Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 258 of 425
Found at i:79372382 original size:15 final size:15
Alignment explanation
Indices: 79372362--79372423 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
79372352 AGAAAACCCA
* *
79372362 ATAGAGAAGTCCGAG
1 ATAGAGAAATCCAAG
79372377 ATAGAGAAATCCAAG
1 ATAGAGAAATCCAAG
* *
79372392 ATAAAAAAACTCCCAAG
1 ATAGAGAAA-T-CCAAG
**
79372409 ATTCAGAAATCCAAG
1 ATAGAGAAATCCAAG
79372424 TTACAATACC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 25 0.66
16 2 0.05
17 11 0.29
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.15
Consensus pattern (15 bp):
ATAGAGAAATCCAAG
Found at i:79375522 original size:28 final size:28
Alignment explanation
Indices: 79375457--79375555 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
79375447 TCATGAATTG
* * *
79375457 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
79375486 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
79375514 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
79375542 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79375556 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:79383259 original size:28 final size:28
Alignment explanation
Indices: 79383194--79383292 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
79383184 TCATGAATTG
* * *
79383194 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
79383223 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
79383251 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
79383279 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79383293 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:79389394 original size:40 final size:40
Alignment explanation
Indices: 79389320--79389543 Score: 294
Period size: 40 Copynumber: 5.6 Consensus size: 40
79389310 AACCCAAGTA
* *
79389320 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* **
79389359 CCTTCGGGTCTTAGCCCAAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
79389399 CCTTCGGGACTTAGCCCGG-TATAG-CAACTACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
79389441 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** *
79389481 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
79389521 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79389544 CATCCGAATA
Statistics
Matches: 164, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 21 0.13
40 104 0.63
41 1 0.01
42 27 0.16
43 9 0.05
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:79389467 original size:82 final size:80
Alignment explanation
Indices: 79389320--79389543 Score: 353
Period size: 82 Copynumber: 2.8 Consensus size: 80
79389310 AACCCAAGTA
* * **
79389320 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAAATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
79389384 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
79389399 CCTTCGGGACTTAGCCCGG-TATAGCAACTACTTGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACT-C--GCACAAATGCCTTCGGGACTTAGCCCGGATA
79389463 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
*
79389481 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
79389544 CATCCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
79 23 0.17
80 36 0.27
82 65 0.49
83 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:79395200 original size:40 final size:39
Alignment explanation
Indices: 79395126--79395350 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 39
79395116 TACCCAAGTA
* * *
79395126 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
79395165 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
79395205 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
*
79395248 CCTTCGGGACTTTGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
79395288 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
79395328 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79395351 CATCCAAATA
Statistics
Matches: 167, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
39 12 0.07
40 116 0.69
41 2 0.01
43 36 0.22
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:79395246 original size:83 final size:80
Alignment explanation
Indices: 79395126--79395350 Score: 353
Period size: 83 Copynumber: 2.8 Consensus size: 80
79395116 TACCCAAGTA
* * * *
79395126 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
79395190 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* *
79395205 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTTGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
79395270 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
*
79395288 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
79395351 CATCCAAATA
Statistics
Matches: 133, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
79 12 0.09
80 44 0.33
81 1 0.01
82 1 0.01
83 75 0.56
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:79398209 original size:152 final size:148
Alignment explanation
Indices: 79397945--79398388 Score: 544
Period size: 152 Copynumber: 3.0 Consensus size: 148
79397935 ATTTTTTTTT
* * *
79397945 AAAAAGG-GAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTTAGTGATTTTAAAGAAAAG
1 AAAAAGGAGAAAGTTTAGGTTTTAAAAAATAAAAATCTGTTTTTTTTAGTCATTTTAAAGAAAAG
79398008 TTTAAATTTTTAAAACAATAGTTTTTTTTCAACTATTTCAAATAAAAGCTTTAATCTTTAAGAAA
66 TTTAAATTTTTAAAACAATA-TTTTTTTTCAACTATTTCAAATAAAAGCTTTAATCTTTAAGAAA
*
79398073 AATAGTGTTTTTTTTTTTTTAAA
130 AATAATG----TTTTTTTTTAAA
* *
79398096 AAAAAGGAGAAACTTTAGGTTTTAAAAAATAAAAATCTGTTTTTTTTTGTCATTTTAAAGAAAAG
1 AAAAAGGAGAAAGTTTAGGTTTTAAAAAATAAAAATCTGTTTTTTTTAGTCATTTTAAAGAAAAG
79398161 TTTAAATTTTTAAAACAAT-TTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCTTTAAGAAA
66 TTTAAATTTTTAAAACAATATTTTTTTTCAACTATTTCAAA-TAAAAGCTTTAATCTTTAAGAAA
79398225 AATAATGTTTTTTTTTAAA
130 AATAATGTTTTTTTTTAAA
* * * * * *
79398244 AAAAGGGAGAAAGTTTA-GATTTGAAAAATAAAAATC--TATTTTTTAGTCA-TTTAGAGGAAAG
1 AAAAAGGAGAAAGTTTAGGTTTTAAAAAATAAAAATCTGTTTTTTTTAGTCATTTTAAAGAAAAG
* * * *
79398305 TTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCGAAAT-AAAGTTTTGATTTTT
66 TTTAAATTTTTAAAA-CAA----T-ATTTTTTTTCAACTATTTC-AAATAAAAGCTTTAATCTTT
* * *
79398369 AAGAAGAGTAATATTTTTTT
124 AAGAAAAATAATGTTTTTTT
79398389 AAAAGAAAAC
Statistics
Matches: 261, Mismatches: 21, Indels: 23
0.86 0.07 0.08
Matches are distributed among these distances:
144 25 0.10
145 13 0.05
147 17 0.07
148 27 0.10
149 1 0.00
150 29 0.11
151 47 0.18
152 60 0.23
153 42 0.16
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (148 bp):
AAAAAGGAGAAAGTTTAGGTTTTAAAAAATAAAAATCTGTTTTTTTTAGTCATTTTAAAGAAAAG
TTTAAATTTTTAAAACAATATTTTTTTTCAACTATTTCAAATAAAAGCTTTAATCTTTAAGAAAA
ATAATGTTTTTTTTTAAA
Found at i:79398993 original size:16 final size:16
Alignment explanation
Indices: 79398957--79398987 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79398947 ATTTGTCTTT
*
79398957 ATTTATTTTTATGTTC
1 ATTTATATTTATGTTC
79398973 ATTTATATTTATGTT
1 ATTTATATTTATGTT
79398988 TTTTTACACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (16 bp):
ATTTATATTTATGTTC
Found at i:79410460 original size:40 final size:40
Alignment explanation
Indices: 79410378--79410561 Score: 237
Period size: 40 Copynumber: 4.5 Consensus size: 40
79410368 ACCCAAGTAT
* * * *
79410378 CTTCGGGATTTAG-CCGAATATAGCAACTCGCACAAATAC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
79410417 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
79410457 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
* *
79410500 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
79410540 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
79410562 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.09
40 78 0.61
41 1 0.01
43 36 0.28
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:79410513 original size:83 final size:83
Alignment explanation
Indices: 79410403--79410557 Score: 265
Period size: 83 Copynumber: 1.9 Consensus size: 83
79410393 GAATATAGCA
* * *
79410403 ACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTT
1 ACTCGCACAAATACCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTT
79410468 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
* *
79410486 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATACCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTT
79410551 AGCCCGG
66 AGCCCGG
79410558 ATATCATCCG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (83 bp):
ACTCGCACAAATACCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTT
AGCCCGGGTATAGCAACT
Found at i:79414021 original size:26 final size:26
Alignment explanation
Indices: 79413986--79414042 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
79413976 AAGATTTGAG
*
79413986 ACTT-TGTGATCTGAATATACATGAC
1 ACTTCTGTGATCCGAATATACATGAC
79414011 ACTTCTGTGATCCGAATATACATGAC
1 ACTTCTGTGATCCGAATATACATGAC
79414037 ACTTCT
1 ACTTCT
79414043 CACCAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (26 bp):
ACTTCTGTGATCCGAATATACATGAC
Found at i:79418492 original size:40 final size:40
Alignment explanation
Indices: 79418415--79418597 Score: 237
Period size: 40 Copynumber: 4.5 Consensus size: 40
79418405 ACCCAAGTAT
* *
79418415 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
79418454 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
79418494 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
* *
79418537 CTTC-GGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
*
79418576 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
79418598 CATCCGAATA
Statistics
Matches: 126, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 26 0.21
40 64 0.51
41 1 0.01
42 22 0.17
43 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:79418574 original size:82 final size:80
Alignment explanation
Indices: 79418415--79418597 Score: 262
Period size: 82 Copynumber: 2.3 Consensus size: 80
79418405 ACCCAAGTAT
* *
79418415 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
79418479 CACTAGCATAAATGC
66 AACTAGCACAAATGC
*
79418494 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTC-GGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
79418558 AGTAACTTGCACAAATGC
63 AGTAACTAGCACAAATGC
*
79418576 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
79418598 CATCCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
79 12 0.13
80 10 0.11
81 1 0.01
82 51 0.55
83 18 0.20
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGC
Found at i:79419536 original size:26 final size:26
Alignment explanation
Indices: 79419500--79419551 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
79419490 CCTAAAGAAC
79419500 TTGGTGATGAGTTCAAATTAATCTAA
1 TTGGTGATGAGTTCAAATTAATCTAA
79419526 TTGGTGATGAGTTCAAATTAATCTAA
1 TTGGTGATGAGTTCAAATTAATCTAA
79419552 CATTTCAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (26 bp):
TTGGTGATGAGTTCAAATTAATCTAA
Found at i:79423303 original size:6 final size:6
Alignment explanation
Indices: 79423292--79423316 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79423282 CATTTATGTT
79423292 TTCATC TTCATC TTCATC TTCATC T
1 TTCATC TTCATC TTCATC TTCATC T
79423317 GTTGAATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCATC
Found at i:79424863 original size:17 final size:19
Alignment explanation
Indices: 79424841--79424875 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79424831 GATATGATAC
79424841 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
79424858 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
79424876 ATCAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:79425191 original size:19 final size:19
Alignment explanation
Indices: 79425166--79425275 Score: 190
Period size: 19 Copynumber: 5.9 Consensus size: 19
79425156 AATCATATAT
79425166 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
79425185 ACTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
79425203 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
79425220 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
79425239 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
79425258 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
79425276 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 15 0.17
19 55 0.64
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:79425681 original size:45 final size:45
Alignment explanation
Indices: 79425626--79425899 Score: 290
Period size: 45 Copynumber: 6.1 Consensus size: 45
79425616 GGAAGGCGAT
*
79425626 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
79425671 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
**
79425716 ATCTGCT-TCTTAAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
79425760 ATCTGTTATCTCTGATTTGCTCCCCTTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * *
79425805 ATCTG-TCAT-TTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGCT-ATCTTT-GATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
*
79425850 ATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTAT--CTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
79425897 ATC
1 ATC
79425900 ATCTTGAATC
Statistics
Matches: 188, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.03
44 48 0.26
45 106 0.56
46 1 0.01
47 15 0.08
48 7 0.04
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:79425747 original size:89 final size:90
Alignment explanation
Indices: 79425626--79425809 Score: 291
Period size: 89 Copynumber: 2.1 Consensus size: 90
79425616 GGAAGGCGAT
**
79425626 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCT-TCGATCTG
1 ATCTGCTATCTTAAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTG
79425690 CTCCCCGTCTAATACAGAGACGCCAA
65 CTCCCCGTCTAATACAGAGACGCCAA
* *
79425716 ATCTGCT-TCTTAAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGC
1 ATCTGCTATCTTAAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGC
* *
79425780 TCCCCTTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
79425805 ATCTG
1 ATCTG
79425810 TCATTTTGGA
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
89 79 0.91
90 8 0.09
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTAAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:79426055 original size:78 final size:78
Alignment explanation
Indices: 79425839--79426029 Score: 321
Period size: 78 Copynumber: 2.4 Consensus size: 78
79425829 ATGTAAACAC
*
79425839 ATGAAGGTCAGATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
79425904 TGAATCTGCTTCA
66 TGAATCTGCTTCA
* * *
79425917 AT-AAGGGTCATATCTGCTGTGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATC
1 ATGAA-GGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
79425981 TTGGATCTGCTTCA
65 TTGAATCTGCTTCA
79425995 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
79426030 TTTGTCGAAT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
77 2 0.02
78 100 0.96
79 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGAATCTGCTTCA
Found at i:79426378 original size:220 final size:219
Alignment explanation
Indices: 79425997--79426711 Score: 1141
Period size: 220 Copynumber: 3.3 Consensus size: 219
79425987 CTGCTTCAAT
* **
79425997 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTTTGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
79426062 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATTATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
79426127 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
* *
79426192 GATCTACTTCGATGTGAAGATATCT
196 GATCTACTTCGATGTGAA-ACATCC
* *
79426217 GAAGGTTAGATCTTCTATGTCTTCGATCTGCTTTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * **
79426282 TTCGATTTGTTCTTTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAACGTAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
79426347 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCT-C--GTCAA-TGCAAGGATGCCAAATCATCTT
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACT-CAAGGATGCCAAATCATCTT
79426408 GGATCTACTTCGATGTGAAACATCC
195 GGATCTACTTCGATGTGAAACATCC
*
79426433 GAAGGTTAAATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
79426498 TTCGATTTGTTCTCTGACAGTACAGAGATACCAAATCATCTTAGATCTGCTTCAACATAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
* * * *
79426563 TGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTATAAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
* *
79426628 AATCTACTTCGATGTAAAAACATCC
196 GATCTACTTCGATGT-GAAACATCC
* * **
79426653 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
79426712 ATCTTGGATC
Statistics
Matches: 456, Mismatches: 33, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
216 158 0.35
217 45 0.10
219 39 0.09
220 214 0.47
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (219 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAACACG
TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
GATCTACTTCGATGTGAAACATCC
Found at i:79426782 original size:78 final size:78
Alignment explanation
Indices: 79426653--79427039 Score: 618
Period size: 78 Copynumber: 5.0 Consensus size: 78
79426643 AAAAACATCC
*
79426653 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
79426718 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
79426731 GAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
79426795 GGGTCTGCTTCAAT
65 GGATCTGCTTCAAT
*
79426809 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
79426874 AATCTGCTTCAAT
66 GATCTGCTTCAAT
** *
79426887 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTTCGT-TGAATATAGAGATGCCAAATCATCTT
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATCATCTT
*
79426951 GGATCTGCTTTAAT
65 GGATCTGCTTCAAT
* *
79426965 GAAGGTCTA-ATTTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
79427029 GGATCTGCTTC
65 GGATCTGCTTC
79427040 GATGTGAAAA
Statistics
Matches: 283, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
77 3 0.01
78 277 0.98
79 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:79435578 original size:18 final size:17
Alignment explanation
Indices: 79435548--79435581 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79435538 GATATGATAC
*
79435548 TAAAATTATTAAAAAAT
1 TAAAAATATTAAAAAAT
79435565 TAAAAATATATAAAAAA
1 TAAAAATAT-TAAAAAA
79435582 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAATATTAAAAAAT
Found at i:79435871 original size:22 final size:21
Alignment explanation
Indices: 79435836--79435893 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
79435826 AAAAGGTATC
* * *
79435836 TACAAATTAAATCTCTTAGAT
1 TACAAATCATATCTCTAAGAT
79435857 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
79435880 TGCATATCATATCT
1 TACAAATCATATCT
79435894 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:79435896 original size:19 final size:19
Alignment explanation
Indices: 79435872--79435908 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
79435862 AATCATATCT
79435872 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
79435891 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
79435909 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:79435916 original size:17 final size:19
Alignment explanation
Indices: 79435875--79435916 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
79435865 CATATCTTCT
*
79435875 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
79435894 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
79435911 AAGATT
1 AAGATT
79435917 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:79437696 original size:146 final size:145
Alignment explanation
Indices: 79437524--79437797 Score: 374
Period size: 146 Copynumber: 1.9 Consensus size: 145
79437514 TTTTATGATG
* * *
79437524 AAAAATTTAAGATTTACTACAAATTGT-TAAATTTCAATT-AGATATTGAATTTTACTCAATTCT
1 AAAAATTTAAGATTTACTACAAATTGTCAAAATTTCAATTGA-AGATTGAATTTTACCCAATTCT
* *
79437587 TTATTT-TTTTCCATACTCTAAAATAATTATATTACATTAGTGACACTTTCTATAATTTGCCCAT
65 GTATTTCTTTT-CATAC-CTAAAATAATTATATTACATTAGTAACACTTTCTATAATTTGCCCAT
79437651 TTTATTAATTTACAACTA
128 TTTATTAATTTACAACTA
* * * * *
79437669 AAAAATATTCAGATTTATTACATATTGTCAAAATTTCAGTTGAAGATTGATTTTTACCCAATTCT
1 AAAAAT-TTAAGATTTACTACAAATTGTCAAAATTTCAATTGAAGATTGAATTTTACCCAATTCT
* * *
79437734 GTATTTCTTTTCATACCTAAAATAATTATATTATATTAGTAACACTTTTTATAGTTTGCCCATT
65 GTATTTCTTTTCATACCTAAAATAATTATATTACATTAGTAACACTTTCTATAATTTGCCCATT
79437798 CTTTGCGTAC
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
145 6 0.05
146 62 0.55
147 39 0.35
148 5 0.04
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (145 bp):
AAAAATTTAAGATTTACTACAAATTGTCAAAATTTCAATTGAAGATTGAATTTTACCCAATTCTG
TATTTCTTTTCATACCTAAAATAATTATATTACATTAGTAACACTTTCTATAATTTGCCCATTTT
ATTAATTTACAACTA
Found at i:79438903 original size:17 final size:19
Alignment explanation
Indices: 79438881--79438917 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
79438871 AATTTACTTT
79438881 AAATTA-AAT-TATTTTTA
1 AAATTATAATGTATTTTTA
*
79438898 AAATTATAATGTTTTTTTA
1 AAATTATAATGTATTTTTA
79438917 A
1 A
79438918 TTATTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
AAATTATAATGTATTTTTA
Found at i:79441442 original size:17 final size:17
Alignment explanation
Indices: 79441420--79441455 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
79441410 GATATTCTCT
79441420 TCTGAATGTGTCAGCAG
1 TCTGAATGTGTCAGCAG
79441437 TCTGAATGTGTCAGCAG
1 TCTGAATGTGTCAGCAG
79441454 TC
1 TC
79441456 ATGTTAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (17 bp):
TCTGAATGTGTCAGCAG
Found at i:79443287 original size:16 final size:16
Alignment explanation
Indices: 79443266--79443296 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79443256 ATTTAACAAC
*
79443266 ATTCGCTCCCATCCCG
1 ATTCGCTACCATCCCG
79443282 ATTCGCTACCATCCC
1 ATTCGCTACCATCCC
79443297 TAACTTAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.48, G:0.10, T:0.26
Consensus pattern (16 bp):
ATTCGCTACCATCCCG
Found at i:79444178 original size:38 final size:38
Alignment explanation
Indices: 79444135--79444210 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
79444125 ATTAATATAT
*
79444135 TATGTAATATTATATCATCTATTATATTTAGCTATTAA
1 TATGTAATACTATATCATCTATTATATTTAGCTATTAA
79444173 TATGTAATACTATATCATCTATTATATTTAGCTATTAA
1 TATGTAATACTATATCATCTATTATATTTAGCTATTAA
79444211 AATTTACTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (38 bp):
TATGTAATACTATATCATCTATTATATTTAGCTATTAA
Found at i:79446504 original size:47 final size:48
Alignment explanation
Indices: 79446338--79446579 Score: 215
Period size: 47 Copynumber: 5.0 Consensus size: 48
79446328 CATGGCAACA
* *
79446338 TGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATTGCATCGGAGAG
1 TGTGATATGTGA-TTCCGTATAAGACCATAGCTGGGATATGGCATC---GAG
* * * *
79446390 ATGTGATTATGTGCTTCCGTATAAGACCATATCTGGAATGTGGCATC-AG
1 -TGTGA-TATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
* * * * *
79446439 TGTGATATATGCTACTGTATAAGACCATATCTGGGATATGGCATC-AG
1 TGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
* * *
79446486 TGAGATATGTGATT-C-TGTAAGACCATAGCTGGGCA-ATGGCATCGATA
1 TGTGATATGTGATTCCGTATAAGACCATAGCTGGG-ATATGGCATCGA-G
* * * *
79446533 TGTGATATGTGATTACGTGTAAGACCATAGCTTGGCTATGGCATCGA
1 TGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGA
79446580 TATATAAATA
Statistics
Matches: 160, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
45 24 0.15
46 2 0.01
47 60 0.38
48 6 0.04
49 29 0.18
53 33 0.21
54 6 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
Found at i:79446596 original size:42 final size:43
Alignment explanation
Indices: 79446549--79446663 Score: 146
Period size: 42 Copynumber: 2.7 Consensus size: 43
79446539 ATGTGATTAC
*
79446549 GTGTAAGACCATAGCTTGGCTATGGCATCGA-TATATAAATAT
1 GTGTAAGACCATAGCTTGGCTATGGCATCGATTATATAAAGAT
* * *
79446591 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTTGGCTATGGCATCGATTATATAAAGAT
* *
79446633 TTGTAAGACCATAG-TTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTTG-GCTATGGCATCGA
79446664 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 3 0.05
42 59 0.94
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATAGCTTGGCTATGGCATCGATTATATAAAGAT
Found at i:79447389 original size:22 final size:26
Alignment explanation
Indices: 79447345--79447396 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
79447335 AAATTGATTC
79447345 ATAAATGTATTAAAATGTTGGTGA-AA
1 ATAAATGTATTAAAATG-TGGTGAGAA
79447371 ATAAATG-ATT-AAATG-GGTGAGAA
1 ATAAATGTATTAAAATGTGGTGAGAA
79447394 ATA
1 ATA
79447397 TGGCTTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.20
23 5 0.20
24 5 0.20
25 3 0.12
26 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (26 bp):
ATAAATGTATTAAAATGTGGTGAGAA
Found at i:79447920 original size:15 final size:17
Alignment explanation
Indices: 79447902--79447933 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79447892 TCATATCATA
79447902 TAATA-TTTA-ATATAT
1 TAATAGTTTATATATAT
79447917 TAATAGTTTATATATAT
1 TAATAGTTTATATATAT
79447934 ATATATGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 4 0.27
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TAATAGTTTATATATAT
Found at i:79450722 original size:21 final size:22
Alignment explanation
Indices: 79450684--79450725 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79450674 GTCACACGGT
*
79450684 CGTGTGCCTCTCTTTACATGGC
1 CGTGTGCCCCTCTTTACATGGC
79450706 CGTGTGCCCCT-TTTACATGG
1 CGTGTGCCCCTCTTTACATGG
79450726 GCTTTTGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.10, C:0.31, G:0.24, T:0.36
Consensus pattern (22 bp):
CGTGTGCCCCTCTTTACATGGC
Found at i:79453635 original size:17 final size:19
Alignment explanation
Indices: 79453604--79453641 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
79453594 TCGAAAAAAT
*
79453604 ATTTTTGTTATAATC-TTA
1 ATTTTTGTTAAAATCATTA
79453622 ATTTTT-TTAAAATCATTA
1 ATTTTTGTTAAAATCATTA
79453640 AT
1 AT
79453642 GATTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTTTTGTTAAAATCATTA
Found at i:79453688 original size:23 final size:26
Alignment explanation
Indices: 79453662--79453710 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
79453652 AAAGAATTAC
79453662 AAAATAATTT-TTAAA-AAAT-ATAA
1 AAAATAATTTGTTAAACAAATGATAA
*
79453685 AAAATATTTTGTTAAACAAATGATAA
1 AAAATAATTTGTTAAACAAATGATAA
79453711 TTGTAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 5 0.23
25 4 0.18
26 4 0.18
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAATAATTTGTTAAACAAATGATAA
Found at i:79454361 original size:3 final size:3
Alignment explanation
Indices: 79454353--79454381 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
79454343 GTATTCTTTG
79454353 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
79454382 AACATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:79457448 original size:2 final size:2
Alignment explanation
Indices: 79457441--79457482 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
79457431 AGTGTTAGAA
79457441 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79457483 GTTTAGGCCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79463185 original size:40 final size:39
Alignment explanation
Indices: 79463140--79463347 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
79463130 CGGAATACAA
*
79463140 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79463180 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79463220 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
79463260 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
79463300 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79463340 CCGGATAT
1 CCGGATAT
79463348 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79463280 original size:80 final size:80
Alignment explanation
Indices: 79463140--79463346 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
79463130 CGGAATACAA
* * *
79463140 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
79463204 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
79463220 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
79463284 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
79463300 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
79463347 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:79471216 original size:40 final size:39
Alignment explanation
Indices: 79471171--79471378 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
79471161 CGGAATACAA
*
79471171 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79471211 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79471251 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
79471291 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
79471331 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79471371 CCGGATAT
1 CCGGATAT
79471379 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79471311 original size:80 final size:80
Alignment explanation
Indices: 79471171--79471377 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
79471161 CGGAATACAA
* * *
79471171 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
79471235 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
79471251 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
79471315 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
79471331 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
79471378 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:79473029 original size:8 final size:8
Alignment explanation
Indices: 79473012--79473041 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
79473002 CTAGATCGGC
79473012 AAAAGCCG
1 AAAAGCCG
*
79473020 AAAAGACG
1 AAAAGCCG
79473028 AAAAGCCG
1 AAAAGCCG
79473036 AAAAGC
1 AAAAGC
79473042 TGGCATTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.20, G:0.23, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:79473792 original size:60 final size:59
Alignment explanation
Indices: 79473668--79473804 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 59
79473658 TCCAACTGTG
* **
79473668 CTGATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATA
1 CTGATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATCAATA
* *
79473727 CTGATATGGGCTAGGCCCAGTATA-CTCTGTTAC-TGTA-AGGGGCTATGGCCCAGATCAATA
1 CTGATATGGGCTAGGCCCAATATATCTC-G--ACTTGTATA-GGGCTACGGCCCAGATCAATA
*
79473787 TTGATATGGGCTAAGGCC
1 CTGATATGGGCT-AGGCC
79473805 AGTTAACACT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
58 3 0.04
59 24 0.36
60 33 0.49
61 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (59 bp):
CTGATATGGGCTAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATCAATA
Found at i:79477135 original size:40 final size:40
Alignment explanation
Indices: 79477089--79477167 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
79477079 GTTTTGATAT
* *
79477089 TTTCTCTTCTTCCATTCCCTTTC-CTTCTTC-TTTTCTTTTC
1 TTTCTC-TC-TCCATTCACTTTCTCCTCTTCTTTTTCTTTTC
*
79477129 TTTCTCTCTCCATTTACTTTCTCCTCTTCTTTTTCTTTT
1 TTTCTCTCTCCATTCACTTTCTCCTCTTCTTTTTCTTTT
79477168 TTCCCTCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 11 0.32
39 8 0.24
40 15 0.44
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (40 bp):
TTTCTCTCTCCATTCACTTTCTCCTCTTCTTTTTCTTTTC
Found at i:79477166 original size:18 final size:17
Alignment explanation
Indices: 79477124--79477166 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
79477114 TCTTCTTTTC
79477124 TTTTCTTTCTCTCTCCA
1 TTTTCTTTCTCTCTCCA
* * *
79477141 TTTACTTTCTCCTCTTCT
1 TTTTCTTTCT-CTCTCCA
79477159 TTTTCTTT
1 TTTTCTTT
79477167 TTTCCCTCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.05, C:0.30, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTCTTTCTCTCTCCA
Found at i:79478720 original size:60 final size:59
Alignment explanation
Indices: 79478607--79478747 Score: 162
Period size: 60 Copynumber: 2.4 Consensus size: 59
79478597 CCCAACTGTG
* * * *
79478607 CTGATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATA
1 CTGATATGGGCTAGGCCCAGTATATCTCGACTTGTATAGGGCTACGACCCAGATTAATA
*
79478666 CTGATATGGGCTAGGCCCAGTATA-CTCTGTTA-TTGTA-AGGGGCTATGACCCAGATTAATA
1 CTGATATGGGCTAGGCCCAGTATATCTC-G--ACTTGTATA-GGGCTACGACCCAGATTAATA
*
79478726 TTGATATGGGCTAAGGCCCAGT
1 CTGATATGGGCT-AGGCCCAGT
79478748 TAACACTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
58 3 0.04
59 24 0.34
60 34 0.48
61 10 0.14
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (59 bp):
CTGATATGGGCTAGGCCCAGTATATCTCGACTTGTATAGGGCTACGACCCAGATTAATA
Found at i:79480098 original size:26 final size:28
Alignment explanation
Indices: 79480060--79480121 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 28
79480050 TTATTTTCAC
*
79480060 TATT-TTATGATTAAAATTAAT-TG-AT
1 TATTATTATCATTAAAATTAATGTGTAT
*
79480085 TATTATTATCATTAATATTAATGTGTAT
1 TATTATTATCATTAAAATTAATGTGTAT
*
79480113 TTTTATTAT
1 TATTATTAT
79480122 ATATGTACGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.13
26 15 0.48
27 2 0.06
28 10 0.32
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (28 bp):
TATTATTATCATTAAAATTAATGTGTAT
Found at i:79480296 original size:16 final size:16
Alignment explanation
Indices: 79480277--79480309 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79480267 TAGGTGTATG
79480277 TATAT-GTATATATTTA
1 TATATAGTAT-TATTTA
79480293 TATATAGTATTATTTA
1 TATATAGTATTATTTA
79480309 T
1 T
79480310 TTATTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
TATATAGTATTATTTA
Found at i:79480320 original size:13 final size:13
Alignment explanation
Indices: 79480304--79480328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79480294 ATATAGTATT
79480304 ATTTATTTATTAA
1 ATTTATTTATTAA
79480317 ATTTATTTATTA
1 ATTTATTTATTA
79480329 TTATTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTATTTATTAA
Found at i:79480331 original size:3 final size:3
Alignment explanation
Indices: 79480323--79480365 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
79480313 TTAAATTTAT
79480323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
79480366 CTAATATCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79480644 original size:37 final size:37
Alignment explanation
Indices: 79480558--79480663 Score: 119
Period size: 37 Copynumber: 2.9 Consensus size: 37
79480548 ATGTGTATAT
* * *
79480558 TCTTTTAATAGATATTATGTATATCTTTAT-ATATTA
1 TCTTTTAATATATATTATGTATATATTTTTAATATTA
*
79480594 --TTTTAACTTTATATTATGTATATATTTTTAATATTA
1 TCTTTTAA-TATATATTATGTATATATTTTTAATATTA
* * *
79480630 TCTTTTTATATATATTATGTACATATTTTCAATA
1 TCTTTTAATATATATTATGTATATATTTTTAATA
79480664 CTATTAATGC
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
34 6 0.10
35 18 0.31
36 6 0.10
37 23 0.40
38 5 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.58
Consensus pattern (37 bp):
TCTTTTAATATATATTATGTATATATTTTTAATATTA
Found at i:79480793 original size:2 final size:2
Alignment explanation
Indices: 79480786--79480842 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
79480776 TTATATGCTC
79480786 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79480827 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
79480843 TCATGATTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:79480884 original size:21 final size:20
Alignment explanation
Indices: 79480851--79480889 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79480841 ATTCATGATT
*
79480851 TTATTTCGTGTTTAATACTA
1 TTATTTCATGTTTAATACTA
79480871 TTATTATCATGTTTAATAC
1 TTATT-TCATGTTTAATAC
79480890 CATATGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (20 bp):
TTATTTCATGTTTAATACTA
Found at i:79481837 original size:19 final size:18
Alignment explanation
Indices: 79481797--79481838 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
79481787 GTGGCCGGCG
*
79481797 CCGGCGACGGACCGTGGT
1 CCGGCGACGGACCGTGGA
79481815 CCGGCGATCGGACCG-GTGA
1 CCGGCGA-CGGACCGTG-GA
79481834 CCGGC
1 CCGGC
79481839 CCATGGCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.12, C:0.36, G:0.43, T:0.10
Consensus pattern (18 bp):
CCGGCGACGGACCGTGGA
Found at i:79482384 original size:18 final size:18
Alignment explanation
Indices: 79482361--79482395 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79482351 CTATTTTTTA
*
79482361 TTATTTATTATTATTATG
1 TTATTTACTATTATTATG
*
79482379 TTATTTACTGTTATTAT
1 TTATTTACTATTATTAT
79482396 TATATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (18 bp):
TTATTTACTATTATTATG
Found at i:79482568 original size:2 final size:2
Alignment explanation
Indices: 79482561--79482586 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79482551 TTTATTCCTA
79482561 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79482587 TGTGTATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79482958 original size:2 final size:2
Alignment explanation
Indices: 79482951--79482990 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
79482941 AATACTATGT
79482951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79482991 AATTTTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79483199 original size:26 final size:28
Alignment explanation
Indices: 79483151--79483206 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
79483141 ATTATACCTA
*
79483151 TTATTTTCACTATTATCACGTAT-TATT
1 TTATTTTCAATATTATCACGTATATATT
* *
79483178 TTATTTT-AATATTATTATGTATATATT
1 TTATTTTCAATATTATCACGTATATATT
79483205 TT
1 TT
79483207 TCATATATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (28 bp):
TTATTTTCAATATTATCACGTATATATT
Found at i:79486393 original size:15 final size:15
Alignment explanation
Indices: 79486373--79486403 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
79486363 TATTGAGTCT
79486373 AGTTTTAAGAGAAAC
1 AGTTTTAAGAGAAAC
79486388 AGTTTTAAGAGAAAC
1 AGTTTTAAGAGAAAC
79486403 A
1 A
79486404 AAACAGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (15 bp):
AGTTTTAAGAGAAAC
Found at i:79498260 original size:73 final size:72
Alignment explanation
Indices: 79498064--79498368 Score: 387
Period size: 73 Copynumber: 4.1 Consensus size: 72
79498054 GTTTTTATTC
* * ** * * *
79498064 CTGTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 CTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
79498129 TCAATTT
66 TCAATTT
* * *
79498136 CTGTCTTTCAAAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTA
1 CTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
79498201 ATTTCAATTT
63 ATTTCAATTT
*
79498211 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG-AAT
1 CTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA-
79498275 TTTCAATTT
64 TTTCAATTT
79498284 CTGCTTTTCAAACAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 CTG-TTTT----C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
79498349 GTATTTTCAATTT
60 GTAATTTCAATTT
*
79498362 ATGTTTT
1 CTGTTTT
79498369 TCAATTTATA
Statistics
Matches: 204, Mismatches: 17, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
72 6 0.03
73 65 0.32
74 5 0.02
75 60 0.29
77 5 0.02
78 62 0.30
79 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (72 bp):
CTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTT
Found at i:79498333 original size:78 final size:75
Alignment explanation
Indices: 79498072--79498449 Score: 422
Period size: 78 Copynumber: 4.9 Consensus size: 75
79498062 TCCTGTTTTC
* * ** * *
79498072 AAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
79498137 TGTCTTTCA-A
66 TGT-TTTCACA
* * * *
79498147 AAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
79498212 TGTTTGT--C-
66 TGTTT-TCACA
* *
79498220 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
79498285 TGCTTTTCAAACA
66 TG-TTTTC--ACA
*
79498298 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
79498363 TGTTTTTCAATTTATA
66 TG-TTTTC-----ACA
* *
79498379 TTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACATGCTGAGGTATTTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
79498444 ATTTTC
60 AATTTC
79498450 AATTTATGTT
Statistics
Matches: 259, Mismatches: 27, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
73 62 0.24
74 5 0.02
75 59 0.23
77 1 0.00
78 69 0.27
81 2 0.01
87 61 0.24
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTCACA
Found at i:79498367 original size:151 final size:147
Alignment explanation
Indices: 79498065--79498368 Score: 439
Period size: 151 Copynumber: 2.0 Consensus size: 147
79498055 TTTTTATTCC
* * *
79498065 TGTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAATTTT
* * *
79498130 CAATTTCTGTCTTTCAAAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCT
66 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
*
79498195 GAGGTAATTTCAATTTC
131 GAGGTAATTTCAATTTA
* ** * *
79498212 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTT
1 TGTTT-TCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAATTT
79498277 TCAATTTCTG-CTTTTCAAACAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
65 TCAATTTCTGTC-TTTC--A-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
79498341 ACGCTGAGGTATTTTCAATTTA
126 ACGCTGAGGTAATTTCAATTTA
79498363 TGTTTT
1 TGTTTT
79498369 TCAATTTATA
Statistics
Matches: 139, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
147 6 0.04
148 65 0.47
150 2 0.01
151 66 0.47
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (147 bp):
TGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAATTTT
CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTTCAATTTA
Found at i:79498371 original size:14 final size:14
Alignment explanation
Indices: 79498352--79498386 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
79498342 CGCTGAGGTA
*
79498352 TTTTCAATTTATGT
1 TTTTCAATTTATAT
79498366 TTTTCAATTTATAT
1 TTTTCAATTTATAT
79498380 TTTTCAA
1 TTTTCAA
79498387 AAATCAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:79498425 original size:87 final size:87
Alignment explanation
Indices: 79498296--79498698 Score: 388
Period size: 89 Copynumber: 4.5 Consensus size: 87
79498286 GCTTTTCAAA
79498296 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
79498361 TATGTTTTTCAATTTATATTTTT
66 TATGTTTTT-AATTTATATTTTT
* *
79498384 C-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCATTT
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T-ATTT
79498448 TCAATTTATGTTTTTCAATTTATATTTTT
60 TCAATTTATGTTTTT-AATTTATATTTTT
* * *
79498477 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTA
1 C-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTC
** * * **
79498541 AAAATCTGCTTTTTAAATTA-A-GGTT
62 AATTTATG-TTTTTAATTTATATTTTT
* * * * *
79498566 CAAAGAAACCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTGAGCTATTTTC
1 CAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGC--TGAGGTATTTTC
* * * *
79498630 AATTTCTGTTTTTAATGTCTGTTTTT
62 AATTTATGTTTTTAATTTATATTTTT
* * *
79498656 -AAAAGAGTCAACTCATATTGCGACAAGTGAGTTGAG-CTCAGGA
1 CAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
79498699 TCACATGCCG
Statistics
Matches: 262, Mismatches: 33, Indels: 40
0.78 0.10 0.12
Matches are distributed among these distances:
87 54 0.21
88 17 0.06
89 82 0.31
90 4 0.02
91 15 0.06
92 7 0.03
93 34 0.13
95 39 0.15
96 1 0.00
97 9 0.03
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (87 bp):
CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
TATGTTTTTAATTTATATTTTT
Found at i:79498464 original size:14 final size:14
Alignment explanation
Indices: 79498445--79498479 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
79498435 GGTATTTTCA
*
79498445 TTTTCAATTTATGT
1 TTTTCAATTTATAT
79498459 TTTTCAATTTATAT
1 TTTTCAATTTATAT
79498473 TTTTCAA
1 TTTTCAA
79498480 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:79499306 original size:30 final size:30
Alignment explanation
Indices: 79499272--79499331 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
79499262 TAAATAACCT
79499272 AAACCCAACTA-CCCAAACCCA-AAATTAAAA
1 AAACCCAAC-AGCCC-AACCCACAAATTAAAA
*
79499302 AAACCTAACAGCCCAACCCACTAAATTAAA
1 AAACCCAACAGCCCAACCCAC-AAATTAAA
79499332 CACAAGAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 7 0.27
30 11 0.42
31 8 0.31
ACGTcount: A:0.53, C:0.33, G:0.02, T:0.12
Consensus pattern (30 bp):
AAACCCAACAGCCCAACCCACAAATTAAAA
Found at i:79500367 original size:18 final size:18
Alignment explanation
Indices: 79500344--79500378 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79500334 CTATTTTTTA
*
79500344 TTATTTATTATTATTATG
1 TTATTTACTATTATTATG
*
79500362 TTATTTACTGTTATTAT
1 TTATTTACTATTATTAT
79500379 TATATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (18 bp):
TTATTTACTATTATTATG
Found at i:79500551 original size:2 final size:2
Alignment explanation
Indices: 79500544--79500573 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
79500534 TTTATTCCTA
79500544 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79500574 TGTGTATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79500945 original size:2 final size:2
Alignment explanation
Indices: 79500938--79500968 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
79500928 AATACTATGT
79500938 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79500969 AATTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:79501177 original size:26 final size:28
Alignment explanation
Indices: 79501129--79501184 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
79501119 ATTATACCTA
*
79501129 TTATTTTCACTATTATCACGTAT-TATT
1 TTATTTTCAATATTATCACGTATATATT
* *
79501156 TTATTTT-AATATTATTATGTATATATT
1 TTATTTTCAATATTATCACGTATATATT
79501183 TT
1 TT
79501185 TCATATATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (28 bp):
TTATTTTCAATATTATCACGTATATATT
Found at i:79505604 original size:4 final size:4
Alignment explanation
Indices: 79505597--79505624 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
79505587 ATTCATTTGA
79505597 CATT CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT
79505625 GCATATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:79516245 original size:49 final size:49
Alignment explanation
Indices: 79516194--79516482 Score: 417
Period size: 49 Copynumber: 6.0 Consensus size: 49
79516184 GTATGAGTTA
*
79516194 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
79516243 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
79516292 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAA-TGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAAGTGTG
79516341 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * *
79516388 TATATATCTGATAAGGCCGACTGGCCAATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * * *
79516435 TACATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
79516483 ATGAATGTGA
Statistics
Matches: 225, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 83 0.37
48 4 0.02
49 134 0.60
50 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:79518774 original size:38 final size:38
Alignment explanation
Indices: 79518710--79518784 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
79518700 AATCCGAGTT
*
79518710 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
79518748 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
79518785 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:79518886 original size:40 final size:40
Alignment explanation
Indices: 79518842--79519197 Score: 500
Period size: 40 Copynumber: 8.9 Consensus size: 40
79518832 CTTGACGATG
*
79518842 ATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
79518882 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
79518922 ATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
79518962 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
79519002 ATCCAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
79519042 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
79519082 ATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* ** * *
79519122 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTG-TAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
79519161 GTCCGGGCTAGGTCCCGAAGAGCAATT-ATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGC-ATTCATGCTAGTGA
79519198 CGTGTATTCG
Statistics
Matches: 292, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 29 0.10
40 263 0.90
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:79522724 original size:49 final size:49
Alignment explanation
Indices: 79522671--79522910 Score: 355
Period size: 49 Copynumber: 5.0 Consensus size: 49
79522661 GTATGAGTTA
79522671 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
79522720 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
79522769 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
79522816 TATATATCTGATAAGGCCGAATGGCC-AGTGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTG
* * * * * * *
79522863 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
79522911 ATGAATGTGA
Statistics
Matches: 178, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 79 0.44
48 6 0.03
49 92 0.52
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:79522780 original size:98 final size:95
Alignment explanation
Indices: 79522671--79522910 Score: 349
Period size: 96 Copynumber: 2.5 Consensus size: 95
79522661 GTATGAGTTA
*
79522671 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTGTATATATCTGATAAGG
*
79522736 CCTAATGGCC-GATGTGATGAATGTGAAAGTGTG
65 CCGAATGGCCAG-TGTGATGAATGTGAAA--GTG
79522769 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAG-GTGTATATATCTGATAAGGC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTGTATATATCTGATAAGGC
79522833 CGAATGGCCAGTGTGATGAATGTGAAAGTG
66 CGAATGGCCAGTGTGATGAATGTGAAAGTG
* * * * * *
79522863 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAGTGT
79522911 ATGAATGTGA
Statistics
Matches: 131, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
94 37 0.28
95 4 0.03
96 45 0.34
97 4 0.03
98 41 0.31
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (95 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTGTATATATCTGATAAGGC
CGAATGGCCAGTGTGATGAATGTGAAAGTG
Found at i:79522839 original size:47 final size:47
Alignment explanation
Indices: 79522671--79522924 Score: 343
Period size: 47 Copynumber: 5.3 Consensus size: 47
79522661 GTATGAGTTA
79522671 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
79522720 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
79522769 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
* * *
79522816 TATATATCTGATAAGGCCGAATGGCC-AGTGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAGGTG
* * * * * *
79522863 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAGGTG
79522910 TATGA-ATGTGATAAG
1 TAT-ATATGTGATAAG
79522925 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 93 0.48
48 8 0.04
49 90 0.47
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
Found at i:79524802 original size:76 final size:75
Alignment explanation
Indices: 79524714--79525184 Score: 450
Period size: 76 Copynumber: 5.9 Consensus size: 75
79524704 TTTCTATTTC
* * *
79524714 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
79524779 TGTCTTTCAAA
66 TGT-TTTCAAA
79524790 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGT-ATTTTCAATTT
79524855 CTGTCTTTC-AA
65 CTGT-TTTCAAA
*
79524866 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-TGCTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTCAAT
*
79524930 TTCTGTTTTTCAATTTCTGTTCGT
63 TTCTG-TTTTCAA----------A
* * * * *
79524954 CAAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTTAAGACATGTTGAGGTAATTTT-AATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGT-ATTTTCAATTT
79525018 CTGTTCTTCAATTTA
65 CTGTT-TTCAA---A
* * * * *
79525033 TGTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGTCAAGCTGAGGTATTTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
*
79525098 AATTTCTATTTGTC---
60 AATTTCTGTTT-TCAAA
**
79525112 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A-AGACATGCTGAGGTATTTTCAATT
*
79525177 TCTATTTT
64 TCTGTTTT
79525185 TTCAATTTAT
Statistics
Matches: 335, Mismatches: 31, Indels: 60
0.79 0.07 0.14
Matches are distributed among these distances:
73 36 0.11
74 2 0.01
75 28 0.08
76 90 0.27
77 38 0.11
78 14 0.04
79 1 0.00
84 6 0.02
85 56 0.17
86 24 0.07
87 5 0.01
88 34 0.10
89 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TGTTTTCAAA
Found at i:79524941 original size:14 final size:14
Alignment explanation
Indices: 79524922--79524950 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79524912 TGCTGAGGTA
79524922 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
79524936 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
79524950 T
1 T
79524951 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:79525074 original size:85 final size:85
Alignment explanation
Indices: 79524866--79525341 Score: 412
Period size: 88 Copynumber: 5.6 Consensus size: 85
79524856 TGTCTTTCAA
*
79524866 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-T-ATCACATGCTGAGGTATTTTCAATT
* *
79524931 TCTGTTTTTCAATTTCTGTTCGTC
64 TCTGTTCTTCAATTTATGTT--TC
* * ** *
79524955 -AAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTTAAGACATGTTGAGGTAATTTT-AATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTATCACATGCTGAGGT-ATTTTCAATTT
79525018 CTGTTCTTCAATTTATGTTTC
65 CTGTTCTTCAATTTATGTTTC
* * *
79525039 AAAAATTAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGTCA-A-GCTGAGGTATTTTCAA--
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA--TCACATGCTGAGGTATTTTCAATT
79525100 --T-TTC-T--A-TT-TG--TC
64 TCTGTTCTTCAATTTATGTTTC
*
79525112 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TA-TCACATGCTGAGGTATTTTCAATT
* *
79525177 TCTATTTTTTCAATTTATGTTTTC
64 TCT-GTTCTTCAATTTATG-TTTC
* * * * *
79525201 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCAGAGCTATTATCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--ATCACATGCTGAGGTATTTTCAATT
* * * *
79525266 TCTATT-TTTATTGTCTAT-TTTT
64 TCTGTTCTTCAAT-T-TATGTTTC
** * **
79525288 AAAGTGTCAACTCATATTGCGAGAAGTGAGTTGAGCTCAGGATCACATGCTGAG
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC-C-TTATCACATGCTGAG
79525342 TAAAGAATAA
Statistics
Matches: 319, Mismatches: 39, Indels: 59
0.76 0.09 0.14
Matches are distributed among these distances:
73 40 0.13
74 2 0.01
75 18 0.06
76 2 0.01
77 1 0.00
79 2 0.01
80 3 0.01
81 3 0.01
82 1 0.00
84 8 0.03
85 44 0.14
86 36 0.11
87 17 0.05
88 76 0.24
89 66 0.21
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTATCACATGCTGAGGTATTTTCAATTTC
TGTTCTTCAATTTATGTTTC
Found at i:79525141 original size:73 final size:75
Alignment explanation
Indices: 79525037--79525183 Score: 237
Period size: 73 Copynumber: 2.0 Consensus size: 75
79525027 AATTTATGTT
* *
79525037 TCAAAAATTAACTCATATTGCGAGAGGTGAGTCGAGCCTC-AGGTCA-A-GCTGAGGTATTTTCA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCGA-CTCACATGCTGAGGTATTTTCA
79525099 ATTTCTATTTG
65 ATTTCTATTTG
*
79525110 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTATTTTCAA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCGACTCACATGCTGAGGTATTTTCAA
79525175 TTTCTATTT
66 TTTCTATTT
79525184 TTTCAATTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
73 41 0.60
74 2 0.03
75 25 0.37
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (75 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCGACTCACATGCTGAGGTATTTTCAA
TTTCTATTTG
Found at i:79525158 original size:246 final size:249
Alignment explanation
Indices: 79524790--79525238 Score: 721
Period size: 246 Copynumber: 1.8 Consensus size: 249
79524780 GTCTTTCAAA
* *
79524790 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGACAAGCTGAGGTAATTTTCAATTT
*
79524855 CTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGCTCACATGCTGAGG
66 CTATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGCTCACATGCTGAGG
* * *
79524920 TATTTTCAATTTCT-GTTTTTCAATTTCTGTTCGTC-AAAATCAGCTCATATTGTGAGAGGTGAG
130 TATTTTCAATTTCTAGTTTTTCAATTTATGTT-GTCAAAAATCAACTCATATTGCGAGAGGTGAG
79524983 TTGAGCCTTAAGACATGTTGAGGTAATTTTAATTTCTGTTCTTCAATTTATGTTTC
194 TTGAGCCTTAAGACATGTTGAGGTAATTTTAATTTCTGTTCTTCAATTTATGTTTC
* * *
79525039 AAAAATTAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGTCAAGCTGAGGT-ATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGACAAGCTGAGGTAATTTTCAATTT
79525103 CTAT-TTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACTCACATGCTGAG
66 CTATCTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTG-CTCACATGCTGAG
* *
79525165 GTATTTTCAATTTCTATTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
129 GTATTTTCAATTTCTAGTTTTTCAATTTATGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAG
79525230 TTGAGCCTT
194 TTGAGCCTT
79525239 GGCTCACGTG
Statistics
Matches: 185, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
245 1 0.01
246 68 0.37
247 52 0.28
248 16 0.09
249 48 0.26
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (249 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGACAAGCTGAGGTAATTTTCAATTT
CTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGCTCACATGCTGAGGT
ATTTTCAATTTCTAGTTTTTCAATTTATGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTTAAGACATGTTGAGGTAATTTTAATTTCTGTTCTTCAATTTATGTTTC
Found at i:79525264 original size:89 final size:87
Alignment explanation
Indices: 79525093--79525323 Score: 286
Period size: 89 Copynumber: 2.6 Consensus size: 87
79525083 AGCTGAGGTA
*
79525093 TTTTCAATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACA
1 TTTTCAA-TT-TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACA
* * *
79525158 TGCTGAGGTATTTTCAATTTCTATT
64 TGCAGAGCTATTATCAATTTCTA-T
* * *
79525183 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGT
1 TTTTCAATTTAT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACAT
79525248 GCAGAGCTATTATCAATTTCTAT
65 GCAGAGCTATTATCAATTTCTAT
* ** *
79525271 TTTT-ATTGTCTATTTTT-AAAGTGTCAACTCATATTGCGAGAAGTGAGTTGAGC
1 TTTTCAAT-T-TATTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
79525324 TCAGGATCAC
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
87 5 0.04
88 42 0.33
89 72 0.57
90 7 0.06
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (87 bp):
TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATG
CAGAGCTATTATCAATTTCTAT
Found at i:79526469 original size:27 final size:29
Alignment explanation
Indices: 79526425--79526487 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
79526415 ATTTTTCCTT
79526425 AAAAAAATCAGTTATATATAAAAGTATAA
1 AAAAAAATCAGTTATATATAAAAGTATAA
*
79526454 AAAAAAATCAGTTATATATAAAAGTATTA
1 AAAAAAATCAGTTATATATAAAAGTATAA
79526483 AAAAA
1 AAAAA
79526488 CAAAAATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.27
Consensus pattern (29 bp):
AAAAAAATCAGTTATATATAAAAGTATAA
Found at i:79527325 original size:4 final size:4
Alignment explanation
Indices: 79527318--79527342 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
79527308 ATATATAGTA
79527318 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
79527343 ATTATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:79527638 original size:37 final size:37
Alignment explanation
Indices: 79527551--79527657 Score: 128
Period size: 37 Copynumber: 2.9 Consensus size: 37
79527541 ATGTGTATAT
* * *
79527551 TCTTTTAATAGATATTATGTATATCTTTAT-ATATTA
1 TCTTTTAATATATATTATGTATATATTTTTAATATTA
*
79527587 T-TTTTAACTTTATATTATGTATATATTTTTAATATTA
1 TCTTTTAA-TATATATTATGTATATATTTTTAATATTA
* * *
79527624 TCTTTTTATATATATTATGTACATATTTTCAATA
1 TCTTTTAATATATATTATGTATATATTTTTAATA
79527658 CTATTAATTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
35 6 0.10
36 19 0.32
37 30 0.50
38 5 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.58
Consensus pattern (37 bp):
TCTTTTAATATATATTATGTATATATTTTTAATATTA
Found at i:79527786 original size:2 final size:2
Alignment explanation
Indices: 79527779--79527807 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
79527769 ATTATATGTT
79527779 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79527808 TCATGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79527849 original size:21 final size:20
Alignment explanation
Indices: 79527816--79527854 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79527806 ATTCATGATT
*
79527816 TTATTTCGTGTTTAATACTA
1 TTATTTCATGTTTAATACTA
79527836 TTATTATCATGTTTAATAC
1 TTATT-TCATGTTTAATAC
79527855 CATATGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (20 bp):
TTATTTCATGTTTAATACTA
Found at i:79534975 original size:62 final size:62
Alignment explanation
Indices: 79534689--79534975 Score: 326
Period size: 62 Copynumber: 4.6 Consensus size: 62
79534679 ATATCCTGCC
* * *
79534689 ACACGGCCTGGGCACACACCCGTGTGCCTTGGCCGTATGGTTTTTAAGCACAAACAGTGAGTT
1 ACACGGCCTGGGCACACGCCCGTGT-CCCTGGCCGTGTGGTTTTTAAGCACAAACAGTGAGTT
* * *
79534752 ACACGGCCTGGGCACACGCCTGTGTCCCTGGCCATGTAGTTTTTAAGCACAAACAGTGAGTT
1 ACACGGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTTTTAAGCACAAACAGTGAGTT
* * * * * * *
79534814 ACACAGCCCGAGCACACGTCCGTGTCCCTAGCCATGTAGTTTTTAAGCACAAACAGTGAGTT
1 ACACGGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTTTTAAGCACAAACAGTGAGTT
* * * * * ** * *
79534876 ACACAGCCTGAGCACGCGCCCATGCCCCTGGTTGTGTGG-TTTTATA-CCCTAAATAGTGAGTT
1 ACACGGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTTTTA-AGCAC-AAACAGTGAGTT
*
79534938 ACACGGACTGGGCACACGCCCGTGTCCCTGGCCGTGTG
1 ACACGGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTG
79534976 AACCCTGCAC
Statistics
Matches: 190, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
61 7 0.04
62 160 0.84
63 23 0.12
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (62 bp):
ACACGGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTTTTAAGCACAAACAGTGAGTT
Found at i:79536110 original size:17 final size:18
Alignment explanation
Indices: 79536078--79536112 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79536068 CTTAGCACAA
79536078 ATTTGATTAAAATAAAAT
1 ATTTGATTAAAATAAAAT
*
79536096 ATTTGATT-CAATAAAAT
1 ATTTGATTAAAATAAAAT
79536113 TCGAAGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (18 bp):
ATTTGATTAAAATAAAAT
Found at i:79538892 original size:17 final size:17
Alignment explanation
Indices: 79538870--79538910 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
79538860 TTAGCATAAT
*
79538870 AGTTTATGATAAAAGTA
1 AGTTTATGATAAAAATA
79538887 AGTTTATGATAAAAATA
1 AGTTTATGATAAAAATA
79538904 AGTTTAT
1 AGTTTAT
79538911 ATCCATTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (17 bp):
AGTTTATGATAAAAATA
Found at i:79539691 original size:16 final size:16
Alignment explanation
Indices: 79539666--79539700 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
79539656 ATTTATTTTA
79539666 TAAATAAATAA-AAAT
1 TAAATAAATAATAAAT
79539681 TAAAGTAAATAATAAAT
1 TAAA-TAAATAATAAAT
79539698 TAA
1 TAA
79539701 TTTTAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 7 0.39
17 7 0.39
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAATAAATAATAAAT
Found at i:79539998 original size:26 final size:24
Alignment explanation
Indices: 79539937--79539998 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 24
79539927 TATAAATATA
*
79539937 ATTTAT-TATTAAAATAAAAAATT
1 ATTTATATCTTAAAATAAAAAATT
*
79539960 ATTTATATCTTAAAATTAAGAAATTT
1 ATTTATATCTTAAAA-TAA-AAAATT
79539986 ATCTTATAT-TTAA
1 AT-TTATATCTTAA
79539999 TTTATTTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 6 0.18
24 7 0.21
25 3 0.09
26 11 0.33
27 6 0.18
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTTATATCTTAAAATAAAAAATT
Found at i:79546956 original size:1 final size:1
Alignment explanation
Indices: 79546950--79546995 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
79546940 TTAGTACTTA
* * * *
79546950 TTTTTTTCTTCTTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
79546996 AAATTTTATT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:79546976 original size:21 final size:19
Alignment explanation
Indices: 79546950--79546995 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 19
79546940 TTAGTACTTA
79546950 TTTTTTTCTTCTTTTTTTTT
1 TTTTTTTCTT-TTTTTTTTT
79546970 CTTTTTTTCTTTTTTTTTTT
1 -TTTTTTTCTTTTTTTTTTT
79546990 TTTTTT
1 TTTTTT
79546996 AAATTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 6 0.24
20 9 0.36
21 10 0.40
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTTTTT
Found at i:79546995 original size:18 final size:18
Alignment explanation
Indices: 79546950--79546995 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
79546940 TTAGTACTTA
*
79546950 TTTTTTTCTTCTTTTTTT
1 TTTTTTTTTTCTTTTTTT
*
79546968 TTCTTTTTTTCTTTTTTT
1 TTTTTTTTTTCTTTTTTT
79546986 TTTTTTTTTT
1 TTTTTTTTTT
79546996 AAATTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (18 bp):
TTTTTTTTTTCTTTTTTT
Found at i:79547280 original size:116 final size:117
Alignment explanation
Indices: 79547121--79547349 Score: 370
Period size: 116 Copynumber: 2.0 Consensus size: 117
79547111 TATTTCCGGT
79547121 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGA-GCGAAGTAGAATGACAACCCAAGCAC
* *
79547186 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
65 CCTACCCCGGTTACTCAGTCAGTCACGATATAAGCCATACTCATAACCTCGGC
****
79547239 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTG-GCGAAGTAGAATGACAACCCAAGCACC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGAGCGAAGTAGAATGACAACCCAAGCACC
**
79547303 CTACCCCGGTTACTCAGTCAGTCACGATATAAGCTGTACTCATAACC
66 CTACCCCGGTTACTCAGTCAGTCACGATATAAGCCATACTCATAACC
79547350 ATGGAAAACA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
116 70 0.68
118 33 0.32
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (117 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGAGCGAAGTAGAATGACAACCCAAGCACC
CTACCCCGGTTACTCAGTCAGTCACGATATAAGCCATACTCATAACCTCGGC
Found at i:79548323 original size:6 final size:6
Alignment explanation
Indices: 79548307--79548381 Score: 70
Period size: 6 Copynumber: 12.7 Consensus size: 6
79548297 ATATTTAACT
*
79548307 AAAAT- AAAATA AAAATA AAAA-A AATAATA AATAATA AAAGA-G AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AA-AATA AAA-ATA AAAATA
79548354 -AAATA AAAATA AAAATAA AAAATA AAAA
1 AAAATA AAAATA AAAAT-A AAAATA AAAA
79548382 GAAAGATTGG
Statistics
Matches: 61, Mismatches: 1, Indels: 15
0.79 0.01 0.19
Matches are distributed among these distances:
4 4 0.07
5 9 0.15
6 31 0.51
7 17 0.28
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:79548345 original size:35 final size:35
Alignment explanation
Indices: 79548317--79548385 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
79548307 AAAATAAAAT
*
79548317 AAAAATAAAAA-AAATAATAAATAATAAAAGAGAAA
1 AAAAATAAAAATAAA-AATAAAAAATAAAAGAGAAA
*
79548352 ATAAATAAAAATAAAAATAAAAAATAAAA-AGAAA
1 AAAAATAAAAATAAAAATAAAAAATAAAAGAGAAA
79548386 GATTGGGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 5 0.16
35 23 0.74
36 3 0.10
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.14
Consensus pattern (35 bp):
AAAAATAAAAATAAAAATAAAAAATAAAAGAGAAA
Found at i:79548352 original size:22 final size:20
Alignment explanation
Indices: 79548314--79548381 Score: 79
Period size: 22 Copynumber: 3.4 Consensus size: 20
79548304 ACTAAAATAA
79548314 AATAAAAAT-AAAA-AAAAT
1 AATAAAAATAAAAAGAAAAT
79548332 AATAAATAATAAAAGAGAAAAT
1 AATAAA-AATAAAA-AGAAAAT
*
79548354 AAATAAAAATAAAAATAAAA-
1 -AATAAAAATAAAAAGAAAAT
79548374 AATAAAAA
1 AATAAAAA
79548382 GAAAGATTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
18 6 0.14
19 11 0.25
20 3 0.07
21 6 0.14
22 12 0.27
23 6 0.14
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (20 bp):
AATAAAAATAAAAAGAAAAT
Found at i:79548379 original size:7 final size:7
Alignment explanation
Indices: 79548312--79548381 Score: 59
Period size: 7 Copynumber: 9.4 Consensus size: 7
79548302 TAACTAAAAT
79548312 AAAATAA
1 AAAATAA
*
79548319 AAATAAAA
1 AAA-ATAA
79548327 AAAATAA
1 AAAATAA
*
79548334 TAAATAA
1 AAAATAA
* *
79548341 TAAAAGAG
1 -AAAATAA
79548349 AAAATAA
1 AAAATAA
*
79548356 ATAAAAATA
1 A-AAATA-A
79548365 AAAATAA
1 AAAATAA
79548372 AAAATAA
1 AAAATAA
79548379 AAA
1 AAA
79548382 GAAAGATTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
7 29 0.59
8 18 0.37
9 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:79555182 original size:28 final size:28
Alignment explanation
Indices: 79555151--79555208 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
79555141 AGATGGATAG
79555151 CTCCAACTAGTTTAACACTTAAAATCAA
1 CTCCAACTAGTTTAACACTTAAAATCAA
*
79555179 CTCCAACTAGTTTAACAGTTAAAATCAA
1 CTCCAACTAGTTTAACACTTAAAATCAA
79555207 CT
1 CT
79555209 TTGACGCTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.29
Consensus pattern (28 bp):
CTCCAACTAGTTTAACACTTAAAATCAA
Found at i:79556227 original size:15 final size:16
Alignment explanation
Indices: 79556204--79556236 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
79556194 ATTTTAGTAC
79556204 TTTTAATAATA-TATT
1 TTTTAATAATATTATT
*
79556219 TTTTGATAATATTATT
1 TTTTAATAATATTATT
79556235 TT
1 TT
79556237 AAATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTTAATAATATTATT
Found at i:79556284 original size:21 final size:21
Alignment explanation
Indices: 79556228--79556284 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
79556218 TTTTTGATAA
*
79556228 TATTA-TTTTA-AATTAATAT
1 TATTACTTTTATATTTAATAT
* * *
79556247 TAATACTTTTTTGTTTAATAT
1 TATTACTTTTATATTTAATAT
79556268 TATTACTTTTATATTTA
1 TATTACTTTTATATTTA
79556285 TTCATTTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 4 0.14
20 4 0.14
21 21 0.72
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTACTTTTATATTTAATAT
Found at i:79557020 original size:67 final size:70
Alignment explanation
Indices: 79556944--79557076 Score: 168
Period size: 70 Copynumber: 1.9 Consensus size: 70
79556934 ATAAACAATA
**
79556944 TAATGGTTTT-ACCTTTTAAC-TTA-ATGAG-TAAACATTTATCAAAA-CAACGTAGTTTTGCCT
1 TAATGGTTTTGA-CTTTTAACTTTAGAAAAGATAAACATTTATCAAAATCAA-GTAGTTTTGCCT
79557004 TTTAACT
64 TTTAACT
* **
79557011 TAATGGTTTTGACTTTTAACTTTAGAAAAGATAAACATTTATTAAAATGGAGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAACTTTAGAAAAGATAAACATTTATCAAAATCAAGTAGTTTTGCCTTT
79557076 T
66 T
79557077 CTTATTTGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
67 18 0.32
68 4 0.07
69 3 0.05
70 30 0.54
71 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (70 bp):
TAATGGTTTTGACTTTTAACTTTAGAAAAGATAAACATTTATCAAAATCAAGTAGTTTTGCCTTT
TAACT
Found at i:79565172 original size:40 final size:40
Alignment explanation
Indices: 79565127--79565313 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
79565117 ATAACCACAA
* *
79565127 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
79565167 GCACAAATGCCTTC-GGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
79565206 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
79565246 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * * *
79565286 GTATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
79565314 GTATCATTCA
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 36 0.27
40 95 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:79565200 original size:79 final size:80
Alignment explanation
Indices: 79565107--79565317 Score: 309
Period size: 79 Copynumber: 2.7 Consensus size: 80
79565097 TCTTCGGAAT
* *
79565107 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
79565171 AAATGCCTTC-GGTC
66 AAATGCCTTCGGGTC
* * *
79565185 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
79565250 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * * *
79565265 TTAACCCGGATATAATCACTAGTATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
79565318 CATTCAGTTG
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
78 4 0.03
79 65 0.56
80 48 0.41
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:79570699 original size:40 final size:39
Alignment explanation
Indices: 79570655--79570783 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
79570645 GACTCGCTCA
*
79570655 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
79570694 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
79570734 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
79570772 GAATGCCTTCGG
1 -AATGCCTTCGG
79570784 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:79570783 original size:78 final size:80
Alignment explanation
Indices: 79570690--79570836 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
79570680 ATAGCGACTT
* * *
79570690 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
79570752 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
79570768 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
79570833 CGGA
66 CGGA
79570837 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:79570820 original size:40 final size:37
Alignment explanation
Indices: 79570671--79570836 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
79570661 TTCGGGACGA
* ** *
79570671 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
79570711 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
79570749 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
79570789 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
79570829 AGCCCGGA
1 AGCCCGGA
79570837 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:79574549 original size:39 final size:40
Alignment explanation
Indices: 79574494--79574664 Score: 215
Period size: 39 Copynumber: 4.3 Consensus size: 40
79574484 GGACTAAGAT
* *
79574494 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
79574533 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* * *
79574572 CCGAAGGCATTTGTGCGAGTTAATAAACCCGAGTTGAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
* * * *
79574612 CCGAAGGCATTCGTCCGAGTTACTATAA-CCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAGTC
79574652 CCGAAGGCATTTG
1 CCGAAGGCATTTG
79574665 AGCTAGTCGT
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 72 0.61
40 40 0.34
41 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTC
Found at i:79589005 original size:18 final size:19
Alignment explanation
Indices: 79588982--79589021 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
79588972 GTGGCAAAAG
*
79588982 AATGGGAAATGGAAT-TGA
1 AATGGGAAATGAAATGTGA
79589000 AATGGGAAATGAAATGTGA
1 AATGGGAAATGAAATGTGA
79589019 AAT
1 AAT
79589022 TATGGAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (19 bp):
AATGGGAAATGAAATGTGA
Found at i:79596544 original size:29 final size:29
Alignment explanation
Indices: 79596511--79596642 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
79596501 GTGACGAGAT
79596511 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79596540 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
79596569 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
79596598 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
79596627 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79596643 AAATCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
28 2 0.02
29 88 0.98
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79604489 original size:29 final size:29
Alignment explanation
Indices: 79604456--79604587 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
79604446 GTGACGAGAT
79604456 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79604485 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
79604514 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
79604543 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
79604572 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79604588 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79610571 original size:40 final size:40
Alignment explanation
Indices: 79610475--79610665 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
79610465 CGAATGGTGT
* * * * * *
79610475 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
79610516 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
79610556 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
79610596 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
79610636 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
79610666 ATCACTATAA
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 109 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:79610626 original size:80 final size:80
Alignment explanation
Indices: 79610475--79610707 Score: 261
Period size: 80 Copynumber: 2.9 Consensus size: 80
79610465 CGAATGGTGT
* * * * * *
79610475 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
79610540 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* * *
79610556 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
* *
79610621 TGCGAGTTACTAAAT
66 TGCGAGTTACCAAAA
* * * * * * * *
79610636 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAGGCATTC
*
79610700 GAGCGAGT
65 GTGCGAGT
79610708 CGCTATATCC
Statistics
Matches: 129, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 2 0.02
80 101 0.78
81 26 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Done.