Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 260 of 425
Found at i:79937721 original size:21 final size:22
Alignment explanation
Indices: 79937682--79937722 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
79937672 TTGGAACGGT
*
79937682 CACACGGGCGTGTTGCCCCTCC
1 CACACGAGCGTGTTGCCCCTCC
79937704 CACACGAGCGTG-TGCCCCT
1 CACACGAGCGTGTTGCCCCT
79937723 GTGACAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGAGCGTGTTGCCCCTCC
Found at i:79940304 original size:42 final size:43
Alignment explanation
Indices: 79940225--79940314 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 43
79940215 TTACATGGGG
* * * *
79940225 TCTCATATCGATGCCAATAGCCCAACTATGGTCTTACACAAAA
1 TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
**
79940268 TCTCAGATCGATGCC-ATAACCCAAATATAGTCTTACACGTAA
1 TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
79940310 TCTCA
1 TCTCA
79940315 ACTAACCCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 27 0.66
43 14 0.34
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (43 bp):
TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
Found at i:79942172 original size:27 final size:27
Alignment explanation
Indices: 79942142--79942355 Score: 331
Period size: 27 Copynumber: 7.9 Consensus size: 27
79942132 ATTACCAAAG
*
79942142 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
79942169 TACCCTCGATTTATAGAGCTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
79942196 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
79942223 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
** *
79942250 TACTTTCGATTTACAGAA-TACCCATTT
1 TACCCTCGATTTATAGAATTA-CCATTT
* * *
79942277 TACCCTCGATTTACAGAACTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
79942304 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
79942331 TACCCTCGATTTATAGAATTACCAT
1 TACCCTCGATTTATAGAATTACCAT
79942356 ACAAAATTAC
Statistics
Matches: 171, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
26 2 0.01
27 167 0.98
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:79942398 original size:27 final size:27
Alignment explanation
Indices: 79942358--79942535 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
79942348 ATTACCATAC
** * *
79942358 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTAT
* * *
79942385 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTA-T
*
79942412 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
* *
79942439 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
* * *
79942466 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
** *
79942493 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
* *
79942520 GAAATTATCAAAATAC
1 AAAATTACCAAAATAC
79942536 TCTCGATTTG
Statistics
Matches: 130, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.05
27 118 0.91
28 6 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTAT
Found at i:79942426 original size:54 final size:54
Alignment explanation
Indices: 79942358--79942647 Score: 227
Period size: 54 Copynumber: 5.4 Consensus size: 54
79942348 ATTACCATAC
** * **
79942358 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GATCAGT
* * **
79942412 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
* * * **
79942466 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
* * * * * *
79942520 GAAATTATCAAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTG-T-AGGGT
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTGATCA--GT
* ** *
79942573 AGAATTACCAAAATACCCCT-GTAGGGTAAAATTACCGAAATACCCCT-AT-AGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGATCA--GT
* *
79942627 AGAATTACTAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
79942648 TAGGGTAGAA
Statistics
Matches: 194, Mismatches: 33, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
52 2 0.01
53 36 0.19
54 152 0.78
55 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
Found at i:79942462 original size:81 final size:81
Alignment explanation
Indices: 79942358--79942535 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 81
79942348 ATTACCATAC
* * *
79942358 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC-AGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCC-CGAGCTAGTAAAATTACCA
**
79942422 AAATACCCCTGGTTTGT
65 AAATACCCCTAATTTGT
** * *
79942439 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGCTAGTAAAATTACCAA
79942504 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
*
79942520 GAAATTA-TCAAAATAC
1 AAAATTACT-AAAATAC
79942536 TCTCGATTTG
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 4 0.05
81 81 0.95
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGCTAGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:79942546 original size:81 final size:80
Alignment explanation
Indices: 79942358--79942649 Score: 229
Period size: 81 Copynumber: 3.6 Consensus size: 80
79942348 ATTACCATAC
* * * ** *
79942358 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-G-TAAGTAAAATTACCA
**
79942422 AAATACCCCTGGTTTGT
64 AAATACCCCTAATTTGT
* *
79942439 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-G-TAAGTAAAATTACCA
79942503 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* * * * * *
79942520 GAAATTA-TCAAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTGTAGGGTAGAATTACC
1 AAAATTACT-AAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCTGTA-AGTAAAATTACC
* **
79942582 AAAATACCCCT-GTAGGGT
63 AAAATACCCCTAAT-TTGT
** ** * *
79942600 AAAATTACCGAAATACCCCT-ATAGGGTAGAATTACTAAAATACCCCTGTA
1 AAAATTACTAAAATACCCCTGAT-TTGTAAAATTACCAAAATACCCCTGTA
79942650 GGGTAGAATT
Statistics
Matches: 172, Mismatches: 29, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
78 1 0.01
79 4 0.02
80 56 0.33
81 105 0.61
82 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGTAAGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:79942633 original size:107 final size:107
Alignment explanation
Indices: 79942468--79942724 Score: 251
Period size: 107 Copynumber: 2.4 Consensus size: 107
79942458 TGGTTTGTAA
* * **
79942468 AATTACCAAAATACCCC--TAGCTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTA-TCA
1 AATTACCAAAATACCCCTGTAG--GGTAAAATTACCGAAATACCCCTAATGGGTGAAATTACT-A
* **
79942530 AAATA-CTCTCG-ATTTGTA-AAATATCGAAATACCCCTGTAGGGTAG
63 AAATACCCCT-GTA-GGGTAGAAATATCGAAAT-CCCCTGTAGGGTAG
79942575 AATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCT-ATAGGGT-AGAATTACTAA
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTAAT-GGGTGA-AATTACTAA
* *
79942638 AATACCCCTGTAGGGTAGAATTATCGAAATCCCTTGTAGGGTAG
64 AATACCCCTGTAGGGTAGAAATATCGAAATCCCCTGTAGGGTAG
* * * * * *
79942682 AAATACCGAAATACCCTTGTAGGGTAGAATTACGGAGATACCC
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCC
79942725 TTACGAGGTA
Statistics
Matches: 127, Mismatches: 15, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
106 3 0.02
107 105 0.83
108 16 0.13
109 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (107 bp):
AATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTAATGGGTGAAATTACTAAAA
TACCCCTGTAGGGTAGAAATATCGAAATCCCCTGTAGGGTAG
Found at i:79942693 original size:80 final size:81
Alignment explanation
Indices: 79942556--79942714 Score: 250
Period size: 80 Copynumber: 2.0 Consensus size: 81
79942546 TAAAATATCG
79942556 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
79942621 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACTA
* * * *
79942637 AAATACCCCTGTAGGGTAGAATTATCGAAAT-CCCTTGTAGGGTAGAAA-TACCGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCCT
*
79942700 GTAGGGTAGAATTAC
65 ATAGGGTAGAATTAC
79942715 GGAGATACCC
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 40 0.56
81 32 0.44
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
TAGGGTAGAATTACTA
Found at i:79942726 original size:27 final size:27
Alignment explanation
Indices: 79942554--79942724 Score: 236
Period size: 27 Copynumber: 6.4 Consensus size: 27
79942544 TGTAAAATAT
79942554 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
79942581 CAAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
79942608 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
79942635 TAAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
79942662 CGAAAT-CCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
79942688 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
79942715 GGAGATACCC
1 CGAAATACCC
79942725 TTACGAGGTA
Statistics
Matches: 126, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.18
27 103 0.82
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:79942740 original size:80 final size:81
Alignment explanation
Indices: 79942556--79942740 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 81
79942546 TAAAATATCG
* * *
79942556 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
*
79942621 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACGA
* * *
79942637 AAATACCCCTGTAGGGTAGAATTATCGAAAT-CCCTTGTAGGGTAGAAA-TACCGAAATACCCTT
1 AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCCT
* *
79942700 GTAGGGTAGAATTACGG
65 ATAGGGTAGAATTACGA
*
79942717 AGATA-CCCT-TACGAGGTAAAATTA
1 AAATACCCCTGTA-G-GGTAAAATTA
79942741 CCATTTTGCC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 5 0.05
80 53 0.58
81 32 0.35
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTA
TAGGGTAGAATTACGA
Found at i:79942981 original size:25 final size:25
Alignment explanation
Indices: 79942947--79943041 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
79942937 AGGAAGTGCT
79942947 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
79942972 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
79942997 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
79943022 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
79943042 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:79943054 original size:24 final size:25
Alignment explanation
Indices: 79942947--79943054 Score: 118
Period size: 25 Copynumber: 4.4 Consensus size: 25
79942937 AGGAAGTGCT
*
79942947 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
79942971 GAAAAG-GGCTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
79942996 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
79943021 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
79943045 AAAAGAGGCT
1 AAAAGAGGCT
79943055 AGGCCTCCAA
Statistics
Matches: 77, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
24 16 0.21
25 61 0.79
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:79946045 original size:38 final size:38
Alignment explanation
Indices: 79946003--79946076 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
79945993 GATCTGATCT
*
79946003 AAAAAGAAG-AAATAAAGAAATTT-AGTAATAAAGAAATC
1 AAAAA-AAGTAAACAAAGAAATTTGAG-AATAAAGAAATC
* *
79946041 AAAAATAGTAAACAAAGAAATTTGAGAATAATGAAA
1 AAAAAAAGTAAACAAAGAAATTTGAGAATAAAGAAA
79946077 AAATAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 2 0.06
38 27 0.87
39 2 0.06
ACGTcount: A:0.65, C:0.03, G:0.14, T:0.19
Consensus pattern (38 bp):
AAAAAAAGTAAACAAAGAAATTTGAGAATAAAGAAATC
Found at i:79947743 original size:57 final size:57
Alignment explanation
Indices: 79947674--79947787 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
79947664 TTCTTACTTA
79947674 GACACCAAGCCACCCCATTTTCAACCAAAATGACCTATTCAGAAACACCTTTAACAC
1 GACACCAAGCCACCCCATTTTCAACCAAAATGACCTATTCAGAAACACCTTTAACAC
79947731 GACACCAAGCCACCCCATTTTCAACCAAAATGACCTATTCAGAAACACCTTTAACAC
1 GACACCAAGCCACCCCATTTTCAACCAAAATGACCTATTCAGAAACACCTTTAACAC
79947788 AACTAAAACA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.39, C:0.35, G:0.07, T:0.19
Consensus pattern (57 bp):
GACACCAAGCCACCCCATTTTCAACCAAAATGACCTATTCAGAAACACCTTTAACAC
Found at i:79967659 original size:15 final size:15
Alignment explanation
Indices: 79967639--79967668 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79967629 CAACACTTGT
79967639 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
79967654 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
79967669 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:79974234 original size:16 final size:16
Alignment explanation
Indices: 79974213--79974244 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79974203 TTCCAAAAAC
79974213 ATATAATCACAACATT
1 ATATAATCACAACATT
79974229 ATATAATCACAACATT
1 ATATAATCACAACATT
79974245 CACCAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (16 bp):
ATATAATCACAACATT
Found at i:79974586 original size:27 final size:27
Alignment explanation
Indices: 79974537--79974591 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
79974527 ACCATAGAAC
**
79974537 TTATCCAAAATTCAATATTATTCAATA
1 TTATCCAAAATTCAATAGAATTCAATA
*
79974564 TTATCCAAAATTCACA-AGAATTCCATA
1 TTATCCAAAATTCA-ATAGAATTCAATA
79974591 T
1 T
79974592 AAATTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (27 bp):
TTATCCAAAATTCAATAGAATTCAATA
Found at i:79978755 original size:20 final size:20
Alignment explanation
Indices: 79978726--79978770 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79978716 TGCACATGTA
* *
79978726 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
79978746 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
79978766 TTCAT
1 TTCAT
79978771 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:79982259 original size:79 final size:82
Alignment explanation
Indices: 79982119--79982303 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
79982109 TCGAATGATG
* * *
79982119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
79982183 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
79982199 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
79982261 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
79982279 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79982304 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:79982311 original size:40 final size:40
Alignment explanation
Indices: 79982120--79982311 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
79982110 CGAATGATGT
* * * * *
79982120 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
79982160 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
79982200 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
79982239 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
79982279 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
79982312 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:79982334 original size:79 final size:79
Alignment explanation
Indices: 79982119--79982336 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
79982109 TCGAATGATG
* * * * ** *
79982119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
79982182 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
79982199 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
79982264 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
79982279 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
79982337 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:79985731 original size:40 final size:40
Alignment explanation
Indices: 79985593--79985779 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
79985583 TTCGAATGAT
* * * *
79985593 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACCAA
* * *
79985634 ATCCGAGTTAAGTCTCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAA
*
79985674 AT-CGGGTTAATTCCCGAAGGCATTTGTGCAAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAA
* * *
79985713 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCA-A
* *
79985754 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
79985780 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
39 35 0.28
40 64 0.50
41 28 0.22
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAA
Found at i:79985737 original size:79 final size:81
Alignment explanation
Indices: 79985595--79985779 Score: 250
Period size: 80 Copynumber: 2.3 Consensus size: 81
79985585 CGAATGATAT
* * * *
79985595 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTTAAGTCTCGAAGGCATTT
1 CCGGGCTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAGTTAAGTCCCGAAGGCATTT
*
79985660 GTGCGAGTTACCA-AA
66 GTGCGAGTCACCATAA
* * * *
79985675 TCGGGTTAATTCCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAGTTAAGTCCCGAAGGCATTT
*
79985739 GTGCGAGTCACTATAA
66 GTGCGAGTCACCATAA
79985755 CCGGGCT-ATGTCCCGAAGGCATTTG
1 CCGGGCTAAT-TCCCGAAGGCATTTG
79985780 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 45 0.49
80 46 0.51
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
CCGGGCTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAGTTAAGTCCCGAAGGCATTT
GTGCGAGTCACCATAA
Found at i:79985810 original size:79 final size:79
Alignment explanation
Indices: 79985595--79985812 Score: 199
Period size: 79 Copynumber: 2.7 Consensus size: 79
79985585 CGAATGATAT
* * ** * * * * *
79985595 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTTAAGTCTCGAAGGCATTT
1 CCGGGCTAATTCCCGAAGGCATTTGAAC-AAGTTACCAAATCCGGGTTAAATCCCGAAGGCATTT
*
79985660 GTGCGAGTTACCAAA
65 GTGCGAGTCACCAAA
* * ** *
79985675 TCGGGTTAATTCCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAATTCCCGAAGGCATTTGAACAAGTTACCAAATCCGGGTTAAATCCCGAAGGCATTTG
*
79985740 TGCGAGTCACTATAA
66 TGCGAGTCACCA-AA
* * * *
79985755 CCGGGCT-ATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAT-TCCCGAAGGCATTTGAACAAGTTA-CCAAATCCGGGTTAAATCCCGAAGG
79985813 TACGTGATTC
Statistics
Matches: 116, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 61 0.53
80 55 0.47
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTTGAACAAGTTACCAAATCCGGGTTAAATCCCGAAGGCATTTG
TGCGAGTCACCAAA
Found at i:79992174 original size:28 final size:28
Alignment explanation
Indices: 79992128--79992196 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
79992118 TTTAAAACCC
*
79992128 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79992155 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79992183 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
79992197 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:79993847 original size:20 final size:20
Alignment explanation
Indices: 79993824--79993861 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79993814 CACATCCAAA
*
79993824 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
79993844 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
79993862 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:80003346 original size:40 final size:39
Alignment explanation
Indices: 80003181--80003364 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80003171 AAATTGAATG
* * *
80003181 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80003221 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80003261 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80003301 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80003340 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80003365 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80003389 original size:80 final size:81
Alignment explanation
Indices: 80003221--80003409 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80003211 GCTGGAAATT
* * * *
80003221 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80003286 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80003302 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80003365 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80003381 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80003410 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80024607 original size:48 final size:48
Alignment explanation
Indices: 80024543--80024670 Score: 193
Period size: 48 Copynumber: 2.7 Consensus size: 48
80024533 CAAGGTAAAT
* * *
80024543 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
80024591 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
80024639 AGATGTATATTTGGTAAAGCCGAATGGCTAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAT
80024671 GTGCAATACG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:80024694 original size:48 final size:47
Alignment explanation
Indices: 80024554--80024697 Score: 182
Period size: 48 Copynumber: 3.0 Consensus size: 47
80024544 TATATATGTG
* * *
80024554 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
*
80024602 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * *
80024650 TGGTAAAGCCGAATGGCTAATGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
80024698 GTGGCCGAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
48 82 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:80024872 original size:37 final size:37
Alignment explanation
Indices: 80024830--80024907 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
80024820 AATATATTCT
* * *
80024830 GGGTAAGACTCGATGACTACGTGTGGAGATTCTGTCC
1 GGGTAAGACCCGATGACCACGTGTGGAGATTCTATCC
*
80024867 GGGTAAGACCCGATGACCACGTGTGGAGATTTTATCC
1 GGGTAAGACCCGATGACCACGTGTGGAGATTCTATCC
80024904 GGGT
1 GGGT
80024908 TAAAACCCCG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACCACGTGTGGAGATTCTATCC
Found at i:80030331 original size:27 final size:27
Alignment explanation
Indices: 80030292--80030362 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
80030282 TTAGAATACT
*
80030292 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCGAAATACCC
* *
80030320 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACCGAAATACCC
*
80030347 -TCGATTTGTAAAATTA
1 TTAG-TTTGTAAAATTA
80030363 TCGTTTTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.05
27 28 0.76
28 7 0.19
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCGAAATACCC
Found at i:80030372 original size:27 final size:27
Alignment explanation
Indices: 80030342--80030608 Score: 232
Period size: 27 Copynumber: 9.9 Consensus size: 27
80030332 AATACTGAAA
* *
80030342 TACCCTCGATTTGTAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
80030369 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * **
80030396 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
*
80030423 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * * *
80030450 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTATAAAATTACCGTTT
* * * * * *
80030477 TACCCCCAATTTACATAATTATCGTCT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
80030504 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
80030531 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
80030558 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * * *
80030585 TACCCTTGGTTTGTGAAATTACCG
1 TACCCTCGATTTATAAAATTACCG
80030609 CAATACCCTC
Statistics
Matches: 205, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 201 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:80030443 original size:81 final size:81
Alignment explanation
Indices: 80030342--80030590 Score: 333
Period size: 81 Copynumber: 3.1 Consensus size: 81
80030332 AATACTGAAA
* * * *
80030342 TACCCTCGATTTGTAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTT
*
80030407 TACAGAATTACTATTT
66 TACAGAATTACTGTTT
* * * *
80030423 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCCCCAAT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCATTTTACCCTCAGT
* *
80030487 TTACATAATTA-TCGTCT
65 TTACAGAATTACT-GTTT
*
80030504 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG-T
*
80030568 TTATAGAATTACTGTTT
65 TTACAGAATTACTGTTT
80030585 TACCCT
1 TACCCT
80030591 TGGTTTGTGA
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.01
81 140 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTT
TACAGAATTACTGTTT
Found at i:80030607 original size:54 final size:54
Alignment explanation
Indices: 80030342--80030590 Score: 286
Period size: 54 Copynumber: 4.6 Consensus size: 54
80030332 AATACTGAAA
** * * *
80030342 TACCCTCGATTTGTAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
** * *
80030396 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
* * * * * * * * *
80030450 TACCC-CTAATTTACATAATTACCATTTTACCCCCAATTTACATAATTATCGTCT
1 TACCCTC-GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
80030504 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
* *
80030558 TACCCTCGATTTATAGAATTACTGTTTTACCCT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCT
80030591 TGGTTTGTGA
Statistics
Matches: 165, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.01
54 161 0.98
55 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:80031969 original size:20 final size:20
Alignment explanation
Indices: 80031909--80031969 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
80031899 ATAAATATGG
*
80031909 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
80031929 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
80031949 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
80031969 T
1 T
80031970 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:80032046 original size:24 final size:24
Alignment explanation
Indices: 80032019--80032185 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
80032009 GAGGAAGTGA
*
80032019 AAAAAGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
80032043 AAAAGGGCTTATGCCCCAGTTTTC
1 AAAAGGGCTTATGCCCCAGTTATC
80032067 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
80032091 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
80032114 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
80032138 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
80032162 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80032186 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
23 21 0.16
24 97 0.75
25 11 0.09
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:80032414 original size:31 final size:31
Alignment explanation
Indices: 80032379--80032442 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80032369 CGTTTACAGT
*
80032379 AAAGGCTTCGGCCCAGTAATATAAAATATGA
1 AAAGGCTTCGGCCCAATAATATAAAATATGA
* *
80032410 AAAGGCTTCGGCCCAATATTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATAAAATATGA
80032441 AA
1 AA
80032443 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATAAAATATGA
Found at i:80040661 original size:5 final size:5
Alignment explanation
Indices: 80040648--80040685 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
80040638 TTGTATGTTC
* *
80040648 TTTAT TTTAC TTTAC TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80040686 TTTACAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:80042882 original size:40 final size:40
Alignment explanation
Indices: 80042724--80042868 Score: 213
Period size: 40 Copynumber: 3.6 Consensus size: 40
80042714 ATGTCCGAGC
* ** * *
80042724 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTCCCAAATCCGGGT
80042764 TAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
80042804 TAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
80042844 TAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAG
80042869 CTATTATAAC
Statistics
Matches: 97, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
39 1 0.01
40 88 0.91
41 8 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
Found at i:80042882 original size:80 final size:79
Alignment explanation
Indices: 80042717--80042908 Score: 201
Period size: 80 Copynumber: 2.4 Consensus size: 79
80042707 TCGAATGATG
* * *
80042717 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGGCTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGTGACCAAATCCGGGCTAAGATCCGAAGGCATTT
* *
80042782 GTGCGAGTTCCCAAA
65 GTGCGAGCTACCAAA
* ** *
80042797 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTGACCAAATCCGGGCTAAGAT-CCGAAGGCATT
**
80042861 TGTGCGAGCTATTATAA
64 TGTGCGAGCTACCA-AA
* *
80042878 -CCGGGCTATGT-CCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGT
80042909 CGCTATATCC
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 19 0.20
80 66 0.70
81 9 0.10
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTGACCAAATCCGGGCTAAGATCCGAAGGCATTTG
TGCGAGCTACCAAA
Found at i:80050906 original size:44 final size:45
Alignment explanation
Indices: 80050857--80050996 Score: 151
Period size: 45 Copynumber: 3.1 Consensus size: 45
80050847 ACAGAGTTCA
80050857 CATGTATGAATCTGCCATATCTATGATCATT-TTCTATGAATTCG
1 CATGTATGAATCTGCCATATCTATGATCATTCTTCTATGAATTCG
* * *
80050901 CATGTATGAATCTACCATATCTATGAAT-ATTCTTCTATGATTTTG
1 CATGTATGAATCTGCCATATCTATG-ATCATTCTTCTATGAATTCG
* * ** * * *
80050946 TATATATGAATCTGTGATATCTAT-AACTATTCTTTTATGAATCCG
1 CATGTATGAATCTGCCATATCTATGATC-ATTCTTCTATGAATTCG
80050991 CATGTA
1 CATGTA
80050997 GGAGCCTGGC
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 27 0.35
45 49 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (45 bp):
CATGTATGAATCTGCCATATCTATGATCATTCTTCTATGAATTCG
Found at i:80059824 original size:36 final size:36
Alignment explanation
Indices: 80059784--80059888 Score: 210
Period size: 36 Copynumber: 2.9 Consensus size: 36
80059774 GCAAGTTTGC
80059784 ATTCGGTCATGGCTTGTTAAATGTTGTTATTATTAT
1 ATTCGGTCATGGCTTGTTAAATGTTGTTATTATTAT
80059820 ATTCGGTCATGGCTTGTTAAATGTTGTTATTATTAT
1 ATTCGGTCATGGCTTGTTAAATGTTGTTATTATTAT
80059856 ATTCGGTCATGGCTTGTTAAATGTTGTTATTAT
1 ATTCGGTCATGGCTTGTTAAATGTTGTTATTAT
80059889 ATAATATGCA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 69 1.00
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.50
Consensus pattern (36 bp):
ATTCGGTCATGGCTTGTTAAATGTTGTTATTATTAT
Found at i:80062184 original size:46 final size:46
Alignment explanation
Indices: 80062080--80062204 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 46
80062070 GGTCATTTGT
*
80062080 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGAC
* * * * *
80062128 GAGTGCTAGTGTAAGACATTTCTGAGACATGCATTGGCCTCGAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAC
80062174 GTA-AGCTAGTGTAAGAC-TGTCTGGGACATGC
1 G-AGAGCTAGTGTAAGACATGTCTGGGACATGC
80062205 GTGGCTACGA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
45 12 0.18
46 27 0.40
47 13 0.19
48 15 0.22
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAC
Found at i:80066475 original size:42 final size:42
Alignment explanation
Indices: 80066411--80066495 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
80066401 TAATCAGCTA
* *
80066411 AATTTTGATTTGGGTCAGCATATGGACGGTTCTGGGCTGCCC
1 AATTCTGATTTGGGTCAGCATATGGACGGTTCTGGGCTACCC
80066453 AATTCTGATTTGGGTCAGCATATGGACGGTTCTGGGCTACCC
1 AATTCTGATTTGGGTCAGCATATGGACGGTTCTGGGCTACCC
80066495 A
1 A
80066496 TTTATTTAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (42 bp):
AATTCTGATTTGGGTCAGCATATGGACGGTTCTGGGCTACCC
Found at i:80077757 original size:142 final size:143
Alignment explanation
Indices: 80077496--80077792 Score: 569
Period size: 142 Copynumber: 2.1 Consensus size: 143
80077486 GTGAGTTAAA
* *
80077496 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCACGGAGA
80077561 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
80077626 TGTGTGCATGAGT
131 TGTGTGCATGAGT
80077639 ATTC-GCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCACGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCACGGAGA
80077703 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
80077768 TGTGTGCATGAGT
131 TGTGTGCATGAGT
80077781 ATTCGGCCATGC
1 ATTCGGCCATGC
80077793 TATAGAATTT
Statistics
Matches: 151, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
142 140 0.93
143 11 0.07
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.39
Consensus pattern (143 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCACGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGTGCATGAGT
Found at i:80078467 original size:29 final size:29
Alignment explanation
Indices: 80078434--80078565 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
80078424 GTGACGAGAT
*
80078434 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
80078463 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
80078492 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
80078521 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
80078550 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
80078566 AGCTCGAGGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:80084582 original size:40 final size:39
Alignment explanation
Indices: 80084417--80084600 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80084407 AAATTGAATG
* * *
80084417 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80084457 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80084497 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80084537 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80084576 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80084601 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80084625 original size:80 final size:81
Alignment explanation
Indices: 80084457--80084645 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80084447 GCTGGAAATT
* * * *
80084457 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80084522 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80084538 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80084601 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80084617 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80084646 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80098460 original size:80 final size:80
Alignment explanation
Indices: 80098376--80098524 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80098366 TATGGTAACC
* * * *
80098376 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80098440 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80098456 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80098521 CCGG
66 CCGG
80098525 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80098466 original size:40 final size:38
Alignment explanation
Indices: 80098417--80098524 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80098407 ATCACGATTT
*
80098417 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80098457 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80098497 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80098525 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80101554 original size:6 final size:6
Alignment explanation
Indices: 80101543--80101569 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
80101533 TTGCCTTACC
80101543 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
80101570 GTAGCTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:80109495 original size:47 final size:47
Alignment explanation
Indices: 80109442--80109550 Score: 112
Period size: 49 Copynumber: 2.3 Consensus size: 47
80109432 CAAACATGGT
* *
80109442 CTTACACTGGCTCACACATCTAAGTC-GATGTCATGCCCCAGACAGGC
1 CTTACACTGGCTCACACATC-AAGGCTGATGCCATGCCCCAGACAGGC
* * * * * *
80109489 CTTACACTGACTTTCATATATCGAGGCTGATGCCATGTCCCAGACAGGT
1 CTTACACTGGC--TCACACATCAAGGCTGATGCCATGCCCCAGACAGGC
80109538 CTTACACTGGCTC
1 CTTACACTGGCTC
80109551 TCATTGTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
47 12 0.24
48 3 0.06
49 35 0.70
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
CTTACACTGGCTCACACATCAAGGCTGATGCCATGCCCCAGACAGGC
Found at i:80110875 original size:46 final size:46
Alignment explanation
Indices: 80110825--80110940 Score: 146
Period size: 46 Copynumber: 2.5 Consensus size: 46
80110815 GACAAGTGCT
*
80110825 GTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAGACG-TAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGAT-AGCCA
* * *
80110871 GTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGATAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCCA
*
80110917 ATGTAAGACCATGTCTGGGACATG
1 GTGTAAGA-CATGTCTGGGACATG
80110941 GCTTTGACTT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
45 2 0.03
46 44 0.71
47 16 0.26
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCCA
Found at i:80110969 original size:47 final size:47
Alignment explanation
Indices: 80110825--80110971 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 47
80110815 GACAAGTGCT
* * * *
80110825 GTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAGACG-TAAGCCA
1 GTGTAAGACATGTCTGGGACATGCGTC-GACTACGAGATGATAAGCCA
* *
80110871 GTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGAT-AGTCA
1 GTGTAAGACATGTCTGGGACATGCGTCGACTACGAGATGATAAGCCA
* * * *
80110917 ATGTAAGACCATGTCTGGGACATGGCTTTGACT-TGAGAT-ATAAGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCGTCGACTACGAGATGATAAGCCA
80110964 GTGTAAGA
1 GTGTAAGA
80110972 TAGTATCTGG
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.04
46 44 0.52
47 31 0.37
48 6 0.07
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GTGTAAGACATGTCTGGGACATGCGTCGACTACGAGATGATAAGCCA
Found at i:80112442 original size:48 final size:48
Alignment explanation
Indices: 80112325--80112639 Score: 235
Period size: 48 Copynumber: 6.7 Consensus size: 48
80112315 CTATCGGTGT
* * * * * *
80112325 CGATGCCATGTCCTAGACAGGTCTTACACT-G--ACACATGTC-AAGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATATCTCGAGGC
*
80112369 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTT-CATATCTCGAGGC
* * * ** *
80112418 CGATG-CATGTTCCATACATGTCTTACACTAGC-TC-TCGTCTTAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTTCAT-ATCTCGAGGC
* * *
80112464 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTTGTATATATCGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTT-CATATCTCGAGGC
* * * ** *
80112514 TGATG-CATGTCCCACACATGTCTTACACTAGC-TC-TCGTCTTAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTTCAT-ATCTCGAGGC
* * *
80112560 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TCATATCTCGAGGC
80112608 CGATG-CATGTCCCTA-ACATGTCTTACACTAGC
1 CGATGCCATGTCCC-AGACATGTCTTACACTAGC
80112640 ACACATCCAT
Statistics
Matches: 216, Mismatches: 37, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.13
45 3 0.01
46 33 0.15
47 39 0.18
48 76 0.35
49 23 0.11
50 11 0.05
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATATCTCGAGGC
Found at i:80112511 original size:96 final size:96
Alignment explanation
Indices: 80112367--80112639 Score: 412
Period size: 96 Copynumber: 2.9 Consensus size: 96
80112357 CACATGTCAA
*
80112367 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCCGATGCATGTTCC
80112431 ATACATGTCTTACACTAGCTCTCGTCTTAAT
66 ATACATGTCTTACACTAGCTCTCGTCTTAAT
* * * *
80112462 GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTGTATATATCGAGGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCCGATGCATGTTCC
*
80112527 ACACATGTCTTACACTAGCTCTCGTCTTAAT
66 ATACATGTCTTACACTAGCTCTCGTCTTAAT
* *
80112558 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATA-AT-GTGGCCGATGCATG-TC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TGCATATATCGAGGCCGATGCATGTTC
*
80112619 CCTAACATGTCTTACACTAGC
65 CAT-ACATGTCTTACACTAGC
80112640 ACACATCCAT
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
93 2 0.01
94 29 0.18
95 22 0.14
96 107 0.66
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCCGATGCATGTTCC
ATACATGTCTTACACTAGCTCTCGTCTTAAT
Found at i:80115146 original size:51 final size:51
Alignment explanation
Indices: 80115074--80115199 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 51
80115064 CAATCAAATC
* * * *
80115074 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
80115125 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
80115176 TCTAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
80115200 TCAAGATCAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:80120274 original size:51 final size:51
Alignment explanation
Indices: 80120199--80120327 Score: 177
Period size: 51 Copynumber: 2.5 Consensus size: 51
80120189 TTACAATCAA
* * * *
80120199 ATATCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAG
1 ATATCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAG
* ** *
80120250 ATATGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAG
1 ATATCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAG
*
80120301 ATCTCTAAGATTATAAAATCATATCTT
1 ATATCTAAGATTATAAAATCATATCTT
80120328 TCAAGATCAT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.43, C:0.13, G:0.05, T:0.39
Consensus pattern (51 bp):
ATATCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAG
Found at i:80130025 original size:21 final size:21
Alignment explanation
Indices: 80130001--80130070 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
80129991 CATCATGAAC
80130001 TCAGACCATAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
*
80130022 TCAGATGCCACATATA-TC-ATGAGC
1 TCAGA---C-CATA-ACTCAATGAGT
*
80130046 TCAGACCACAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
80130067 TCAG
1 TCAG
80130071 GTTACATAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.13
21 15 0.38
24 11 0.28
25 6 0.15
26 1 0.03
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (21 bp):
TCAGACCATAACTCAATGAGT
Found at i:80138267 original size:75 final size:79
Alignment explanation
Indices: 80138136--80138314 Score: 219
Period size: 75 Copynumber: 2.3 Consensus size: 79
80138126 CGAATGATGT
*
80138136 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
80138200 GT-GAGTTACTA-AA
65 GTCGAGTTACTATAA
* * **
80138213 TCC-GG-TAAGTCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
80138274 TGTGCGAGTTACTATAA
64 TGT-CGAGTTACTATAA
*
80138291 CCGGGCTATGTCCGAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTTG
80138315 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
74 1 0.01
75 39 0.44
76 12 0.14
77 13 0.15
78 6 0.07
79 17 0.19
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TCGAGTTACTATAA
Found at i:80138321 original size:39 final size:39
Alignment explanation
Indices: 80138135--80138314 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
80138125 TCGAATGATG
* * *
80138135 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
80138175 TCCGGACTAAGATCCGAAGGCATTTGT--GAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
80138213 TCC-GG-TAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
80138250 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
80138291 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
80138315 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
35 15 0.12
36 4 0.03
37 15 0.12
38 13 0.10
39 18 0.14
40 52 0.42
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80138332 original size:79 final size:75
Alignment explanation
Indices: 80138169--80138347 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 75
80138159 GTGCTAAGTG
**
80138169 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGAGTTACTAAATCCGGTAAGTCCGAAGGCATT
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGAGTTACTAAATCCGGTAAGTCCGAAGGCATT
**
80138234 TGTGCGAGTT
66 TGAACGAGTT
* *
80138244 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCGAA
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGT--GAGTTACTA-AATCC-GG-TAAGTCCGAA
80138307 GGCATTTGAACGAG-T
60 GGCATTTGAACGAGTT
80138322 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
80138348 TACGTGATTC
Statistics
Matches: 88, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
74 1 0.01
75 28 0.32
77 11 0.12
78 19 0.22
79 29 0.33
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (75 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGAGTTACTAAATCCGGTAAGTCCGAAGGCATT
TGAACGAGTT
Found at i:80146075 original size:40 final size:40
Alignment explanation
Indices: 80145886--80146061 Score: 214
Period size: 40 Copynumber: 4.4 Consensus size: 40
80145876 TTCGGGCTAT
* * * ***
80145886 GTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGAACTAA
1 GTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAA
80145926 GAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA
1 G-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA
80145966 GTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA
1 GTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA
* * *
80146006 GTCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTAT
1 GTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAA
*
80146046 GTCTCGAAGGCATTTG
1 GTCCCGAAGGCATTTG
80146062 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 111 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
GTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA
Found at i:80147800 original size:51 final size:51
Alignment explanation
Indices: 80147689--80147800 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
80147679 CTACCTCATA
* * **
80147689 ACATGTAT-ACATCCATAATGAACTCAGACCACTCAATGAGCTCAGATGTT
1 ACATATATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGCC
* * *
80147739 ATATGA-ATCACATCCATTATGAACTCAGACCTCTCAACGAGCTCAGATGCC
1 ACAT-ATATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGCC
80147790 ACATATATCAC
1 ACATATATCAC
80147801 GAAGTTGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
50 6 0.12
51 45 0.88
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (51 bp):
ACATATATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGCC
Found at i:80147818 original size:42 final size:43
Alignment explanation
Indices: 80147766--80147846 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 43
80147756 TATGAACTCA
* *
80147766 GACCTCTCAACGAGCTCAGATGC-CACATATATCACGAAGTTG
1 GACCACTCAACAAGCTCAGATGCTCACATATATCACGAAGTTG
* * *
80147808 GACCACTCAACAAGTTCGGATTCTCACATATATCACGAA
1 GACCACTCAACAAGCTCAGATGCTCACATATATCACGAA
80147847 CTCGAACCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 18 0.55
43 15 0.45
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
GACCACTCAACAAGCTCAGATGCTCACATATATCACGAAGTTG
Found at i:80147860 original size:43 final size:43
Alignment explanation
Indices: 80147771--80147872 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
80147761 ACTCAGACCT
* * * * * *
80147771 CTCAACGAGCTCAGATGC-CACATATATCACGAAGTTGGACCA
1 CTCAACAAGCTCGGATTCTCACATATATCACGAACTCGAACCA
* *
80147813 CTCAACAAGTTCGGATTCTCACATATATCACGAACTCGAACCG
1 CTCAACAAGCTCGGATTCTCACATATATCACGAACTCGAACCA
*
80147856 CTCAACTAGCTCGGATT
1 CTCAACAAGCTCGGATT
80147873 TCTTAATTCC
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
42 14 0.29
43 35 0.71
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
CTCAACAAGCTCGGATTCTCACATATATCACGAACTCGAACCA
Found at i:80149961 original size:21 final size:21
Alignment explanation
Indices: 80149932--80149974 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
80149922 TACAAAAGTT
80149932 ATTTATCTAACAACAACCATTC
1 ATTTATCTAACAACAACC-TTC
* *
80149954 ATTT-TCTATCATCAACCTTC
1 ATTTATCTAACAACAACCTTC
80149974 A
1 A
80149975 AAACTCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.35, C:0.28, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTTATCTAACAACAACCTTC
Found at i:80153982 original size:22 final size:20
Alignment explanation
Indices: 80153930--80153976 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
80153920 CGGGCTAAAG
80153930 ACACGGGTGTGTCCCAAGGC
1 ACACGGGTGTGTCCCAAGGC
80153950 ACACGGGTGTGTCCCAAGGC
1 ACACGGGTGTGTCCCAAGGC
80153970 ACACGGG
1 ACACGGG
80153977 CTTGTGTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.30, G:0.36, T:0.13
Consensus pattern (20 bp):
ACACGGGTGTGTCCCAAGGC
Found at i:80158324 original size:3 final size:3
Alignment explanation
Indices: 80158318--80158382 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
80158308 TCTTGTGATG
80158318 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
80158366 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
80158383 GCAATATTAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:80158928 original size:48 final size:48
Alignment explanation
Indices: 80158839--80158946 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
80158829 CGAGATGAGA
** **
80158839 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAATGTTGATATGTCT
1 GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
* *** *
80158887 TCCAGTGTAAGAAAATGTCTAGGACATGGCATTGGCATTGATATGTGT
1 GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
80158935 GCCAGTGTAAGA
1 GCCAGTGTAAGA
80158947 TGGGACATGG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (48 bp):
GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
Found at i:80165740 original size:40 final size:40
Alignment explanation
Indices: 80165683--80165905 Score: 163
Period size: 40 Copynumber: 5.6 Consensus size: 40
80165673 TCGAATGATG
* *
80165683 TCCGGGCTAAG-TCCCGAAGGC-TTTCTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTCTGC-AAGTGACTAAA
* * *
80165723 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTCTGCAAGTGACTAAA
* * *
80165763 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAGATCCGAAGGCATTTCTGCAAGTGACTAAA
* * ** * *
80165802 TCCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCC-GGACTAAGATCCGAAGGCATTTCTGCAAGTGACTAAA
** * * *
80165842 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTCTGCAAGTGACTA-AA
* *
80165883 T-CGGGCTATG-TCCGAAGGCATTT
1 TCCGGACTAAGATCCGAAGGCATTT
80165906 GTCCGGTTAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 47 0.29
40 107 0.65
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTCTGCAAGTGACTAAA
Found at i:80165838 original size:79 final size:78
Alignment explanation
Indices: 80165683--80165904 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 78
80165673 TCGAATGATG
* * * * * *
80165683 TCCGGGCTAAGTCCCGAAGGC-TTTCTGCTAAGTGAC-TATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACATA-AT-CGGGCTAAG-CCCGAAGGCAT
*
80165746 TTGTGCGAGTTACTAAA
62 TGGTGCGAGTTACTAAA
80165763 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC-TAATCCTGGGCTAAGCCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACATAAT-C-GGGCTAAGCCCGAAGGCATT
80165826 GGTGCGAGTTACTAAA
63 GGTGCGAGTTACTAAA
** * *
80165842 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCGGGCTATGTCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTAC-ATAATCGGGCTAAGCCCGAAGGCATT
80165905 TGTCCGGTTA
Statistics
Matches: 125, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 80 0.64
80 33 0.26
81 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACATAATCGGGCTAAGCCCGAAGGCATTGGT
GCGAGTTACTAAA
Found at i:80170840 original size:177 final size:177
Alignment explanation
Indices: 80170597--80171433 Score: 1070
Period size: 177 Copynumber: 4.7 Consensus size: 177
80170587 AGTCTGCTTC
* * * * *
80170597 CTTGCTACCTCAGAGAGATAAGGCTTAGTGGCTAAAATCTT-ATCCATTGCCAATATATGGAGAT
1 CTTGCTACCTCAGAGAGATAAGGC-TGGTGGCTTAAAT-TTGCTCCATTGCCGATACATGGAGAT
* * * * *
80170661 AAGACTCGCTATCTTCGATCTGTTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTCAGTCT
64 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCT
* * * * * * *
80170726 ACTTCCTTGCTACTTCAAGAAGATAAGGCTACCATTGCCAACTTGCTCT
129 GCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
* *
80170775 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATTTGCTCCATTACCGATATATGGAGATAA
1 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAA
* * *
80170840 GATTCGCC-GCATTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATTTTCATTCTG
66 GATTCGCCATC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTG
* * *
80170904 CTTCCTTGCTACTTCAGGAAGATAAGGCTACAATCGCCAACCTGGTCT
130 CTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
* * * * * * * * * *
80170952 CTTGCTACTTTAGAGAGATAAGGCTGATGGCTAAAATTAGCTCTATTACTGAAACATAGAGATAA
1 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAA
* * * *
80171017 GACTCGCCATCTTCGATCTGCTCCAC-AGCTGCTTAGAGAGATACGATCTTCAATCTTTAGTCTG
66 GATTCGCCATCTTCGATCTGCTCCACTA-CTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTG
* * *
80171081 CTTCCTTGCTACCTCAGGAAGATAAGACTACCATTGCCAACTTGCTCT
130 CTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
* ** *
80171129 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGTTGATACATGAAGATAA
1 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAA
* * *
80171194 GATTCACCACCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGC
66 GATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGC
*
80171259 TTCTTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
131 TTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
* * *
80171306 CTTGCTACCTCAGAGAGATAAGGCTTGTGGC-TAGAATCTGCTCCATTGCCGATACATGGAGGTA
1 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTA-AATTTGCTCCATTGCCGATACATGGAGATA
* * * * * *
80171370 AGATTTGCCATCTTCGATCTGCACCACTATTGCTTAGGGAGATAAGATGTGCAATTTTCAGTCT
65 AGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCT
80171434 ACTCTACTAC
Statistics
Matches: 574, Mismatches: 79, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
176 6 0.01
177 542 0.94
178 26 0.05
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (177 bp):
CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAA
GATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGC
TTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCT
Found at i:80171292 original size:44 final size:45
Alignment explanation
Indices: 80171231--80171327 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
80171221 ACTGCTTAGG
* ** **
80171231 GAGATAAGATCTTCAATCTTCAGTCTGCT-TCTTTGCTACCTCAG-
1 GAGATAAGATCTACAATCGCCAACCTGCTCTC-TTGCTACCTCAGA
80171275 GAAGATAAGA-CTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
80171320 GAGATAAG
1 GAGATAAG
80171328 GCTTGTGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 34 0.76
45 11 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (45 bp):
GAGATAAGATCTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
Found at i:80171463 original size:354 final size:353
Alignment explanation
Indices: 80170597--80171436 Score: 1200
Period size: 354 Copynumber: 2.4 Consensus size: 353
80170587 AGTCTGCTTC
** * *
80170597 CTTGCTACCTCAGAGAGATAAGGCTTAGTGGCTAAAATCTTATCCATTGCCAATATATGGAGATA
1 CTTGCTACCTCAGAGAGATAAGGCTT-GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATA
* * *
80170662 AGACTCGCTATCTTCGATCTGTTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTCAGTCTA
65 AGACTCGCCATCTTCGATCTGCTCCAC-ACTGCTTAGAGAGATAAGATCTTCAATTTTCAGTCTA
* *
80170727 CTTCCTTGCTACTTCAAGAAGATAAGGCTACCATTGCCAACTTGCTCTCTTGCTACCTCAGAGAG
129 CTTCCTTGCTACTTCAGGAAGATAAGACTACCATTGCCAACTTGCTCTCTTGCTACCTCAGAGAG
* * * * * *
80170792 ATAAGGCTGGTGGCTTAAATTTGCTCCATTACCGATATATGGAGATAAGATTCGCCGCATTCGAT
194 ATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGAAGATAAGATTCACCACATTCAAT
* * *
80170857 CTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATTTTCATTCTGCTTCCTTGCTACTTCAGG
259 CTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGG
* *
80170922 AAGATAAGGCTACAATCGCCAACCTGGTCT
324 AAGATAAGACTACAATCGCCAACCTGCTCT
* * * * * * *
80170952 CTTGCTACTTTAGAGAGATAAGGC-TGATGGCTAAAAT-TAGCTCTATTACTGAAACATAGAGAT
1 CTTGCTACCTCAGAGAGATAAGGCTTG-TGGCTAAAATCT-GCTCCATTGCCGATACATGGAGAT
*
80171015 AAGACTCGCCATCTTCGATCTGCTCCACAGCTGCTTAGAGAGATACGATCTTCAATCTTT-AGTC
64 AAGACTCGCCATCTTCGATCTGCTCCACA-CTGCTTAGAGAGATAAGATCTTCAAT-TTTCAGTC
* *
80171079 TGCTTCCTTGCTACCTCAGGAAGATAAGACTACCATTGCCAACTTGCTCTCTTGCTACCTCAGAG
127 TACTTCCTTGCTACTTCAGGAAGATAAGACTACCATTGCCAACTTGCTCTCTTGCTACCTCAGAG
*** *
80171144 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGTTGATACATGAAGATAAGATTCACCACCTTCA
192 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGAAGATAAGATTCACCACATTCA
*
80171209 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCTTTGCTACCTCA
257 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCA
80171274 GGAAGATAAGACTACAATCGCCAACCTGCTCT
322 GGAAGATAAGACTACAATCGCCAACCTGCTCT
* *
80171306 CTTGCTACCTCAGAGAGATAAGGCTTGTGGCTAGAATCTGCTCCATTGCCGATACATGGAGGTAA
1 CTTGCTACCTCAGAGAGATAAGGCTTGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAA
* * * * * * *
80171371 GATTTGCCATCTTCGATCTGCACCACTATTGCTTAGGGAGATAAGATGTGCAATTTTCAGTCTAC
66 GACTCGCCATCTTCGATCTGCTCCAC-ACTGCTTAGAGAGATAAGATCTTCAATTTTCAGTCTAC
80171436 T
130 T
80171437 CTACTACAAC
Statistics
Matches: 424, Mismatches: 53, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
353 6 0.01
354 390 0.92
355 28 0.07
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (353 bp):
CTTGCTACCTCAGAGAGATAAGGCTTGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAA
GACTCGCCATCTTCGATCTGCTCCACACTGCTTAGAGAGATAAGATCTTCAATTTTCAGTCTACT
TCCTTGCTACTTCAGGAAGATAAGACTACCATTGCCAACTTGCTCTCTTGCTACCTCAGAGAGAT
AAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGAAGATAAGATTCACCACATTCAATCT
GCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAA
GATAAGACTACAATCGCCAACCTGCTCT
Found at i:80171495 original size:44 final size:44
Alignment explanation
Indices: 80171443--80171547 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
80171433 TACTCTACTA
* * *
80171443 CAACTTCAGGGGGATAAGACTTGT-ATCTTGAGCCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTCA-CTTCAACCTGCTCCACTG
* * *
80171487 CTACTTCAGGGAGATAAGGCTTGTCACTTCAACTTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTCACTTCAACCTGCTCCACTG
**
80171531 CAACTTTGGGGAGATAA
1 CAACTTCAGGGAGATAA
80171548 AGTTTGCTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 50 0.98
45 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGACTTGTCACTTCAACCTGCTCCACTG
Found at i:80171857 original size:64 final size:64
Alignment explanation
Indices: 80171755--80171943 Score: 299
Period size: 64 Copynumber: 3.0 Consensus size: 64
80171745 TCATGTATCT
*
80171755 ATGCTTATG-CGAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTC-AAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* ** * *
80171819 ATGCTTATGTCAACTAATTAGGACACTATGATCGAAATGAATAAAATGTTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
*
80171883 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTACCTAGAT
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGAT
80171944 ATGTTATGAA
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
64 111 0.99
65 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:80173068 original size:11 final size:11
Alignment explanation
Indices: 80173052--80173099 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
80173042 TGGTTGATTC
80173052 TTTTTTTT-TT
1 TTTTTTTTATT
*
80173062 ATTTTTTTATT
1 TTTTTTTTATT
*
80173073 ATTTTTTTATT
1 TTTTTTTTATT
*
80173084 TTTTTCTTGATT
1 TTTTT-TTTATT
80173096 TTTT
1 TTTT
80173100 AAGGTCTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 7 0.21
11 17 0.52
12 9 0.27
ACGTcount: A:0.10, C:0.02, G:0.02, T:0.85
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:80173077 original size:19 final size:20
Alignment explanation
Indices: 80173055--80173099 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
80173045 TTGATTCTTT
80173055 TTTTTTTATTTTTTTATT-A
1 TTTTTTTATTTTTTTATTGA
*
80173074 TTTTTTTATTTTTTTCTTGA
1 TTTTTTTATTTTTTTATTGA
80173094 TTTTTT
1 TTTTTT
80173100 AAGGTCTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.84
Consensus pattern (20 bp):
TTTTTTTATTTTTTTATTGA
Found at i:80184548 original size:131 final size:131
Alignment explanation
Indices: 80184334--80184776 Score: 326
Period size: 131 Copynumber: 3.4 Consensus size: 131
80184324 CGAAGGGATC
* * * *
80184334 TTCGATTGTTTTGAGCAAAAGAGAAAGCACAACCCAGCGCGATTGGGC-TCGATTCTCAAATCGC
1 TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCAT-GATTCTCAAATCGC
* * *
80184398 CAAACATCGAATATCGCCTTCGTTTTGCAAGG-TTTTTA-ATAAACATGAGTGAAAACCTAAA-G
65 CAAACACCGAATATCGCCTTCGTTTT-AAAGGATTTTTAGA-AAACACGAGTGAAAACCTAAACG
*
80184460 GAATA
128 G-ACA
* * * **
80184465 TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGGTAGGGCATGATTCTCGAATTGTT
1 TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCAAATCGCC
* * * **
80184530 AAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACACGAGTGAAATTCTAAACGGAC
66 AAACACCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAAACACGAGTGAAAACCTAAACGGAC
*
80184595 C
131 A
*** * ** * * * **
80184596 TTCGATAACTTTGAGTAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTC-CATGAATTA
1 TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCA--AATCG
** * * * ** *** *
80184660 CCAAGTATCGAATATCGCCTTCGTTTTGAAGAATTTTT-GAAAGGTACGAGTGAAATTTTGAA-G
64 CCAAACACCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAA-ACACGAGTGAAAACCTAAACG
*
80184723 AGATA
128 -GACA
* ** * *
80184728 TTCAATTGTTTTGAGCAAAC-ACGAAATTGCAACCCAACACGTTAGGGCA
1 TTCGATTGTTTTGAGCAAACGA-GAAATCACAACCCAGCACGATAGGGCA
80184777 CTATTCCGCG
Statistics
Matches: 252, Mismatches: 51, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
130 5 0.02
131 151 0.60
132 96 0.38
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (131 bp):
TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCAAATCGCC
AAACACCGAATATCGCCTTCGTTTTAAAGGATTTTTAGAAAACACGAGTGAAAACCTAAACGGAC
A
Found at i:80186001 original size:11 final size:11
Alignment explanation
Indices: 80185985--80186011 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
80185975 ATATATATAC
80185985 ATTTAACATAA
1 ATTTAACATAA
80185996 ATTTAACATAA
1 ATTTAACATAA
80186007 ATTTA
1 ATTTA
80186012 GTCTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTTAACATAA
Found at i:80187301 original size:44 final size:44
Alignment explanation
Indices: 80187253--80187537 Score: 401
Period size: 44 Copynumber: 6.5 Consensus size: 44
80187243 CTTTATCAAC
* ***
80187253 ACAGAGATGCCAAATCTACTATCTTCGATCTG-TCCTCTAACAAT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCT-CTCCGCCAAT
* * *
80187297 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTCCAAT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
*
80187341 ATAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
* *
80187385 ACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAGT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
* * *
80187429 ACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCCGCCAGT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
* *
80187473 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTTTCTGCCAAT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
* *
80187517 ACAGAAACGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTGCTA
80187538 GATTCGCCAA
Statistics
Matches: 217, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
44 216 1.00
45 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (44 bp):
ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAAT
Found at i:80196248 original size:29 final size:29
Alignment explanation
Indices: 80196209--80196283 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
80196199 GGTTGAGAGA
* *
80196209 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
80196238 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
80196267 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
80196284 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:80202349 original size:131 final size:131
Alignment explanation
Indices: 80202135--80202577 Score: 353
Period size: 131 Copynumber: 3.4 Consensus size: 131
80202125 TGAAGGGATC
* * *
80202135 TTCGATTGTTTTGAGCAAAAGAGAAAGCGCAACCCAGCGCGATAGGGC-TCGATTCTCAAATCGC
1 TTCGATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCAT-GATTCTCAAATCGC
* *
80202199 AAAACATCGAATAGCGCCTTCGTTTTGCAAGG-TTTTTA-ATA-AACATGAGTGAAAACCTAAAG
65 AAAACATCGAATAGCGCCTTCGTTTT-AAAGGATTTTTAGA-AGAA-ACGAGTGAAAACCTAAAG
*
80202261 GAATA
127 GAACA
* * * **
80202266 TTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATTGTT
1 TTCGATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCAAATCGCA
* ** * ** *
80202331 AAACATCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAAACGGGTGAAATTCTAAAGGGAC
66 AAACATCGAATAGCGCCTTCGTTTTAAAGGATTTTTAGAAGAAACGAGTGAAAACCTAAAGGAAC
*
80202396 C
131 A
** * * * * * **
80202397 TTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGTTGGGGCACGATTC-CATGAATTA
1 TTCGATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCA--AATCG
* ** * * * ** ** *
80202461 CCAAGTATCGAATATCGCCTTCGTTTTGAAGAATTTTT-GAAAGGTACGAGTGAAAATTTGAA-G
64 CAAAACATCGAATAGCGCCTTCGTTTTAAAGGATTTTTAG-AAGAAACGAGTGAAAACCTAAAGG
*
80202524 AGATA
128 A-ACA
* * * *
80202529 TTCAATTGTTTTGAGCAAAC-ACGAAATTGCAACCCAACACGTTAGGGCA
1 TTCGATTGTTTTGAGCAAACGA-GAAATCGCAACCCAGCACGATAGGGCA
80202578 CTATTCCGCG
Statistics
Matches: 253, Mismatches: 50, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
130 5 0.02
131 150 0.59
132 98 0.39
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (131 bp):
TTCGATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCAAATCGCA
AAACATCGAATAGCGCCTTCGTTTTAAAGGATTTTTAGAAGAAACGAGTGAAAACCTAAAGGAAC
A
Found at i:80203563 original size:2 final size:2
Alignment explanation
Indices: 80203556--80203586 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
80203546 AAATGGAACA
*
80203556 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80203587 AAGGTTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80212798 original size:23 final size:24
Alignment explanation
Indices: 80212772--80212831 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
80212762 ATGTATATGA
* *
80212772 ATTTGTATGTAATATTT-TGGTTT
1 ATTTGTATATAACATTTATGGTTT
80212795 ATTTGTATATAACATTTATGG-TT
1 ATTTGTATATAACATTTATGGTTT
80212818 A--TGTATATAA-ATTT
1 ATTTGTATATAACATTT
80212832 TTTTATTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 4 0.12
21 9 0.26
23 18 0.53
24 3 0.09
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.55
Consensus pattern (24 bp):
ATTTGTATATAACATTTATGGTTT
Found at i:80213367 original size:19 final size:19
Alignment explanation
Indices: 80213343--80213397 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
80213333 CTAGATGTAG
80213343 TTTAAAATATTATAAAAAA
1 TTTAAAATATTATAAAAAA
* *
80213362 TTTAAAA-AGTTGTAAAATA
1 TTTAAAATA-TTATAAAAAA
80213381 -TTATAAAT-TTATAAAAA
1 TTTA-AAATATTATAAAAA
80213398 TTATCGATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
TTTAAAATATTATAAAAAA
Found at i:80213632 original size:2 final size:2
Alignment explanation
Indices: 80213625--80213656 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80213615 ACAAATTATT
80213625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80213657 AAAGTTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80214048 original size:24 final size:24
Alignment explanation
Indices: 80214019--80214069 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
80214009 CTTAAATAAA
80214019 AGATCATTTATTTATATAACTAAT
1 AGATCATTTATTTATATAACTAAT
80214043 AGATCATTTATTTATATAACTAAT
1 AGATCATTTATTTATATAACTAAT
80214067 AGA
1 AGA
80214070 CACAAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (24 bp):
AGATCATTTATTTATATAACTAAT
Found at i:80214986 original size:38 final size:38
Alignment explanation
Indices: 80214842--80215007 Score: 172
Period size: 38 Copynumber: 4.3 Consensus size: 38
80214832 TGAGGTATAA
* * * * *
80214842 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACTAAGCCTGCGGGA-TTT
* * * *
80214881 AAACTCAGATATAATACCAGCACTAGGCCTTCGGGATTT
1 -AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
*
80214920 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
* *
80214958 AACCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 AACCCGGATATAATACCAGCACTA-AGCCTGCGGG-ATTT
80214997 AAGCCCGGATA
1 AA-CCCGGATA
80215008 CACATCAAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 63 0.59
39 8 0.07
40 35 0.33
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
Found at i:80215004 original size:78 final size:78
Alignment explanation
Indices: 80214842--80215007 Score: 194
Period size: 78 Copynumber: 2.1 Consensus size: 78
80214832 TGAGGTATAA
* * * *
80214842 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAA
*
80214907 GCCTTCGGGATTT
66 GCCTGCGGGATTT
* * * *
80214920 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCA-TAT
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTA-
*
80214982 AGCCTGCGGGTCTTT
65 AGCCTGCGGG-ATTT
80214997 AAGCCCGGATA
1 AA-CCCGGATA
80215008 CACATCAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
75 2 0.03
76 26 0.35
77 8 0.11
78 39 0.52
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAA
GCCTGCGGGATTT
Found at i:80244365 original size:29 final size:29
Alignment explanation
Indices: 80244332--80244396 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
80244322 GTGACGAGAT
80244332 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80244361 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
80244390 CGGCACT
1 TGGCACT
80244397 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80252394 original size:29 final size:29
Alignment explanation
Indices: 80252361--80252425 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
80252351 GTGACGAGAT
80252361 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80252390 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
80252419 CGGCACT
1 TGGCACT
80252426 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80252531 original size:2 final size:2
Alignment explanation
Indices: 80252526--80252560 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
80252516 GTGCGTACTC
*
80252526 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80252561 CCGATCGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80255561 original size:40 final size:40
Alignment explanation
Indices: 80255460--80255644 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
80255450 TATTCGAATG
* * * *
80255460 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
80255501 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
80255541 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
80255581 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
80255620 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80255645 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 94 0.78
41 26 0.21
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:80257566 original size:34 final size:34
Alignment explanation
Indices: 80257501--80257566 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
80257491 CTGAGTTAAT
**
80257501 CTATTATAAGCATATTATTTGCTATTGTATTGAA
1 CTATTATAAGCATATTATTTGCTATCATATTGAA
*
80257535 CTATTATAAGCATATT-TATTGTTATCATATTG
1 CTATTATAAGCATATTAT-TTGCTATCATATTG
80257567 TTCTGTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (34 bp):
CTATTATAAGCATATTATTTGCTATCATATTGAA
Found at i:80259449 original size:3 final size:3
Alignment explanation
Indices: 80259441--80259486 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
80259431 TAAAGATAGA
80259441 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
80259487 ATTTGAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:80260627 original size:16 final size:16
Alignment explanation
Indices: 80260606--80260658 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
80260596 GAGTAGAAAG
80260606 AAAATTAGAAAGATAA
1 AAAATTAGAAAGATAA
* *
80260622 AAAATTA-AAGGGGTAA
1 AAAATTAGAA-AGATAA
*
80260638 AAAATTAGAATGATAA
1 AAAATTAGAAAGATAA
*
80260654 CAAAT
1 AAAAT
80260659 AACATAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 2 0.07
16 26 0.87
17 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.15, T:0.21
Consensus pattern (16 bp):
AAAATTAGAAAGATAA
Found at i:80262142 original size:51 final size:51
Alignment explanation
Indices: 80262080--80262187 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 51
80262070 AATATTTCAC
*
80262080 TCAATACAACTAAATAGAAAGTCCATAATACACTAAAAAACTTACCTATTCT
1 TCAA-ACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
* **
80262132 TCAAACAACTAAATAAAAAGTCCATAATACATTAAGGAACTTACCTATTCT
1 TCAAACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
80262183 TCAAA
1 TCAAA
80262188 TGAGGATTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 48 0.92
52 4 0.08
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (51 bp):
TCAAACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
Found at i:80270150 original size:40 final size:40
Alignment explanation
Indices: 80270105--80270272 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
80270095 CGGAATACAA
80270105 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
80270145 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
80270185 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
80270225 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
80270265 CCGGATAT
1 CCGGATAT
80270273 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:80278215 original size:40 final size:40
Alignment explanation
Indices: 80278170--80278337 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
80278160 CGGAATACAA
80278170 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
80278210 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
80278250 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
80278290 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
80278330 CCGGATAT
1 CCGGATAT
80278338 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:80281765 original size:16 final size:16
Alignment explanation
Indices: 80281744--80281777 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
80281734 GTGATCTAAA
80281744 CTCATTGAGTTGTGGT
1 CTCATTGAGTTGTGGT
80281760 CTCATTGAGTTGTGGT
1 CTCATTGAGTTGTGGT
80281776 CT
1 CT
80281778 GAGTTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44
Consensus pattern (16 bp):
CTCATTGAGTTGTGGT
Found at i:80284101 original size:2 final size:2
Alignment explanation
Indices: 80284094--80284119 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80284084 GTAATCATTT
80284094 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
80284120 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:80291236 original size:37 final size:37
Alignment explanation
Indices: 80291183--80291430 Score: 433
Period size: 37 Copynumber: 6.7 Consensus size: 37
80291173 CGAATAGTCC
* *
80291183 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
80291220 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
80291257 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
80291294 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* * *
80291331 CCACATGTAGTCATTGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
**
80291368 CCACACGTAGTCATCATGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
80291405 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
80291431 AGAATATATT
Statistics
Matches: 199, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 199 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:80291660 original size:48 final size:48
Alignment explanation
Indices: 80291606--80292125 Score: 826
Period size: 48 Copynumber: 10.6 Consensus size: 48
80291596 GCCGAATCAC
* *
80291606 TAGCCATTCGGCTTTACCACATATACATATATCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
80291654 TAGCCATTC-GCTTTACCACATATACAGATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
80291701 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
80291749 TAACCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
80291797 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
80291845 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATAC--A--T---ATT----TCACAT
*
80291904 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
80291952 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
80292000 TGGCCATTCGGCTTTACCCCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
80292048 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
80292096 TGGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
80292126 ATATTTATCT
Statistics
Matches: 446, Mismatches: 14, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
47 44 0.10
48 349 0.78
50 1 0.00
52 4 0.01
55 4 0.01
57 1 0.00
59 43 0.10
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:80291911 original size:203 final size:203
Alignment explanation
Indices: 80291695--80292096 Score: 759
Period size: 203 Copynumber: 2.0 Consensus size: 203
80291685 CATACATATT
80291695 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGG
* *
80291760 CTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
66 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCCCATATACAT
80291825 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
131 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
80291890 CATTAGCC
196 CATTAGCC
* *
80291898 TCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGG
*
80291963 CTTTACCACATATACATATCTCATACATATTTCACATTGGCCATTCGGCTTTACCCCATATACAT
66 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCCCATATACAT
80292028 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
131 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
80292093 CATT
196 CATT
80292097 GGCCATTCGG
Statistics
Matches: 194, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 194 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (203 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGG
CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCCCATATACAT
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
CATTAGCC
Found at i:80291981 original size:251 final size:250
Alignment explanation
Indices: 80291606--80292125 Score: 882
Period size: 251 Copynumber: 2.1 Consensus size: 250
80291596 GCCGAATCAC
*
80291606 TAGCCATTCGGCTTTACCACATATACATATATCATACATATTT--C----G-----CATTAGCCA
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCTCACATTAGCCA
80291660 TTCGCTTTACCACATATACAGATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
66 TTCGCTTTACCACATATACAGATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
80291725 ACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCGCATATACATATCTCATACATAT
131 ACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCCCATATACATATCTCATACATAT
80291790 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
196 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
80291845 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCTCACATTAGCCA
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCTCACATTAGCCA
* *
80291910 TTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
66 TTC-GCTTTACCACATATACAGATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
**
80291975 TACATATCTCATACATATTTCACATTGGCCATTCGGCTTTACCCCATATACATATCTCATACATA
130 TACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCCCATATACATATCTCATACATA
80292040 TTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
195 TTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
80292096 TGGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
80292126 ATATTTATCT
Statistics
Matches: 260, Mismatches: 9, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
239 41 0.16
241 1 0.00
245 1 0.00
250 12 0.05
251 205 0.79
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (250 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCTCACATTAGCCA
TTCGCTTTACCACATATACAGATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
ACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCCCATATACATATCTCATACATAT
TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
Found at i:80293487 original size:2 final size:2
Alignment explanation
Indices: 80293480--80293504 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80293470 AATTCATTAT
80293480 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80293505 CTAAACACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80295656 original size:20 final size:21
Alignment explanation
Indices: 80295608--80295657 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
80295598 AGTCACTTAA
80295608 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAATATCTATCAT
80295629 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAATATCTATCAT
80295650 C-AAACTTT
1 CAAAACTTT
80295658 CAAAATTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (21 bp):
CAAAACTTTAATATCTATCAT
Found at i:80295669 original size:21 final size:21
Alignment explanation
Indices: 80295608--80295663 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
80295598 AGTCACTTAA
*
80295608 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAAAATCTATCAT
*
80295629 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAAAATCTATCAT
80295650 C-AAACTTTCAAAAT
1 CAAAACTTT-AAAAT
80295664 TCATCAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 7 0.21
21 26 0.79
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.36
Consensus pattern (21 bp):
CAAAACTTTAAAATCTATCAT
Found at i:80306013 original size:18 final size:19
Alignment explanation
Indices: 80305986--80306021 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80305976 GAATGTACTA
80305986 TTCATATACA-CATATATT
1 TTCATATACATCATATATT
*
80306004 TTCATTTACATCATATAT
1 TTCATATACATCATATAT
80306022 AAATTGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (19 bp):
TTCATATACATCATATATT
Found at i:80306311 original size:56 final size:56
Alignment explanation
Indices: 80306251--80306441 Score: 285
Period size: 56 Copynumber: 3.4 Consensus size: 56
80306241 TCCCAGACAG
* * * *
80306251 GGTCTTAC-CTGCACACATAAATCGGAATCACATATCAATGCCAATGTATTAAATGT
1 GGTCTTACTC-GCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
80306307 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCTAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* *
80306363 GGTCTTACTCACACACATATATTGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* *
80306419 GATCTTACTCCCACACATATATC
1 GGTCTTACTCGCACACATATATC
80306442 AATGCCATGG
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
56 122 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:80307369 original size:18 final size:17
Alignment explanation
Indices: 80307339--80307372 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80307329 ATGCATGATG
*
80307339 AATTTTATTATAACATA
1 AATTTTATAATAACATA
80307356 AATTATTATAATAACAT
1 AATT-TTATAATAACAT
80307373 TTTATTATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTTATAATAACATA
Found at i:80312553 original size:8 final size:8
Alignment explanation
Indices: 80312540--80312569 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
80312530 CTAGACCGGC
80312540 AAAAGCCG
1 AAAAGCCG
80312548 AAAAGCCG
1 AAAAGCCG
*
80312556 AAATGCCG
1 AAAAGCCG
80312564 AAAAGC
1 AAAAGC
80312570 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:80312857 original size:27 final size:28
Alignment explanation
Indices: 80312819--80312881 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
80312809 TGTACTAGAG
*
80312819 TACCCCTATGTATGCAAAATTACAT-TA
1 TACCCCTATGTATGCAAAATGACATCTA
*
80312846 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACATCTA
80312874 TACCCCTA
1 TACCCCTA
80312882 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACATCTA
Found at i:80313045 original size:27 final size:28
Alignment explanation
Indices: 80312999--80313076 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
80312989 GGTGGCTATG
* *
80312999 CCACAAATTATCTGTTCTGGTGGCCCTA
1 CCACAAAATATCTGTTCTGGTGGCACTA
** *
80313027 CCAC-GTATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGGCACTA
80313054 CCACAAAATATCTGTATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
80313077 ACTCTGTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 22 0.54
28 12 0.29
29 7 0.17
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCACTA
Found at i:80313087 original size:29 final size:28
Alignment explanation
Indices: 80312997--80313087 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
80312987 CTGGTGGCTA
* * *
80312997 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* ** *
80313025 TACCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
80313052 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
80313081 TGTCACA
1 TGCCACA
80313088 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.44
28 13 0.26
29 15 0.30
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:80313095 original size:55 final size:56
Alignment explanation
Indices: 80312987--80313101 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
80312977 AGGAAGCGTC
* * *
80312987 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTACCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
* ** *
80313042 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTACCACATATATCTGTAT
80313098 CTGG
1 CTGG
80313102 CAGCAATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
Done.