Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 259 of 425
Found at i:79610680 original size:40 final size:39
Alignment explanation
Indices: 79610475--79610707 Score: 211
Period size: 40 Copynumber: 5.8 Consensus size: 39
79610465 CGAATGGTGT
** * *
79610475 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
79610515 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
79610556 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
79610596 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
79610635 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
79610676 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
79610708 CGCTATATCC
Statistics
Matches: 167, Mismatches: 17, Indels: 17
0.83 0.08 0.08
Matches are distributed among these distances:
39 8 0.05
40 125 0.75
41 34 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:79610689 original size:120 final size:121
Alignment explanation
Indices: 79610475--79610693 Score: 300
Period size: 120 Copynumber: 1.8 Consensus size: 121
79610465 CGAATGGTGT
* * *
79610475 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
79610540 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
79610596 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
79610659 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
79610694 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.04
120 57 0.67
121 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:79618676 original size:39 final size:40
Alignment explanation
Indices: 79618581--79618769 Score: 229
Period size: 40 Copynumber: 4.8 Consensus size: 40
79618571 CGAATGGTGT
* * * * * *
79618581 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
79618622 CCGGGTCAA-TTCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
79618661 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
79618700 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
79618740 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
79618770 ATCACTATAA
Statistics
Matches: 130, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 55 0.42
40 68 0.52
41 7 0.05
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:79618716 original size:79 final size:79
Alignment explanation
Indices: 79618581--79618769 Score: 236
Period size: 79 Copynumber: 2.4 Consensus size: 79
79618571 CGAATGGTGT
* * * * * *
79618581 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAATCCCGAAGGCATTCG
79618646 TGCGAGTTACCAAAA
65 TGCGAGTTACCAAAA
* * *
79618661 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-TCCCGAAGGCATTCG
* *
79618725 TGCGAGTTACTAAAT
65 TGCGAGTTACCAAAA
* *
79618740 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
79618770 ATCACTATAA
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
78 16 0.17
79 50 0.54
80 27 0.29
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAATCCCGAAGGCATTCGT
GCGAGTTACCAAAA
Found at i:79618784 original size:40 final size:39
Alignment explanation
Indices: 79618581--79618802 Score: 193
Period size: 40 Copynumber: 5.6 Consensus size: 39
79618571 CGAATGGTGT
** * *
79618581 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
79618621 TCCGGG-TCAA-TTCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
79618661 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
79618700 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
79618739 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
*
79618780 CCGGGC-AATGTCCCGAAGACAAT
1 CCGGGCTAA-GTCCCGAAGGCAAT
79618803 CGAGTGAGTC
Statistics
Matches: 158, Mismatches: 13, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
39 58 0.37
40 88 0.56
41 12 0.08
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:79624135 original size:30 final size:31
Alignment explanation
Indices: 79624111--79624169 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
79624101 GTAAATACTC
* **
79624111 AAAATTTGAGGGGTTAA-AGTGTAAATATAA
1 AAAATTTGAAGGGCCAATAGTGTAAATATAA
79624141 AAAATTTGAAGGGCCAATAGTGTAAATAT
1 AAAATTTGAAGGGCCAATAGTGTAAATAT
79624170 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.46, C:0.03, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGGCCAATAGTGTAAATATAA
Found at i:79626302 original size:46 final size:46
Alignment explanation
Indices: 79626235--79626508 Score: 370
Period size: 46 Copynumber: 6.0 Consensus size: 46
79626225 GCTCTCTGAA
* * *
79626235 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
79626281 ATGAAAGGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
79626327 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACTTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
79626373 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
79626419 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
79626465 A-GAAATTGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
79626509 TCAAAGATAA
Statistics
Matches: 209, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 205 0.98
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79631241 original size:16 final size:17
Alignment explanation
Indices: 79631204--79631249 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
79631194 GTGAGCAAAG
79631204 AGGAAGAAATGGAAAGGAA
1 AGGAAGAAA--GAAAGGAA
79631223 AGGAAGAAAGAAA-GAA
1 AGGAAGAAAGAAAGGAA
79631239 AGGAAGGAAAG
1 AGGAA-GAAAG
79631250 GAGAGTGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
19 9 0.35
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (17 bp):
AGGAAGAAAGAAAGGAA
Found at i:79631250 original size:9 final size:8
Alignment explanation
Indices: 79631204--79631251 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
79631194 GTGAGCAAAG
79631204 AGGAAGAA
1 AGGAAGAA
79631212 ATGGAAAGGAA
1 A-GG-AA-GAA
79631223 AGGAAGAA
1 AGGAAGAA
*
79631231 AGAAAGAA
1 AGGAAGAA
79631239 AGGAAGGAA
1 AGGAA-GAA
79631248 AGGA
1 AGGA
79631252 GAGTGGGGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 15 0.44
9 11 0.32
10 4 0.12
11 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (8 bp):
AGGAAGAA
Found at i:79634416 original size:30 final size:30
Alignment explanation
Indices: 79634382--79634442 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79634372 TCCTTAACTC
79634382 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79634412 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79634442 A
1 A
79634443 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79636792 original size:50 final size:49
Alignment explanation
Indices: 79636619--79636848 Score: 271
Period size: 49 Copynumber: 4.6 Consensus size: 49
79636609 TATAGTGAGG
* *
79636619 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGA
** * * * * *
79636668 TTGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GA
* * **
79636719 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GA
* * *
79636769 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGA
* *
79636818 TCACATATGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
79636849 TGCGTACCAG
Statistics
Matches: 149, Mismatches: 30, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
49 66 0.44
50 47 0.32
51 36 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGA
Found at i:79647527 original size:29 final size:29
Alignment explanation
Indices: 79647489--79647556 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
79647479 CACACGGTTA
* *
79647489 GGCACACGGGCGTGTATGGCCATTTTTAG
1 GGCACACGGGAGTGTAAGGCCATTTTTAG
79647518 GGCACACGGGAGTGTAAGGCCATTTTTAG
1 GGCACACGGGAGTGTAAGGCCATTTTTAG
79647547 GGCACACGGG
1 GGCACACGGG
79647557 TTAGCCATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.22
Consensus pattern (29 bp):
GGCACACGGGAGTGTAAGGCCATTTTTAG
Found at i:79654879 original size:40 final size:40
Alignment explanation
Indices: 79654795--79654881 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
79654785 CTCGGTATCG
* * **
79654795 CACACTTAGTGTCTCATATAGCCGAAGCTATTCCAATTTG
1 CACACTTAGTGTCTCATATAACCGAAGCTATTCCAAATCA
*
79654835 CACACTTAGTG-CT-ATTTATAACCGAAGCTATTTCAAATCA
1 CACACTTAGTGTCTCA--TATAACCGAAGCTATTCCAAATCA
79654875 CACACTT
1 CACACTT
79654882 TGTACTGAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.03
39 2 0.05
40 37 0.93
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.32
Consensus pattern (40 bp):
CACACTTAGTGTCTCATATAACCGAAGCTATTCCAAATCA
Found at i:79656259 original size:50 final size:51
Alignment explanation
Indices: 79656198--79656329 Score: 169
Period size: 50 Copynumber: 2.6 Consensus size: 51
79656188 AAGCTATCTG
* *
79656198 GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATC-GA
* * **
79656249 -TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCGA
* *
79656299 GTACGCATAGGAGCCTGCACTTAGTACTACA
1 GTACACATAGTAGCCTGCACTTAGTACTACA
79656330 TATGCGACCT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 40 0.57
51 30 0.43
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (51 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCGA
Found at i:79664656 original size:40 final size:39
Alignment explanation
Indices: 79664491--79664674 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79664481 AAATTGAATG
* * *
79664491 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79664531 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79664571 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79664611 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79664650 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79664675 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79664699 original size:80 final size:81
Alignment explanation
Indices: 79664531--79664719 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79664521 GCTGGAAATT
* * * *
79664531 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79664596 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79664612 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79664675 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79664691 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79664720 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79683121 original size:40 final size:40
Alignment explanation
Indices: 79682973--79683157 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
79682963 TTCGAATGAT
* * * *
79682973 ATCCGGGCTAAGTCCC-AAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
79683013 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACT-A
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
**
79683052 ATCCGGGCTAAG-CCCGAAGGCATGGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79683091 ATCCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTGCTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
79683132 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
79683158 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 21 0.17
39 22 0.18
40 65 0.53
41 15 0.12
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79683170 original size:40 final size:40
Alignment explanation
Indices: 79683093--79683176 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
79683083 GTTACTAAAT
* ** *
79683093 CCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
* *
79683133 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
79683173 CCGG
1 CCGG
79683177 TTAAACTCCG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:79691174 original size:40 final size:39
Alignment explanation
Indices: 79691011--79691194 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
79691001 CGAATGATAT
* * * *
79691011 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
79691052 CCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACTAATC
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
**
79691092 CCGGGCTAAG-CCCGAAGGCATGGGT-CGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79691129 TCCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79691170 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79691195 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 19 0.16
39 25 0.21
40 48 0.40
41 26 0.22
42 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79692687 original size:34 final size:34
Alignment explanation
Indices: 79692631--79692893 Score: 203
Period size: 34 Copynumber: 7.8 Consensus size: 34
79692621 CACCCCTACC
*
79692631 ACTGTATTGA-TATGTTATAAGCATGCTAATTGCT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
* * * *
79692665 ATTGTATTGACTTGTCACAAGCATGTTTATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* * * *
79692699 ACTGTATTGATTTATGATAAGCATGATAATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* *
79692733 ACCGTATTGA-TCAGTTATAAGCATGTTAATTGCT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
** ***
79692767 ACTGTATCAACTTGTTATAAGCATGTTTGCTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
** * * * *
79692801 ACCATATTG-GTCTATTATAAGCATGATAATTGAT
1 ACTGTATTGACT-TGTTATAAGCATGTTAATTGCT
* * **
79692835 GCTGTATCGACTTACTATAAGCATGTT-ATTGCT
1 ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
* *
79692868 A-TCGTATTGATTTGTTATAAACATGT
1 ACT-GTATTGACTTGTTATAAGCATGT
79692894 CATGTTACAT
Statistics
Matches: 174, Mismatches: 49, Indels: 13
0.74 0.21 0.06
Matches are distributed among these distances:
32 1 0.01
33 25 0.14
34 145 0.83
35 3 0.02
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (34 bp):
ACTGTATTGACTTGTTATAAGCATGTTAATTGCT
Found at i:79692787 original size:68 final size:68
Alignment explanation
Indices: 79692645--79692893 Score: 229
Period size: 68 Copynumber: 3.7 Consensus size: 68
79692635 TATTGATATG
** * * * * *
79692645 TTATAAGCATGCTAATTGCTATTGTATTGA-CTTGTCACAAGCATGTTTATTGCTACTGTATTGA
1 TTATAAGCATG-TAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGA
*
79692709 TTTA
65 CTTA
* *
79692713 TGATAAGCATGATAATTGCTACCGTATTGATC-AGTTATAAGCATGTTAATTGCTACTGTATCAA
1 TTATAAGCATG-TAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGA
*
79692777 CTTG
65 CTTA
* * * * * *
79692781 TTATAAGCATGT-TTGCTGCTACCATATTGGTCTA-TTATAAGCATGATAATTGATGCTGTATCG
1 TTATAAGCATGTAAT--TGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCG
79692844 ACTTA
64 ACTTA
* * * * *
79692849 CTATAAGCATGTTATTGCTATCGTATTGAT-TTGTTATAAACATGT
1 TTATAAGCATGTAATTGCTACCGTATTGATCTAGTTATAAGCATGT
79692894 CATGTTACAT
Statistics
Matches: 146, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
66 2 0.01
67 23 0.16
68 118 0.81
69 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (68 bp):
TTATAAGCATGTAATTGCTACCGTATTGATCTAGTTATAAGCATGTTAATTGCTACTGTATCGAC
TTA
Found at i:79692821 original size:102 final size:102
Alignment explanation
Indices: 79692634--79692832 Score: 265
Period size: 102 Copynumber: 2.0 Consensus size: 102
79692624 CCCTACCACT
* ** *
79692634 GTATTGATATGTTATAAGCATGCTAATTGCTATTGTATTGACTTGTCACAAGCATGTTTATTGCT
1 GTATTGATATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCT
** *
79692699 ACTGTATTGATTTATGATAAGCATGATAATTGCTACC
66 ACCATATTGATCTATGATAAGCATGATAATTGCTACC
* * * *
79692736 GTATTGATCA-GTTATAAGCATGTTAATTGCTACTGTATCAACTTGTTATAAGCATGTTTGCTGC
1 GTATTGAT-ATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGC
* *
79692800 TACCATATTGGTCTATTATAAGCATGATAATTG
65 TACCATATTGATCTATGATAAGCATGATAATTG
79692833 ATGCTGTATC
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
102 82 0.99
103 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.41
Consensus pattern (102 bp):
GTATTGATATGTTATAAGCATGCTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCT
ACCATATTGATCTATGATAAGCATGATAATTGCTACC
Found at i:79692854 original size:102 final size:102
Alignment explanation
Indices: 79692646--79692868 Score: 252
Period size: 102 Copynumber: 2.2 Consensus size: 102
79692636 ATTGATATGT
* * ** * ** *
79692646 TATAAGCATGCTAATTGCTATTGTATTGACTTGTCACAAGCATGTTTATTGCTACTGTATTGATT
1 TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
* * *
79692711 TATGATAAGCATGATAATTGCTACCGTATTGATCAGT
66 TATGATAAGCATGATAATTGATACCGTATCGATCAGC
* * * *
79692748 TATAAGCATGTTAATTGCTACTGTATCAACTTGTTATAAGCATGTTTGCTGCTACCATATTGGTC
1 TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
* * * *
79692813 TATTATAAGCATGATAATTGATGCTGTATCGACTTA-C
66 TATGATAAGCATGATAATTGATACCGTATCGA-TCAGC
79692850 TATAAGCATGTT-ATTGCTA
1 TATAAGCATGTTAATTGCTA
79692869 TCGTATTGAT
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
101 7 0.07
102 92 0.91
103 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (102 bp):
TATAAGCATGTTAATTGCTACTGTATCAACTTGTCACAAGCATGTTTACTGCTACCATATTGATC
TATGATAAGCATGATAATTGATACCGTATCGATCAGC
Found at i:79693033 original size:48 final size:48
Alignment explanation
Indices: 79692936--79693249 Score: 218
Period size: 48 Copynumber: 6.7 Consensus size: 48
79692926 ACGGAGGAAG
** * * * * *
79692936 TAGTCAGCAGTTTGTCTGCACGACTAGTGATTCATCCACAACGTATTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
** *
79692984 TAGTTGGCAGTTTAACTGCATGACCAGTGGTTCAGT-CATAACATCTTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCA-TCCATAACATCTTT
* *
79693032 TAGTCAGCAGTTTATCTGCACGACCAGTGGTTCATCCATAAC-T-TAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* ** * * *
79693078 TAG-CAGC-TTTTATTTGCACGACAAGTGGTTTATCCATAACA--TAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * * * * * * * *
79693122 TAAT-AGC-TTTTATCTACATGACAAATGGTTCATCCACAACATATTT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * * * *
79693168 TAGTCAGCAATTTATA-TGCACGACAAGTGGTTTATCCATAACGT-ATT
1 TAGTCAGCAGTTTA-ACTGCACGACCAGTGGTTCATCCATAACATCTTT
* * *
79693215 TAGTCGGCAGTTTATCTGCACGACTAGTGGTTCAT
1 TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCAT
79693250 TCGCAACGTA
Statistics
Matches: 214, Mismatches: 42, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
44 65 0.30
45 4 0.02
46 10 0.05
47 36 0.17
48 98 0.46
49 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (48 bp):
TAGTCAGCAGTTTAACTGCACGACCAGTGGTTCATCCATAACATCTTT
Found at i:79693105 original size:44 final size:44
Alignment explanation
Indices: 79693042--79693279 Score: 215
Period size: 44 Copynumber: 5.2 Consensus size: 44
79693032 TAGTCAGCAG
* *
79693042 TTTATCTGCACGACCAGTGGTTCATCCATAACTTATTAGCAGCT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
* * * **
79693086 TTTATTTGCACGACAAGTGGTTTATCCATAACATATTAATAGCT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
* * * * * *
79693130 TTTATCTACATGACAAATGGTTCATCCACAACATATTTTAGTCAGCAA
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTA--TTAG-CAGC-T
* * * *
79693178 TTTATATGCACGACAAGTGGTTTATCCATAACGTATTTAGTCGGCAG
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTA-TTAG-CAGC-T
* * ** *
79693225 TTTATCTGCACGACTAGTGGTTCATTCGCAACGTATTAGCAACT
1 TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
79693269 TTTATCTGCAC
1 TTTATCTGCAC
79693280 TAATAGATGG
Statistics
Matches: 157, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
44 78 0.50
45 2 0.01
46 7 0.04
47 42 0.27
48 28 0.18
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (44 bp):
TTTATCTGCACGACAAGTGGTTCATCCATAACGTATTAGCAGCT
Found at i:79701011 original size:23 final size:23
Alignment explanation
Indices: 79700985--79701031 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
79700975 AACATTATTA
79700985 AATTACAATTAACCTAAACTAAT
1 AATTACAATTAACCTAAACTAAT
79701008 AATTACAATTAACCTAAACTAAT
1 AATTACAATTAACCTAAACTAAT
79701031 A
1 A
79701032 GACATTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTACAATTAACCTAAACTAAT
Found at i:79703783 original size:40 final size:40
Alignment explanation
Indices: 79703721--79703851 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 40
79703711 TCTTCGGACA
* * *
79703721 TAGCCCGG-TTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAAT
79703761 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * * *
79703801 T-GACTCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
79703842 TAGCCCGGAT
1 TAGCCCGGAT
79703852 ACCATTCGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 48 0.62
41 28 0.36
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:79704695 original size:78 final size:80
Alignment explanation
Indices: 79704594--79704743 Score: 250
Period size: 78 Copynumber: 1.9 Consensus size: 80
79704584 CCAGCATGAT
*
79704594 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GAACTTAG-CCGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
79704657 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
79704672 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
*
79704737 TATCACT
66 CATCACT
79704744 CTCAATTCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
78 45 0.68
79 8 0.12
80 13 0.20
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:79704705 original size:40 final size:40
Alignment explanation
Indices: 79704594--79704743 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
79704584 CCAGCATGAT
* * *
79704594 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79704634 TGCTCTTC-GAACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79704672 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79704712 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79704744 CTCAATTCTC
Statistics
Matches: 105, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
38 30 0.29
39 14 0.13
40 61 0.58
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79706621 original size:37 final size:37
Alignment explanation
Indices: 79706571--79706643 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
79706561 TACGAAGTCT
79706571 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
*
79706608 TACCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79706644 TCACCGGAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:79706794 original size:49 final size:49
Alignment explanation
Indices: 79706726--79706997 Score: 483
Period size: 49 Copynumber: 5.6 Consensus size: 49
79706716 TTTACCACAT
*
79706726 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79706775 ATATATATAC-GTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAG-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79706824 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79706873 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79706922 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79706971 ATATATATACAGTTTCACATTCATCAC
1 ATATATATACAGTTTCACATTCATCAC
79706998 TGTTAGAATT
Statistics
Matches: 214, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
49 213 1.00
50 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (49 bp):
ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79716797 original size:18 final size:20
Alignment explanation
Indices: 79716751--79716797 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 20
79716741 CACGGCCAAG
*
79716751 GCCA-ATTTGGGCTGTGTGG
1 GCCACATTTGGGCTGTGTGA
79716770 GCCACA--TGGGC-GTGTGA
1 GCCACATTTGGGCTGTGTGA
79716787 GCC-CATTTGGG
1 GCCACATTTGGG
79716798 TGAAATAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
16 2 0.08
17 8 0.33
18 9 0.38
19 4 0.17
20 1 0.04
ACGTcount: A:0.13, C:0.21, G:0.40, T:0.26
Consensus pattern (20 bp):
GCCACATTTGGGCTGTGTGA
Found at i:79720342 original size:40 final size:40
Alignment explanation
Indices: 79720297--79720464 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
79720287 CGGAATATAA
79720297 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79720337 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
79720377 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
79720417 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
79720457 CCGGATAT
1 CCGGATAT
79720465 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79728352 original size:40 final size:40
Alignment explanation
Indices: 79728307--79728474 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
79728297 CGGAATATAA
79728307 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79728347 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
79728387 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
79728427 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
79728467 CCGGATAT
1 CCGGATAT
79728475 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79732526 original size:31 final size:31
Alignment explanation
Indices: 79732488--79732575 Score: 140
Period size: 31 Copynumber: 2.8 Consensus size: 31
79732478 TTTAACGGTT
*
79732488 ACTGGGCCGAACCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
79732519 ACTGGGCCGAAGCCATTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
79732550 ACTGGGCCGAAGCCTTTACTATAAAT
1 ACTGGGCCGAAGCCTTTTC-ATAAAT
79732576 GGTATGGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 46 0.88
32 6 0.12
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:79732815 original size:25 final size:25
Alignment explanation
Indices: 79732787--79732856 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
79732777 CTCTTTTAAT
79732787 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
79732812 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
79732837 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
79732857 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:79733681 original size:25 final size:27
Alignment explanation
Indices: 79733652--79733704 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
79733642 TACGGAACAT
*
79733652 AAGGGAATT-C-GTCATTTTACCATAC
1 AAGGGAATTACGGTCACTTTACCATAC
* *
79733677 AAGGGTATTACGGTCACTTTACCCTAC
1 AAGGGAATTACGGTCACTTTACCATAC
79733704 A
1 A
79733705 GGGGCTTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 1 0.04
27 14 0.61
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (27 bp):
AAGGGAATTACGGTCACTTTACCATAC
Found at i:79733810 original size:27 final size:26
Alignment explanation
Indices: 79733780--79733968 Score: 105
Period size: 27 Copynumber: 7.0 Consensus size: 26
79733770 GTAAATCTAC
79733780 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTT-T
*
79733807 AAACCAATGGTATTTCTA-TAATTTTT
1 AAACCAAGGGTATTTC-AGTAATTTTT
* *
79733833 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTT-T
* * **
79733863 AAATCAGGGGTATTTTGGTAATTTTT
1 AAACCAAGGGTATTTCAGTAATTTTT
*** **
79733889 CAAATTGAGGGTATTTC-GATAATTTCAC
1 -AAACCAAGGGTATTTCAG-TAATTT-TT
*
79733917 AAACC-AGTGGTATTTCAGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTT-T
* * **
79733944 AAACTAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
79733969 ACAAACTAGG
Statistics
Matches: 129, Mismatches: 20, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
26 5 0.04
27 96 0.74
28 9 0.07
29 18 0.14
30 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
AAACCAAGGGTATTTCAGTAATTTTT
Found at i:79733969 original size:27 final size:27
Alignment explanation
Indices: 79733843--79733992 Score: 146
Period size: 27 Copynumber: 5.6 Consensus size: 27
79733833 AGAAAGTCAA
**
79733843 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
* *
79733870 GGGTATTTTGGTAATTTTTCAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
79733896 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* **
79733924 TGGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
79733951 GGGTATTTTGGTAATTTTACAAACTA-
1 GGGTATTTTGGTAATTTTACAAACTAG
79733977 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
79733993 CTATCCTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 18 0.17
27 84 0.82
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:79734061 original size:27 final size:27
Alignment explanation
Indices: 79734024--79734302 Score: 362
Period size: 27 Copynumber: 10.3 Consensus size: 27
79734014 GTAATTTCAC
*
79734024 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
79734051 AA-CTGAGGGTAAAATGATAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
79734078 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
79734105 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
79734132 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
79734159 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
79734186 AATCGAGGGTAAAATGGTAGTTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
79734213 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * * *
79734240 AATCGAGGGTGAAACGATAATCCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* **
79734267 AATCGAGGGTAAAATGGTAGTTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
79734294 AATCGAGGG
1 AATCGAGGG
79734303 CATTTCAGTA
Statistics
Matches: 220, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 218 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:79734140 original size:81 final size:81
Alignment explanation
Indices: 79734024--79734302 Score: 443
Period size: 81 Copynumber: 3.4 Consensus size: 81
79734014 GTAATTTCAC
* *
79734024 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGATAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGATAATTTTGTAAATCGAGGGT
79734088 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTGTA
*
79734105 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
79734170 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* * *
79734186 AATCGAGGGTAAAATGGTAGTTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
* * *
79734251 AAACGATAATCCTATA
66 AAACGGTAATTCTGTA
* *
79734267 AATCGAGGGTAAAATGGTAGTTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
79734303 CATTTCAGTA
Statistics
Matches: 186, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
81 185 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:79736224 original size:16 final size:16
Alignment explanation
Indices: 79736200--79736230 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79736190 AGGATGAAAT
*
79736200 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
79736216 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
79736231 AGATAGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:79736231 original size:11 final size:11
Alignment explanation
Indices: 79736196--79736231 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
79736186 ACTAAGGATG
*
79736196 AAATAAAATTA
1 AAATAAAATAA
*
79736207 AAATAAAAGAA
1 AAATAAAATAA
79736218 AAATAAAATAA
1 AAATAAAATAA
79736229 AAA
1 AAA
79736232 GATAGTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:79745366 original size:17 final size:17
Alignment explanation
Indices: 79745340--79745407 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
79745330 GTGAAAAATA
*
79745340 ATAAATAATAATATAGT
1 ATAAAAAATAATATAGT
*
79745357 ATAAAAAAT-AT-TCG-
1 ATAAAAAATAATATAGT
* *
79745371 ATGAAAAAAAAACTATGGT
1 AT-AAAAAATAA-TATAGT
*
79745390 ATATAAAATAATATAGT
1 ATAAAAAATAATATAGT
79745407 A
1 A
79745408 GGTCTATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
14 2 0.05
15 8 0.21
16 3 0.08
17 15 0.38
18 9 0.23
19 2 0.05
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (17 bp):
ATAAAAAATAATATAGT
Found at i:79747025 original size:52 final size:52
Alignment explanation
Indices: 79746969--79747146 Score: 187
Period size: 52 Copynumber: 3.3 Consensus size: 52
79746959 GAATTCAAGT
* *
79746969 AGAAGGGATTTGTAGCCTCGGCCTACTACATTGAAACTTCGGAGATTCAGGG
1 AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCGGAGATTCAGGG
** ** * * *
79747021 AGAAGAGATTTGTAGTTTCGATCTTCT-CTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGTAGCCTCGGCCTACTAC-ACTGAAACTTC--GG----AG-ATTCAGGG
*
79747080 AGAAGGGATTTGTAGCCTCGGCCTACTACACTGAAACTTCGGAGATTCAGGG
1 AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCGGAGATTCAGGG
79747132 AGAAGAGATTTGTAG
1 AGAAGAGATTTGTAG
79747147 TTTCGATCTT
Statistics
Matches: 99, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
51 1 0.01
52 51 0.52
53 2 0.02
54 2 0.02
57 2 0.02
58 2 0.02
59 38 0.38
60 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (52 bp):
AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCGGAGATTCAGGG
Found at i:79747090 original size:59 final size:59
Alignment explanation
Indices: 79747021--79747195 Score: 213
Period size: 59 Copynumber: 3.1 Consensus size: 59
79747011 AGATTCAGGG
79747021 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
* ** ** * * *
79747080 AGAAGGGATTTGTAGCCTCGGCCTACTAC-ACTGAAACTTC--GG----AG-ATTCAGGG
1 AGAAGAGATTTGTAGTTTCGATCTTCT-CTACTGAAACTTCAAGGACTTAGAATTCAAGT
79747132 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
79747191 AGAAG
1 AGAAG
79747196 GGATATAAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
51 1 0.01
52 38 0.42
53 2 0.02
54 2 0.02
57 2 0.02
58 2 0.02
59 43 0.47
60 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (59 bp):
AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
Found at i:79747102 original size:111 final size:111
Alignment explanation
Indices: 79746882--79747199 Score: 548
Period size: 111 Copynumber: 2.9 Consensus size: 111
79746872 AGCCATGATT
* * * * * **
79746882 TACTCCACTGGAACTTCCGAGATTGAGGGAGAAGATATTTGTAGCCTCGATCTTCTCTACT-AAA
1 TACTACACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
*
79746946 TTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
66 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
*
79746992 TACTACATTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
1 TACTACACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
79747057 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
66 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
79747103 TACTACACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
1 TACTACACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
79747168 CTTCAAGGACTTAGAATTCAAGTAGAAGGGAT
66 CTTCAAGGACTTAGAATTCAAGTAGAAGGGAT
79747200 ATAAAATTTG
Statistics
Matches: 197, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
110 53 0.27
111 144 0.73
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (111 bp):
TACTACACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
Found at i:79747486 original size:14 final size:14
Alignment explanation
Indices: 79747467--79747502 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
79747457 AGTTGATTTT
79747467 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
79747481 TTTGAAAAGCATAA
1 TTTGAAAAGCAGAA
*
79747495 ATTGAAAA
1 TTTGAAAA
79747503 AATGAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.25
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:79747803 original size:74 final size:74
Alignment explanation
Indices: 79747702--79747911 Score: 348
Period size: 74 Copynumber: 2.8 Consensus size: 74
79747692 CCTCGGCGTA
*
79747702 TGACCTGAGGTTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATAC
1 TGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATAC
79747767 CTCACTATG
66 CTCACTATG
79747776 TGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATAC
1 TGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATAC
* **
79747841 GTCGTTATG
66 CTCACTATG
* * * *
79747850 CGACCCGAGGCTCAATTCACCTTTAGCAATATAAATTGATTTTTGAAAACATAAATTGAAAA
1 TGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAA
79747912 ACAGAAATAG
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 128 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (74 bp):
TGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATAC
CTCACTATG
Found at i:79747958 original size:160 final size:160
Alignment explanation
Indices: 79747747--79748052 Score: 397
Period size: 160 Copynumber: 1.9 Consensus size: 160
79747737 TTGATTTTTG
* * *
79747747 AAAACATAAATTGAAAATACCTCACTATGTGACCTGAGGCTCAATTCACCTCTAGCAATATGAAT
1 AAAACAGAAATAGAAAATACCTCACTATGT-ACCTGAGGCTCAACTCACCTCTAGCAATATGAAT
* * * *
79747812 TGATTTTTGA-AAACA-TAAATTGAAAATACGTC-GTTATGCGACCCGAGGCTCAATTCACCTTT
65 TGATTTTTGACAAACAGT-AATTGAAAATACCTCAG-CATGC--CCCGAGGCTCAACTCACCTCT
79747874 AGCAATATAAATTGATTTTTGAAAACATAAATTGA
126 AGCAATATAAATTGATTTTTGAAAACATAAATTGA
* * *
79747909 AAAACAGAAATAGAAAATACCTCAGC-ATGT-CCTGAGGCTCAACTCACCTCTCGCAGTATGAGT
1 AAAACAGAAATAGAAAATACCTCA-CTATGTACCTGAGGCTCAACTCACCTCTAGCAATATGAAT
* *
79747972 TGATTTTTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
65 TGATTTTTGACAAACAGTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTAGCA
* *
79748037 ATATGAGTTGATTTTT
130 ATATAAATTGATTTTT
79748053 TTGACAAACA
Statistics
Matches: 126, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
159 36 0.29
160 39 0.31
161 22 0.17
162 28 0.22
163 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (160 bp):
AAAACAGAAATAGAAAATACCTCACTATGTACCTGAGGCTCAACTCACCTCTAGCAATATGAATT
GATTTTTGACAAACAGTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTAGCAA
TATAAATTGATTTTTGAAAACATAAATTGA
Found at i:79748029 original size:73 final size:72
Alignment explanation
Indices: 79747905--79748124 Score: 323
Period size: 73 Copynumber: 3.0 Consensus size: 72
79747895 AAAACATAAA
* * * * * *
79747905 TTGAAAAACAGAAATAGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA-TATGA
79747970 GTTGATTT
65 GTTGATTT
79747978 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC-ATATGA
79748043 GTTGATTTTT
65 GTTGA--TTT
* * *
79748053 TTGACAAACAATAATTGAAAATACCTTAGCGTACCCCGAGGCTCAACTCACCTCTCGCATATGAG
1 TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATATGAG
79748118 TTGATTT
66 TTGATTT
79748125 AGAAAGCAGA
Statistics
Matches: 135, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
72 3 0.02
73 62 0.46
74 12 0.09
75 58 0.43
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (72 bp):
TTGACAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATATGAG
TTGATTT
Found at i:79748090 original size:75 final size:75
Alignment explanation
Indices: 79747921--79748295 Score: 320
Period size: 75 Copynumber: 4.9 Consensus size: 75
79747911 AACAGAAATA
* ** * *
79747921 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGA--TTTTTGACA
1 GAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
*
79747984 AACAGTAATT
66 AACAATAATT
*
79747994 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
1 GAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
79748059 AACAATAATT
66 AACAATAATT
* ****
79748069 GAAAATACCTTAGCGTACCCCGAGGCTCAACTCACCTCTCGC-ATATGAGTTGATTTAGAAAGCA
1 GAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT----TTTT
79748133 GACATAAAAACAGA-AATT
62 GAC----AAACA-ATAATT
* * * * * *
79748151 GAAAGTGA-CTCAACACGTGA-GCCAAGGCTCAACTCACCTTTCTCAATATGAGTTGATTTTTTT
1 GAAAAT-ACCTC-A-GCGT-ACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
79748214 G--AAACTAGAATTT
62 GACAAACAATAA-TT
* * * *
79748227 AAAAAATACCTCGGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGA-TTTTTTGA
1 -GAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTTGA
79748291 -AAACA
64 CAAACA
79748296 GAAATGAAAC
Statistics
Matches: 245, Mismatches: 34, Indels: 43
0.76 0.11 0.13
Matches are distributed among these distances:
73 50 0.20
74 15 0.06
75 95 0.39
76 17 0.07
77 7 0.03
78 3 0.01
81 1 0.00
82 16 0.07
83 3 0.01
84 23 0.09
85 15 0.06
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (75 bp):
GAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
AACAATAATT
Found at i:79748095 original size:234 final size:230
Alignment explanation
Indices: 79747509--79748295 Score: 760
Period size: 234 Copynumber: 3.3 Consensus size: 230
79747499 AAAAAATGAA
*
79747509 AATTGAAAATACCTCAGCGTGCGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGC--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----T
* * * *
79747574 TTTTTGAAAAGCAGA-ACTTGAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCA
60 TTTTTGAAAA-CA-ATAATTGAAAATACCTTAGC--GT-ACCCGAGGCTCAACTCACCTCTCGCA
* *
79747638 ATATGAGTTAATTTTTTTGAGAAGCAGAAATTGAAAAA-A-AATCTATTGAAAATACCTCGGCGT
120 ATATGAGTTGA--TTTTTGA-AAGCAGAAATTGAAAAACAGAA---ATTGAAAATACCTCAGC--
* * * *
79747701 ATGACCTGAGGTTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACA-T
177 ATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGT
* * * * *
79747754 AAATTGAAAATACCTCA-CTATGTGACCTGAGGCTCAATTCACCTCTAGCAATATGAATTGA-TT
1 -AATTGAAAATACCTCAGC---GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
79747817 TTTGAAAAC-ATAAATTGAAAATACGTCGTTATGCG-ACCCGAGGCTCAATTCACCTTTAGCAAT
62 TTTGAAAACAAT-AATTGAAAATAC--C-TTA-GCGTACCCGAGGCTCAACTCACCTCTCGCAAT
* * * * * *
79747880 ATAAATTGATTTTTGAAAACATAAATTGAAAAACAGAAATAGAAAATACCTCAGCATGTCCTGAG
122 ATGAGTTGATTTTTGAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGACCTGAG
*
79747945 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGACAAACAGT
187 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGT
79747990 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
79748055 GACAAACAATAATTGAAAATACCTTAGCGTACCCCGAGGCTCAACTCACCTCTCGC-ATATGAGT
65 GA-AAACAATAATTGAAAATACCTTAGCGTA-CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
79748119 TGA-TTTAGAAAGCAGACA-T-AAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGC
128 TGATTTTTGAAAGCAGAAATTGAAAAACAGAAATTGAAAAT-ACCTCAGCA--TGA-CCTGAGGC
* *
79748179 TCAACTCACCTTTCTCAATATGAGTTGATTTTTTTG-AAACTAG-
189 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAC-AGT
* * *
79748222 AATTTAAAAAATACCTCGGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTT
1 AA-TT-GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTT
79748287 TTGAAAACA
63 TTGAAAACA
79748296 GAAATGAAAC
Statistics
Matches: 460, Mismatches: 51, Indels: 73
0.79 0.09 0.12
Matches are distributed among these distances:
230 23 0.05
231 2 0.00
232 51 0.11
233 59 0.13
234 118 0.26
235 38 0.08
236 33 0.07
237 17 0.04
238 9 0.02
239 2 0.00
240 41 0.09
241 10 0.02
242 2 0.00
243 2 0.00
244 2 0.00
245 1 0.00
246 47 0.10
248 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (230 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAACAATAATTGAAAATACCTTAGCGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTGAAAACAGT
Found at i:79762735 original size:48 final size:48
Alignment explanation
Indices: 79762627--79762845 Score: 237
Period size: 48 Copynumber: 4.6 Consensus size: 48
79762617 TGAGATCCTA
* * * * * *
79762627 TGTAAGACCATGTCTCGGACATGGC-TTGGCATCAAGATGAGAT-CTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTG-TGCTAG
* * *
79762674 TATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGCTAG
* ** * *
79762722 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACGTGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGCTAG
* *
79762770 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAT-TTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTG-TGCTAG
* *
79762818 TATAAGACCATGTCTAGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
79762846 ATTATGAGAC
Statistics
Matches: 144, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
47 24 0.17
48 120 0.83
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGCTAG
Found at i:79773639 original size:21 final size:21
Alignment explanation
Indices: 79773606--79773645 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79773596 ACAACGCAAA
* *
79773606 AAAGTATGGTTTTCCTAAAAT
1 AAAGTAAGATTTTCCTAAAAT
*
79773627 AAAGTAAGATTTTCGTAAA
1 AAAGTAAGATTTTCCTAAA
79773646 TGAAATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
AAAGTAAGATTTTCCTAAAAT
Found at i:79788430 original size:23 final size:22
Alignment explanation
Indices: 79788400--79788495 Score: 84
Period size: 23 Copynumber: 4.2 Consensus size: 22
79788390 TAACATTCCA
*
79788400 TAGAATGAATCACATCAAAGTGC
1 TAGAATGAATCGCA-CAAAGTGC
* *
79788423 TAGAATGAGTCGCACAGATGTGC
1 TAGAATGAATCGCACA-AAGTGC
* * *
79788446 CAGAATGGATCCCACTAAAGTGC
1 TAGAATGAATCGCAC-AAAGTGC
* *
79788469 CAAAATGAATCGCACCAAAGTGC
1 TAGAATGAATCGCA-CAAAGTGC
79788492 TAGA
1 TAGA
79788496 TTGCTCCCAC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
22 2 0.04
23 53 0.93
24 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.19
Consensus pattern (22 bp):
TAGAATGAATCGCACAAAGTGC
Found at i:79797799 original size:23 final size:23
Alignment explanation
Indices: 79797769--79797824 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
79797759 TTATATATGC
79797769 TTTTTTATTCTCAAAAAGAATGG
1 TTTTTTATTCTCAAAAAGAATGG
79797792 TTTTTTATTCTCAAAAAGAATGG
1 TTTTTTATTCTCAAAAAGAATGG
79797815 TTTTTT-TTCT
1 TTTTTTATTCT
79797825 TTTTTTATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.52
Consensus pattern (23 bp):
TTTTTTATTCTCAAAAAGAATGG
Found at i:79802229 original size:19 final size:20
Alignment explanation
Indices: 79802201--79802241 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
79802191 TTTGCTTCTT
79802201 AAAAAGCTTCATTAATTACC
1 AAAAAGCTTCATTAATTACC
79802221 AAAAA-CTTCATTAATTACC
1 AAAAAGCTTCATTAATTACC
79802240 AA
1 AA
79802242 CAATTTGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAGCTTCATTAATTACC
Found at i:79804729 original size:46 final size:45
Alignment explanation
Indices: 79804656--79804856 Score: 181
Period size: 46 Copynumber: 4.3 Consensus size: 45
79804646 CCAATGCCCT
79804656 AGACATGGTCTTACACTGGC-TATCATCTCATAGCCGACGCATGTCCC
1 AGACAT-GTCTTACACTGGCTTA-CATCTCA-AGCCGACGCATGTCCC
* *
79804703 AGACATGTCTTACACTGGCTTACATCTCGAGGTCGACGCATGTCCC
1 AGACATGTCTTACACTGGCTTACATCTC-AAGCCGACGCATGTCCC
* * * *
79804749 AGACATGTCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTCCC
1 AGACATGTCTTACACTGGC-TTACATCTCAA-GCCGACG-CATGTCCC
* * * *** *
79804796 AGAAATGGTCTTACACTGGCTTTCATAATGTGGCCGATGCATGTCCC
1 AGACAT-GTCTTACACTGGCTTACAT-CTCAAGCCGACGCATGTCCC
*
79804843 AGCCATGTCTTACA
1 AGACATGTCTTACA
79804857 ATAGCTCATA
Statistics
Matches: 128, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
45 1 0.01
46 69 0.54
47 36 0.28
48 21 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
AGACATGTCTTACACTGGCTTACATCTCAAGCCGACGCATGTCCC
Found at i:79804817 original size:94 final size:92
Alignment explanation
Indices: 79804656--79804862 Score: 240
Period size: 94 Copynumber: 2.2 Consensus size: 92
79804646 CCAATGCCCT
* *
79804656 AGACATGGTCTTACACTGGCTATCATCTCATAGCCGACGCATGTCCCAGACATGTCTTACACTGG
1 AGACAT-GTCTTACACTAGCTATCATCTCATAGCCGACGCATGTCCCAGAAATGTCTTACACTGG
* *
79804721 CTTACAT-CTCGAGGTCGACGCATGTCCC
65 CTTACATAAT-GAGGCCGACGCATGTCCC
* *
79804749 AGACATGTCTTACACTAGC-ACTCGTCTCA-ATGCCGATGCCATGTCCCAGAAATGGTCTTACAC
1 AGACATGTCTTACACTAGCTA-TCATCTCATA-GCCGACG-CATGTCCCAGAAAT-GTCTTACAC
* * *
79804812 TGGCTTTCATAATGTGGCCGATGCATGTCCC
62 TGGCTTACATAATGAGGCCGACGCATGTCCC
* *
79804843 AGCCATGTCTTACAATAGCT
1 AGACATGTCTTACACTAGCT
79804863 CATACAAGTG
Statistics
Matches: 97, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
91 2 0.02
92 25 0.26
93 19 0.20
94 50 0.52
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
AGACATGTCTTACACTAGCTATCATCTCATAGCCGACGCATGTCCCAGAAATGTCTTACACTGGC
TTACATAATGAGGCCGACGCATGTCCC
Found at i:79812369 original size:46 final size:46
Alignment explanation
Indices: 79812282--79812500 Score: 205
Period size: 47 Copynumber: 4.7 Consensus size: 46
79812272 GGTAAGGTGT
* *
79812282 CGATGCCATGTCCCAGACTTGGTCTTACACTGAC-TATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGTAGC
* *
79812330 CGACGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGC
* * * * *
79812375 TGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCGTA-GC
* * * *
79812421 CGATGCCATGTCACAGACATGGTCTTACACTGGCTTTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGTAGC
*
79812469 CGATGCATGTCCCAGCCATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
79812501 ATGAATATCC
Statistics
Matches: 142, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 37 0.26
46 38 0.27
47 41 0.29
48 25 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGC
Found at i:79812478 original size:47 final size:46
Alignment explanation
Indices: 79812282--79812500 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 46
79812272 GGTAAGGTGT
* * * *
79812282 CGATGCCATGTCCCAGACTTGGTCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCATATCGTAGC
* * * *
79812330 CGACGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATCGTAGC
* * ** * * *
79812375 TGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATCGTA-GC
* *
79812421 CGATGCCATGTCACAGACATGGTCTTACACTGGCTTTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCAT-ATCGTAGC
*
79812469 CGATGCATGTCCCAGCCATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
79812501 ATGAATATCC
Statistics
Matches: 140, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
45 37 0.26
46 38 0.27
47 38 0.27
48 26 0.19
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATCGTAGC
Found at i:79815907 original size:46 final size:46
Alignment explanation
Indices: 79815745--79816051 Score: 137
Period size: 48 Copynumber: 6.5 Consensus size: 46
79815735 ATATGTGTGG
* *
79815745 TAGTGTAAGACATATCTGGGACATGCATCAGCCAT--AGCATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATC-GACATCGAG-ATGAGAGC
* * * * * * * *
79815791 CAGTGCAAGACATGACTAGGACATGCATTGGCCTCGAGAT-ATTTAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATGA---GAGC
* * * *
79815839 CAGTGTGAGACATGT-TATGGACATGCATCGACATTGAGATGAGAGC
1 TAGTGTAAGACATGTCT-GGGACATGCATCGACATCGAGATGAGAGC
* * * * *
79815885 TAGTGTAAGACATGTCTGGGACAAGCATTGACCTCGCGACAT-ACAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACAT--CGAGATGA-GAGC
* * * * * * ***
79815933 TAGTGTAAGACTTGTCTAGGACATGGCGTC-AGC-TTGTG--GTGTTT
1 TAGTGTAAGACATGTCTGGGACAT-GCATCGA-CATCGAGATGAGAGC
* *
79815977 TAGTGTAAGACCTGTCTGGGACATGGCATCGACAACGATAGATGAGAGC
1 TAGTGTAAGACATGTCTGGGACAT-GCATCGACATCG--AGATGAGAGC
*
79816026 CAGTGTAAGACCATGTCTGGGACATG
1 TAGTGTAAGA-CATGTCTGGGACATG
79816052 GCGTTGGCAT
Statistics
Matches: 188, Mismatches: 52, Indels: 39
0.67 0.19 0.14
Matches are distributed among these distances:
44 28 0.15
45 6 0.03
46 55 0.29
47 6 0.03
48 63 0.34
49 17 0.09
50 13 0.07
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATGAGAGC
Found at i:79815938 original size:94 final size:94
Alignment explanation
Indices: 79815746--79815957 Score: 232
Period size: 94 Copynumber: 2.3 Consensus size: 94
79815736 TATGTGTGGT
* * *
79815746 AGTGTAAGACATATCTGGGACATGCATCAGCCA-T-AGCATGAGAGCCAGTGCAAGACATGACTA
1 AGTGTAAGACATGTCTAGGACATGCATC-GACATTGAG-ATGAGAGCCAGTGCAAGACATGACTA
* * * **
79815809 GGACATGCATTGGCCTCGAGATATTTAAGCC
64 GGACAAGCATTGACCTCGAGACATACAAGCC
* * * * *
79815840 AGTGTGAGACATGT-TATGGACATGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTA-GGACATGCATCGACATTGAGATGAGAGCCAGTGCAAGACATGACTAG
* *
79815904 GACAAGCATTGACCTCGCGACATACAAGCT
65 GACAAGCATTGACCTCGAGACATACAAGCC
*
79815934 AGTGTAAGACTTGTCTAGGACATG
1 AGTGTAAGACATGTCTAGGACATG
79815958 GCGTCAGCTT
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
93 4 0.04
94 89 0.92
95 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACATTGAGATGAGAGCCAGTGCAAGACATGACTAGG
ACAAGCATTGACCTCGAGACATACAAGCC
Found at i:79821442 original size:79 final size:79
Alignment explanation
Indices: 79821298--79821516 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
79821288 GAATCACATA
* * * * *
79821298 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
79821362 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
79821377 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
79821440 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
79821456 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
79821517 TATCATTTGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:79821445 original size:39 final size:41
Alignment explanation
Indices: 79821312--79821516 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
79821302 CGGAATTTAA
* *
79821312 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79821352 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79821392 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79821431 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79821471 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79821512 CCGGA
1 CCGGA
79821517 TATCATTTGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79827194 original size:49 final size:49
Alignment explanation
Indices: 79827093--79827225 Score: 137
Period size: 49 Copynumber: 2.7 Consensus size: 49
79827083 TGTGGTGTGT
* *
79827093 CAGTGTAAGACTTGTCTGGGACATGGCATC-GACACCAATAGATGAGAAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-CACCAATACATGAGAAC
* **
79827142 CAGTGTAAGACCTATCTGGGACATGGCATCAGC-CTCGCTACATGA-AAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCAC-CAATACATGAGAA-C
* * *
79827191 CAGTCTAAAACCATGTCTGGGACATGGCGTCAGCA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCAGCA
79827226 TCTTAACCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
48 3 0.04
49 47 0.67
50 20 0.29
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCACCAATACATGAGAAC
Found at i:79831434 original size:47 final size:47
Alignment explanation
Indices: 79831371--79831710 Score: 536
Period size: 47 Copynumber: 7.2 Consensus size: 47
79831361 CCCTTCGGGA
* *
79831371 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
79831418 CTTATCACATATATACACATTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
79831465 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79831512 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79831559 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79831606 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79831653 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79831700 CTTATCACATA
1 CTTATCACATA
79831711 CACATATCTT
Statistics
Matches: 266, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:79831535 original size:94 final size:94
Alignment explanation
Indices: 79831371--79831710 Score: 590
Period size: 94 Copynumber: 3.6 Consensus size: 94
79831361 CCCTTCGGGA
* *
79831371 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
79831436 ATTCACATCCATCACATCGGCCATTAGGT
66 TTTCACATTCATCACATCGGCCATTAGGC
*
79831465 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
79831530 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
79831559 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
79831624 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
79831653 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
79831711 CACATATCTT
Statistics
Matches: 235, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 235 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:79846319 original size:38 final size:38
Alignment explanation
Indices: 79846277--79846353 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
79846267 GCTTAGATTA
79846277 TCAATAGTTACAAAATGTAGATTATTTGTATGTGTACT
1 TCAATAGTTACAAAATGTAGATTATTTGTATGTGTACT
79846315 TCAATAGTTACAAAATGTAGATTATTTGTATGTGTACT
1 TCAATAGTTACAAAATGTAGATTATTTGTATGTGTACT
79846353 T
1 T
79846354 ACTAAGCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.43
Consensus pattern (38 bp):
TCAATAGTTACAAAATGTAGATTATTTGTATGTGTACT
Found at i:79850100 original size:49 final size:49
Alignment explanation
Indices: 79850038--79850712 Score: 1091
Period size: 49 Copynumber: 14.0 Consensus size: 49
79850028 ATGTAGGAGA
79850038 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
79850087 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
79850136 AG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
79850183 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* *
79850232 AG--TATATATGTGATAAGGCCTAATGTCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
79850279 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
79850328 AG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
79850375 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAGG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
79850424 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
79850473 TGGATATACACGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
79850522 AG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
79850569 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
79850618 AG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
79850665 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
79850713 TATATGTGTG
Statistics
Matches: 580, Mismatches: 36, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
47 217 0.37
49 363 0.63
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:79850205 original size:96 final size:96
Alignment explanation
Indices: 79850042--79850712 Score: 1189
Period size: 96 Copynumber: 7.0 Consensus size: 96
79850032 AGGAGATGTA
* * *
79850042 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
79850107 CCTAATGGCCAATGTGATGAATGTGAAAGAG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG
79850138 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
79850203 CCTAATGGCCAATGTGATGAATGTGAAAGAG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG
* * * *
79850234 TATATATGTGATAAGGCCTAATGTCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
79850299 CCTAATGGCCAATGTGATGAATGTGAAAGAG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG
79850330 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
* *
79850395 CCTAATGGCCAATGTGATGAATGTGAAGGTG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG
* * * * *
79850426 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGGATATACACGTGATAA
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAA
79850491 GGCCTAATGGCCAATGTGATGAATGTGAAAGAG
64 GGCCTAATGGCCAATGTGATGAATGTGAAAGAG
79850524 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
79850589 CCTAATGGCCAATGTGATGAATGTGAAAGAG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG
79850620 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
*
79850685 CCTAATGGCCGATGTGATGAATGTGAAA
66 CCTAATGGCCAATGTGATGAATGTGAAA
79850713 TATATGTGTG
Statistics
Matches: 547, Mismatches: 26, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
96 458 0.84
98 89 0.16
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGAG
Found at i:79850301 original size:145 final size:144
Alignment explanation
Indices: 79850041--79850712 Score: 1073
Period size: 145 Copynumber: 4.6 Consensus size: 144
79850031 TAGGAGATGT
79850041 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAG
* *
79850106 GCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCGATGT
64 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
*
79850169 GATGAATGTGAAGGTG
129 GATGAATGTGAAAGTG
*
79850185 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGG
1 -ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
79850250 CCTAATGTCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTG
65 CCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
*
79850315 ATGAATGTGAAAGAG
130 ATGAATGTGAAAGTG
* *
79850330 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
*
79850394 GCCTAATGGCCAATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
64 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
79850459 GATGAATGTGAAAGTGG
129 GATGAATGTGAAAGT-G
* * *
79850476 ATATACACGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* *
79850541 CTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
66 CTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
*
79850606 TGAATGTGAAAGAG
131 TGAATGTGAAAGTG
* *
79850620 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
*
79850684 GCCTAATGGCCGATGTGATGAATGTGAAA
64 GCCTAATGGCCAATGTGATGAATGTGAAA
79850713 TATATGTGTG
Statistics
Matches: 492, Mismatches: 27, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
143 126 0.26
144 1 0.00
145 322 0.65
146 1 0.00
147 42 0.09
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (144 bp):
ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
CTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
TGAATGTGAAAGTG
Found at i:79850761 original size:48 final size:48
Alignment explanation
Indices: 79850704--79850855 Score: 268
Period size: 48 Copynumber: 3.2 Consensus size: 48
79850694 CGATGTGATG
*
79850704 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
*
79850752 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
* *
79850800 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGTCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
79850848 AATGTGAA
1 AATGTGAA
79850856 TGTTGTAACA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
Found at i:79850949 original size:37 final size:37
Alignment explanation
Indices: 79850895--79850985 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
79850885 AACTTGGAAA
*
79850895 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
79850933 TATGTCCGGGTAAGACCCGTTGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
79850970 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
79850986 TTTGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:79852470 original size:31 final size:31
Alignment explanation
Indices: 79852426--79852542 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
79852416 TTAGTCTTGA
*
79852426 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTACATAAAT
* *
79852456 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTACATAAAT
79852487 CATATCACTGGGCCGAAGCCTTTACATAAAT
1 CATATCACTGGGCCGAAGCCTTTACATAAAT
*
79852518 CATATCACTGGGTCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
79852543 TGTAAACAGT
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATAAAT
Found at i:79852611 original size:42 final size:42
Alignment explanation
Indices: 79852564--79852655 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
79852554 TGGCCCTTAG
* * *
79852564 GCCCATTTCAGTATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAAAGAATGTATGCAA
79852606 GCCCATTTCAATATCACATGTAATGTCAAAGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAAAGAATGTATGCAA
*
79852648 TCCCATTT
1 GCCCATTT
79852656 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAAAGAATGTATGCAA
Found at i:79852830 original size:24 final size:24
Alignment explanation
Indices: 79852790--79852870 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
79852780 CTAGAGGCCT
*
79852790 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
79852814 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
79852838 AGCCCTTTTCG-TAAACTGGGGCAG
1 AGCCCTTTT-GATAAACTGGGGCAA
79852862 AGCCCTTTT
1 AGCCCTTTT
79852871 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 45 0.85
25 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:79853707 original size:27 final size:27
Alignment explanation
Indices: 79853677--79853741 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
79853667 GGGCATATTC
79853677 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
79853704 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
79853731 GTCTTTTTACC
1 GTCATTTTACC
79853742 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:79853825 original size:27 final size:26
Alignment explanation
Indices: 79853795--79853879 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 26
79853785 GTAAATCTAC
79853795 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAA-GGTATTTCAGTAATTTTGT
79853822 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAA-GGTATTTC-AGTAATTTTGT
* *
79853848 AGAAAGTCAAGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGTATTTCAGTAATTTTGT
79853877 AAA
1 AAA
79853880 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
26 1 0.02
27 25 0.51
28 19 0.39
29 4 0.08
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.40
Consensus pattern (26 bp):
AAACCAAGGTATTTCAGTAATTTTGT
Found at i:79853888 original size:27 final size:27
Alignment explanation
Indices: 79853858--79854040 Score: 183
Period size: 27 Copynumber: 6.8 Consensus size: 27
79853848 AGAAAGTCAA
** *
79853858 GGTATTTCT-GTAATTTTGTAAATTAGG
1 GGTATTT-TGGTAATTTTACAAACTAGG
*
79853885 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * * *
79853912 GGTATTTCGATAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
*
79853939 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
79853966 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
* **
79853993 GGTATTTTGGTAATTCTATCCTAC-AGG
1 GGTATTTTGGTAATTTTA-CAAACTAGG
* *
79854020 GGTATTTTAGTAATTTCACAA
1 GGTATTTTGGTAATTTTACAA
79854041 TCGAGGGTAA
Statistics
Matches: 130, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
26 4 0.03
27 122 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:79854073 original size:27 final size:27
Alignment explanation
Indices: 79854039--79854236 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
79854029 GTAATTTCAC
* * *
79854039 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
79854066 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
79854093 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
79854120 AATCGAAGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
79854147 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
79854174 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
79854201 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
79854228 AATCGAGGG
1 AATCGAGGG
79854237 CATTTCAGTA
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 150 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:79854155 original size:81 final size:81
Alignment explanation
Indices: 79854039--79854236 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
79854029 GTAATTTCAC
** * * *
79854039 AATCGAGGGTAAAACAGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
79854103 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* *
79854120 AATCGAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
79854185 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
79854201 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
79854237 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:79854248 original size:81 final size:81
Alignment explanation
Indices: 79854082--79854256 Score: 269
Period size: 81 Copynumber: 2.2 Consensus size: 81
79854072 GGGTAAAATG
*
79854082 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACA
* *
79854147 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* *
79854163 GTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACA
***
79854228 AATCGAGGGCATTTCA
66 AATCGAGGGCAAAACA
*
79854244 GTAATTTGGTAAA
1 GTAATTTTGTAAA
79854257 CTAAAGTATT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:79856517 original size:31 final size:31
Alignment explanation
Indices: 79856482--79856573 Score: 166
Period size: 31 Copynumber: 3.0 Consensus size: 31
79856472 TTGACATATA
*
79856482 TGGGCCGAAGCCTTTCCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
79856513 TGGGCCAAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
79856544 TGGGCCGAAGCCTTTTCATAAATCATATCA
1 TGGGCCGAAGCCTTTTCATAAATCATATCA
79856574 TAAATCATAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:79856576 original size:12 final size:12
Alignment explanation
Indices: 79856559--79856585 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79856549 CGAAGCCTTT
79856559 TCATAAATCATA
1 TCATAAATCATA
79856571 TCATAAATCATA
1 TCATAAATCATA
79856583 TCA
1 TCA
79856586 CTGGGCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (12 bp):
TCATAAATCATA
Found at i:79856589 original size:43 final size:43
Alignment explanation
Indices: 79856528--79856616 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
79856518 CAAAGCCTTT
*
79856528 TCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
1 TCATAAATCATATCACTGGGCCAAAGCCTTTTCATAAATCATA
79856571 TCATAAATCATATCACTGGGCCAAAGCCTTTTCATAAATCATA
1 TCATAAATCATATCACTGGGCCAAAGCCTTTTCATAAATCATA
79856614 TCA
1 TCA
79856617 CTGGCCGAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (43 bp):
TCATAAATCATATCACTGGGCCAAAGCCTTTTCATAAATCATA
Found at i:79856630 original size:30 final size:31
Alignment explanation
Indices: 79856571--79856631 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
79856561 ATAAATCATA
79856571 TCATAAATCATATCACTGGGCCAAAGCCTTT
1 TCATAAATCATATCACTGGGCCAAAGCCTTT
*
79856602 TCATAAATCATATCACT-GGCCGAAGCCTTT
1 TCATAAATCATATCACTGGGCCAAAGCCTTT
79856632 ACTGTAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (31 bp):
TCATAAATCATATCACTGGGCCAAAGCCTTT
Found at i:79856706 original size:42 final size:42
Alignment explanation
Indices: 79856659--79856746 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
79856649 CCTTAGGCCT
*
79856659 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
79856701 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
79856743 ATTT
1 ATTT
79856747 GGGAGGCTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (42 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
Found at i:79856921 original size:25 final size:25
Alignment explanation
Indices: 79856893--79856962 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
79856883 CTCTTTTAAT
79856893 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
79856918 AACTGGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
79856943 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
79856963 AGCATTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:79857919 original size:27 final size:27
Alignment explanation
Indices: 79857889--79857940 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
79857879 GTAAATCTAC
79857889 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCAATAATTTTGT
* *
79857916 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCAATAATTTT
79857941 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAATAATTTTGT
Found at i:79857992 original size:27 final size:27
Alignment explanation
Indices: 79857953--79858101 Score: 174
Period size: 27 Copynumber: 5.5 Consensus size: 27
79857943 GAAAGTCAAC
* ** *
79857953 GGTATTTTTGTAATTTTGTAAATTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
79857980 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * * *
79858007 GGTATTTCGATAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
**
79858034 GGTATTTCAGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
79858061 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
79858088 GGTATTTTGGTAAT
1 GGTATTTTGGTAAT
79858102 CCTATCCTAC
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 100 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:79858038 original size:54 final size:54
Alignment explanation
Indices: 79857977--79858135 Score: 162
Period size: 54 Copynumber: 2.9 Consensus size: 54
79857967 TTTGTAAATT
*
79857977 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACC
* ** * * * *
79858031 AGTGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACC
** **
79858085 AGGGGTATTTTGGTAATCCTATCCTAC-AGGGGTATTTC-AGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGA-TAATTTCACAA
79858136 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
54 79 0.94
55 5 0.06
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACC
Found at i:79858142 original size:27 final size:27
Alignment explanation
Indices: 79857977--79858142 Score: 124
Period size: 27 Copynumber: 6.1 Consensus size: 27
79857967 TTTGTAAATT
* * *
79857977 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTCGGTAATTTCACAAA-CG
* *
79858005 A-GGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTCGGTAATTTCACAAACG
* * * *
79858031 AGTGGTATTTCAGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACG
* * *
79858058 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACG
* *
79858085 AGGGGTATTTTGGTAATCCTATC-C-TAC-
1 AGGGGTATTTCGGTAAT--T-TCACAAACG
* *
79858112 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTCGGTAATTTCACAAACG
79858139 AGGG
1 AGGG
79858143 TAAAACAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
24 2 0.02
25 2 0.02
26 2 0.02
27 100 0.89
28 3 0.03
29 2 0.02
30 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAAACG
Found at i:79858168 original size:27 final size:27
Alignment explanation
Indices: 79858134--79858331 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
79858124 GTAATTTCAC
** * *
79858134 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
79858161 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
79858188 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
79858215 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
79858242 AATCGAGTGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
79858269 AATTGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
79858296 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
79858323 AATCGAGGG
1 AATCGAGGG
79858332 CATTTTAGTA
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 146 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:79858254 original size:81 final size:81
Alignment explanation
Indices: 79858134--79858331 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
79858124 GTAATTTCAC
** * * *
79858134 AATCGAGGGTAAAACAGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
* *
79858198 AAAATGGTAATTCTATA
65 AAAACGATAATTCTATA
* * *
79858215 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGTGTAAAATAGTAATTTTGTAAATTGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
79858280 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
79858296 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
79858332 CATTTTAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:79860148 original size:21 final size:21
Alignment explanation
Indices: 79860109--79860148 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79860099 GGACTAAATC
*
79860109 GAGAACTTTGAAAAATTTCAT
1 GAGAACTTAGAAAAATTTCAT
* *
79860130 GAGAACTTAGGAAATTTTC
1 GAGAACTTAGAAAAATTTC
79860149 CCATGAAACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (21 bp):
GAGAACTTAGAAAAATTTCAT
Found at i:79862252 original size:45 final size:47
Alignment explanation
Indices: 79862137--79862311 Score: 162
Period size: 50 Copynumber: 3.7 Consensus size: 47
79862127 TGAAATCGAG
79862137 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTCACATATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA---CTCACATATCCGT
* * *
79862187 GCCGATGCCATGTCCTAGACATGGTCTTACACTGA-T-ACATCT-TGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-ACTCACATATCCGT
* * * **
79862232 AGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTA-CTCACATATCCGT
* **
79862279 GCCAATGCCATGTTTCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
79862312 GGCTCACAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 16 0.15
46 22 0.21
47 14 0.13
48 10 0.09
50 32 0.30
51 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACTCACATATCCGT
Found at i:79862301 original size:92 final size:95
Alignment explanation
Indices: 79862137--79862312 Score: 243
Period size: 92 Copynumber: 1.9 Consensus size: 95
79862127 TGAAATCGAG
** *
79862137 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTCACATATCCGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCT-ACATATCAATGCCAATGCCATGTCC
79862202 TAGACATGGTCTTACACTGATACATCTTGTA
65 TAGACATGGTCTTACACTGATACATCTTGTA
* * * *
79862233 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGCCAATGCCATGT-TT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTACATATCAATGCCAATGCCATGTCCT
79862294 CAGACATGGTCTTACACTG
66 -AGACATGGTCTTACACTG
79862313 GCTCACAAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
91 1 0.01
92 35 0.49
94 15 0.21
95 14 0.19
96 7 0.10
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTACATATCAATGCCAATGCCATGTCCT
AGACATGGTCTTACACTGATACATCTTGTA
Found at i:79865371 original size:28 final size:28
Alignment explanation
Indices: 79865340--79865407 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
79865330 TATTTCACAT
*
79865340 ACTAAGTGTCATTCTCAATATCTCGCAC
1 ACTAAGTGCCATTCTCAATATCTCGCAC
* *
79865368 ACTAAGTGCCATTCTCAATATTTCGTAC
1 ACTAAGTGCCATTCTCAATATCTCGCAC
**
79865396 ACTGGGTGCCAT
1 ACTAAGTGCCAT
79865408 ATTTGATTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (28 bp):
ACTAAGTGCCATTCTCAATATCTCGCAC
Found at i:79872070 original size:14 final size:15
Alignment explanation
Indices: 79872053--79872081 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79872043 TCACGAAAAT
79872053 TTCACACAT-ATAAA
1 TTCACACATAATAAA
79872067 TTCACACATAATAAA
1 TTCACACATAATAAA
79872082 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:79881696 original size:40 final size:40
Alignment explanation
Indices: 79881588--79881797 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79881578 CGGGATTTAA
* * * * *
79881588 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79881628 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79881668 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79881708 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79881748 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79881788 CCGGATATAT
1 CCGGATATAT
79881798 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79889831 original size:40 final size:40
Alignment explanation
Indices: 79889723--79889932 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79889713 CGGGATTTAA
* * * * *
79889723 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79889763 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79889803 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79889843 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79889883 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79889923 CCGGATATAT
1 CCGGATATAT
79889933 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79893393 original size:37 final size:38
Alignment explanation
Indices: 79893283--79893456 Score: 139
Period size: 38 Copynumber: 4.6 Consensus size: 38
79893273 CTACTCGTCA
* * *
79893283 AATGCCTTCGGGACATAGCCCGGTTATAGTA-AC-CCGCAC
1 AATGCCTTCGGG-CTTAGCCCGGAT-TAG-ACACTTCGCAC
* * * *
79893322 AAGGCC-TCGGGACTTAACCCGGA-TATAC-GTTCGCAC
1 AATGCCTTCGGG-CTTAGCCCGGATTAGACACTTCGCAC
*
79893358 AATGCCTTCGGGCTTAG-CCGGATTAGAATAC-TCGCAC
1 AATGCCTTCGGGCTTAGCCCGGATTAG-ACACTTCGCAC
* * *
79893395 AATGCCTTCGGTCTTAGCCCGGATTAGCCACTTAGCAC
1 AATGCCTTCGGGCTTAGCCCGGATTAGACACTTCGCAC
79893433 AA-GCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGG-CTTAGCCCGGAT
79893457 ATCATTCGAA
Statistics
Matches: 109, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
35 6 0.06
36 18 0.17
37 38 0.35
38 42 0.39
39 5 0.05
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (38 bp):
AATGCCTTCGGGCTTAGCCCGGATTAGACACTTCGCAC
Found at i:79901070 original size:38 final size:38
Alignment explanation
Indices: 79900975--79901078 Score: 131
Period size: 40 Copynumber: 2.7 Consensus size: 38
79900965 ATAAGATCTT
* * *
79900975 GCACAAAGCCTTCGGGTCTTAGCCCGGATAGATATACTC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAGA-ACACTA
*
79901014 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA-TAGAACACTA
79901053 GCACAATGCCTTCGGGTCTTA-CCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
79901079 TTATAATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
37 5 0.08
38 17 0.29
39 11 0.19
40 23 0.39
41 3 0.05
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACACTA
Found at i:79902986 original size:40 final size:38
Alignment explanation
Indices: 79902801--79902979 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 38
79902791 GAATGATAGT
* * *
79902801 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
79902841 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCT-AG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
79902880 CC-GGCTAAG-CCCGAAGGCA--TGTGCGAGTTACTAAA
1 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79902915 TCCGGGTTAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
79902955 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTA-GTCCCGAAGGCATTTG
79902980 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 8, Indels: 20
0.81 0.05 0.13
Matches are distributed among these distances:
35 15 0.12
36 4 0.03
37 22 0.18
38 6 0.05
39 24 0.20
40 42 0.35
41 8 0.07
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79902992 original size:40 final size:39
Alignment explanation
Indices: 79902916--79902998 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 39
79902906 GTTACTAAAT
* ** *
79902916 CCGGGTTAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 CCGGGCTAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
*
79902955 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTA-GTCCCGAAGGCATTTGAACGAGTAGCTATAA
79902995 CCGG
1 CCGG
79902999 TTAAATCGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
39 7 0.18
40 31 0.82
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGGGCTAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:79907403 original size:143 final size:143
Alignment explanation
Indices: 79907145--79907442 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
79907135 GGTGAGTTAA
*
79907145 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
79907210 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
79907275 TGTGTGCATGAGT
131 TGTGTGCATGAGT
79907288 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
79907353 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
79907418 TGTGTGCATGAGT
131 TGTGTGCATGAGT
79907431 ATTCGGCCATGC
1 ATTCGGCCATGC
79907443 TATAGAATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGTGCATGAGT
Found at i:79908117 original size:29 final size:29
Alignment explanation
Indices: 79908084--79908216 Score: 167
Period size: 29 Copynumber: 4.6 Consensus size: 29
79908074 TGGTGACGAG
*
79908084 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAAT
*
79908113 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAAT
* *
79908142 AAGGCACTAAGTGTGCATGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAAT
* * **
79908171 ATGACACTATGTGTGCAAGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAAT
* **
79908200 ACGGCACTGGGTGTGCG
1 ATGGCACTAAGTGTGCG
79908217 AGCTCGGAGG
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGTGCTGGAAAAAT
Found at i:79911680 original size:47 final size:45
Alignment explanation
Indices: 79911532--79911744 Score: 182
Period size: 47 Copynumber: 4.6 Consensus size: 45
79911522 TTTGTGCGCT
* * * * * *
79911532 AGTGTAAGACATGTCTGGGAAATGCTTCAGCCATATTATGA-AAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACA-GA-GATAAGCC
* *
79911578 AGTGTAAGAACATGTCTGGGACATGGCATCGG-TACAGAAATAAGTGGC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCTACAGAGATAA--GCC
* *
79911626 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CT--ACAGAGATAAGCC
* * ** *
79911673 AGTGTAAGACTTGTCTGGGACATGCATCGGCTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATAAGCC
79911717 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
79911745 AGCACGCATG
Statistics
Matches: 138, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.04
44 30 0.22
45 1 0.01
46 20 0.14
47 59 0.43
48 15 0.11
49 1 0.01
50 7 0.05
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATAAGCC
Found at i:79911738 original size:91 final size:95
Alignment explanation
Indices: 79911574--79911796 Score: 237
Period size: 91 Copynumber: 2.4 Consensus size: 95
79911564 ATATTATGAA
79911574 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGTACAGAAATAAGTGGCAGAGTAAGACATG
1 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGTACAGAAATAAGTGGCAGAGTAAGACATG
*
79911639 TTTGGGACATGCATCGGCCTCGACAGAGAT
66 TCTGGGACATGCATCGGCCTCGACAGAGAT
* * * *
79911669 AGCCAGTGTAAG-ACTTGTCTGGGACAT-GCATCGGCTA-AG-AGT-TGT-GCTAGTGTAAGACA
1 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG-TACAGAAATAAGTGGC-AGAGTAAGACA
* * *
79911728 TGTCTGGGACATGCATCAG-CACG-CATGTATGAG
64 TGTCTGGGACATGCATCGGCCTCGACA-G-A-GAT
* * * *
79911761 AGCCAATGTTAGACCATGTCTGGTACATGGCATCGG
1 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG
79911797 CAATTTATCC
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
89 2 0.02
90 6 0.06
91 30 0.28
92 14 0.13
93 21 0.19
94 23 0.21
95 12 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGTACAGAAATAAGTGGCAGAGTAAGACATG
TCTGGGACATGCATCGGCCTCGACAGAGAT
Found at i:79913755 original size:39 final size:40
Alignment explanation
Indices: 79913632--79913875 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
79913622 CGGATGATAA
* *
79913632 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79913671 TCGGGCTAAG-CCCGAA-GCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79913709 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79913749 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79913788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
79913828 CCAGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
79913868 CC-GGCTAA
1 CCGGGCTAA
79913876 ATTCGAAGGT
Statistics
Matches: 189, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
37 17 0.09
38 17 0.09
39 61 0.32
40 94 0.50
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79913800 original size:79 final size:79
Alignment explanation
Indices: 79913632--79913875 Score: 372
Period size: 79 Copynumber: 3.1 Consensus size: 79
79913622 CGGATGATAA
* * * *
79913632 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCGGGCTAAG-CCCGAA-GCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGCTAAGTCCCGAAGGCATTTG
79913694 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
79913709 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTAAGTCCCGAAGGCATTTGT
79913774 GCGAGTTACTATAT
66 GCGAGTTACTATAT
79913788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC-GGCTAAGTCCCGAAGGCATTTG
* *
79913853 AGCAAG-TAGCTATAT
65 TGCGAGTTA-CTATAT
79913868 CC-GGCTAA
1 CCGGGCTAA
79913876 ATTCGAAGGT
Statistics
Matches: 156, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
77 43 0.28
78 7 0.04
79 72 0.46
80 34 0.22
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:79919479 original size:40 final size:40
Alignment explanation
Indices: 79919422--79919607 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
79919412 TCGAATGATG
* * * *
79919422 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
79919462 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
79919502 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
79919542 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTTCTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
79919583 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
79919608 AATGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79919625 original size:80 final size:80
Alignment explanation
Indices: 79919456--79919630 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 80
79919446 GTGCTAAGTG
**
79919456 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
**
79919521 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTT
* * * *
79919536 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTTCTATAA-CCGGGCTATG-TCTCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGATC-CG
*
79919598 AAGGCATTTGAATGAG-T
63 AAGGCATTTGAACGAGTT
79919615 AGCTATATCC-GGTTAA
1 A-CTATATCCGGGTTAA
79919631 ATTCTGAAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
79 11 0.14
80 68 0.84
81 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:79925236 original size:47 final size:45
Alignment explanation
Indices: 79925179--79925537 Score: 201
Period size: 47 Copynumber: 7.7 Consensus size: 45
79925169 AGAAATGAGT
*
79925179 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGA-AGAGATA
* * * * *
79925226 GCCAATGTAAGACGTGTCTGGGACACGCATCGGCT--AAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAAGAGAT-A
* ** * * *
79925270 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACGCATGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCG-AAG-A-GATA
* * * ** *
79925318 GCCACTGTAAGACTATGTCTAGGACATGGCCTCGATATAGAA-ATGA-A
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCG-GCTCGAAGA-GATA
* * * *
79925365 TGCCAGAGTAAGACACGTCTGGGACATGAATCAGCCTCGACAGAGATA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTCGA-AGAGATA
* * * * *
79925413 GCCAGTGTAAGACGTGTCTGGGATACGCATCGGCT--AAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAAGAGAT-A
* * * * *
79925457 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACTC-ATGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GCTCGAAG-A-GATA
79925505 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
79925538 AGCAATTTCT
Statistics
Matches: 232, Mismatches: 58, Indels: 41
0.70 0.18 0.12
Matches are distributed among these distances:
43 10 0.04
44 56 0.24
45 1 0.00
46 13 0.06
47 74 0.32
48 41 0.18
49 28 0.12
50 8 0.03
51 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAAGAGATA
Found at i:79925404 original size:187 final size:187
Alignment explanation
Indices: 79925085--79925537 Score: 714
Period size: 187 Copynumber: 2.4 Consensus size: 187
79925075 TGATTTGTGC
* * *
79925085 GCTAGTGTAAGACATGTCTGGGACATGC-TTCAGC-CATAT-TATGAAAGTCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATT-AGCACACATGTATGAGAGCCAGTGTAAGACCAT
* * * * *
79925147 GTCTAGGACATGGTATCGATATAGAAATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGG
65 GTCTAGGACATGGCATCGATATAGAAATGAATGCCAGAGTAAGACACGTCTGGGACATGAATCAG
79925212 CCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
130 CCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
* * *
79925270 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACGCATGTATGAGAGCCACTGTAAGACTATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
*
79925335 TCTAGGACATGGCCTCGATATAGAAATGAATGCCAGAGTAAGACACGTCTGGGACATGAATCAGC
66 TCTAGGACATGGCATCGATATAGAAATGAATGCCAGAGTAAGACACGTCTGGGACATGAATCAGC
* *
79925400 CTCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGATACGCATCGGCTAAGAGTTGT
131 CTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
* * *
79925457 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACTCATGTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
*
79925522 TCTGGGACATGGCATC
66 TCTAGGACATGGCATC
79925538 AGCAATTTCT
Statistics
Matches: 244, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
185 31 0.13
186 5 0.02
187 208 0.85
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (187 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
TCTAGGACATGGCATCGATATAGAAATGAATGCCAGAGTAAGACACGTCTGGGACATGAATCAGC
CTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
Found at i:79925476 original size:91 final size:91
Alignment explanation
Indices: 79925185--79925490 Score: 348
Period size: 91 Copynumber: 3.3 Consensus size: 91
79925175 GAGTGCCAGA
*
79925185 GTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
79925250 ACGCATCGGCTAAGAGTTGTGCTAGT
66 ACGCATCGGCTAAGAGTTGTGCTAGT
* * * * * *
79925276 GTAAGACATGTCTGGGACATGCATTAG-CACG-CATGTATGAGAGCCACTGTAAGACTATGTCTA
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACA-G-A-GATAGCCAATGTAAGAC-GTGTCTG
* * * ** * *
79925339 GGACATGGCCTC-GATATAGAAATGAATGCCAGA
62 GGACA-CGCATCGGCTA-AGAGTTG--TGCTAGT
* * * *
79925372 GTAAGACACGTCTGGGACATGAATCAGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGAT
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
79925437 ACGCATCGGCTAAGAGTTGTGCTAGT
66 ACGCATCGGCTAAGAGTTGTGCTAGT
*
79925463 GTAAGACATGTCTGGGACATGTATCAGC
1 GTAAGACATGTCTGGGACATGCATCAGC
79925491 ACTCATGTAT
Statistics
Matches: 172, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
89 2 0.01
90 4 0.02
91 57 0.33
92 15 0.09
93 22 0.13
94 21 0.12
95 15 0.09
96 30 0.17
97 4 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (91 bp):
GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
ACGCATCGGCTAAGAGTTGTGCTAGT
Found at i:79930877 original size:22 final size:24
Alignment explanation
Indices: 79930841--79930888 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
79930831 AATTCTATGC
79930841 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
79930863 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
79930887 TA
1 TA
79930889 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:79936397 original size:46 final size:48
Alignment explanation
Indices: 79936308--79936477 Score: 117
Period size: 46 Copynumber: 3.6 Consensus size: 48
79936298 ATTTGTGAGA
* *
79936308 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGT
1 GCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGACGAGT
* * *
79936356 GCTAGAGTAAGA-TATGTCT-GGAACAT-GCATCGGCCTCGAGACGTA-A
1 GCTAGAGTAAGACCATGTCTAGG-ACATGGCATCGGCATCGAGACG-AGT
* * *
79936402 GCCAGTGTAAGA-CATGTCT-GAGACATGTG--TCGGC-TACGAGATGA-T
1 GCTAGAGTAAGACCATGTCTAG-GACATG-GCATCGGCAT-CGAGACGAGT
* * *
79936447 AGTTAGTGTAAGACCATGTCTGGGACATGGC
1 -GCTAGAGTAAGACCATGTCTAGGACATGGC
79936478 TTCAACTTGA
Statistics
Matches: 100, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
45 2 0.02
46 60 0.60
47 25 0.25
48 13 0.13
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
GCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGACGAGT
Done.