Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 253 of 425
Found at i:77780848 original size:70 final size:70
Alignment explanation
Indices: 77780766--77780910 Score: 272
Period size: 70 Copynumber: 2.1 Consensus size: 70
77780756 CGAATGGCCA
77780766 ATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
77780831 TGCGT
66 TGCGT
* *
77780836 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
77780901 TGCGT
66 TGCGT
77780906 ATGTG
1 ATGTG
77780911 TGATAAGGCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.27
Consensus pattern (70 bp):
ATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGT
Found at i:77780881 original size:117 final size:117
Alignment explanation
Indices: 77780741--77780957 Score: 407
Period size: 117 Copynumber: 1.9 Consensus size: 117
77780731 CCTGTATATA
77780741 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGA
77780806 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGATGAATGTGAACATGCG
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGATGAATGTGAACATGCG
* * *
77780858 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGA
77780923 ATGGCCAATGTGATGAATGTGAACATGCGTATGTG
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTG
77780958 TGATAAGGCT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 97 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (117 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCGTATGTGATGAATGTGAACATGCG
Found at i:77780888 original size:47 final size:47
Alignment explanation
Indices: 77780836--77781073 Score: 395
Period size: 47 Copynumber: 5.1 Consensus size: 47
77780826 GAACATGCGT
77780836 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77780883 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
77780930 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
77780977 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
77781024 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77781071 ATG
1 ATG
77781074 CGAAATGTGT
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:77780974 original size:164 final size:166
Alignment explanation
Indices: 77780667--77780997 Score: 513
Period size: 164 Copynumber: 2.0 Consensus size: 166
77780657 TTTAGGATTT
* *
77780667 TATGTGATGAATGTGAACGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
1 TATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
*
77780732 CTGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGA
66 C--TATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGA
77780797 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
129 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * * *
77780835 TATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
1 TATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
* * * * *
77780899 C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 CTATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATA
*
77780963 AGGCTGAATGGCCAATGTGATGAATGTGAACATGC
131 AGGCCGAATGGCCAATGTGATGAATGTGAACATGC
77780998 ATATATGAGA
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
164 91 0.61
167 1 0.01
168 58 0.39
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (166 bp):
TATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
CTATACATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATATGTGATA
AGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:77781183 original size:46 final size:46
Alignment explanation
Indices: 77781047--77781183 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
77781037 GAACATGTAT
* *
77781047 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
77781093 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
77781139 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
77781184 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:77781513 original size:37 final size:37
Alignment explanation
Indices: 77781368--77781515 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
77781358 ATGGTGACTA
* * *
77781368 TGTCTGGGTAAGACCCGATGACTACGTGTGGAGACTA
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77781405 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77781442 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* * *
77781479 TGTTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77781516 CATCTGAGCT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:77784935 original size:19 final size:21
Alignment explanation
Indices: 77784911--77784950 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
77784901 CCACCTATTA
77784911 TTTATTTTTAT-TTT-TTTAT
1 TTTATTTTTATCTTTATTTAT
77784930 TTTATTTTTATCTTTATTTAT
1 TTTATTTTTATCTTTATTTAT
77784951 ATTTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 3 0.16
21 5 0.26
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTATTTTTATCTTTATTTAT
Found at i:77784945 original size:12 final size:11
Alignment explanation
Indices: 77784911--77784955 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
77784901 CCACCTATTA
77784911 TTTATTTTTA-
1 TTTATTTTTAT
77784921 -TT-TTTTTAT
1 TTTATTTTTAT
77784930 TTTATTTTTAT
1 TTTATTTTTAT
*
77784941 CTTTATTTATAT
1 -TTTATTTTTAT
77784953 TTT
1 TTT
77784956 GAAATTAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
8 6 0.20
9 2 0.07
10 2 0.07
11 10 0.33
12 10 0.33
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:77784972 original size:6 final size:6
Alignment explanation
Indices: 77784906--77784955 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
77784896 TATAACCACC
* * *
77784906 TATTATT TATTTT TATTTT TTTATTT TATTTT TATCTT TATTTA TATTTT
1 TATT-TT TATTTT TATTTT TAT-TTT TATTTT TATTTT TATTTT TATTTT
77784956 GAAATTAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
6 27 0.75
7 9 0.25
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:77792126 original size:46 final size:46
Alignment explanation
Indices: 77792073--77792340 Score: 228
Period size: 46 Copynumber: 5.7 Consensus size: 46
77792063 TTATTTGTGT
*
77792073 GCCAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGGGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGGGATGTAA
*
77792119 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGGGATGTAA
* * *
77792163 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGG-GATGT-A-A
* * ** *
77792213 GCTAGTATAAGACCATGTCTGGGACATGGCATC-GC-CTTGATTTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGGGA-TGT-A-A
* * *
77792261 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATG--A
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCG--GGATGTAA
*
77792308 GCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATC
77792341 AGCATTATAC
Statistics
Matches: 185, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.06
45 18 0.10
46 51 0.28
47 33 0.18
48 36 0.19
49 3 0.02
50 30 0.16
51 1 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGGGATGTAA
Found at i:77792291 original size:48 final size:47
Alignment explanation
Indices: 77792075--77792340 Score: 221
Period size: 48 Copynumber: 5.7 Consensus size: 47
77792065 ATTTGTGTGC
* * * *
77792075 CAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGGGATGT-A-AGC
1 CAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCT--TGATTTGATAGT
* * **
77792121 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG-T-GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCT-TGATTTGATAGT
* *
77792165 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GC-CTTGAT-T-TGATAGT
*
77792214 CTAGTATAAGACCATGTCTGGGACATGGCATCGCCTTGATTTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGA-TTTGATAGT
* * *
77792263 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-TGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGATTTGAT-AGT
*
77792310 CAGTGTAAGACCATGTTTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
77792341 AGCATTATAC
Statistics
Matches: 185, Mismatches: 20, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.08
45 18 0.10
46 38 0.21
47 33 0.18
48 44 0.24
49 7 0.04
50 31 0.17
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGATTTGATAGT
Found at i:77792334 original size:95 final size:93
Alignment explanation
Indices: 77792070--77792340 Score: 279
Period size: 95 Copynumber: 2.9 Consensus size: 93
77792060 GGGTTATTTG
* * *
77792070 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCG--GGATGTAAGCCAGTGTAAGA
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCA-TCGACTCGATGGATG--AGCCAGTGTAAGA
*
77792131 -CATGTCTGGGACAT-GCATCGGCTACGAGA
63 CCATGTCTGGGACATGGCATCGCCTACGAGA
* * * *
77792160 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGA-GAGCTAGTATAAG
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTC-G--ATG-GATGAGCCAGTGTAAG
* **
77792224 ACCATGTCTGGGACATGGCATCGCCT-TGATTT
62 ACCATGTCTGGGACATGGCATCGCCTACGA-GA
*
77792256 TGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGAC
1 TG-T-GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCCAGTGTAAGAC
*
77792321 CATGTTTGGGACATGGCATC
64 CATGTCTGGGACATGGCATC
77792341 AGCATTATAC
Statistics
Matches: 151, Mismatches: 16, Indels: 23
0.79 0.08 0.12
Matches are distributed among these distances:
90 14 0.09
91 18 0.12
92 4 0.03
94 13 0.09
95 51 0.34
96 12 0.08
97 4 0.03
98 35 0.23
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (93 bp):
TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCCAGTGTAAGACCA
TGTCTGGGACATGGCATCGCCTACGAGA
Found at i:77793110 original size:46 final size:48
Alignment explanation
Indices: 77793031--77793197 Score: 181
Period size: 46 Copynumber: 3.6 Consensus size: 48
77793021 TGTGCCAGTT
* *
77793031 TAAGA-CATGTCTGGGACAT-GTATTGGCCT-CGAGATGTAAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATGTAAGCTAGTG
*
77793077 TAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGATGT--G-TCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCT-AGTG
*
77793121 TAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATGT-A-AGCTAGTG
*
77793171 TAAGACCATGTTTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
77793198 TCATTATACC
Statistics
Matches: 105, Mismatches: 6, Indels: 16
0.83 0.05 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.10
45 18 0.17
46 44 0.42
50 31 0.30
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCTAGTG
Found at i:77802715 original size:30 final size:30
Alignment explanation
Indices: 77802679--77802809 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
77802669 GACAAGATTG
* * * * *
77802679 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
77802709 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
77802737 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77802767 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77802796 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77802810 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:77802770 original size:58 final size:58
Alignment explanation
Indices: 77802679--77802809 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
77802669 GACAAGATTG
* * * * * *
77802679 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
77802737 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
77802796 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77802810 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:77810665 original size:30 final size:30
Alignment explanation
Indices: 77810629--77810759 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
77810619 GACAAGATTG
* * * * *
77810629 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
77810659 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
77810687 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77810717 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77810746 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77810760 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:77810720 original size:58 final size:58
Alignment explanation
Indices: 77810629--77810759 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
77810619 GACAAGATTG
* * * * * *
77810629 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
77810687 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
77810746 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77810760 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:77812545 original size:6 final size:6
Alignment explanation
Indices: 77812534--77812571 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
77812524 TTTTAGTTAG
77812534 TTTTAT TTTTAT TTTTAT TTTTAT TTTT-T TTTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT-AT TT
77812572 CAATTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 5 0.17
6 22 0.73
7 3 0.10
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:77823003 original size:34 final size:35
Alignment explanation
Indices: 77822938--77823003 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
77822928 GTGTTGCTTC
*
77822938 GTAGAGCCAGTAGACCATTTCCATGGTGTCGCCCT
1 GTAGAGCCAGTAGACCATTTCCATGGCGTCGCCCT
*
77822973 GTAGAGCCTGTAGACCATTT-CATGGCGTCGC
1 GTAGAGCCAGTAGACCATTTCCATGGCGTCGC
77823004 TTTATAGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 10 0.34
35 19 0.66
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (35 bp):
GTAGAGCCAGTAGACCATTTCCATGGCGTCGCCCT
Found at i:77823012 original size:34 final size:34
Alignment explanation
Indices: 77822939--77823027 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 34
77822929 TGTTGCTTCG
* * *
77822939 TAGAGCCAGTAGACCATTTCCATGGTGTCGCCCTG
1 TAGAGCCTGTAGACCATTT-CATGGCGTCGCCCTA
**
77822974 TAGAGCCTGTAGACCATTTCATGGCGTCGCTTTA
1 TAGAGCCTGTAGACCATTTCATGGCGTCGCCCTA
* * *
77823008 TAGAGCTTGTAAACTATTTC
1 TAGAGCCTGTAGACCATTTC
77823028 CACAATGTCA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
34 28 0.61
35 18 0.39
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (34 bp):
TAGAGCCTGTAGACCATTTCATGGCGTCGCCCTA
Found at i:77836053 original size:50 final size:50
Alignment explanation
Indices: 77835978--77836077 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
77835968 ACATCTCCCC
*
77835978 AATTGGAGTCGATAAACGACATATTAGTCTTTCAATCAGTTTGCTCATTT
1 AATTGGAGTCGATAAACGACATATTAGTCTTTCAATCAATTTGCTCATTT
77836028 AATTGGAGTCGATAAACGACATATTAGTCTTTCAATCAATTTGCTCATTT
1 AATTGGAGTCGATAAACGACATATTAGTCTTTCAATCAATTTGCTCATTT
77836078 CTGAGTAGAC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (50 bp):
AATTGGAGTCGATAAACGACATATTAGTCTTTCAATCAATTTGCTCATTT
Found at i:77839361 original size:25 final size:25
Alignment explanation
Indices: 77839332--77839382 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
77839322 CAAAGGAAAA
**
77839332 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
77839357 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
77839382 T
1 T
77839383 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:77844025 original size:25 final size:25
Alignment explanation
Indices: 77843996--77844046 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
77843986 CAAAGGAAAA
**
77843996 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
77844021 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
77844046 T
1 T
77844047 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:77846250 original size:2 final size:2
Alignment explanation
Indices: 77846245--77846283 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
77846235 GAAAAAAAGA
77846245 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77846284 AATTTATCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:77846451 original size:17 final size:16
Alignment explanation
Indices: 77846421--77846472 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
77846411 GGGCATAGTT
77846421 ATAAAATTAATATTTTA
1 ATAAAATT-ATATTTTA
**
77846438 ATAATCTTATTATTATT-
1 ATAAAATTA-TATT-TTA
77846455 ATAAAATTATATTTTA
1 ATAAAATTATATTTTA
77846471 AT
1 AT
77846473 GTAAAAAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
15 2 0.07
16 7 0.25
17 17 0.61
18 2 0.07
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
ATAAAATTATATTTTA
Found at i:77847410 original size:35 final size:34
Alignment explanation
Indices: 77847371--77847477 Score: 90
Period size: 35 Copynumber: 3.0 Consensus size: 34
77847361 GGTTTTAGGG
* *
77847371 TTAGGGTTTTGAAAAAATAAGTTAGGGTTTAGTGT
1 TTAGGATTTTG-AAAAATAAGTTAGGATTTAGTGT
* * * * *
77847406 TTAGGTTTTTGTTAAAACAAGTTAGGTTTTAGAGTT
1 TTAGGATTTTG-AAAAATAAGTTAGGATTTAGTG-T
*
77847442 TTAGTAGATTTT-AAAAATAAATTAGGATTTAGTGT
1 TTAG--GATTTTGAAAAATAAGTTAGGATTTAGTGT
77847477 T
1 T
77847478 GTTTTATAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
35 30 0.53
36 22 0.39
38 5 0.09
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.44
Consensus pattern (34 bp):
TTAGGATTTTGAAAAATAAGTTAGGATTTAGTGT
Found at i:77847516 original size:43 final size:42
Alignment explanation
Indices: 77847478--77847557 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
77847468 ATTTAGTGTT
**
77847478 GTTTTATAA-AAATTATTTAAATTAGGG-TTTAGGGTTTAGGG
1 GTTTTA-AATAAATTAACTAAATTAGGGTTTTAGGGTTTAGGG
77847519 GTTTTAAATAAATTAACTAAATTAGGGTTTTTAGGGTTT
1 GTTTTAAATAAATTAACTAAATTAGGG-TTTTAGGGTTT
77847558 TAAATAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 2 0.06
41 22 0.65
43 10 0.29
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (42 bp):
GTTTTAAATAAATTAACTAAATTAGGGTTTTAGGGTTTAGGG
Found at i:77847575 original size:31 final size:34
Alignment explanation
Indices: 77847574--77847671 Score: 64
Period size: 34 Copynumber: 3.0 Consensus size: 34
77847564 AATTAAGTTA
* * * * *
77847574 GGGTTTTAAATAATTTAGAATTTA-GG-ATTTAT
1 GGGTTTTAAATAAATTATAAATTAGGGTTTTTAG
*
77847606 GG-TTTTAAATAAATTAAGTAAATTAGGG-TTCTA-
1 GGGTTTTAAATAAATT-A-TAAATTAGGGTTTTTAG
*
77847639 GGGTTTTAAATAAATTA-AAGTTTAGGGTTTTTA
1 GGGTTTTAAATAAATTATAA-ATTAGGGTTTTTA
77847672 AATAAACTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
31 14 0.26
32 9 0.17
33 12 0.23
34 18 0.34
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.44
Consensus pattern (34 bp):
GGGTTTTAAATAAATTATAAATTAGGGTTTTTAG
Found at i:77847610 original size:88 final size:88
Alignment explanation
Indices: 77847518--77847709 Score: 282
Period size: 88 Copynumber: 2.2 Consensus size: 88
77847508 AGGGTTTAGG
*
77847518 GGTTTTAAATAAATTAACTAAATTAGGGTTTTTAGGGTTTTAAATAAATT-AAG-TTAGGG-TTT
1 GGTTTTAAATAAATTAACTAAATTAGGG-TTCTAGGGTTTTAAATAAATTAAAGTTTAGGGTTTT
** *
77847580 TAAATAATTTAGAATTTAGGATTTAT
65 TAAATAAACT--AAGTTAGGATTTAT
*
77847606 GGTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAAGTTTAGGGTTTTT
1 GGTTTTAAATAAATTAACTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAAGTTTAGGGTTTTT
*
77847671 AAATAAACTAAGTTAGGGTTTAT
66 AAATAAACTAAGTTAGGATTTAT
77847694 GGTTTTAAATAAATTA
1 GGTTTTAAATAAATTA
77847710 GGGTTTATGG
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
87 20 0.21
88 58 0.61
89 6 0.06
90 11 0.12
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.43
Consensus pattern (88 bp):
GGTTTTAAATAAATTAACTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAAGTTTAGGGTTTTT
AAATAAACTAAGTTAGGATTTAT
Found at i:77847647 original size:25 final size:24
Alignment explanation
Indices: 77847619--77847758 Score: 145
Period size: 25 Copynumber: 5.5 Consensus size: 24
77847609 TTTAAATAAA
*
77847619 TTAAGTAAATTAGGGTTCTAGGGTT
1 TTAAATAAATTAGGGTT-TAGGGTT
**
77847644 TTAAATAAATTAAAGTTTAGGGTTT
1 TTAAATAAATTAGGGTTTAGGG-TT
*
77847669 TTAAATAAACTAAGTTAGGGTTTATGGTT
1 TTAAAT--A--AA-TTAGGGTTTAGGGTT
*
77847698 TTAAATAAATTAGGGTTTATGGTT
1 TTAAATAAATTAGGGTTTAGGGTT
* *
77847722 TTAAATAAATTAGGGTTCTAAGATT
1 TTAAATAAATTAGGGTT-TAGGGTT
77847747 TTAAATAAATTA
1 TTAAATAAATTA
77847759 AATTAGAGTT
Statistics
Matches: 100, Mismatches: 8, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
24 37 0.37
25 41 0.41
27 2 0.02
29 10 0.10
30 10 0.10
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (24 bp):
TTAAATAAATTAGGGTTTAGGGTT
Found at i:77847648 original size:34 final size:32
Alignment explanation
Indices: 77847571--77847656 Score: 111
Period size: 34 Copynumber: 2.7 Consensus size: 32
77847561 ATAAATTAAG
* *
77847571 TTAGGGTTTTAAAT-AATTTAGAATTTAGGAT
1 TTAGGGTTTTAAATAAATTAAGAAATTAGGAT
* *
77847602 TTATGGTTTTAAATAAATTAAGTAAATTAGGGT
1 TTAGGGTTTTAAATAAATTAAG-AAATTAGGAT
77847635 TCTAGGGTTTTAAATAAATTAA
1 T-TAGGGTTTTAAATAAATTAA
77847657 AGTTTAGGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
31 13 0.28
32 6 0.13
33 9 0.19
34 19 0.40
ACGTcount: A:0.38, C:0.01, G:0.17, T:0.43
Consensus pattern (32 bp):
TTAGGGTTTTAAATAAATTAAGAAATTAGGAT
Found at i:77847709 original size:54 final size:54
Alignment explanation
Indices: 77847601--77847760 Score: 161
Period size: 54 Copynumber: 3.0 Consensus size: 54
77847591 GAATTTAGGA
* *
77847601 TTTATGGTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAAG
1 TTTAGGGTTTTAAATAAACTAAG----TTAGGGTTCTAGGGTTTTAAATAAATTAAAG
* **
77847659 TTTAGGGTTTTTAAATAAACTAAGTTAGGGTT-TATGGTTTTAAATAAATTAGGG
1 TTTAGGG-TTTTAAATAAACTAAGTTAGGGTTCTAGGGTTTTAAATAAATTAAAG
* * *
77847713 TTTATGGTTTTAAAT--A--AA-TTAGGGTTCTAAGATTTTAAATAAATTAAA
1 TTTAGGGTTTTAAATAAACTAAGTTAGGGTTCTAGGGTTTTAAATAAATTAAA
77847761 TTAGAGTTTA
Statistics
Matches: 90, Mismatches: 10, Indels: 13
0.80 0.09 0.12
Matches are distributed among these distances:
48 8 0.09
49 19 0.21
51 1 0.01
53 8 0.09
54 25 0.28
55 8 0.09
58 6 0.07
59 15 0.17
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.42
Consensus pattern (54 bp):
TTTAGGGTTTTAAATAAACTAAGTTAGGGTTCTAGGGTTTTAAATAAATTAAAG
Found at i:77847754 original size:78 final size:80
Alignment explanation
Indices: 77847619--77847799 Score: 206
Period size: 78 Copynumber: 2.2 Consensus size: 80
77847609 TTTAAATAAA
* * * *
77847619 TTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAAGTTTAGGGTTTTTAAATAAACTAAGT
1 TTAAATAAATTAGGGTT-TAGGGTTTTAAATAAATTAAAGTTTAGAGATTTTAAATAAACTAAAT
* *
77847684 TAGGGTTTATGG-T-T
65 TAGAGTTTAGGGTTAT
* ** *
77847698 TTAAATAAATTAGGGTTTATGGTTTTAAATAAATTAGGGTTCTA-AGATTTTAAATAAATTAAAT
1 TTAAATAAATTAGGGTTTAGGGTTTTAAATAAATTAAAGTT-TAGAGATTTTAAATAAACTAAAT
77847762 TAGAGTTTAGGGTTAAAT
65 TAGAGTTTAGGGTT--AT
*
77847780 TTAATTAAATTAGGGTTTAG
1 TTAAATAAATTAGGGTTTAG
77847800 TTTTTTTAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
78 47 0.55
79 19 0.22
82 19 0.22
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (80 bp):
TTAAATAAATTAGGGTTTAGGGTTTTAAATAAATTAAAGTTTAGAGATTTTAAATAAACTAAATT
AGAGTTTAGGGTTAT
Found at i:77848163 original size:126 final size:126
Alignment explanation
Indices: 77847859--77848235 Score: 555
Period size: 125 Copynumber: 3.0 Consensus size: 126
77847849 TTGTACCCTA
77847859 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
** * * * *
77847924 TG-CAAGCAAAA-TACAAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
66 TGTC-AGCAAAATTATGAAAAAAAGCTCCCACATGGATGCTCTTTTTCTATAGTAGTTCATG
* *
77847984 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGTAGGATGTAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
* *
77848049 TGTCAGCAAAATTATGAAAAAAAGCTACCACTTGGATGCTCTTTTTCTATAGTAGTTCATG
66 TGTCAGCAAAATTATGAAAAAAAGCTCCCACATGGATGCTCTTTTTCTATAGTAGTTCATG
* * * * * *
77848110 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAGCGTTTCAAGCACGATGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
*
77848175 TGTCAGCAAAATTTTTG--AAAAAGCTCCCACATGGATGCTCTTTTTCTATAGTAGTTCATG
66 TGTCAGCAAAA-TTATGAAAAAAAGCTCCCACATGGATGCTCTTTTTCTATAGTAGTTCATG
77848235 A
1 A
77848236 TTGACCTTAG
Statistics
Matches: 229, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
125 114 0.50
126 111 0.48
127 4 0.02
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
TGTCAGCAAAATTATGAAAAAAAGCTCCCACATGGATGCTCTTTTTCTATAGTAGTTCATG
Found at i:77852381 original size:25 final size:24
Alignment explanation
Indices: 77852344--77852395 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
77852334 ATTGTTATAA
* *
77852344 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
77852368 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
77852393 AAA
1 AAA
77852396 TAATATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:77852407 original size:19 final size:19
Alignment explanation
Indices: 77852384--77852439 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
77852374 ACATAAATGA
77852384 AAAAATATTAAATAATATTT
1 AAAAATATTAAATAATA-TT
* * *
77852404 AAAACT-TAAAATAA-ATG
1 AAAAATATTAAATAATATT
77852421 AAAAATATTAAATAATATT
1 AAAAATATTAAATAATATT
77852440 CAAATTTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
17 6 0.21
18 8 0.29
19 9 0.32
20 5 0.18
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAAATATTAAATAATATT
Found at i:77852432 original size:37 final size:38
Alignment explanation
Indices: 77852376--77852455 Score: 126
Period size: 37 Copynumber: 2.1 Consensus size: 38
77852366 TTAAAATTAC
*
77852376 ATAAATGAAAAAATATTAAATAATATTTAAAACTTAAA
1 ATAAATGAAAAAATATTAAATAATATTCAAAACTTAAA
**
77852414 ATAAATG-AAAAATATTAAATAATATTCAAATTTTAAA
1 ATAAATGAAAAAATATTAAATAATATTCAAAACTTAAA
77852451 ATAAA
1 ATAAA
77852456 CCGTTACCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 32 0.82
38 7 0.18
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (38 bp):
ATAAATGAAAAAATATTAAATAATATTCAAAACTTAAA
Found at i:77852444 original size:18 final size:18
Alignment explanation
Indices: 77852385--77852450 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
77852375 CATAAATGAA
77852385 AAAATATTAAATAATATTT
1 AAAATATTAAATAATA-TT
* *
77852404 AAAACT-TAAAATAA-ATGA
1 AAAA-TATTAAATAATAT-T
77852422 AAAATATTAAATAATATT
1 AAAATATTAAATAATATT
* *
77852440 CAAATTTTAAA
1 AAAATATTAAA
77852451 ATAAACCGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
17 2 0.05
18 21 0.57
19 13 0.35
20 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATATTAAATAATATT
Found at i:77852643 original size:21 final size:21
Alignment explanation
Indices: 77852610--77852653 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
77852600 TATAAAGAGT
*
77852610 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
77852631 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
77852652 TT
1 TT
77852654 GTAGAGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:77867833 original size:30 final size:30
Alignment explanation
Indices: 77867775--77867834 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77867765 TTCCCGAGCC
* *
77867775 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
77867805 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
77867835 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:77874876 original size:28 final size:29
Alignment explanation
Indices: 77874844--77874942 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
77874834 ATAATAAGCC
*
77874844 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
77874872 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
77874900 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
77874929 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77874943 CAATTCATAA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:77880425 original size:55 final size:55
Alignment explanation
Indices: 77880324--77880435 Score: 127
Period size: 55 Copynumber: 2.0 Consensus size: 55
77880314 AGTTGTGCAT
* * *
77880324 GGGTAGGCCACACGGGCGTGCGCCATGGCCGTGTTAAAATGACAGTGTCGTCCAC
1 GGGTAGGCAACACGGGCGTGCGCCAAGGCCGTGTTAAAATGACAGTGTCGCCCAC
* ** * * *
77880379 GGGTAGGCAATACGGGCGTGTTCCAAGGCCGTGTTGATAA-GTCAGTGTTGCCCAC
1 GGGTAGGCAACACGGGCGTGCGCCAAGGCCGTGTT-AAAATGACAGTGTCGCCCAC
77880434 GG
1 GG
77880436 TTGAAGGGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 44 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.21
Consensus pattern (55 bp):
GGGTAGGCAACACGGGCGTGCGCCAAGGCCGTGTTAAAATGACAGTGTCGCCCAC
Found at i:77883117 original size:71 final size:71
Alignment explanation
Indices: 77883033--77883196 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77883023 CGATTTGTCT
77883033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77883098 CTTTCA
66 CTTTCA
77883104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77883169 CTTTCA
66 CTTTCA
77883175 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77883197 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77883234 original size:71 final size:70
Alignment explanation
Indices: 77883033--77883230 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77883023 CGATTTGTCT
* * * *
77883033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77883098 CTTTCA
65 CTTTCA
* * * *
77883104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77883169 CTTTCA
65 CTTTCA
* *
77883175 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77883231 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77890697 original size:71 final size:71
Alignment explanation
Indices: 77890613--77890776 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77890603 CGATTTGTCT
77890613 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77890678 CTTTCA
66 CTTTCA
77890684 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77890749 CTTTCA
66 CTTTCA
77890755 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77890777 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77890814 original size:71 final size:70
Alignment explanation
Indices: 77890613--77890810 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77890603 CGATTTGTCT
* * * *
77890613 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77890678 CTTTCA
65 CTTTCA
* * * *
77890684 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77890749 CTTTCA
65 CTTTCA
* *
77890755 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77890811 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77893268 original size:23 final size:23
Alignment explanation
Indices: 77893242--77893287 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
77893232 GTTAAGAGTG
77893242 AAAGAGCAAGATGTACCGAAGAC
1 AAAGAGCAAGATGTACCGAAGAC
77893265 AAAGAGCAAGATGTACCGAAGAC
1 AAAGAGCAAGATGTACCGAAGAC
77893288 TGCATTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.26, T:0.09
Consensus pattern (23 bp):
AAAGAGCAAGATGTACCGAAGAC
Found at i:77898253 original size:46 final size:47
Alignment explanation
Indices: 77898104--77898375 Score: 238
Period size: 47 Copynumber: 5.8 Consensus size: 47
77898094 TAGGGGTTAT
* * * *
77898104 TGTGAGCTAGAGTAAGA-CATGTCTAGGACAT-GCATCGGC-CATATTA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC-GA-GA
* * * *
77898150 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGA
* * * *
77898198 CGAGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGTCTCGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTCGAGA
* *
77898244 CGTGAGCTAGTGAAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGA
* ** *
77898290 TGAT-AG-TCAGTGTAAGACCATGTCCGGGACATGGCATCAACTTGAGA
1 TG-TGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGA
* *
77898337 TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
77898376 ACACCTTACC
Statistics
Matches: 186, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
45 4 0.02
46 73 0.39
47 79 0.42
48 29 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGA
Found at i:77898319 original size:93 final size:94
Alignment explanation
Indices: 77898153--77898375 Score: 262
Period size: 93 Copynumber: 2.4 Consensus size: 94
77898143 CATATTATGA
*
77898153 GAGCCAGTGTAAA-ACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACA
1 GAGCCAGTG-AAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGTGCTAGTGTAAGACA
* * *
77898217 TGTCTGGGACAT-GCATCAGTCTCGAGACGT
65 TGTCCGGGACATGGCATCA-ACTCGAGACAT
* *
77898247 GAGCTAGTGAAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGA-TAG-TCAGTGTAAGA
1 GAGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACGAGT-GCT-AGTGTAAGA
* *
77898307 CCATGTCCGGGACATGGCATCAACTTGAGATAT
63 -CATGTCCGGGACATGGCATCAACTCGAGACAT
*
77898340 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGAAAGACCATGTCTGGGACATGGCATCG
77898376 ACACCTTACC
Statistics
Matches: 111, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
91 3 0.03
92 24 0.22
93 49 0.44
94 29 0.26
95 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
GAGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGTGCTAGTGTAAGACAT
GTCCGGGACATGGCATCAACTCGAGACAT
Found at i:77898359 original size:140 final size:141
Alignment explanation
Indices: 77898105--77898374 Score: 350
Period size: 140 Copynumber: 1.9 Consensus size: 141
77898095 AGGGGTTATT
* * *
77898105 GTGAGCTAGAGTAAGACATGTCTAGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAAACCA
1 GTGAGCTAGAGAAAGACATGTCTAGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAAACCA
* ** * *
77898170 TGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATC
66 TGTCCGGGACATGGCATCAACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATC
77898234 AGTCTCGAGAC
131 AGTCTCGAGAC
* * * * * *
77898245 GTGAGCTAGTGAAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACC
1 GTGAGCTAGAGAAAGACATGTCTAGGACATGCATCGGCCA-GATGATGAGAGCCAGTGTAAAACC
*
77898309 ATGTCCGGGACATGGCATCAAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATGGC
65 ATGTCCGGGACATGGCATCAACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGC
77898372 ATC
128 ATC
77898375 GACACCTTAC
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 18 0.16
140 86 0.77
141 6 0.05
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (141 bp):
GTGAGCTAGAGAAAGACATGTCTAGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAAACCA
TGTCCGGGACATGGCATCAACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATC
AGTCTCGAGAC
Found at i:77903610 original size:215 final size:216
Alignment explanation
Indices: 77903220--77903653 Score: 699
Period size: 215 Copynumber: 2.0 Consensus size: 216
77903210 TTGGTTGCCC
* ** * *
77903220 CTTCGAACCATGCATTTATCGAGGATACAGTTTGGTTCCTTAAGTATAGCTCCATCAAAACTTAT
1 CTTCAAACCATGCATTTATCGAGGATACAACTTGGTTCCTTAAGTATAACTCCATCAAAACCTAT
* * *
77903285 TTAAGGAAGAGTCAATTGAGTTAGCTACTTCCCAACATGGCGTTTAAGTTGAGACACATGGAAGG
66 TGAAGGAAGAGTCAATTGAGTTAGCTACTTCCCAACATGGCGTTTAAGCTGAGACACATGAAAGG
* *
77903350 TAGGGTGGATTTGAGTGCCTGGTGGAAATTGAAGCTTATATGCTACCTTTCCAACTTTAGCCTCC
131 TAGGGTGGATTTGAGTGCCTGGAGGAAATTGAAGCTTAAATGCTACCTTTCCAACTTTAGCCTCC
* * *
77903415 A-TAATAAAAGGACCAAAAAA
196 ACAAAAAAAAGAACCAAAAAA
77903435 CTTCAAACCATGCATTTATCGAGGATACAACTTGGTTCCTTAAGTATAACTCCATCAAAACCTAT
1 CTTCAAACCATGCATTTATCGAGGATACAACTTGGTTCCTTAAGTATAACTCCATCAAAACCTAT
* * *
77903500 TGGAGGCAGAGTCAATTGAGTTAGCTACTTTCCAACATGGCGTTTAAGCTGAGACACATGAAAGG
66 TGAAGGAAGAGTCAATTGAGTTAGCTACTTCCCAACATGGCGTTTAAGCTGAGACACATGAAAGG
* *
77903565 TAGGGTGGATTTGAGTGCCTGGAGGCAATTGGAGCTTAAATGCTACCTTTCCAACTTTAGCCTCC
131 TAGGGTGGATTTGAGTGCCTGGAGGAAATTGAAGCTTAAATGCTACCTTTCCAACTTTAGCCTCC
77903630 ACAAAAAAAAGAACCAAAAAA
196 ACAAAAAAAAGAACCAAAAAA
77903651 CTT
1 CTT
77903654 GGGACAGAGT
Statistics
Matches: 200, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
215 181 0.90
216 19 0.09
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (216 bp):
CTTCAAACCATGCATTTATCGAGGATACAACTTGGTTCCTTAAGTATAACTCCATCAAAACCTAT
TGAAGGAAGAGTCAATTGAGTTAGCTACTTCCCAACATGGCGTTTAAGCTGAGACACATGAAAGG
TAGGGTGGATTTGAGTGCCTGGAGGAAATTGAAGCTTAAATGCTACCTTTCCAACTTTAGCCTCC
ACAAAAAAAAGAACCAAAAAA
Found at i:77907155 original size:40 final size:40
Alignment explanation
Indices: 77907098--77907298 Score: 261
Period size: 40 Copynumber: 5.0 Consensus size: 40
77907088 TCGAATGATG
* * *
77907098 TCCGGGCTAAG-TCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
77907138 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
77907178 TCCGGACTAAGATCCGAAGGCATTTGTGC--GTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
77907216 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77907256 TCTGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TC-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
77907297 TC
1 TC
77907299 GGGCGATGTC
Statistics
Matches: 147, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
38 38 0.26
39 1 0.01
40 95 0.65
41 13 0.09
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77907229 original size:78 final size:78
Alignment explanation
Indices: 77907105--77907285 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 78
77907095 ATGTCCGGGC
*
77907105 TAAGTCCCGAAGGC-TCTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC---GTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGA
77907169 GTTACTAAATC-CGGA
63 GTTACTAAATCTCGGA
*
77907184 CTAAGAT-CCGAAGGCATTTGTGCGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 -TAAG-TCCCGAAGGCATTTGTGCGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAG
*
77907248 TTACTAAATCTGGGA
64 TTACTAAATCTCGGA
77907263 TAAGTCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCG
77907286 AGCTACTATA
Statistics
Matches: 94, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
77 1 0.01
78 71 0.76
79 3 0.03
80 12 0.13
81 7 0.07
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTT
ACTAAATCTCGGA
Found at i:77907310 original size:40 final size:39
Alignment explanation
Indices: 77907151--77907321 Score: 140
Period size: 40 Copynumber: 4.3 Consensus size: 39
77907141 GGACTAAGAT
* * *
77907151 CCGAAGGCAATTGTGCGAGTTACTAAATC-CGGACTAAGAT-
1 CCGAAGGCATTTGTGCGAGCTACTAAATCGGGGA-T-AG-TC
* *
77907191 CCGAAGGCATTTGTGC--GTTACTAAATC-CGGACTAAGAT-
1 CCGAAGGCATTTGTGCGAGCTACTAAATCGGGGA-T-AG-TC
* *
77907229 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGATAAGTC
1 CCGAAGGCATTTGTGCGAGCTACTAAATCGGGGAT-AGTC
77907269 CCGAAGGCATTTGTGCGAGCTACTATAATCGGGCGAT-GTC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCGGG-GATAGTC
*
77907309 CCGAAGGTATTTG
1 CCGAAGGCATTTG
77907322 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
38 38 0.32
39 1 0.01
40 69 0.57
41 9 0.08
42 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCGGGGATAGTC
Found at i:77913620 original size:19 final size:19
Alignment explanation
Indices: 77913583--77913620 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
77913573 ACTTGTCAGA
*
77913583 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
77913602 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
77913621 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:77916925 original size:33 final size:32
Alignment explanation
Indices: 77916883--77916944 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
77916873 GCTTGCCCTC
*
77916883 AAAAAAACTAAAC-GAAAGCAAAATAAAAACCA
1 AAAAAAACTAAACAGAAAACAAAA-AAAAACCA
77916915 AAAACAAACTAAACAGAAAACAAAAAAAAA
1 AAAA-AAACTAAACAGAAAACAAAAAAAAA
77916945 TTCAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 4 0.15
33 14 0.52
34 9 0.33
ACGTcount: A:0.76, C:0.15, G:0.05, T:0.05
Consensus pattern (32 bp):
AAAAAAACTAAACAGAAAACAAAAAAAAACCA
Found at i:77918156 original size:13 final size:13
Alignment explanation
Indices: 77918121--77918149 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
77918111 TAAAACTATG
77918121 AAAAAC-TAGAAT
1 AAAAACATAGAAT
77918133 AAAAACATAGAAT
1 AAAAACATAGAAT
77918146 AAAA
1 AAAA
77918150 TAATAGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (13 bp):
AAAAACATAGAAT
Found at i:77919345 original size:17 final size:18
Alignment explanation
Indices: 77919303--77919351 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
77919293 AGTTGAAAAG
77919303 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
77919322 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
77919339 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
77919352 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:77920233 original size:40 final size:40
Alignment explanation
Indices: 77920167--77920333 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77920157 AAATTGAATG
* * *
77920167 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
77920206 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
77920246 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
77920286 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
77920326 ATATCCGG
1 ATATCCGG
77920334 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77927339 original size:17 final size:18
Alignment explanation
Indices: 77927297--77927345 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
77927287 AGTTGAAAAG
77927297 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
77927316 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
77927333 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
77927346 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:77928227 original size:40 final size:40
Alignment explanation
Indices: 77928161--77928327 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77928151 AAATTGAATG
* * *
77928161 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
77928200 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
77928240 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
77928280 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
77928320 ATATCCGG
1 ATATCCGG
77928328 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77938130 original size:59 final size:59
Alignment explanation
Indices: 77938038--77938154 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
77938028 GTTAGATAAA
77938038 CAAAACTCCAATCTTCCAAATATCGAATACCATACTCTGGTTGAGTGGGGCATAGCCAG
1 CAAAACTCCAATCTTCCAAATATCGAATACCATACTCTGGTTGAGTGGGGCATAGCCAG
*
77938097 CAAAACTCCAATCTTCCAAATATTGAATACCATACTCTGGTTGAGTGGGGCATAGCCA
1 CAAAACTCCAATCTTCCAAATATCGAATACCATACTCTGGTTGAGTGGGGCATAGCCA
77938155 TACACTCCCT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (59 bp):
CAAAACTCCAATCTTCCAAATATCGAATACCATACTCTGGTTGAGTGGGGCATAGCCAG
Found at i:77943459 original size:24 final size:23
Alignment explanation
Indices: 77943419--77943463 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
77943409 ATTTATTTAC
77943419 TTATTATTTAAGAAATAATAATTA
1 TTATTATTTAAGAAAT-ATAATTA
*
77943443 TTATTA-TTAAGTTAATATAAT
1 TTATTATTTAAG-AAATATAAT
77943464 AATATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
TTATTATTTAAGAAATATAATTA
Found at i:77944168 original size:45 final size:46
Alignment explanation
Indices: 77944118--77944228 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 46
77944108 CGACTACTGT
*
77944118 TACTGTTACCGTTACTGTTACCA-ATTCGA-CACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCATATT-GAGCACTTTGTGTGTCGAA
* * * *
77944163 TACTGTTACTGTTATTGTTA-CATATTTAGCACTTTTTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCATATTGAGCACTTTGTGTGTCGAA
77944208 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
77944229 TGCTACTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 3 0.05
45 54 0.95
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (46 bp):
TACTGTTACTGTTACTGTTACCATATTGAGCACTTTGTGTGTCGAA
Found at i:77944219 original size:6 final size:6
Alignment explanation
Indices: 77944208--77944255 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
77944198 TTGTGTTGAA
* * *
77944208 TACTGT TACTGT TACTGT TACTGC TACTGC TACCGT TACTGAT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG
77944256 ATTAGGTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.42
Consensus pattern (6 bp):
TACTGT
Found at i:77946156 original size:44 final size:45
Alignment explanation
Indices: 77946100--77946409 Score: 272
Period size: 47 Copynumber: 6.8 Consensus size: 45
77946090 TATACGTGCT
* *
77946100 GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCTTA-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAAATCTTAGGCC
* * **
77946144 GATGCGTGTCCCAGACACGTCTTACACTGGCTA-TTATCGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACAAATC-TT-AGGCC
* * * *
77946191 GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTA-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAAATCTTAGGCC
* * *
77946235 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATC-GAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-A-CA-AATCTTAGGCC
* * ** * *
77946282 GATGCATGTCCTAGACATGTCTTACATTGGCACTCATCTCTACGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAAATCT-TAGGCC
* *
77946328 GATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATAAT-GT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA--CA-AATCTTAGGCC
*
77946376 AATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCACA
77946410 CAAGAAATCC
Statistics
Matches: 212, Mismatches: 38, Indels: 32
0.75 0.13 0.11
Matches are distributed among these distances:
44 67 0.32
45 6 0.03
46 28 0.13
47 90 0.42
48 17 0.08
49 1 0.00
50 1 0.00
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACAAATCTTAGGCC
Found at i:77946208 original size:91 final size:91
Alignment explanation
Indices: 77946100--77946409 Score: 408
Period size: 91 Copynumber: 3.4 Consensus size: 91
77946090 TATACGTGCT
*
77946100 GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCTTAGTCGATGCGTGTCCCAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCTTAGTCGATGCATGTCCCAGACACGTC
* *
77946165 TTACACTGGCTATTATCGTTGAGGCC
66 TTACACTGGCTATCATCATTGAGGCC
* *
77946191 GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTAGTCGATGCATGTCCCAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCTTAGTCGATGCATGTCCCAGACACGTC
*
77946256 TTACACTGGCTATCATCATCGAGGCC
66 TTACACTGGCTATCATCATTGAGGCC
* * * **
77946282 GATGCATGTCCTAGACATGTCTTACATTGGCACTCATCTCTACGTCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCT-TA-GTCGATG-CATGTCCCAGACA-
* * * *
77946347 GGTCTTATACTGGC-ACTCAT-AATGTGGCC
62 CGTCTTACACTGGCTA-TCATCATTGAGGCC
* *
77946376 AATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACA
77946410 CAAGAAATCC
Statistics
Matches: 194, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
91 119 0.61
92 2 0.01
93 7 0.04
94 50 0.26
95 16 0.08
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAAATCTTAGTCGATGCATGTCCCAGACACGTC
TTACACTGGCTATCATCATTGAGGCC
Found at i:77952816 original size:55 final size:55
Alignment explanation
Indices: 77952710--77952830 Score: 143
Period size: 55 Copynumber: 2.2 Consensus size: 55
77952700 AGCCCATGTG
* * * *
77952710 CAACACTGACTTCAACACACGGCCATGGCACACACCCATGTTACCTGCCCGTGTA
1 CAACACTGACTTCAACACACGACCATGGCACACACCCATATGACCTACCCGTGTA
* * * * * *
77952765 CGACACTGACTTTAAGACACGACCATGGCACACGCCCCTATGGCCTACCCGTGTA
1 CAACACTGACTTCAACACACGACCATGGCACACACCCATATGACCTACCCGTGTA
*
77952820 CAACATTGACT
1 CAACACTGACT
77952831 AAAAGTTTAA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.19
Consensus pattern (55 bp):
CAACACTGACTTCAACACACGACCATGGCACACACCCATATGACCTACCCGTGTA
Found at i:77953750 original size:47 final size:47
Alignment explanation
Indices: 77953590--77953949 Score: 210
Period size: 47 Copynumber: 7.7 Consensus size: 47
77953580 AGGATAAGTT
* * * * * *
77953590 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATATACG-T
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCAT-CAT-CGAG
* * ** * *
77953640 GCTGATGCATGTCCCAGACATGTCTTACACAAGC-A-CAAC-TCTTA-
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATC-GAG
* *
77953684 GCCGATGCGTGTCCCAGACACGTCTTACCCTGGCTATCATCATCGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAG
* * * * *
77953731 GCCGATGCATGTCCTAGACATGTCTTACACTAG-TA-CAAC-TCTTA-
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATC-GAG
*
77953775 GCCGATG--TGTCTCCTAGACACGTCTTACACTGGCTATCATTATCGAG
1 GCCGATGCATGTC-CC-AGACACGTCTTACACTGGCTATCATCATCGAG
* ** * * *
77953822 GTCGATGCATGTCCCAGACATATCTTACACTAGC-ACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAG
* * * * *
77953868 ACCGATGCCATGTCCCAGACATGGTCTTATACTGG-TACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATCGAG
* *
77953916 GCTGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
77953950 ACACAAGAAA
Statistics
Matches: 239, Mismatches: 50, Indels: 45
0.72 0.15 0.13
Matches are distributed among these distances:
42 4 0.02
43 2 0.01
44 54 0.23
45 7 0.03
46 31 0.13
47 84 0.35
48 33 0.14
49 18 0.08
50 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAG
Found at i:77953750 original size:91 final size:91
Alignment explanation
Indices: 77953590--77953952 Score: 374
Period size: 91 Copynumber: 3.9 Consensus size: 91
77953580 AGGATAAGTT
* * * * * * *
77953590 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATATACG-TGCTGATGCATGTCC
1 GCCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCATA-AT-CGAGGCCGATGCATGTCC
*
77953654 CAGACATGTCTTACACAAGCACAACTCTTA
62 CAGACATGTCTTACACTAGCACAACTCTTA
* * *
77953684 GCCGATGCGTGTCCCAGACACGTCTTACCCTGGCTATCATCATCGAGGCCGATGCATGTCCTAGA
1 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
*
77953749 CATGTCTTACACTAGTACAACTCTTA
66 CATGTCTTACACTAGCACAACTCTTA
* * * * *
77953775 GCCGATGTGTCTCCTAGACACGTCTTACACTGGCTATCATTATCGAGGTCGATGCATGTCCCAGA
1 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
* *
77953840 CATATCTTACACTAGCAC-TCATCTCTA
66 CATGTCTTACACTAGCACAAC-TCT-TA
* * * * * *
77953867 CACCGATGCCATGTCCCAGACATGGTCTTATACTGG-TACTCATAAT-GTGGCTGATGCATGTCC
1 -GCCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCC
*
77953930 CAGACATGTCTTACACTGGCACA
62 CAGACATGTCTTACACTAGCACA
77953953 CAAGAAATCC
Statistics
Matches: 226, Mismatches: 35, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
90 3 0.01
91 119 0.53
92 17 0.08
93 18 0.08
94 52 0.23
95 17 0.08
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACAACTCTTA
Found at i:77967796 original size:49 final size:49
Alignment explanation
Indices: 77967622--77967875 Score: 358
Period size: 47 Copynumber: 5.3 Consensus size: 49
77967612 CCCTTCGGGA
* * * * * * *
77967622 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77967669 CCTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77967716 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77967763 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
77967812 CTTATCACATATATACACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
77967861 CTTATAACATATATA
1 CTTATCACATATATA
77967876 TATCTCATAC
Statistics
Matches: 192, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 95 0.49
48 3 0.02
49 94 0.49
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77972028 original size:40 final size:40
Alignment explanation
Indices: 77971984--77972135 Score: 243
Period size: 40 Copynumber: 3.8 Consensus size: 40
77971974 CCAGCATGAT
* *
77971984 TGCTCTTCGGGACCTAG-CCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACTAGCACGAA
77972024 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
77972064 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
77972104 TGCTCTTCGGAATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
77972136 CTCAACTCTC
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 104 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:77979155 original size:25 final size:25
Alignment explanation
Indices: 77979127--77979205 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
77979117 ACTCGGCCCT
*
77979127 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
77979152 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
77979174 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
77979199 ATCACAT
1 ATCACAT
77979206 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:77979251 original size:49 final size:49
Alignment explanation
Indices: 77979077--77979378 Score: 465
Period size: 47 Copynumber: 6.3 Consensus size: 49
77979067 CCCTTCGGGA
* * * * * * *
77979077 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77979124 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77979171 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77979218 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77979267 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77979316 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77979364 CTTATCACATATATA
1 CTTATCACATATATA
77979379 TATCTCATAC
Statistics
Matches: 241, Mismatches: 8, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
47 95 0.39
48 51 0.21
49 95 0.39
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77983091 original size:40 final size:40
Alignment explanation
Indices: 77983007--77983092 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
77982997 AGCTATTAAT
** * *
77983007 ATATAGCCGAAGCTATTCTGATTCGCACACTAAATGCTAT
1 ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
*
77983047 ATATAGCCGAAGCTA-TCTCGAAACGCACACTAAGTGCCAA
1 ATATAGCCGAAGCTATTCT-GAAACGCACACTAAATGCCAA
77983087 ATATAG
1 ATATAG
77983093 TCGATTTGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (40 bp):
ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
Found at i:77986668 original size:25 final size:25
Alignment explanation
Indices: 77986640--77986718 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
77986630 ACTCGGCCCT
*
77986640 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
77986665 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
77986687 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
77986712 ATCACAT
1 ATCACAT
77986719 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:77986764 original size:49 final size:49
Alignment explanation
Indices: 77986590--77986891 Score: 465
Period size: 47 Copynumber: 6.3 Consensus size: 49
77986580 CCCTTCGGGA
* * * * * * *
77986590 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77986637 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77986684 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77986731 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77986780 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77986829 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77986877 CTTATCACATATATA
1 CTTATCACATATATA
77986892 TATCTCATAC
Statistics
Matches: 241, Mismatches: 8, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
47 95 0.39
48 51 0.21
49 95 0.39
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77990603 original size:40 final size:40
Alignment explanation
Indices: 77990519--77990604 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
77990509 AGCTATTAAT
** * *
77990519 ATATAGCCGAAGCTATTCTGATTCGCACACTAAATGCTAT
1 ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
*
77990559 ATATAGCCGAAGCTA-TCTCGAAACGCACACTAAGTGCCAA
1 ATATAGCCGAAGCTATTCT-GAAACGCACACTAAATGCCAA
77990599 ATATAG
1 ATATAG
77990605 TCGATTTGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (40 bp):
ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
Found at i:77996480 original size:25 final size:25
Alignment explanation
Indices: 77996452--77996530 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
77996442 ACTCGGCCCT
*
77996452 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
77996477 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
77996499 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
77996524 ATCACAT
1 ATCACAT
77996531 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:77996576 original size:49 final size:49
Alignment explanation
Indices: 77996402--77996703 Score: 465
Period size: 47 Copynumber: 6.3 Consensus size: 49
77996392 CCCTTCGGGA
* * * * * * *
77996402 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77996449 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77996496 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77996543 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77996592 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77996641 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
77996689 CTTATCACATATATA
1 CTTATCACATATATA
77996704 TATCTCATAC
Statistics
Matches: 241, Mismatches: 8, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
47 95 0.39
48 51 0.21
49 95 0.39
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78000421 original size:40 final size:40
Alignment explanation
Indices: 78000337--78000422 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
78000327 AGCTATTAAT
** * *
78000337 ATATAGCCGAAGCTATTCTGATTCGCACACTAAATGCTAT
1 ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
*
78000377 ATATAGCCGAAGCTA-TCTCGAAACGCACACTAAGTGCCAA
1 ATATAGCCGAAGCTATTCT-GAAACGCACACTAAATGCCAA
78000417 ATATAG
1 ATATAG
78000423 TCGATTTGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (40 bp):
ATATAGCCGAAGCTATTCTGAAACGCACACTAAATGCCAA
Found at i:78008276 original size:14 final size:16
Alignment explanation
Indices: 78008252--78008283 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
78008242 GAGATGGTAT
78008252 GTTGAATTATAT-TTG
1 GTTGAATTATATCTTG
78008267 GTTG-ATTATATCTTG
1 GTTGAATTATATCTTG
78008282 GT
1 GT
78008284 ATGTGAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.22, C:0.03, G:0.22, T:0.53
Consensus pattern (16 bp):
GTTGAATTATATCTTG
Found at i:78009373 original size:23 final size:23
Alignment explanation
Indices: 78009328--78009373 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
78009318 ACCAAGAGTC
* *
78009328 AAAAGGAGCCAAAAACGAGCAAA
1 AAAAGGAGACAAAAACGACCAAA
* *
78009351 AAAAGGGGACAAAAAGGACCAAA
1 AAAAGGAGACAAAAACGACCAAA
78009374 TCGAGAAGAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.15, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAAGGAGACAAAAACGACCAAA
Found at i:78010441 original size:37 final size:37
Alignment explanation
Indices: 78010400--78010474 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
78010390 AATTAGTTAA
78010400 TTACTTTAGATAATTAGTTTAAAAACCCTTTTATTCT
1 TTACTTTAGATAATTAGTTTAAAAACCCTTTTATTCT
78010437 TTACTTTAGATAATTAGTTTAAAAACCCTTTTATTCT
1 TTACTTTAGATAATTAGTTTAAAAACCCTTTTATTCT
78010474 T
1 T
78010475 AGGCTAGATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.05, T:0.49
Consensus pattern (37 bp):
TTACTTTAGATAATTAGTTTAAAAACCCTTTTATTCT
Found at i:78015863 original size:14 final size:13
Alignment explanation
Indices: 78015844--78015922 Score: 81
Period size: 14 Copynumber: 5.8 Consensus size: 13
78015834 TCCTCCTATC
78015844 TTTTTATTCTTATT
1 TTTTTATT-TTATT
78015858 TTTTTATTTTATT
1 TTTTTATTTTATT
78015871 TATTTTATTTTATT
1 T-TTTTATTTTATT
*
78015885 TTTAT-TTTTATT
1 TTTTTATTTTATT
78015897 TTCATTTCAATTTTA-T
1 TT--TTT--ATTTTATT
78015913 TTTTTATTTT
1 TTTTTATTTT
78015923 GCAAGACATA
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
12 14 0.25
13 9 0.16
14 26 0.46
16 3 0.05
17 5 0.09
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:78015867 original size:6 final size:6
Alignment explanation
Indices: 78015844--78015922 Score: 61
Period size: 6 Copynumber: 12.7 Consensus size: 6
78015834 TCCTCCTATC
* * *
78015844 TTTTTA TTCTTA TTTTTT TATTTTA TTTATTT TATTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA T-TTTTA TTT-TTA T-TTTTA TTTTTA TTTTTA
* * *
78015895 TTTTCA -TTTCA ATTTTA TTTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTT
78015923 GCAAGACATA
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
5 5 0.08
6 36 0.61
7 16 0.27
8 2 0.03
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:78015895 original size:12 final size:12
Alignment explanation
Indices: 78015844--78015922 Score: 61
Period size: 13 Copynumber: 6.3 Consensus size: 12
78015834 TCCTCCTATC
*
78015844 TTTTTATTCTTA
1 TTTTTATTTTTA
*
78015856 TTTTTTTATTTTA
1 TTTTTAT-TTTTA
*
78015869 TTTATTTTATTTTA
1 TTT-TTAT-TTTTA
78015883 TTTTTATTTTTA
1 TTTTTATTTTTA
* *
78015895 TTTTCA-TTTCA
1 TTTTTATTTTTA
*
78015906 ATTTTATTTTTTA
1 TTTTTA-TTTTTA
78015919 TTTT
1 TTTT
78015923 GCAAGACATA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
11 8 0.15
12 16 0.30
13 17 0.31
14 13 0.24
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:78015922 original size:5 final size:5
Alignment explanation
Indices: 78015845--78015915 Score: 67
Period size: 5 Copynumber: 13.8 Consensus size: 5
78015835 CCTCCTATCT
78015845 TTTTA TTCTTA -TTT- TTTTA TTTTA -TTTA TTTTA TTTTA TTTTTA TTTTTA
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA
*
78015895 TTTTCA TTTCAA TTTTA TTTT
1 TTTT-A TTT-TA TTTTA TTTT
78015916 TTATTTTGCA
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
4 9 0.16
5 26 0.46
6 22 0.39
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:78028267 original size:43 final size:42
Alignment explanation
Indices: 78028216--78028372 Score: 197
Period size: 43 Copynumber: 3.6 Consensus size: 42
78028206 CCGGTATTTC
**
78028216 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCAGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACC-GCATTATA
* * * * *
78028259 GCTTGCTAGGCCCGAGGCCCGATATTATCTCACCGGTATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACC-GCATTATA
*
78028302 ACCTGCTAGGCCCGAAGCCCGATATCATTTCACCGACATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCG-CATTATA
*
78028345 GCCTGCTAGGCTCGAAGCCCGTATATCA
1 GCCTGCTAGGCCCGAAGCCCG-ATATCA
78028373 CATTTTGATA
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.93
44 6 0.06
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (42 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGCATTATA
Found at i:78028321 original size:86 final size:86
Alignment explanation
Indices: 78028203--78028370 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
78028193 CTGAATTCAT
** ** *
78028203 TCACCGGTATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC-AGCATTATAGCTTGCTA
1 TCACCGGTATTTAACCTGCTAGGCCCGAAGCCCGATATCATTTCACCGA-CATTATAGCCTGCTA
*
78028267 GGCCCGAGGCCCG-ATATTATC
65 GGCCCGAAGCCCGTATATTATC
78028288 TCACCGGTATTATAACCTGCTAGGCCCGAAGCCCGATATCATTTCACCGACATTATAGCCTGCTA
1 TCACCGGTATT-TAACCTGCTAGGCCCGAAGCCCGATATCATTTCACCGACATTATAGCCTGCTA
*
78028353 GGCTCGAAGCCCGTATAT
65 GGCCCGAAGCCCGTATAT
78028371 CACATTTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 11 0.15
86 57 0.78
87 5 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (86 bp):
TCACCGGTATTTAACCTGCTAGGCCCGAAGCCCGATATCATTTCACCGACATTATAGCCTGCTAG
GCCCGAAGCCCGTATATTATC
Found at i:78029032 original size:216 final size:216
Alignment explanation
Indices: 78028658--78029091 Score: 841
Period size: 216 Copynumber: 2.0 Consensus size: 216
78028648 ATTATGATTA
78028658 TTCAACTCTTAAGCATATAACATGATCAAACACAAACACTTAAGAACTTACCTTGGATTTTATCA
1 TTCAACTCTTAAGCATATAACATGATCAAACACAAACACTTAAGAACTTACCTTGGATTTTATCA
78028723 AATAACTACGGATTGACTAATCGACTAGTTTCGCTTTCCCTTTATCCAAAATTGGCTCCTTATGC
66 AATAACTACGGATTGACTAATCGACTAGTTTCGCTTTCCCTTTATCCAAAATTGGCTCCTTATGC
78028788 TCTTGAGCTTGAATTAAACAAATTTAACTTATTGTTAATCAACTAATCAAGCATGGTATCATGAG
131 TCTTGAGCTTGAATTAAACAAATTTAACTTATTGTTAATCAACTAATCAAGCATGGTATCATGAG
78028853 TATATTCGGCTTTCACACATT
196 TATATTCGGCTTTCACACATT
*
78028874 TTCAACTCTTAAGCATATAACATGATCAAACACAAACACTTAAGAACTTACCTTGGATTTTATCG
1 TTCAACTCTTAAGCATATAACATGATCAAACACAAACACTTAAGAACTTACCTTGGATTTTATCA
*
78028939 AATAACTACGGATTGACTAATCGACTAGTTTCGCTTTCCCTTTATCCAAAATTGGCTCCTTGTGC
66 AATAACTACGGATTGACTAATCGACTAGTTTCGCTTTCCCTTTATCCAAAATTGGCTCCTTATGC
*
78029004 TCTTGAGCTTGAATTAAACAAATTTAACTTATTGTTAATCAACTAATCAAGCGTGGTATCATGAG
131 TCTTGAGCTTGAATTAAACAAATTTAACTTATTGTTAATCAACTAATCAAGCATGGTATCATGAG
78029069 TATATTCGGCTTTCACACATT
196 TATATTCGGCTTTCACACATT
78029090 TT
1 TT
78029092 AAACATAGTA
Statistics
Matches: 215, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
216 215 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (216 bp):
TTCAACTCTTAAGCATATAACATGATCAAACACAAACACTTAAGAACTTACCTTGGATTTTATCA
AATAACTACGGATTGACTAATCGACTAGTTTCGCTTTCCCTTTATCCAAAATTGGCTCCTTATGC
TCTTGAGCTTGAATTAAACAAATTTAACTTATTGTTAATCAACTAATCAAGCATGGTATCATGAG
TATATTCGGCTTTCACACATT
Found at i:78029477 original size:70 final size:70
Alignment explanation
Indices: 78029360--78029494 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 70
78029350 TAGCACATAA
* * * * *
78029360 CACCATGATTTTGTCCTAATTTGGACAGCCAATAATTTACAGTATTACTGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
78029425 CTAAG
66 CTAAG
78029430 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
78029495 TAATAAACTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
CTAAG
Found at i:78030901 original size:28 final size:25
Alignment explanation
Indices: 78030866--78030918 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
78030856 ATGTTTGACT
78030866 AGGACTATGTA-ATGAGGGATAGTCCAC
1 AGGACTAT-TAGATGA-GGA-AGTCCAC
78030893 AGGAGCTATTAGATGAGGAAGTCCAC
1 AGGA-CTATTAGATGAGGAAGTCCAC
78030919 CAAAGGTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 7 0.29
27 9 0.38
28 8 0.33
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (25 bp):
AGGACTATTAGATGAGGAAGTCCAC
Found at i:78033093 original size:20 final size:20
Alignment explanation
Indices: 78033046--78033086 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
78033036 AAAAGTAGGG
78033046 AAAGAAAGAAAGAAAGGAGA
1 AAAGAAAGAAAGAAAGGAGA
78033066 AAAGAAAG-AAGAAAGG-GA
1 AAAGAAAGAAAGAAAGGAGA
78033084 AAA
1 AAA
78033087 TTGAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGAAAGGAGA
Found at i:78034663 original size:45 final size:45
Alignment explanation
Indices: 78034612--78034722 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
78034602 CGACTACTGT
* **
78034612 TACTGTTACCGTTACTATTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
** * * * *
78034657 TACTGTTACTATTACCGTTATCGATTCAACACTTTGTGTGTTGAT
1 TACTGTTACCGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
78034702 TACTGTTACCGTTACTGTTAC
1 TACTGTTACCGTTACTGTTAC
78034723 TGTTTCGGAT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
Found at i:78034978 original size:36 final size:36
Alignment explanation
Indices: 78034890--78035172 Score: 216
Period size: 36 Copynumber: 7.6 Consensus size: 36
78034880 AAAGGTATAA
* *
78034890 AATAACTGATTATTACTGAATAATTGACTGTTACCG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTG
* * * *
78034926 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGATTGTTACTGAATAATT-GACTGTTACTG
* * * *
78034962 AATAACTGAATATTACTGAATAATTGATTATTACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTG
* *
78034998 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGATTGTTACTGAAT-AATTGACTGTTACTG
* *
78035034 AATAACTTAATTGTTACTGAAT-ATCTGA-TTTTACTG
1 AATAAC-TGATTGTTACTGAATAAT-TGACTGTTACTG
* *
78035070 AATAATTGATTGTTACTGGATAACCGATTAATTGA-TCGATACTG
1 AATAACTGATTGTTACT-G---A---A-TAATTGACT-GTTACTG
* * * * *
78035114 AATAACTGGTTATTATTAAATAATTGATTGTTACTG
1 AATAACTGATTGTTACTGAATAATTGACTGTTACTG
*
78035150 AATAACTGACTGTTACTGAATAA
1 AATAACTGATTGTTACTGAATAA
78035173 ATAATTGTTC
Statistics
Matches: 192, Mismatches: 38, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
35 14 0.07
36 127 0.66
37 23 0.12
39 1 0.01
40 1 0.01
42 1 0.01
43 5 0.03
44 20 0.10
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (36 bp):
AATAACTGATTGTTACTGAATAATTGACTGTTACTG
Found at i:78035098 original size:18 final size:18
Alignment explanation
Indices: 78034890--78035185 Score: 195
Period size: 18 Copynumber: 16.1 Consensus size: 18
78034880 AAAGGTATAA
*
78034890 AATAACTGATTATTACTG
1 AATAACTGATTGTTACTG
* * *
78034908 AATAATTGACTGTTACCG
1 AATAACTGATTGTTACTG
* * *
78034926 GATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* * *
78034944 GAT-ATTAGACTGTTACTG
1 AATAACT-GATTGTTACTG
* *
78034962 AATAACTGAATATTACTG
1 AATAACTGATTGTTACTG
* *
78034980 AATAATTGATTATTACTG
1 AATAACTGATTGTTACTG
*
78034998 AATAACTGATTGTCACTG
1 AATAACTGATTGTTACTG
* *
78035016 AATGAA-TGACTGCTACTG
1 AAT-AACTGATTGTTACTG
*
78035034 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
*
78035053 AATATCTGATT-TTACTG
1 AATAACTGATTGTTACTG
*
78035070 AATAATTGATTGTTACTG
1 AATAACTGATTGTTACTG
* *
78035088 GATAACCGATTAATTGATCGATACTG
1 AATAA-C---TGATTG-T---TACTG
* * * *
78035114 AATAACTGGTTATTATTA
1 AATAACTGATTGTTACTG
*
78035132 AATAATTGATTGTTACTG
1 AATAACTGATTGTTACTG
*
78035150 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
78035168 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
78035185 A
1 A
78035186 GAGTTAATGA
Statistics
Matches: 220, Mismatches: 44, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
17 24 0.11
18 158 0.72
19 18 0.08
21 1 0.00
22 8 0.04
23 1 0.00
25 1 0.00
26 9 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:78038818 original size:19 final size:19
Alignment explanation
Indices: 78038781--78038818 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
78038771 AAAGTGTCCA
*
78038781 GGTTCAATGTATCTAGCTT
1 GGTTCAATGTACCTAGCTT
78038800 GGTTCAATGATACCT-GCTT
1 GGTTCAATG-TACCTAGCTT
78038819 ACGTAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (19 bp):
GGTTCAATGTACCTAGCTT
Found at i:78040698 original size:24 final size:26
Alignment explanation
Indices: 78040658--78040718 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
78040648 CCATCTTCCA
*
78040658 CTTTG-TTTTTTTAAATTTCT-ATTT
1 CTTTGATTTCTTTAAATTTCTAATTT
78040682 CTTTGATTTCTTT-AATTTCTAATTT
1 CTTTGATTTCTTTAAATTTCTAATTT
* *
78040707 TTTTTATTTCTT
1 CTTTGATTTCTT
78040719 CTTTCAGGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.38
25 20 0.62
ACGTcount: A:0.16, C:0.10, G:0.03, T:0.70
Consensus pattern (26 bp):
CTTTGATTTCTTTAAATTTCTAATTT
Found at i:78044745 original size:20 final size:20
Alignment explanation
Indices: 78044708--78044745 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78044698 CACAAAATCC
*
78044708 TTGATTCAATAGATTAGAAT
1 TTGATTCAATAGACTAGAAT
78044728 TTGATTCGAAT-GACTAGA
1 TTGATTC-AATAGACTAGA
78044746 CTACATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (20 bp):
TTGATTCAATAGACTAGAAT
Found at i:78045442 original size:67 final size:67
Alignment explanation
Indices: 78045328--78045462 Score: 207
Period size: 67 Copynumber: 2.0 Consensus size: 67
78045318 TAAAAAGAAT
* * * ** *
78045328 TTCGTTCTCGAAATTTACTTGAACTAAACAAATAGGGATATTTTCGCTTCATCGCATCTTCGGCT
1 TTCGTCCTCAAAATTTACTTGAACTAAACAAATAAGGATATCATCGCTTCATCACATCTTCGGCT
78045393 TC
66 TC
*
78045395 TTCGTCCTCAAAATTTACTTGAACTAAACAAATAAGGATATCATCGCTTCATCACATCTTTGGCT
1 TTCGTCCTCAAAATTTACTTGAACTAAACAAATAAGGATATCATCGCTTCATCACATCTTCGGCT
78045460 TC
66 TC
78045462 T
1 T
78045463 CAAGTAGCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (67 bp):
TTCGTCCTCAAAATTTACTTGAACTAAACAAATAAGGATATCATCGCTTCATCACATCTTCGGCT
TC
Found at i:78047591 original size:43 final size:43
Alignment explanation
Indices: 78047543--78047692 Score: 223
Period size: 43 Copynumber: 3.5 Consensus size: 43
78047533 TATTTGAAAA
78047543 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
*
78047586 AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * * *
78047629 AAACTCCGCTAAAGATCACGATCTTTAGCGGCGCTTTTCATA-
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
78047671 AAAGCGCCGCTAAA-AGTCATGA
1 AAA-CGCCGCTAAAGA-TCATGA
78047693 AATTCAAAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 4 0.04
43 94 0.96
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
Found at i:78048930 original size:15 final size:15
Alignment explanation
Indices: 78048910--78048943 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
78048900 CTCGGATGAA
*
78048910 CAAAAATGGTACATC
1 CAAAAATGGAACATC
78048925 CAAAAATGGAACATC
1 CAAAAATGGAACATC
78048940 CAAA
1 CAAA
78048944 CATCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.15
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:78053233 original size:2 final size:2
Alignment explanation
Indices: 78053226--78053260 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
78053216 AAACCATTTA
78053226 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78053261 AAGTTTATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78053463 original size:21 final size:20
Alignment explanation
Indices: 78053439--78053489 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
78053429 AACCCTAAAT
*
78053439 CCTTAACCCCAAACACTTACA
1 CCTTAACCCC-AACACTAACA
*
78053460 CCTTAAACTCCAACACTAACA
1 CCTT-AACCCCAACACTAACA
*
78053481 CCTAAACCC
1 CCTTAACCC
78053490 TAAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.18
Consensus pattern (20 bp):
CCTTAACCCCAACACTAACA
Found at i:78053560 original size:7 final size:7
Alignment explanation
Indices: 78053548--78053608 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
78053538 AGTTAACTCC
78053548 TAAACCT
1 TAAACCT
78053555 TAAACCT
1 TAAACCT
78053562 TAAACCT
1 TAAACCT
*
78053569 TAAACCC
1 TAAACCT
78053576 TAAA--T
1 TAAACCT
*
78053581 TATATATCT
1 TA-A-ACCT
*
78053590 TAAACCA
1 TAAACCT
78053597 TAAACCT
1 TAAACCT
78053604 TAAAC
1 TAAAC
78053609 TATAATGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
5 2 0.04
6 1 0.02
7 38 0.84
8 1 0.02
9 3 0.07
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.30
Consensus pattern (7 bp):
TAAACCT
Found at i:78053921 original size:41 final size:41
Alignment explanation
Indices: 78053771--78053948 Score: 211
Period size: 41 Copynumber: 4.4 Consensus size: 41
78053761 GTTATATGAC
78053771 TTTTAGCGGCGTTTTACCAAAAGCGCCGA-TAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCC-ACTAATGCTCTGGT
* * *
78053812 TTTTTGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
* *
78053853 TTTTAGCGTCGTTTTACCAAAAGCGCCATTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
* * * **
78053893 TTTTAGCAGCGTTTTTTACTAAAA-CGCCACTATTGCTC-CAT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCACTAATGCTCTGGT
78053934 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
78053949 TGGTAAAATG
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 4 0.03
40 11 0.09
41 93 0.79
42 10 0.08
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
Found at i:78053979 original size:41 final size:41
Alignment explanation
Indices: 78053864--78053979 Score: 117
Period size: 41 Copynumber: 2.8 Consensus size: 41
78053854 TTTAGCGTCG
* * *
78053864 TTTTACCAAAAGCGCCATTAATGCTCTGTTTTTAGCAGCGTT
1 TTTTACTAAAA-CGCCACTATTGCTCTGTTTTTAGCAGCGTT
** *
78053906 TTTTACTAAAACGCCACTATTGCTCCATTTTTAGCGGCG-T
1 TTTTACTAAAACGCCACTATTGCTCTGTTTTTAGCAGCGTT
** * *
78053946 TTTTGGTAAAATGCCGCTATTGCTCTGTGTTTTA
1 TTTTACTAAAACGCCACTATTGCTCTGT-TTTTA
78053980 CAATTTTTGC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
40 23 0.38
41 28 0.46
42 10 0.16
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.41
Consensus pattern (41 bp):
TTTTACTAAAACGCCACTATTGCTCTGTTTTTAGCAGCGTT
Found at i:78058163 original size:27 final size:27
Alignment explanation
Indices: 78058133--78058187 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
78058123 CAACTATGTC
78058133 ATGAATTTGCAATAACCCATACCTAAA
1 ATGAATTTGCAATAACCCATACCTAAA
78058160 ATGAATTTGCAATAACCCATACCTAAA
1 ATGAATTTGCAATAACCCATACCTAAA
78058187 A
1 A
78058188 CATGTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (27 bp):
ATGAATTTGCAATAACCCATACCTAAA
Found at i:78058212 original size:16 final size:16
Alignment explanation
Indices: 78058184--78058216 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
78058174 ACCCATACCT
78058184 AAAACATGTCCAAAAC
1 AAAACATGTCCAAAAC
78058200 AAAACCATG-CCAAAAC
1 AAAA-CATGTCCAAAAC
78058216 A
1 A
78058217 CAATATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.58, C:0.27, G:0.06, T:0.09
Consensus pattern (16 bp):
AAAACATGTCCAAAAC
Found at i:78060317 original size:33 final size:32
Alignment explanation
Indices: 78060274--78060337 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
78060264 CTCTTCTTTT
*
78060274 CTTTTATTTTGTTTTGCTCTTCAAATTAAAACA
1 CTTTTATTTTGCTTTGCTCTTC-AATTAAAACA
* *
78060307 CTTTTGTTTTGCTTTGTTCTTCAATTAAAAC
1 CTTTTATTTTGCTTTGCTCTTCAATTAAAAC
78060338 TTTTTCTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.23, C:0.16, G:0.08, T:0.53
Consensus pattern (32 bp):
CTTTTATTTTGCTTTGCTCTTCAATTAAAACA
Found at i:78061382 original size:21 final size:19
Alignment explanation
Indices: 78061355--78061399 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
78061345 TGAAAGTACG
*
78061355 TCCAACTAGGCTCGCTTTCC
1 TCCAACT-GACTCGCTTTCC
*
78061375 TGCCAACTGACTTGCTTTCC
1 T-CCAACTGACTCGCTTTCC
78061395 TCCAA
1 TCCAA
78061400 ATAGTCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 12 0.55
21 6 0.27
ACGTcount: A:0.18, C:0.38, G:0.13, T:0.31
Consensus pattern (19 bp):
TCCAACTGACTCGCTTTCC
Found at i:78063648 original size:100 final size:100
Alignment explanation
Indices: 78063438--78063638 Score: 348
Period size: 100 Copynumber: 2.0 Consensus size: 100
78063428 TATAGTATCT
* *
78063438 AACATGATATATTGTTACATCCATTTACACTTAAATCTTACCTTTCTCAATCAATCAATAATAAA
1 AACATGATATATTGTTACATCCATTCACACTTAAATCTTACCTTTCTAAATCAATCAATAATAAA
* *
78063503 CACTTATGTTATCTCTATAAAGTAAACTTATATAC
66 CACTTATGTTATCTCCATAAAGTAAACTTAAATAC
* *
78063538 AACATGATATATTGTTACATGCATTCACGCTTAAATCTTACCTTTCTAAATCAATCAATAATAAA
1 AACATGATATATTGTTACATCCATTCACACTTAAATCTTACCTTTCTAAATCAATCAATAATAAA
78063603 CACTTATGTTATCTCCATAAAGTAAACTTAAATAC
66 CACTTATGTTATCTCCATAAAGTAAACTTAAATAC
78063638 A
1 A
78063639 TATATATATA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 95 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (100 bp):
AACATGATATATTGTTACATCCATTCACACTTAAATCTTACCTTTCTAAATCAATCAATAATAAA
CACTTATGTTATCTCCATAAAGTAAACTTAAATAC
Found at i:78065461 original size:29 final size:29
Alignment explanation
Indices: 78065429--78065563 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
78065419 ATACCCTCCG
** * *
78065429 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
78065458 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78065487 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
78065516 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78065545 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
78065564 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:78065496 original size:58 final size:58
Alignment explanation
Indices: 78065375--78065564 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
78065365 TACTCGATTT
* * * *** *
78065375 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
78065433 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
78065491 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
78065549 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
78065565 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:78067488 original size:14 final size:15
Alignment explanation
Indices: 78067464--78067496 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
78067454 TATCATCATC
78067464 TCATGTTTTCATATA
1 TCATGTTTTCATATA
*
78067479 TCAT-TTTTCATGTA
1 TCATGTTTTCATATA
78067493 TCAT
1 TCAT
78067497 CATTTTCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.55
Consensus pattern (15 bp):
TCATGTTTTCATATA
Found at i:78072090 original size:17 final size:17
Alignment explanation
Indices: 78072050--78072107 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 17
78072040 GACAACGATT
* *
78072050 TTGAAATGGAAAATGATA
1 TTGAAAT-GACAATGTTA
*
78072068 TGGAAATGACAATGTTA
1 TTGAAATGACAATGTTA
*
78072085 TTGAAATAACAAATGTTA
1 TTGAAATGAC-AATGTTA
78072103 TTGAA
1 TTGAA
78072108 TGAAATGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 16 0.47
18 18 0.53
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (17 bp):
TTGAAATGACAATGTTA
Found at i:78072101 original size:18 final size:18
Alignment explanation
Indices: 78072060--78072107 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
78072050 TTGAAATGGA
* * *
78072060 AAATGATATGGAAATGAC
1 AAATGTTATTGAAATAAC
78072078 -AATGTTATTGAAATAAC
1 AAATGTTATTGAAATAAC
78072095 AAATGTTATTGAA
1 AAATGTTATTGAA
78072108 TGAAATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.48, C:0.04, G:0.17, T:0.31
Consensus pattern (18 bp):
AAATGTTATTGAAATAAC
Found at i:78073735 original size:37 final size:37
Alignment explanation
Indices: 78073676--78073781 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
78073666 AGCTCAGACG
* *
78073676 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
78073713 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
78073750 TAATCTCCACACGTAGTCATTGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
78073782 AGAATATATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78074055 original size:48 final size:48
Alignment explanation
Indices: 78073931--78074067 Score: 213
Period size: 50 Copynumber: 2.8 Consensus size: 48
78073921 GCACATCGCC
*
78073931 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
78073979 TATTTATATTTTACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TA--CATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
78074029 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
78074068 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
48 35 0.44
49 2 0.03
50 43 0.54
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Done.