGAATTTGATGAAATTA
Found at i:77693294 original size:24 final size:24
Alignment explanation
Indices: 77693267--77693387 Score: 75
Period size: 24 Copynumber: 4.9 Consensus size: 24
77693257 TGGCTCTTTG
*
77693267 GAGCTACCCGTTATTGGCTCGCAT
1 GAGCTTCCCGTTATTGGCTCGCAT
**
77693291 GAGCTTCCCGATTA-TGGCTCTTAT
1 GAGCTTCCCG-TTATTGGCTCGCAT
* * * *
77693315 GAGCTTTCCGTTATATAGCCCCGGAT
1 GAGCTTCCCGTTAT-T-GGCTCGCAT
* * *
77693341 -ATGCTTCCCATTATATGGTTCACAT
1 GA-GCTTCCCGTTAT-TGGCTCGCAT
*
77693366 GAGCTTCCTGTTATATGGCTCG
1 GAGCTTCCCGTTAT-TGGCTCG
77693388 AGAGAAGCCT
Statistics
Matches: 72, Mismatches: 19, Indels: 11
0.71 0.19 0.11
Matches are distributed among these distances:
23 3 0.04
24 26 0.36
25 25 0.35
26 18 0.25
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCGCAT
Found at i:77693323 original size:25 final size:23
Alignment explanation
Indices: 77693256--77693328 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
77693246 TTCTTTTTTA
*
77693256 ATGGCTCTT-TGGAGCTACCCGTT
1 ATGGCTCTTAT-GAGCTTCCCGTT
**
77693279 ATTGGCTCGCATGAGCTTCCCGATT
1 A-TGGCTCTTATGAGCTTCCCG-TT
*
77693304 ATGGCTCTTATGAGCTTTCCGTT
1 ATGGCTCTTATGAGCTTCCCGTT
77693327 AT
1 AT
77693329 ATAGCCCCGG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
23 5 0.12
24 32 0.78
25 4 0.10
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (23 bp):
ATGGCTCTTATGAGCTTCCCGTT
Found at i:77712583 original size:41 final size:41
Alignment explanation
Indices: 77712517--77712769 Score: 224
Period size: 41 Copynumber: 6.0 Consensus size: 41
77712507 AATAATCCTG
* *
77712517 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
1 AATTGCACATACATGTCCCTGTTTGTACTTCGGTACCCCTA
* * *
77712558 AATTGCACATACATGTCCTTATTTGTACTTCGATACCCCTA
1 AATTGCACATACATGTCCCTGTTTGTACTTCGGTACCCCTA
* ** * * *
77712599 ATTTGCACATGTATG-CCATTGTTTGTACTTCGATACCCCTG
1 AATTGCACATACATGTCC-CTGTTTGTACTTCGGTACCCCTA
* ***
77712640 AATTGTACATGTGTGTCCCTGTTTG-ATCTTCGGTACCCCTA
1 AATTGCACATACATGTCCCTGTTTGTA-CTTCGGTACCCCTA
* *
77712681 AATTGCACAGACATCATGTGTGTCCCTGTTTG-ATCTTTGGTACCCCTA
1 AATTGCAC--ATA-CA----TGTCCCTGTTTGTA-CTTCGGTACCCCTA
* *
77712729 AATTGCACAGACATGCCCCTGTTTGTACTTCGGTACCCCTA
1 AATTGCACATACATGTCCCTGTTTGTACTTCGGTACCCCTA
77712770 GATGTACTTT
Statistics
Matches: 176, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
40 3 0.02
41 130 0.74
42 3 0.02
43 1 0.01
45 2 0.01
46 2 0.01
48 35 0.20
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (41 bp):
AATTGCACATACATGTCCCTGTTTGTACTTCGGTACCCCTA
Found at i:77712723 original size:48 final size:48
Alignment explanation
Indices: 77712647--77712742 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
77712637 CTGAATTGTA
77712647 CATGTGTGTCCCTGTTTGATCTTCGGTACCCCTAAATTGCACAGACAT
1 CATGTGTGTCCCTGTTTGATCTTCGGTACCCCTAAATTGCACAGACAT
*
77712695 CATGTGTGTCCCTGTTTGATCTTTGGTACCCCTAAATTGCACAGACAT
1 CATGTGTGTCCCTGTTTGATCTTCGGTACCCCTAAATTGCACAGACAT
77712743 GCCCCTGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (48 bp):
CATGTGTGTCCCTGTTTGATCTTCGGTACCCCTAAATTGCACAGACAT
Found at i:77719300 original size:19 final size:19
Alignment explanation
Indices: 77719278--77719315 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77719268 AAAGGTATGA
77719278 AAGCTTTTATATTTTGTTT
1 AAGCTTTTATATTTTGTTT
77719297 AAGCTTTTATATTTTGTTT
1 AAGCTTTTATATTTTGTTT
77719316 TTCTTTCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (19 bp):
AAGCTTTTATATTTTGTTT
Found at i:77720413 original size:17 final size:18
Alignment explanation
Indices: 77720377--77720421 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
77720367 AAAGCCCAGC
77720377 AAATGATAATGCTTCCAAT
1 AAATGATAATGC-TCCAAT
*
77720396 AAATGATATTGC-CCAAT
1 AAATGATAATGCTCCAAT
77720413 AAATGATAA
1 AAATGATAA
77720422 ATGATAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.54
19 11 0.46
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (18 bp):
AAATGATAATGCTCCAAT
Found at i:77722455 original size:15 final size:15
Alignment explanation
Indices: 77722431--77722465 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
77722421 TATGATATGG
* *
77722431 GTGTGTCACTTGGCC
1 GTGTGGCACTTGCCC
77722446 GTGTGGCACTTGCCC
1 GTGTGGCACTTGCCC
77722461 GTGTG
1 GTGTG
77722466 AGCCACACGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.37, T:0.31
Consensus pattern (15 bp):
GTGTGGCACTTGCCC
Found at i:77724738 original size:43 final size:41
Alignment explanation
Indices: 77724675--77724828 Score: 191
Period size: 42 Copynumber: 3.7 Consensus size: 41
77724665 TATCGTACCA
* *
77724675 ATGCCATATCTCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATCG
* * * * * *
77724717 ATGCTAATAGCCCAGCTATGGTCTTACACGAAGCCTCATATCA
1 ATGC-CATATCCCAGATATGGTCTTACATGAA-TCTCATATCG
77724760 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATCG
*
77724802 ATGCCATATCCCAAATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
77724829 CAAAATCTCA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 61 0.65
43 33 0.35
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG
Found at i:77724801 original size:85 final size:84
Alignment explanation
Indices: 77724673--77724829 Score: 242
Period size: 85 Copynumber: 1.9 Consensus size: 84
77724663 AGTATCGTAC
* * * **
77724673 CAATGCCATATCTCAGATATGGTCTTACATGTAATCTCGTATCGATGCTAATAGCCCAGCTATGG
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC-AATAGCCCAAATATGG
77724738 TCTTACACGAAGCCTCATAT
65 TCTTACACGAAGCCTCATAT
* *
77724758 CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGCCATATCCCAAATATGGT
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGCAATAGCCCAAATATGGT
77724823 CTTACAC
66 CTTACAC
77724830 AAAATCTCAA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 20 0.31
85 45 0.69
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGCAATAGCCCAAATATGGT
CTTACACGAAGCCTCATAT
Found at i:77733332 original size:27 final size:28
Alignment explanation
Indices: 77733302--77733358 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
77733292 TTTTTAAAGT
77733302 AATTGAATTAATTA-TTTTTAAAATTTG
1 AATTGAATTAATTATTTTTTAAAATTTG
77733329 AATTGAATTAATTATTTTTTAAAATTTG
1 AATTGAATTAATTATTTTTTAAAATTTG
77733357 AA
1 AA
77733359 CTGTTAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (28 bp):
AATTGAATTAATTATTTTTTAAAATTTG
Found at i:77733482 original size:52 final size:51
Alignment explanation
Indices: 77733410--77733510 Score: 116
Period size: 52 Copynumber: 1.9 Consensus size: 51
77733400 AATTACATAA
* * *
77733410 TATATAAATAAAAATGGTTAATTTTTTTA-ATTTCAAGACCAAATTGACATGT
1 TATATAAATAAAAA-GGTTAAATATTTTAGATTT-AAAACCAAATTGACATGT
*
77733462 TATATAAATATTAAAA-GTTAAATATTTTAGATTTAAAATCAAATTGACA
1 TATATAAATA--AAAAGGTTAAATATTTTAGATTTAAAACCAAATTGACA
77733511 CTATATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
52 34 0.81
53 4 0.10
54 4 0.10
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.40
Consensus pattern (51 bp):
TATATAAATAAAAAGGTTAAATATTTTAGATTTAAAACCAAATTGACATGT
Found at i:77736127 original size:22 final size:21
Alignment explanation
Indices: 77736087--77736127 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
77736077 CACTTGACAT
*
77736087 AGGGGCACACGCCTATGTGGG
1 AGGGGCACACGCCCATGTGGG
*
77736108 AGGGGCAACACGCCCCTGTG
1 AGGGGC-ACACGCCCATGTG
77736128 AGCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.29, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:77740336 original size:93 final size:92
Alignment explanation
Indices: 77740209--77740377 Score: 200
Period size: 93 Copynumber: 1.8 Consensus size: 92
77740199 TCATCTCGTA
* * * * *
77740209 GCCGATGCATGTCCCAGACATGTCTGACATTGGCT-TACGT-CTCGAGGCCGATGCATGTCCTAA
1 GCCGATGCATGTCCCAGACAGGTCTGACAATGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAA
77740272 ACATGTCTTACACAAGCCCTCGTCTCAAT
64 ACATGTCTTACACAAGCCCTCGTCTCAAT
* * * *
77740301 GCCGATGCCATGTCCTAGA-ACGGTCTTACAATGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACA-GGTCTGACAATGGCTCTCATAATGAGGCCGATGCATGTCCCAA
77740365 ACATGTCTTACAC
64 ACATGTCTTACAC
77740378 TAACTCACAC
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
92 8 0.12
93 54 0.84
94 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACAGGTCTGACAATGGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
ATGTCTTACACAAGCCCTCGTCTCAAT
Found at i:77740376 original size:46 final size:45
Alignment explanation
Indices: 77740209--77740376 Score: 114
Period size: 46 Copynumber: 3.6 Consensus size: 45
77740199 TCATCTCGTA
* * * *
77740209 GCCGATGCATGTCCCAGACATGTCTGACATTGGCTTACGTCT--CGAG
1 GCCGATGCATGTCCCAGACATGTCTTACAATGGC-T-C-TCTAATGTG
* * * *
77740255 GCCGATGCATGTCCTAAACATGTCTTACACAAGCCCTCGTCTCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACA-ATG-GCTC-TCT-AATGTG
* *
77740301 GCCGATGCCATGTCCTAGA-ACGGTCTTACAATGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACA-TGTCTTACAATGGCTCTC-TAATGTG
77740348 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
77740377 CTAACTCACA
Statistics
Matches: 97, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 60 0.62
47 28 0.29
48 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACAATGGCTCTCTAATGTG
Found at i:77746708 original size:16 final size:17
Alignment explanation
Indices: 77746687--77746718 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77746677 TAGAATTGGG
77746687 TTGAAAAATT-ATTTAA
1 TTGAAAAATTAATTTAA
77746703 TTGAAAAATTAATTTA
1 TTGAAAAATTAATTTA
77746719 TTTTAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
TTGAAAAATTAATTTAA
Found at i:77748088 original size:7 final size:7
Alignment explanation
Indices: 77748078--77748106 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
77748068 TTATCACGTC
77748078 TCACATA
1 TCACATA
77748085 TCACATA
1 TCACATA
77748092 TCACATA
1 TCACATA
77748099 TCACATA
1 TCACATA
77748106 T
1 T
77748107 TGGCGGTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.31
Consensus pattern (7 bp):
TCACATA
Found at i:77752403 original size:46 final size:48
Alignment explanation
Indices: 77752350--77752530 Score: 171
Period size: 46 Copynumber: 3.9 Consensus size: 48
77752340 ACACATTGAC
77752350 ACATCTCGTA-GCTGATGCATGTCCCAGACATGTCTTACACTGGCT-T
1 ACATCTCGTAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCT
* *
77752396 ACATCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
1 ACATCTCGTAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCT
* * * * * * *
77752443 A-GTCTC-AATGTTGATGCCATATCCTAGACATGGTTTTACACTGGCTCT
1 ACATCTCGTAGGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT
** *
77752491 -CAGAAT-GT-GGCTGATGCATGTCCCAAACATGTCTTACACT
1 ACA-TCTCGTAGGCTGATGCATGTCCCAGACATGTCTTACACT
77752531 AGCACACAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 60 0.56
47 25 0.23
48 20 0.19
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
ACATCTCGTAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCT
Found at i:77752487 original size:94 final size:92
Alignment explanation
Indices: 77752362--77752533 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
77752352 ATCTCGTAGC
* ** *
77752362 TGATGCATGTCCCAGACATGTCTTACACTGGCT-TACA-TCTCGAGGCCGATGCATGTCCCAGAC
1 TGATGCATATCCCAGACATGTCTTACACTGGCTCT-CAGAAT-GAGGCCGATGCATGTCCCAAAC
77752425 ATGTCTTACACTAGCTCTAGTCTCAATGT
64 ATGTCTTACACTAGCTCTAGTCTCAATGT
* * * *
77752454 TGATGCCATATCCTAGACATGGTTTTACACTGGCTCTCAGAATGTGGCTGATGCATGTCCCAAAC
1 TGATG-CATATCCCAGACAT-GTCTTACACTGGCTCTCAGAATGAGGCCGATGCATGTCCCAAAC
77752519 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
77752534 ACACAAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 5 0.07
93 12 0.18
94 49 0.72
95 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
TGATGCATATCCCAGACATGTCTTACACTGGCTCTCAGAATGAGGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTAGTCTCAATGT
Found at i:77757089 original size:40 final size:40
Alignment explanation
Indices: 77757034--77757215 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
77757024 TATTCGAATG
*
77757034 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
77757074 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77757114 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77757154 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
77757194 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77757216 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 114 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77760403 original size:39 final size:39
Alignment explanation
Indices: 77760310--77760404 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 39
77760300 TTTTAAGTGT
* * *
77760310 TGTGATATATACTTAAATGTTATGCAATTATATGAGTAT
1 TGTGATATATACTTAAACGTTATGCAATTATATCAGTAA
** * * * *
77760349 TACGATATGTGCTTAAACGTTATGTAATTATATCTGTAA
1 TGTGATATATACTTAAACGTTATGCAATTATATCAGTAA
*
77760388 TGTGATACATACTTAAA
1 TGTGATATATACTTAAA
77760405 AGTGAATATG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (39 bp):
TGTGATATATACTTAAACGTTATGCAATTATATCAGTAA
Found at i:77765778 original size:15 final size:15
Alignment explanation
Indices: 77765752--77765789 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
77765742 ATTTATTATT
77765752 TTAATTTT-AATTAA
1 TTAATTTTCAATTAA
77765766 TTAATTTTCAATTAA
1 TTAATTTTCAATTAA
*
77765781 ATAATTTTC
1 TTAATTTTC
77765790 TCAATCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAATTTTCAATTAA
Found at i:77769640 original size:46 final size:45
Alignment explanation
Indices: 77769533--77769765 Score: 175
Period size: 46 Copynumber: 4.9 Consensus size: 45
77769523 CGACCGCATT
* *
77769533 ATGAGAGCCAGTGTAAGACCATGTTTGGGAAATGGCATCGGCATTGAG
1 ATGAGAG-CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAG
* * *
77769581 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGTATTGGCCTTGAG
1 ATGAGAGC-AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG
* *
77769627 ATGTA-AGGCAGTGTAAGACATGTCTGGGACATGCATCAGC-TACGAG
1 ATG-AGA-GCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAG
**** ** *
77769673 ATG-TTTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAT
1 ATGAGAGCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAG
* *
77769719 ATGTGAGAGCTAGCGTAAGACCATGTCTGGGACATGGCATCGTCATT
1 A--TGAGAGC-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT
77769766 ATACCCTATG
Statistics
Matches: 149, Mismatches: 24, Indels: 22
0.76 0.12 0.11
Matches are distributed among these distances:
44 9 0.06
45 15 0.10
46 59 0.40
47 16 0.11
48 18 0.12
50 32 0.21
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (45 bp):
ATGAGAGCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG
Found at i:77780722 original size:47 final size:47
Alignment explanation
Indices: 77780668--77780829 Score: 225
Period size: 47 Copynumber: 3.4 Consensus size: 47
77780658 TTAGGATTTT
* *
77780668 ATGTGATGAATGTGAACGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCA
*
77780715 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-GTGTATATAT--GTGATAAGGCCGAATGGCCA
** **
77780766 ATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCA
77780813 ATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAAC
77780830 ATGCGTATGT
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
47 53 0.51
48 1 0.01
49 14 0.14
50 1 0.01
51 34 0.33
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:77780819 original size:22 final size:22
Alignment explanation
Indices: 77780746--77780819 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
77780736 ATATATATGC
77780746 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * ** *
77780768 GTGATGAATG-TGAACACGCGTATAT
1 GTGAT-AAGGCCGAA-TGGC-CA-AT
77780793 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
77780815 GTGAT
1 GTGAT
77780820 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 15 0.41
23 6 0.16
24 6 0.16
25 10 0.27
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:77780843 original size:23 final size:23
Alignment explanation
Indices: 77780813--77780957 Score: 104
Period size: 23 Copynumber: 6.2 Consensus size: 23
77780803 CGAATGGCCA
77780813 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
77780836 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
77780859 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
77780883 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
77780906 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
77780930 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
77780953 ATGTG
1 ATGTG
77780958 TGATAAGGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 28
0.68 0.12 0.21
Matches are distributed among these distances:
21 2 0.02
22 8 0.09
23 50 0.54
24 22 0.24
25 8 0.09
26 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Done.