Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 261 of 425
Found at i:80314183 original size:11 final size:10
Alignment explanation
Indices: 80314155--80314188 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
80314145 AGCCTGTAAG
80314155 TATTCTGAAT
1 TATTCTGAAT
*
80314165 TTTTCTGAAT
1 TATTCTGAAT
80314175 ATATTCTGAAT
1 -TATTCTGAAT
80314186 TAT
1 TAT
80314189 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:80320368 original size:8 final size:8
Alignment explanation
Indices: 80320355--80320384 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
80320345 CTAGATCGGC
80320355 AAAAGCCG
1 AAAAGCCG
80320363 AAAAGCCG
1 AAAAGCCG
*
80320371 AAATGCCG
1 AAAAGCCG
80320379 AAAAGC
1 AAAAGC
80320385 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:80320691 original size:28 final size:28
Alignment explanation
Indices: 80320634--80320697 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
80320624 TGTACTAGAG
*
80320634 TACCCCTATGTATGCAAAATTACAATTA
1 TACCCCTATGTATGCAAAATGACAATTA
*
80320662 TACCCCTATGTATGCAAAATGAC-CTCTA
1 TACCCCTATGTATGCAAAATGACAAT-TA
80320690 TACCCCTA
1 TACCCCTA
80320698 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACAATTA
Found at i:80320844 original size:28 final size:27
Alignment explanation
Indices: 80320803--80320892 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
80320793 AGGAAGCGTC
80320803 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
80320831 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
* *
80320858 CTGGTGGTACTGGCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
80320887 CTGGTG
1 CTGGTG
80320893 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 21 0.41
28 23 0.45
29 7 0.14
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:80320911 original size:55 final size:56
Alignment explanation
Indices: 80320803--80320917 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
80320793 AGGAAGCGTC
* * *
80320803 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
80320858 CTGGTGG-TACTGGCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
80320914 CTGG
1 CTGG
80320918 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 2 0.04
55 28 0.56
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:80329076 original size:28 final size:28
Alignment explanation
Indices: 80329030--80329098 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
80329020 TTTAAAACCC
*
80329030 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80329057 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80329085 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
80329099 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:80330750 original size:20 final size:20
Alignment explanation
Indices: 80330727--80330764 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80330717 CACATCCAAA
*
80330727 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
80330747 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
80330765 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:80332151 original size:40 final size:41
Alignment explanation
Indices: 80332078--80332258 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 41
80332068 CTCGTTCAAT
* *
80332078 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
* * *
80332118 TGCCTTCGGGACTTAACCCGGAAT-TAGTGACTCGCACCAA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
*
80332158 TGCCTTTGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
* * *
80332197 TGCCTTC-GGATCTTAGTCCGG-ATATAGTTACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCACAAA
80332238 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
80332259 CATCATTCGA
Statistics
Matches: 120, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.28
40 72 0.60
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
Found at i:80332218 original size:79 final size:80
Alignment explanation
Indices: 80332079--80332258 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
80332069 TCGTTCAATT
* *
80332079 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA-AT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA-
* *
80332142 TAGTGAC-TCGCACCAAT
64 TAGTGACTTAGCA-CAAA
* **
80332159 GCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
*
80332222 AGTTACTTAGCACAAA
65 AGTGACTTAGCACAAA
80332238 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
80332259 CATCATTCGA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 25 0.29
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
GTGACTTAGCACAAA
Found at i:80338636 original size:40 final size:40
Alignment explanation
Indices: 80338571--80338706 Score: 118
Period size: 40 Copynumber: 3.4 Consensus size: 40
80338561 ACTATGTTTG
* *
80338571 GCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGAATCGAGATAGCTTCGACTATATAAA
**
80338611 GCACTTTA-TGTGCGAATCG-GAATAGCTTCGACTATATATG
1 GCAC-TTAGTGTGCGAATCGAG-ATAGCTTCGACTATATAAA
* * * *
80338651 GCACTTAGTGTACGAGA-CTTAGATAGCTTCGGCTATGA-AAG
1 GCACTTAGTGTGCGA-ATC-GAGATAGCTTCGACTAT-ATAAA
*
80338692 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
80338707 GATTATAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
39 4 0.05
40 41 0.52
41 32 0.41
42 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGAGATAGCTTCGACTATATAAA
Found at i:80342895 original size:23 final size:23
Alignment explanation
Indices: 80342842--80342895 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
80342832 AGGTCGTATG
** *
80342842 AGCTTACTAATTTAGCTCGTTAG
1 AGCTTACTAATTTAGCTCAATAA
*
80342865 AGCGTACT-ATTTCAGCTCAATAA
1 AGCTTACTAATTT-AGCTCAATAA
80342888 AGCTTACT
1 AGCTTACT
80342896 GTTCATCAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (23 bp):
AGCTTACTAATTTAGCTCAATAA
Found at i:80344324 original size:8 final size:8
Alignment explanation
Indices: 80344313--80344342 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
80344303 TAGTATTTCA
80344313 GTATGAAT
1 GTATGAAT
80344321 GTATGAAT
1 GTATGAAT
80344329 GTATGAAT
1 GTATGAAT
80344337 GTATGA
1 GTATGA
80344343 GATATGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (8 bp):
GTATGAAT
Found at i:80350096 original size:37 final size:37
Alignment explanation
Indices: 80350048--80350234 Score: 302
Period size: 37 Copynumber: 5.1 Consensus size: 37
80350038 CTTTAGCTCA
* * * *
80350048 GACAAAATCTCCACATGAAGTTATCGGGTCTTACCCA
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
80350085 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
80350122 GACATAATCTCCACACGTAGTCATCGAGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
80350159 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
80350196 GACATAATCTCCACACGTAATCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
80350233 GA
1 GA
80350235 ATATATTTCC
Statistics
Matches: 140, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 140 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:80350448 original size:46 final size:46
Alignment explanation
Indices: 80350380--80350561 Score: 133
Period size: 47 Copynumber: 3.9 Consensus size: 46
80350370 TATATATACA
* * *
80350380 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
80350426 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
80350471 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
80350521 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
80350562 CATACGCATG
Statistics
Matches: 113, Mismatches: 14, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 7 0.06
46 40 0.35
47 50 0.44
48 2 0.02
49 6 0.05
51 2 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:80350506 original size:47 final size:47
Alignment explanation
Indices: 80350444--80350926 Score: 705
Period size: 47 Copynumber: 10.1 Consensus size: 47
80350434 ACACGTTTCG
* * * **
80350444 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
80350491 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
80350538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
80350585 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
80350632 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
80350685 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
80350732 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
80350783 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
80350830 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
80350877 CATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
80350924 CAT
1 CAT
80350927 AAAATCCTAA
Statistics
Matches: 399, Mismatches: 27, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
47 311 0.78
49 1 0.00
51 45 0.11
53 42 0.11
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:80350875 original size:245 final size:241
Alignment explanation
Indices: 80350444--80350904 Score: 769
Period size: 245 Copynumber: 1.9 Consensus size: 241
80350434 ACACGTTTCG
* **
80350444 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
80350509 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
66 ATCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
* *
80350574 CACATTCATTACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
131 CACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
*
80350639 CATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
196 CATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCA
* *
80350685 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
80350750 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 AT--CAC--ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
80350815 TGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
127 TGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
*
80350880 TGGCCATTTGGCCTTATCACACATA
192 TGGCCATTCGGCCTTATCACACATA
80350905 CGCATGTTCA
Statistics
Matches: 203, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
241 62 0.31
243 2 0.01
245 139 0.68
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (241 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
CACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCA
Found at i:80350877 original size:25 final size:25
Alignment explanation
Indices: 80350848--80350925 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 25
80350838 ATTCGGCCTT
80350848 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
** ** *
80350873 AT--CACATTGGCCAT-TTGGCCTT-
1 ATCACACATACG-CATGTTCACATTC
*
80350895 ATCACACATACGCATGTTCACATCC
1 ATCACACATACGCATGTTCACATTC
80350920 ATCACA
1 ATCACA
80350926 TAAAATCCTA
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 2 0.05
23 14 0.38
24 13 0.35
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATACGCATGTTCACATTC
Found at i:80355403 original size:40 final size:39
Alignment explanation
Indices: 80355358--80355565 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
80355348 CGGAATACAA
*
80355358 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80355398 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80355438 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
80355478 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
80355518 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
80355558 CCGGATAT
1 CCGGATAT
80355566 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:80355498 original size:80 final size:81
Alignment explanation
Indices: 80355358--80355563 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
80355348 CGGAATACAA
* * *
80355358 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
80355422 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
80355438 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
80355501 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
80355518 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
80355564 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:80357967 original size:40 final size:40
Alignment explanation
Indices: 80357912--80358121 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80357902 AACATTGGAA
80357912 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80357952 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80357992 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80358032 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80358071 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80358112 CTATATCCGG
1 ATATATCCGG
80358122 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80366102 original size:40 final size:40
Alignment explanation
Indices: 80366047--80366153 Score: 214
Period size: 40 Copynumber: 2.7 Consensus size: 40
80366037 GAACATTGAA
80366047 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80366087 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80366127 ATATATCCGGGCTAAGACCCGAAGGCA
1 ATATATCCGGGCTAAGACCCGAAGGCA
80366154 NAAGTTTGGG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80367456 original size:23 final size:24
Alignment explanation
Indices: 80367378--80367463 Score: 88
Period size: 24 Copynumber: 3.6 Consensus size: 24
80367368 GGCTATGTGA
80367378 CACTATGTGTGC-A-AAAACTAAGTGG
1 CACTATGTGTGCGAGAAAAC--A-TGG
**
80367403 CACTATGTGTGCGAGATTACATGG
1 CACTATGTGTGCGAGAAAACATGG
*
80367427 CACTATGTGTGCGAGAAAACGT-G
1 CACTATGTGTGCGAGAAAACATGG
*
80367450 CACTATGTCTGCGA
1 CACTATGTGTGCGA
80367464 ATAGTAAGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.26
24 22 0.42
25 13 0.25
26 1 0.02
27 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (24 bp):
CACTATGTGTGCGAGAAAACATGG
Found at i:80370387 original size:23 final size:23
Alignment explanation
Indices: 80370357--80370404 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
80370347 GTACATAGCC
80370357 AAAGCTATCTCAAATCACACACT
1 AAAGCTATCTCAAATCACACACT
*
80370380 AAAGCTATCTCAAATCGCACACT
1 AAAGCTATCTCAAATCACACACT
80370403 AA
1 AA
80370405 GTGCCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (23 bp):
AAAGCTATCTCAAATCACACACT
Found at i:80374726 original size:40 final size:40
Alignment explanation
Indices: 80374660--80374826 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80374650 AAATTGAATG
* * *
80374660 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80374699 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80374739 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80374779 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80374819 ATATCCGG
1 ATATCCGG
80374827 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80382724 original size:40 final size:40
Alignment explanation
Indices: 80382665--80382806 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
80382655 AAATTGAATG
* * *
80382665 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
80382705 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
80382745 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
80382785 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
80382807 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:80382807 original size:40 final size:39
Alignment explanation
Indices: 80382704--80382832 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
80382694 TGCTGGAAAT
* * *
80382704 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
80382744 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
80382784 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
80382824 TATATCCGG
1 TATATCCGG
80382833 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:80385056 original size:25 final size:25
Alignment explanation
Indices: 80385028--80385106 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
80385018 CTAATGGCCA
80385028 ATGTGATGAATGTGAAAGAGTATAT
1 ATGTGATGAATGTGAAAGAGTATAT
* * **
80385053 ATGTGAT-AAGGCCT-AATG-G-CCA-
1 ATGTGATGAATG--TGAAAGAGTATAT
80385075 ATGTGATGAATGTGAAAGAGTATAT
1 ATGTGATGAATGTGAAAGAGTATAT
80385100 ATGTGAT
1 ATGTGAT
80385107 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
21 1 0.03
22 10 0.26
23 5 0.13
24 5 0.13
25 17 0.44
26 1 0.03
ACGTcount: A:0.37, C:0.05, G:0.28, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGAGTATAT
Found at i:80385197 original size:49 final size:47
Alignment explanation
Indices: 80385000--80385334 Score: 517
Period size: 47 Copynumber: 7.0 Consensus size: 47
80384990 TGTAGGAGAT
*
80385000 GTATATATATGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
80385047 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
80385094 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
80385141 GTATATATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 G--TATATA--TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
80385192 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
80385241 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
80385288 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80385335 CATATGTGTG
Statistics
Matches: 271, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 135 0.50
49 89 0.33
51 47 0.17
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:80385254 original size:147 final size:143
Alignment explanation
Indices: 80385001--80385334 Score: 605
Period size: 147 Copynumber: 2.3 Consensus size: 143
80384991 GTAGGAGATG
*
80385001 TATATATATGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
80385066 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80385131 ATGTGAAGGTGTA
131 ATGTGAAGGTGTA
*
80385144 TATATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATA--TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAA
80385209 GGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTG
62 GGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTG
80385274 ATGAATGTGAAGGTGTA
127 ATGAATGTGAAGGTGTA
*
80385291 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80385335 CATATGTGTG
Statistics
Matches: 184, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
143 6 0.03
145 76 0.41
147 102 0.55
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAGGTGTA
Found at i:80385382 original size:48 final size:48
Alignment explanation
Indices: 80385326--80385429 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
80385316 CGATGTGATG
80385326 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
80385374 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
80385422 AATGTGAA
1 AATGTGAA
80385430 TGTTGTAACA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:80385523 original size:37 final size:37
Alignment explanation
Indices: 80385469--80385559 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
80385459 AACTTGGAAA
* *
80385469 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
80385507 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
80385544 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
80385560 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:80394123 original size:37 final size:37
Alignment explanation
Indices: 80394068--80394174 Score: 180
Period size: 36 Copynumber: 2.9 Consensus size: 37
80394058 TAGCTCGAAT
* *
80394068 AATCCCCACACATAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
80394105 AATCTCCACACGTAGTCATCGGGTCTTA-CCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
80394141 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80394175 ATATATTTCC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 35 0.53
37 31 0.47
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:80394367 original size:48 final size:48
Alignment explanation
Indices: 80394307--80394510 Score: 309
Period size: 48 Copynumber: 4.2 Consensus size: 48
80394297 CGGCCACAAT
*
80394307 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
80394355 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* ** *
80394403 ATATATATATATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCAC
1 --ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
80394453 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
80394501 ACATATATAT
1 ATATACATAT
80394511 ATTTATCTTG
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
48 97 0.69
50 43 0.31
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:80394436 original size:98 final size:98
Alignment explanation
Indices: 80394300--80394512 Score: 345
Period size: 98 Copynumber: 2.2 Consensus size: 98
80394290 GGTCATTCGG
* * *
80394300 CCACAATATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CCAC-ATATATATATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATAT
*
80394365 CTCATACATATTTCACATTAGCCATTCGGATTTA
65 CTCATACATATTTCACACTAGCCATTCGGATTTA
**
80394399 CCACATATATATATATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCACATATACATATC
1 CCACATATATATATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATC
*
80394464 TCATACATATTTCACACTAGCCATTCGGCTTTA
66 TCATACATATTTCACACTAGCCATTCGGATTTA
*
80394497 CCACACATATATATAT
1 CCACATATATATATAT
80394513 TTATCTTGTA
Statistics
Matches: 106, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
98 102 0.96
99 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (98 bp):
CCACATATATATATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATC
TCATACATATTTCACACTAGCCATTCGGATTTA
Found at i:80396972 original size:21 final size:21
Alignment explanation
Indices: 80396946--80396988 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
80396936 TAAATGTTTG
80396946 ATAACCAATGAGCCAATATTT
1 ATAACCAATGAGCCAATATTT
80396967 ATAACCAATGAGCCAATATTT
1 ATAACCAATGAGCCAATATTT
80396988 A
1 A
80396989 CTTTCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (21 bp):
ATAACCAATGAGCCAATATTT
Found at i:80401397 original size:43 final size:42
Alignment explanation
Indices: 80401329--80401410 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
80401319 ATCAAGGATA
* *
80401329 TGGCATCGATATAAGACTTCCTGTAAGACTATAGCTGGGCTAT
1 TGGCATCGATACAAGAC-TCCTGTAAGACCATAGCTGGGCTAT
*
80401372 TGGCATCGATACAAGA-TCACATGTAAGACCATATCTGGG
1 TGGCATCGATACAAGACTC-C-TGTAAGACCATAGCTGGG
80401411 ATATGCCATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 1 0.03
43 31 0.91
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (42 bp):
TGGCATCGATACAAGACTCCTGTAAGACCATAGCTGGGCTAT
Found at i:80403285 original size:28 final size:29
Alignment explanation
Indices: 80403253--80403351 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
80403243 ATAATAAGCC
*
80403253 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
80403281 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
80403309 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
80403338 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80403352 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:80407610 original size:40 final size:40
Alignment explanation
Indices: 80407508--80407659 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
80407498 AAATTGAATG
* * * * *
80407508 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
80407548 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
80407588 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
80407628 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
80407660 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 90 0.94
41 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:80407674 original size:40 final size:38
Alignment explanation
Indices: 80407504--80407681 Score: 162
Period size: 40 Copynumber: 4.5 Consensus size: 38
80407494 TGAGAAATTG
* * *
80407504 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
80407544 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
80407581 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
80407621 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
*
80407661 AATCGTGATATCCGGGTTAAG
1 AAT-GT-ATATCCGGGCTAAG
80407682 TCCCATAGGC
Statistics
Matches: 113, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 4 0.04
40 102 0.90
41 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:80409140 original size:42 final size:41
Alignment explanation
Indices: 80409062--80409216 Score: 165
Period size: 42 Copynumber: 3.7 Consensus size: 41
80409052 AATCATACCA
*
80409062 ATGCCATA-TCCCAGATATGGTCTTACATGGGATCTCATATTG
1 ATGCCATAGTCCCAGATATGGTCTTACA--CGATCTCATATTG
*
80409104 ATGCCAATAGT-CCAGCTATGGTCTTACACGATTCTCATATTG
1 ATGCC-ATAGTCCCAGATATGGTCTTACACGA-TCTCATATTG
* * * **
80409146 ATGCCAT-GTCCCAGACATGGTTTTACATGAAATCTCATAACG
1 ATGCCATAGTCCCAGATATGGTCTTACACG--ATCTCATATTG
80409188 ATGCCATA-TCCCAGATATGGTCTTACACG
1 ATGCCATAGTCCCAGATATGGTCTTACACG
80409217 TAAACTCATA
Statistics
Matches: 95, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.02
41 19 0.20
42 53 0.56
43 20 0.21
44 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (41 bp):
ATGCCATAGTCCCAGATATGGTCTTACACGATCTCATATTG
Found at i:80409225 original size:84 final size:84
Alignment explanation
Indices: 80409062--80409226 Score: 208
Period size: 84 Copynumber: 2.0 Consensus size: 84
80409052 AATCATACCA
* ** ** *
80409062 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATTGATGCCAATAGTCCAGCTATGGTC
1 ATGCCATATCCCAGACATGGTCTTACATGAAATCTCATAACGATGCCAATAGTCCAGATATGGTC
**
80409127 TTACACGATTCTCATATTG
66 TTACACGAAACTCATATTG
* *
80409146 ATGCCATGTCCCAGACATGGTTTTACATGAAATCTCATAACGATGCC-ATA-TCCCAGATATGGT
1 ATGCCATATCCCAGACATGGTCTTACATGAAATCTCATAACGATGCCAATAGT-CCAGATATGGT
80409209 CTTACACGTAAACTCATA
65 CTTACACG-AAACTCATA
80409227 ACCCTAATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 1 0.01
83 21 0.30
84 47 0.68
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACATGAAATCTCATAACGATGCCAATAGTCCAGATATGGTC
TTACACGAAACTCATATTG
Found at i:80411453 original size:27 final size:27
Alignment explanation
Indices: 80411423--80411563 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
80411413 GTGACGAAGT
80411423 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
80411450 CACCAGA-ACAGATATATGTGACAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
80411477 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
80411504 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
80411531 CACCAGAT-TAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
80411558 CACCAG
1 CACCAG
80411564 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.10
27 87 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:80411495 original size:54 final size:54
Alignment explanation
Indices: 80411423--80411563 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
80411413 GTGACGAAGT
*
80411423 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGACAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
*
80411477 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
*
80411531 CACCAGATTAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
80411564 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
Found at i:80413199 original size:26 final size:26
Alignment explanation
Indices: 80413168--80413275 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80413158 TGAAATGCCC
*
80413168 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
80413194 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80413220 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
80413246 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80413272 ATCA
1 ATCA
80413276 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80418949 original size:40 final size:39
Alignment explanation
Indices: 80418784--80418967 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80418774 AAATTGAATG
* * *
80418784 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80418824 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80418864 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80418904 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80418943 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80418968 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80418992 original size:80 final size:81
Alignment explanation
Indices: 80418824--80419012 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80418814 GCTGGAAATT
* * * *
80418824 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80418889 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80418905 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80418968 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80418984 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80419013 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80431874 original size:40 final size:39
Alignment explanation
Indices: 80431709--80431892 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80431699 AAATTGAATG
* * *
80431709 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80431749 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80431789 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80431829 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80431868 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80431893 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80431917 original size:80 final size:81
Alignment explanation
Indices: 80431749--80431937 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80431739 GCTGGAAATT
* * * *
80431749 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80431814 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80431830 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80431893 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80431909 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80431938 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80443191 original size:46 final size:46
Alignment explanation
Indices: 80443138--80443313 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80443128 TATTTGGGCA
80443138 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80443184 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80443231 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80443277 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80443314 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80443293 original size:93 final size:93
Alignment explanation
Indices: 80443134--80443305 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80443124 GGGATATTTG
* *
80443134 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80443199 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80443227 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80443292 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80443306 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80446294 original size:15 final size:15
Alignment explanation
Indices: 80446255--80446334 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80446245 GTATCTTGGG
*
80446255 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80446270 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
80446285 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
80446300 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80446315 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80446329 TTTCTT
1 TTTCTT
80446335 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80446324 original size:30 final size:30
Alignment explanation
Indices: 80446246--80446333 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
80446236 CATAGTATCG
* * *
80446246 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
80446276 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
80446306 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
80446334 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:80448298 original size:46 final size:46
Alignment explanation
Indices: 80448245--80448420 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80448235 TATTTGGGCA
80448245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80448291 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80448338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80448384 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80448421 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80448400 original size:93 final size:93
Alignment explanation
Indices: 80448241--80448412 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80448231 GGGATATTTG
* *
80448241 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80448306 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80448334 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80448399 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80448413 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80453068 original size:23 final size:23
Alignment explanation
Indices: 80453038--80453117 Score: 83
Period size: 23 Copynumber: 3.4 Consensus size: 23
80453028 GCTAATGAAC
*
80453038 AGTAAGCTCTATTGAGCTGAAAT
1 AGTAAGCTCTATCGAGCTGAAAT
* *
80453061 AGTAAGCTTTGA-CGAGCTGAATT
1 AGTAAGCTCT-ATCGAGCTGAAAT
*
80453084 AGTAAGCTC-ATACGAGCTAAAAAT
1 AGTAAGCTCTAT-CGAGCT-GAAAT
80453108 AGTAAGCTCT
1 AGTAAGCTCT
80453118 TACAAGCTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 1 0.02
23 32 0.70
24 13 0.28
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (23 bp):
AGTAAGCTCTATCGAGCTGAAAT
Found at i:80453114 original size:24 final size:24
Alignment explanation
Indices: 80453057--80453151 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
80453047 TATTGAGCTG
* *
80453057 AAATAGTAAGCT-TTGACGAGCT-G
1 AAATAGTAAGCTCAT-ACGAGCTAA
*
80453080 AATTAGTAAGCTCATACGAGCTAA
1 AAATAGTAAGCTCATACGAGCTAA
* *
80453104 AAATAGTAAGCTCTTACAAGCTAA
1 AAATAGTAAGCTCATACGAGCTAA
* *
80453128 TATATCGGTAAGCTCATACGAGCT
1 -AAAT-AGTAAGCTCATACGAGCT
80453152 GTGGTGAGTC
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
23 18 0.31
24 22 0.38
25 3 0.05
26 15 0.26
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (24 bp):
AAATAGTAAGCTCATACGAGCTAA
Found at i:80456916 original size:47 final size:47
Alignment explanation
Indices: 80456865--80457270 Score: 571
Period size: 47 Copynumber: 8.4 Consensus size: 47
80456855 TTAGGATTTT
* * *
80456865 ATGTGATGGATGTGAACATGCGTATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
80456912 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
80456959 ATGTGATGGATGTGAACATG-GTATGTGTGATAAGGCCGAATGGACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** **
80457005 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
80457056 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** * *
80457103 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
80457156 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
80457203 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
80457250 ATGTGATGAATGTGAACATGC
1 ATGTGATGAATGTGAACATGC
80457271 ATATATGAGT
Statistics
Matches: 320, Mismatches: 28, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
46 39 0.12
47 196 0.61
48 2 0.01
49 1 0.00
50 2 0.01
51 38 0.12
52 1 0.00
53 41 0.13
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:80457180 original size:100 final size:94
Alignment explanation
Indices: 80456865--80457270 Score: 582
Period size: 100 Copynumber: 4.2 Consensus size: 94
80456855 TTAGGATTTT
* * *
80456865 ATGTGATGGATGTGAACATGCGTATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
80456930 TGCGTATGTGTGATAAGGCTGAATGGCCA
66 TACATATGTGTGATAAGGCTGAATGGCCA
* *
80456959 ATGTGATGGATGTGAACATG-GTATGTGTGATAAGGCCGAATGGACAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
*
80457023 CGTATATATATGTGTGATAAGG-TAGAATGGCCA
64 C--ATACATATGTGTGATAAGGCT-GAATGGCCA
80457056 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* *
80457121 TGTATATATATATGCGTGATAAGGCTGAATGGCCA
65 -----ATACATATGTGTGATAAGGCTGAATGGCCA
80457156 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
80457221 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TACATATGTGTGATAAGGCTGAATGGCCA
80457250 ATGTGATGAATGTGAACATGC
1 ATGTGATGAATGTGAACATGC
80457271 ATATATGAGT
Statistics
Matches: 287, Mismatches: 15, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
93 39 0.14
94 66 0.23
95 1 0.00
96 1 0.00
97 46 0.16
98 41 0.14
99 1 0.00
100 91 0.32
101 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATGTGTGATAAGGCTGAATGGCCA
Found at i:80457186 original size:25 final size:25
Alignment explanation
Indices: 80457157--80457234 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
80457147 GAATGGCCAA
80457157 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
80457182 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
80457204 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
80457229 TGTGAT
1 TGTGAT
80457235 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:80457290 original size:27 final size:27
Alignment explanation
Indices: 80457252--80457304 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
80457242 AATGGCCAAT
*
80457252 GTGATGAATGTGAACATGCATATATGA
1 GTGATGAATGTGAACATGAATATATGA
80457279 GTGATGAATGTGAACATGAATATATG
1 GTGATGAATGTGAACATGAATATATG
80457305 TGGTAAGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (27 bp):
GTGATGAATGTGAACATGAATATATGA
Found at i:80457367 original size:46 final size:46
Alignment explanation
Indices: 80457300--80457390 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
80457290 GAACATGAAT
* * *
80457300 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
80457346 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
80457391 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:80457679 original size:37 final size:37
Alignment explanation
Indices: 80457534--80457678 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
80457524 GGAAATATAT
*
80457534 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80457571 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80457608 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
80457645 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
80457679 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80459190 original size:40 final size:40
Alignment explanation
Indices: 80458947--80459178 Score: 410
Period size: 40 Copynumber: 5.8 Consensus size: 40
80458937 GAGAATTGAG
*
80458947 AGTGACATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
80458987 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
80459027 AGTGATATATCCGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
80459067 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
80459107 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
80459147 GGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
80459179 ATCATGTTGG
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:80461771 original size:40 final size:40
Alignment explanation
Indices: 80461712--80461919 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
80461702 CAATTGAATG
* * * *
80461712 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
80461752 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80461792 ACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80461832 AAATCCAGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80461872 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
80461912 ATATCCGG
1 ATATCCGG
80461920 TTGTATTTCG
Statistics
Matches: 138, Mismatches: 30, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80470629 original size:40 final size:40
Alignment explanation
Indices: 80470521--80470730 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80470511 CGGGATTTAA
* * * * *
80470521 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80470561 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470601 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470641 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470681 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470721 CCGGATATAT
1 CCGGATATAT
80470731 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80477229 original size:79 final size:80
Alignment explanation
Indices: 80477065--80477249 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
80477055 AATTGAATGA
* * *
80477065 TATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
80477130 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
* * *
80477146 -ATCCGGGCTAAGT-CCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
80477208 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
* *
80477224 TATCCGGGCTAAGACCCGAAGGCATT
1 TATCCGGGCTAAGTCCCGAAGACATT
80477250 TGTGCAAATC
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 5 0.06
79 61 0.69
80 22 0.25
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:80477269 original size:40 final size:39
Alignment explanation
Indices: 80477103--80477256 Score: 143
Period size: 40 Copynumber: 3.9 Consensus size: 39
80477093 TGCTGGAAAT
* * *
80477103 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CA
* * * * *
80477143 TACATCCGGGCTAAG-TCCG-AGGACATTTATGCTAGTAA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCA
* *
80477181 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
*
80477221 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
80477257 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 28 0.30
40 60 0.64
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
Found at i:80478977 original size:14 final size:14
Alignment explanation
Indices: 80478960--80478993 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80478950 TTATTATAGG
* *
80478960 TTAGGATTTATGGT
1 TTAGGATTTAAGCT
80478974 TTAGGATTTAAGCT
1 TTAGGATTTAAGCT
80478988 TTAGGA
1 TTAGGA
80478994 GTTACTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (14 bp):
TTAGGATTTAAGCT
Found at i:80479045 original size:7 final size:7
Alignment explanation
Indices: 80479002--80479143 Score: 61
Period size: 7 Copynumber: 20.0 Consensus size: 7
80478992 GAGTTACTAT
*
80479002 TTTAAGG
1 TTTATGG
80479009 TTTATGG
1 TTTATGG
* *
80479016 ATTATCAG
1 TTTAT-GG
*
80479024 TTTAGGG
1 TTTATGG
*
80479031 ATTATGG
1 TTTATGG
80479038 TTTATGG
1 TTTATGG
*
80479045 TATATGG
1 TTTATGG
*
80479052 TTTAAGG
1 TTTATGG
* **
80479059 GTTGGGG
1 TTTATGG
*
80479066 TTTAAGG
1 TTTATGG
*
80479073 TTTAGGG
1 TTTATGG
*
80479080 GTTA-GG
1 TTTATGG
* *
80479086 CATTAAGG
1 -TTTATGG
*
80479094 GTTATGGG
1 TTTAT-GG
*
80479102 TTTGTGG
1 TTTATGG
80479109 TTTATGG
1 TTTATGG
*
80479116 TTTATGT
1 TTTATGG
**
80479123 TTTATAA
1 TTTATGG
*
80479130 TTTAGGG
1 TTTATGG
80479137 TTTATGG
1 TTTATGG
80479144 GGATAGGGGT
Statistics
Matches: 98, Mismatches: 33, Indels: 8
0.71 0.24 0.06
Matches are distributed among these distances:
6 2 0.02
7 85 0.87
8 11 0.11
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.46
Consensus pattern (7 bp):
TTTATGG
Found at i:80479556 original size:21 final size:21
Alignment explanation
Indices: 80479530--80479576 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
80479520 TTAGGGTGTA
*
80479530 GGTTTATGGTCTAGGATTTAG
1 GGTTTATGGACTAGGATTTAG
*
80479551 GGTTTATGGACTAGGATTTGG
1 GGTTTATGGACTAGGATTTAG
80479572 GGTTT
1 GGTTT
80479577 GGTATTTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.36, T:0.43
Consensus pattern (21 bp):
GGTTTATGGACTAGGATTTAG
Found at i:80480416 original size:41 final size:42
Alignment explanation
Indices: 80480371--80480480 Score: 134
Period size: 41 Copynumber: 2.6 Consensus size: 42
80480361 AAAAAAAATC
* *
80480371 AAAATTGAGCAATAGTGGCGTTTTTGG-ACAAAACGC-CACAA
1 AAAATTGAGCTATAGTGGCATTTTTGGCA-AAAACGCTCACAA
* ***
80480412 AAAATTGAGCTATAGTGGCATTTTTAGCAAAAACGCTGTTAA
1 AAAATTGAGCTATAGTGGCATTTTTGGCAAAAACGCTCACAA
*
80480454 AAAATTGAGCTATAATGGCATTTTTGG
1 AAAATTGAGCTATAGTGGCATTTTTGG
80480481 TGAACTGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
41 31 0.53
42 28 0.47
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (42 bp):
AAAATTGAGCTATAGTGGCATTTTTGGCAAAAACGCTCACAA
Found at i:80484028 original size:40 final size:40
Alignment explanation
Indices: 80483973--80484154 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
80483963 TATTCGGATG
* *
80483973 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CT
*
80484013 ATATCCGGGCGAAGTCCCGAAGGCGTTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCT
* *
80484053 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CT
*
80484093 ATATCCGGGCTAAGACCCGAAGGCGTTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCT
*
80484133 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80484155 TACTTGAGTT
Statistics
Matches: 128, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
39 16 0.12
40 108 0.84
41 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCT
Found at i:80484112 original size:80 final size:80
Alignment explanation
Indices: 80483973--80484154 Score: 321
Period size: 80 Copynumber: 2.3 Consensus size: 80
80483963 TATTCGGATG
*
80483973 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCG
80484038 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
80484053 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCG
80484118 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
80484133 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80484155 TACTTGAGTT
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 15 0.15
80 83 0.85
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCG
TTTGTGCGAGTTGCT
Found at i:80485595 original size:14 final size:14
Alignment explanation
Indices: 80485576--80485607 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
80485566 AATATGGTAT
80485576 TAATATCATATACA
1 TAATATCATATACA
80485590 TAATATCATATACA
1 TAATATCATATACA
80485604 TAAT
1 TAAT
80485608 CTCGACTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (14 bp):
TAATATCATATACA
Found at i:80493332 original size:39 final size:40
Alignment explanation
Indices: 80493227--80493434 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
80493217 TATTCAAATG
* * * *
80493227 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAATGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
80493268 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
80493308 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
80493347 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
80493387 ATAACCGGGCTATGTCCCGAAGCCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
80493427 ATATCCGG
1 ATATCCGG
80493435 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 37 0.26
40 79 0.54
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:80493367 original size:79 final size:79
Alignment explanation
Indices: 80493227--80493448 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 79
80493217 TATTCAAATG
* * * * **
80493227 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAATGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
80493292 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
80493308 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
80493371 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * * *
80493387 ATAACCGGGCTATGTCCCGAAGCCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
80493449 TATGTGATTC
Statistics
Matches: 120, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 63 0.52
80 44 0.37
81 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:80496093 original size:50 final size:50
Alignment explanation
Indices: 80496016--80496204 Score: 293
Period size: 50 Copynumber: 3.9 Consensus size: 50
80496006 GTCATGTTCT
* * *
80496016 TTAGCGGCTTTTGTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGG
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
80496066 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
80496116 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGC--
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
*
80496164 -T----GCGTTTGTGGGAAAAGCGCCGCTAAAGTTCATGTTCTTTA
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTA
80496205 ACGGAGTTTT
Statistics
Matches: 135, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
43 39 0.29
47 1 0.01
50 95 0.70
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (50 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
Found at i:80496177 original size:43 final size:43
Alignment explanation
Indices: 80496116--80496213 Score: 160
Period size: 43 Copynumber: 2.3 Consensus size: 43
80496106 TCTTTAGCGG
80496116 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
* *
80496159 TTAGCTGCGTTTGTGGGAAAAGCGCCGCTAAAGTTCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
* *
80496202 TTAACGGAGTTT
1 TTAGCGGCGTTT
80496214 TTTTTACATA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
Found at i:80503433 original size:26 final size:26
Alignment explanation
Indices: 80503395--80503453 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
80503385 GCCATTAGGG
*
80503395 TGTAGCAGGCTTTG-GATCGGTGTATA
1 TGTAGCAAGCTTTGTG-TCGGTGTATA
* *
80503421 TTTAGCAAGCTTTGTGTCTGTGTATA
1 TGTAGCAAGCTTTGTGTCGGTGTATA
80503447 TGTAGCA
1 TGTAGCA
80503454 GACTTAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (26 bp):
TGTAGCAAGCTTTGTGTCGGTGTATA
Found at i:80506713 original size:144 final size:142
Alignment explanation
Indices: 80506455--80506927 Score: 460
Period size: 144 Copynumber: 3.3 Consensus size: 142
80506445 GTGAATTACC
* ** * * *
80506455 GATGCCATACTCC-AAACATGGTCTTATGCTGGCTCACATGTTGA-GGCTGATGCCATG-TCCTA
1 GATGCCAT-GTCCTAAACATGGTCTTACACTGGCTCTCAT-ATCATGGCTGATGCCATGTTCC-A
* * *
80506517 GACATGGTCTTACACTAGCTCTCTTCTCAATGCCGATGCCATGTCCCAGACATGGTATTACACTA
63 AACATGGTCTTACACTAGCTCTCAT-TC-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
* * *
80506582 GCGCACATATCAATGCC
126 GCTCTCATATCAATGCT
* * *
80506599 GATGCCATGTCCTAGACATAGTCTTACACTGGCTCTCAT-TACATTGCTGATGCCATGTTCCAAA
1 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAT-CATGGCTGATGCCATGTTCCAAA
* * * *
80506663 CATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATGTCCCGGACATGGTCTTAGACTAGC
65 CATGGTCTTACACTAGCTCTCAT-TCAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
* *
80506728 TCTCAT-TACATTGTT
128 TCTCATAT-CAATGCT
* ** * *
80506743 GATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATATCCCATAT
1 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTTCCA-A-
* * * *
80506808 AC-T-GTCTTACACTAGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTCTTACACTGG
64 ACATGGTCTTACACTAGCTCTCATT-CA-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
*
80506871 CTCTCATATC-GTGGCT
127 CTCTCATATCAAT-GCT
*
80506887 GATGCCATGTCCCAAACATGGTCTTACACTGG-TGCTCATAT
1 GATGCCATGTCCTAAACATGGTCTTACACTGGCT-CTCATAT
80506928 TACCCAAGTG
Statistics
Matches: 274, Mismatches: 41, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
142 1 0.00
143 10 0.04
144 253 0.92
145 8 0.03
146 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (142 bp):
GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCTCATTCATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT
CATATCAATGCT
Found at i:80506917 original size:48 final size:48
Alignment explanation
Indices: 80506466--80506927 Score: 413
Period size: 48 Copynumber: 9.6 Consensus size: 48
80506456 ATGCCATACT
** * * *
80506466 CCAAACATGGTCTTATGCTGGCTCACATGTTGA-GGCTGATGCCATGTC
1 CCAAACATGGTCTTACACTGGCTCTCAT-ATCATGGCTGATGCCATGTC
* * * * * *
80506514 CTAGACATGGTCTTACACTAGCTCTCTTCTCAAT-GCCGATGCCATGTC
1 CCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCTGATGCCATGTC
* * * * * *
80506562 CCAGACATGGTATTACACTAGCGCACATATCAAT-GCCGATGCCATGTC
1 CCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCTGATGCCATGTC
* * * * *
80506610 CTAGACATAGTCTTACACTGGCTCTCAT-TACATTGCTGATGCCATGTT
1 CCAAACATGGTCTTACACTGGCTCTCATAT-CATGGCTGATGCCATGTC
**
80506658 CCAAACATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATGTC
1 CCAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTC
** * * * * *
80506706 CCGGACATGGTCTTAGACTAGCTCTCAT-TACATTGTTGATGCCATGTT
1 CCAAACATGGTCTTACACTGGCTCTCATAT-CATGGCTGATGCCATGTC
* ** *
80506754 CTAAACATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATATC
1 CCAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTC
* * *
80506802 CCATATAC-T-GTCTTACACTAGCTCTCAT-TACATTG-TCGATGCCATGTT
1 CCA-A-ACATGGTCTTACACTGGCTCTCATAT-CATGGCT-GATGCCATGTC
*
80506850 CCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTC
1 CCAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTC
80506898 CCAAACATGGTCTTACACTGG-TGCTCATAT
1 CCAAACATGGTCTTACACTGGCT-CTCATAT
80506928 TACCCAAGTG
Statistics
Matches: 336, Mismatches: 62, Indels: 32
0.78 0.14 0.07
Matches are distributed among these distances:
46 2 0.01
47 9 0.03
48 317 0.94
49 6 0.02
50 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (48 bp):
CCAAACATGGTCTTACACTGGCTCTCATATCATGGCTGATGCCATGTC
Found at i:80506925 original size:96 final size:96
Alignment explanation
Indices: 80506454--80506916 Score: 549
Period size: 96 Copynumber: 4.8 Consensus size: 96
80506444 GGTGAATTAC
** ** * * * * *
80506454 CGATGCCATACTCCAAACATGGTCTTATGCTGGCTCACATGTTGA-GGCTGATGCCATGTCCTAG
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCATGGCCGATGCCATGTCCCAG
* * *
80506518 ACATGGTCTTACACTAGCTCTC-TTCTCAATGC
65 ACATGGTCTTACACTAGCTCTCATT-ACATTGT
* * * * * * *
80506550 CGATGCCATGTCCCAGACATGGTATTACACTAGCGCACATATCAAT-GCCGATGCCATGTCCTAG
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCGATGCCATGTCCCAG
* *
80506614 ACATAGTCTTACACTGGCTCTCATTACATTG-
65 ACATGGTCTTACACTAGCTCTCATTACATTGT
* *
80506645 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATGTCCCGG
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAG
*
80506710 ACATGGTCTTAGACTAGCTCTCATTACATTGT
65 ACATGGTCTTACACTAGCTCTCATTACATTGT
* * * * *
80506742 TGATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATATCATGGCCAATGCCATATCCCATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGA
*
80506807 TACT-GTCTTACACTAGCTCTCATTACATTGT
66 CA-TGGTCTTACACTAGCTCTCATTACATTGT
* * *
80506838 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTCCCAAA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGA
80506903 CATGGTCTTACACT
66 CATGGTCTTACACT
80506917 GGTGCTCATA
Statistics
Matches: 316, Mismatches: 43, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
95 5 0.02
96 308 0.97
97 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATTACATTGT
Found at i:80510571 original size:21 final size:21
Alignment explanation
Indices: 80510547--80510590 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
80510537 ACAATTTGAG
*
80510547 CACACGGGCATGTAGAGTAGC
1 CACACGGACATGTAGAGTAGC
*
80510568 CACACGGACATGTAGGGTAGC
1 CACACGGACATGTAGAGTAGC
80510589 CA
1 CA
80510591 TGCAACCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.25, G:0.32, T:0.14
Consensus pattern (21 bp):
CACACGGACATGTAGAGTAGC
Found at i:80513542 original size:17 final size:18
Alignment explanation
Indices: 80513520--80513557 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
80513510 TTTAATTAAA
*
80513520 ATTATTTATAT-AGTAAT
1 ATTATTTATATCAGCAAT
*
80513537 ATTATTTTTATCAGCAAT
1 ATTATTTATATCAGCAAT
80513555 ATT
1 ATT
80513558 TAATTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTATTTATATCAGCAAT
Found at i:80517376 original size:18 final size:18
Alignment explanation
Indices: 80517355--80517393 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
80517345 GTAATATTTG
80517355 GAAGATTGACAATTTATT
1 GAAGATTGACAATTTATT
80517373 GAAGATTGACAATTTATT
1 GAAGATTGACAATTTATT
80517391 GAA
1 GAA
80517394 CCGAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (18 bp):
GAAGATTGACAATTTATT
Found at i:80519673 original size:13 final size:14
Alignment explanation
Indices: 80519654--80519690 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
80519644 AAATAGGAAG
80519654 ATATTATTTTTTTT
1 ATATTATTTTTTTT
80519668 -TATTATTTTTTTT
1 ATATTATTTTTTTT
*
80519681 ATTTTATTTT
1 ATATTATTTT
80519691 ATTAATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
ATATTATTTTTTTT
Found at i:80519685 original size:17 final size:16
Alignment explanation
Indices: 80519655--80519693 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
80519645 AATAGGAAGA
80519655 TATTATTTTTTTTTAT
1 TATTATTTTTTTTTAT
*
80519671 TATTTTTTTTATTTTAT
1 TATTATTTTT-TTTTAT
80519688 T-TTATT
1 TATTATT
80519694 AATTTAGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TATTATTTTTTTTTAT
Found at i:80521946 original size:12 final size:12
Alignment explanation
Indices: 80521929--80521955 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80521919 CGTTTTAGAA
80521929 TTCGAGCAGGAC
1 TTCGAGCAGGAC
80521941 TTCGAGCAGGAC
1 TTCGAGCAGGAC
80521953 TTC
1 TTC
80521956 TTTTTTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (12 bp):
TTCGAGCAGGAC
Found at i:80522301 original size:49 final size:49
Alignment explanation
Indices: 80522248--80522349 Score: 168
Period size: 49 Copynumber: 2.1 Consensus size: 49
80522238 TTAATATATG
*
80522248 TTAGTACATTTAGGTTTATTTTTTCCTTATTGCACTATCCTTTGTTTAC
1 TTAGTACATTTAGGTTTATTTTCTCCTTATTGCACTATCCTTTGTTTAC
* * *
80522297 TTAGTACATTTATGTTTATTTTCTCCTTATTGCACTCTCTTTTGTTTAC
1 TTAGTACATTTAGGTTTATTTTCTCCTTATTGCACTATCCTTTGTTTAC
80522346 TTAG
1 TTAG
80522350 GGTGGGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.18, C:0.17, G:0.10, T:0.56
Consensus pattern (49 bp):
TTAGTACATTTAGGTTTATTTTCTCCTTATTGCACTATCCTTTGTTTAC
Found at i:80524729 original size:42 final size:42
Alignment explanation
Indices: 80524616--80524772 Score: 208
Period size: 42 Copynumber: 3.7 Consensus size: 42
80524606 AGTATCGTAC
* * **
80524616 CAATGTCATATCCCAGATATGGTCTTACATGTAA-TCTCGCAT
1 CAATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATAT
* * *
80524658 CGATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAT
* *
80524701 CAATGTCATATCCTAGATATGGTCTTACACGAAGTCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
80524743 CAATGCCATATCCCAGATATGGTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
80524773 ATAATCTCAG
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 67 0.68
43 32 0.32
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
Found at i:80524749 original size:85 final size:84
Alignment explanation
Indices: 80524616--80524772 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
80524606 AGTATCGTAC
* * * *
80524616 CAATGTCATATCCCAGATATGGTCTTACATGTAATCTCGCATCGATGCCAATAGCCCAGCTATGG
1 CAATGTCATATCCCAGATATGGTCTTACACGTAATCTCACATCAATGCC-ATAGCCCAGATATGG
80524681 TCTTACACGAAGTCTCATAT
65 TCTTACACGAAGTCTCATAT
* * *
80524701 CAATGTCATATCCTAGATATGGTCTTACACG-AAGTCTCATATCAATGCCATATCCCAGATATGG
1 CAATGTCATATCCCAGATATGGTCTTACACGTAA-TCTCACATCAATGCCATAGCCCAGATATGG
80524765 TCTTACAC
65 TCTTACAC
80524773 ATAATCTCAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 23 0.36
85 41 0.64
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
CAATGTCATATCCCAGATATGGTCTTACACGTAATCTCACATCAATGCCATAGCCCAGATATGGT
CTTACACGAAGTCTCATAT
Found at i:80535394 original size:52 final size:52
Alignment explanation
Indices: 80535304--80535410 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
80535294 AAGCCTCCTT
* *
80535304 TACCGTGGTTTTTCCCTTTTTGAGGGTTTTTCACGTAAAATATTTGTGTTCA
1 TACCGTGGTTTTTCCCTTTTTGAGGATTTTGCACGTAAAATATTTGTGTTCA
*
80535356 TACCGTGGTTTTT-CCTTATTTGAGGATTTTGCATGTAAAATATTTGTGTTCA
1 TACCGTGGTTTTTCCCTT-TTTGAGGATTTTGCACGTAAAATATTTGTGTTCA
80535408 TAC
1 TAC
80535411 TTCACTTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
51 4 0.08
52 47 0.92
ACGTcount: A:0.20, C:0.14, G:0.19, T:0.48
Consensus pattern (52 bp):
TACCGTGGTTTTTCCCTTTTTGAGGATTTTGCACGTAAAATATTTGTGTTCA
Found at i:80542478 original size:10 final size:10
Alignment explanation
Indices: 80542463--80542495 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
80542453 TTTTAAAAAT
*
80542463 ATTTTTTATA
1 ATTTTTTAAA
80542473 ATTTTTTAAA
1 ATTTTTTAAA
80542483 A-TTTTTAAA
1 ATTTTTTAAA
80542492 ATTT
1 ATTT
80542496 AAAAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:80549818 original size:49 final size:50
Alignment explanation
Indices: 80549751--80549879 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
80549741 TCAAGTTGAT
* *
80549751 GCCATGGCCCAGACATGGTCTTACATTGACTATTG-GA-AT-CGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACATTGACT-TTGACATATCCG-GGCCGAC
* * **
80549800 GCCATGTCCCAGACATGGTCTTACACT-AGCTTTGACATATCCGTGCCGGT
1 GCCATGTCCCAGACATGGTCTTACATTGA-CTTTGACATATCCGGGCCGAC
80549850 GCCATGTCCCAGACATGGTCTTACATTGAC
1 GCCATGTCCCAGACATGGTCTTACATTGAC
80549880 ACATCTCATA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
48 4 0.06
49 28 0.41
50 33 0.49
51 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATTGACTTTGACATATCCGGGCCGAC
Found at i:80549944 original size:46 final size:46
Alignment explanation
Indices: 80549698--80550022 Score: 209
Period size: 46 Copynumber: 6.9 Consensus size: 46
80549688 AGGGTATAAT
*
80549698 GCCGATGCCATATCCCAGACATGGTCTTACACTGGC-T-CATCCATCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCAA
** * * * * *
80549745 GTTGATGCCATGGCCCAGACATGGTCTTACATTGACTATTGGA-ATC-GAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGC--TT--ACATCTCAA
* * * **
80549794 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTTTGACATATCCGT
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGC-TT-ACATCT-CAA
* * *
80549844 GCCGGTGCCATGTCCCAGACATGGTCTTACATTGAC--ACATCTCATA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA-A
*
80549890 GCCGATGCATGTACCAGACAT-GTCTTACACTGGCTTACATCTCGAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AA
* * * * *
80549936 GGCGATGCATGTCCCAGACAT-CTCTTACATTGGCACT-CGTCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCAA
* *
80549981 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTTACA
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACA
80550023 ATAACCCATA
Statistics
Matches: 215, Mismatches: 45, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
44 11 0.05
45 16 0.07
46 59 0.27
47 49 0.23
48 15 0.07
49 30 0.14
50 32 0.15
51 1 0.00
52 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA
Found at i:80552464 original size:12 final size:12
Alignment explanation
Indices: 80552447--80552474 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
80552437 ATTATATTGT
80552447 CCCTTGTATGGG
1 CCCTTGTATGGG
80552459 CCCTTGTATGGG
1 CCCTTGTATGGG
80552471 CCCT
1 CCCT
80552475 CGAGGCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.32, G:0.29, T:0.32
Consensus pattern (12 bp):
CCCTTGTATGGG
Found at i:80552541 original size:22 final size:20
Alignment explanation
Indices: 80552516--80552556 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
80552506 AGGACTCAAT
80552516 CGAAATTTCAAAGAATTTTTCG
1 CGAAATTTC-AA-AATTTTTCG
80552538 CGAAATTTCAAAATTTTTC
1 CGAAATTTCAAAATTTTTC
80552557 CTAAGTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 9 0.47
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (20 bp):
CGAAATTTCAAAATTTTTCG
Found at i:80556016 original size:25 final size:25
Alignment explanation
Indices: 80555983--80556061 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
80555973 GATTACTTGG
* *
80555983 AAAGGCTTTGTGGCT-AATTTTATGA
1 AAAGCCTTTGTGG-TGAATTATATGA
*
80556008 AAAGCCTTTGTGGTGTATTATATGA
1 AAAGCCTTTGTGGTGAATTATATGA
* *
80556033 AAAGCCTTTGTGGTGTATTGTATGA
1 AAAGCCTTTGTGGTGAATTATATGA
80556058 AAAG
1 AAAG
80556062 ACTGTATGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 48 0.98
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (25 bp):
AAAGCCTTTGTGGTGAATTATATGA
Found at i:80556439 original size:27 final size:27
Alignment explanation
Indices: 80556408--80556461 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
80556398 GGAGACTCAG
80556408 TCAAAAAGTGGTACCCATAGGAATATT
1 TCAAAAAGTGGTACCCATAGGAATATT
* *
80556435 TCAAAGAGTGGTACCTATAGGAATATT
1 TCAAAAAGTGGTACCCATAGGAATATT
80556462 ACCTTAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (27 bp):
TCAAAAAGTGGTACCCATAGGAATATT
Found at i:80558498 original size:91 final size:89
Alignment explanation
Indices: 80558314--80558639 Score: 397
Period size: 89 Copynumber: 3.6 Consensus size: 89
80558304 TTAAAGGTGT
* **
80558314 AAAAAGCCCTCAAACTTTTTTTTTAAAAAAGCAATTAAGCCCTTTCTCTTTTTTTTTCTTGCACT
1 AAAAAACCCTCAAAC--TTTTTCAAAAAAAGCAATTAAGCCC---CTCTTTTTTTTT-TTGCACT
* *
80558379 CAATTGGGAACATGAACTTTCAAAATGCATA
60 CAATTGGGTACTTGAA-TTTCAAAATGCATA
*
80558410 AAAAAGGCCCTCAAACTTTTTCAAAAAAAGCAATTAA-CCCCTACTTTTTTTTTTTGCACTCAAT
1 AAAAA-ACCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCT-CTTTTTTTTTTTGCACTCAAT
80558474 TGGGTACTTGAATTGTCAAAATGCATA
64 TGGGTACTTGAATT-TCAAAATGCATA
* ** *
80558501 AAAAAACCCTCAAAATTTTTCAAAAAAAGCAATTAAGCCCC-CCCTTTTTTTTTGCATTCAATTG
1 AAAAAACCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCTCTTTTTTTTTTTGCACTCAATTG
* *
80558565 GGTACTTGAATTATTAAAAGGCATA
66 GGTACTTGAATT-TCAAAATGCATA
**
80558590 AAAAAACCCT-AATTTTTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTT
1 AAAAAACCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCT-CTTTTTTT
80558640 ACACTAAATT
Statistics
Matches: 208, Mismatches: 16, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
88 28 0.13
89 52 0.25
90 37 0.18
91 44 0.21
92 10 0.05
94 3 0.01
95 19 0.09
96 5 0.02
97 10 0.05
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (89 bp):
AAAAAACCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCTCTTTTTTTTTTTGCACTCAATTG
GGTACTTGAATTTCAAAATGCATA
Found at i:80558819 original size:11 final size:10
Alignment explanation
Indices: 80558797--80558926 Score: 51
Period size: 10 Copynumber: 13.3 Consensus size: 10
80558787 AAAAATCAAT
80558797 AAAAATTATA
1 AAAAATTATA
80558807 AAAAATTACT-
1 AAAAATTA-TA
*
80558817 -AAACTT-TA
1 AAAAATTATA
*
80558825 ATAAAAATATAA
1 A-AAAATTAT-A
*
80558837 AAAAATTATTT
1 AAAAATTA-TA
*
80558848 AAAATTTACTA
1 AAAAATTA-TA
*
80558859 AAAAA-TA-G
1 AAAAATTATA
*
80558867 AAAATTTAT-
1 AAAAATTATA
* **
80558876 ATAAATCGTA
1 AAAAATTATA
80558886 AAAAA-TATA
1 AAAAATTATA
**
80558895 AAATTTTAT-
1 AAAAATTATA
*
80558904 AAAAATCATA
1 AAAAATTATA
80558914 AAAAATTATA
1 AAAAATTATA
80558924 AAA
1 AAA
80558927 TGCATAAAAA
Statistics
Matches: 84, Mismatches: 24, Indels: 24
0.64 0.18 0.18
Matches are distributed among these distances:
7 1 0.01
8 4 0.05
9 23 0.27
10 33 0.39
11 20 0.24
12 3 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:80558841 original size:30 final size:31
Alignment explanation
Indices: 80558794--80558880 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 31
80558784 AATAAAAATC
*
80558794 AATAAAAAT-TATAAAAAATTA-CTAAACTTT
1 AATAAAAATATA-AAAAAATTATCTAAAATTT
*
80558824 AATAAAAATATAAAAAAATTATTTAAAATTT
1 AATAAAAATATAAAAAAATTATCTAAAATTT
* * * *
80558855 ACTAAAAA-ATAGAAAATTTATATAAA
1 AATAAAAATATAAAAAAATTATCTAAA
80558881 TCGTAAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 33 0.67
31 16 0.33
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (31 bp):
AATAAAAATATAAAAAAATTATCTAAAATTT
Found at i:80558897 original size:27 final size:27
Alignment explanation
Indices: 80558857--80558936 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 27
80558847 TAAAATTTAC
* * *
80558857 TAAAAAATAGAAAATTTATATAAATCG
1 TAAAAAATATAAAATTTATAAAAATCA
80558884 TAAAAAATATAAAATTTTATAAAAATCA
1 TAAAAAATATAAAA-TTTATAAAAATCA
**
80558912 TAAAAAATTATAAAATGCATAAAAA
1 TAAAAAA-TATAAAATTTATAAAAA
80558937 ATGCCCTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 13 0.28
28 26 0.57
29 7 0.15
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (27 bp):
TAAAAAATATAAAATTTATAAAAATCA
Found at i:80558902 original size:28 final size:28
Alignment explanation
Indices: 80558857--80558927 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
80558847 TAAAATTTAC
* * *
80558857 TAAAAAATAGAAAA-TTTATATAAATCG
1 TAAAAAATATAAAATTTTATAAAAATCA
80558884 TAAAAAATATAAAATTTTATAAAAATCA
1 TAAAAAATATAAAATTTTATAAAAATCA
80558912 TAAAAAATTATAAAAT
1 TAAAAAA-TATAAAAT
80558928 GCATAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 13 0.33
28 18 0.46
29 8 0.21
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (28 bp):
TAAAAAATATAAAATTTTATAAAAATCA
Found at i:80558906 original size:19 final size:20
Alignment explanation
Indices: 80558884--80558938 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
80558874 ATATAAATCG
**
80558884 TAAAAAAT-ATAAAATTTTA
1 TAAAAAATCATAAAAAATTA
80558903 T-AAAAATCATAAAAAATTA
1 TAAAAAATCATAAAAAATTA
80558922 T--AAAATGCATAAAAAAT
1 TAAAAAAT-CATAAAAAAT
80558939 GCCCTTTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 11 0.34
19 21 0.66
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
TAAAAAATCATAAAAAATTA
Found at i:80559144 original size:22 final size:22
Alignment explanation
Indices: 80559116--80559161 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
80559106 GGTATAACAA
80559116 TTTTTATAATTATT-TTACGAAT
1 TTTTTATAATT-TTCTTACGAAT
*
80559138 TTTTTATCATTTTCTTACGAAT
1 TTTTTATAATTTTCTTACGAAT
80559160 TT
1 TT
80559162 ATAAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (22 bp):
TTTTTATAATTTTCTTACGAAT
Found at i:80559211 original size:29 final size:29
Alignment explanation
Indices: 80559159--80559240 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
80559149 TTCTTACGAA
* *
80559159 TTTATAAAATTTTGTATATTTTTTTCTATAT
1 TTTATAAAATTTTATA-ATTTTTTACTAT-T
*
80559190 TTCTAT-ATATTTTATAATTTTTTACTATT
1 TT-TATAAAATTTTATAATTTTTTACTATT
*
80559219 TTTATAAAATTTTACAATTTTT
1 TTTATAAAATTTTATAATTTTT
80559241 ATAATCTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 3 0.07
29 17 0.39
30 11 0.25
31 10 0.23
32 3 0.07
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (29 bp):
TTTATAAAATTTTATAATTTTTTACTATT
Found at i:80559221 original size:19 final size:19
Alignment explanation
Indices: 80559115--80559264 Score: 72
Period size: 19 Copynumber: 7.5 Consensus size: 19
80559105 TGGTATAACA
*
80559115 ATTTTTATAATTATTTTACGA
1 ATTTTTATAATT-TTTTAC-T
* *
80559136 ATTTTTTATCATTTTCTTACGA
1 A-TTTTTATAATTTT-TTAC-T
* * *
80559158 ATTTATAAAATTTTGTA-T
1 ATTTTTATAATTTTTTACT
* * *
80559176 ATTTTTTTCTATATTTCTA-T
1 ATTTTTAT-AAT-TTTTTACT
80559196 ATATTTTATAATTTTTTACT
1 AT-TTTTATAATTTTTTACT
** *
80559216 ATTTTTATAAAATTTTACA
1 ATTTTTATAATTTTTTACT
*
80559235 ATTTTTATAATCTTTT-CT
1 ATTTTTATAATTTTTTACT
80559253 AATTTTTGATAA
1 -ATTTTT-ATAA
80559265 AAATTAAATA
Statistics
Matches: 101, Mismatches: 20, Indels: 17
0.73 0.14 0.12
Matches are distributed among these distances:
18 6 0.06
19 41 0.41
20 19 0.19
21 18 0.18
22 17 0.17
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.60
Consensus pattern (19 bp):
ATTTTTATAATTTTTTACT
Found at i:80559250 original size:10 final size:9
Alignment explanation
Indices: 80559199--80559264 Score: 53
Period size: 10 Copynumber: 6.9 Consensus size: 9
80559189 TTTCTATATA
80559199 TTTTATAAT
1 TTTTATAAT
80559208 TTTT-TACTAT
1 TTTTATA--AT
*
80559218 TTTTATAAAA
1 TTTTAT-AAT
*
80559228 TTTTACAAT
1 TTTTATAAT
80559237 TTTTATAAT
1 TTTTATAAT
*
80559246 CTTTTCTAAT
1 -TTTTATAAT
80559256 TTTTGATAA
1 TTTT-ATAA
80559265 AAATTAAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
8 2 0.04
9 18 0.40
10 23 0.51
11 1 0.02
12 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:80559579 original size:94 final size:94
Alignment explanation
Indices: 80559480--80559665 Score: 241
Period size: 94 Copynumber: 2.0 Consensus size: 94
80559470 TTGAGTGCAA
* ** *
80559480 AAAAACAAACA-A-ACAAGGGTTTAATTGCTTTTTTGAAAAAGTTTGAGAGCCTTTTTTATGCAT
1 AAAAACAAA-AGACACAAGGGCTTAATTGCGATTTTGAAAAAGTTTGAGAGCC-TTATTATGCAT
**
80559543 TTTGGCAGTTCAAGTACCCAATTAAGTGCGC
64 TTTGAAAGTTCAAGTACCCAATTAAGTGCGC
* * *
80559574 AAAAACAAAAGACACAGGGGCTTAATTGCGATTTTGAATAAGTTTGAGATCCTTATTATGCATTT
1 AAAAACAAAAGACACAAGGGCTTAATTGCGATTTTGAAAAAGTTTGAGAGCCTTATTATGCATTT
* *
80559639 TGAAATTTCAAGTATCCAATTAAGTGC
66 TGAAAGTTCAAGTACCCAATTAAGTGC
80559666 AAAAAGAATC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 45 0.57
95 33 0.42
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (94 bp):
AAAAACAAAAGACACAAGGGCTTAATTGCGATTTTGAAAAAGTTTGAGAGCCTTATTATGCATTT
TGAAAGTTCAAGTACCCAATTAAGTGCGC
Found at i:80560404 original size:180 final size:180
Alignment explanation
Indices: 80560097--80560459 Score: 681
Period size: 180 Copynumber: 2.0 Consensus size: 180
80560087 AACATTTCCT
*
80560097 ACCATTTGAACTAAATCATTCAAAATGGACTTAAAACTAACTCAAGACCTTAGATACATATCAAT
1 ACCATTTGAACTAAATCATTCAAAATGGACTTAAAACTAAATCAAGACCTTAGATACATATCAAT
* * *
80560162 TGATATAAACATAAAAAAATCTATACCAACTTTGCAGAGTCAAGATTTGGGTCCTGGATGTTGTT
66 TAATATAAACATAAAAAAATCTATACCAACTTTACAGAGTCAAGATTTGGGTCCTAGATGTTGTT
80560227 CTCTTTGAAACCTCAAAACCTAACGATACTTGCGCATGGAAATAAACAAA
131 CTCTTTGAAACCTCAAAACCTAACGATACTTGCGCATGGAAATAAACAAA
80560277 ACCATTTGAACTAAATCATTCAAAATGGACTTAAAACTAAATCAAGACCTTAGATACATATCAAT
1 ACCATTTGAACTAAATCATTCAAAATGGACTTAAAACTAAATCAAGACCTTAGATACATATCAAT
*
80560342 TAATATAAACATAAAAAAATCTATACCAACTTTACAGAGTCGAGATTTGGGTCCTAGATGTTGTT
66 TAATATAAACATAAAAAAATCTATACCAACTTTACAGAGTCAAGATTTGGGTCCTAGATGTTGTT
80560407 CTCTTTGAAACCTCAAAACCTAACGATACTTGCGCATGGAAATAAACAAA
131 CTCTTTGAAACCTCAAAACCTAACGATACTTGCGCATGGAAATAAACAAA
80560457 ACC
1 ACC
80560460 GTATGCTGAG
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 178 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (180 bp):
ACCATTTGAACTAAATCATTCAAAATGGACTTAAAACTAAATCAAGACCTTAGATACATATCAAT
TAATATAAACATAAAAAAATCTATACCAACTTTACAGAGTCAAGATTTGGGTCCTAGATGTTGTT
CTCTTTGAAACCTCAAAACCTAACGATACTTGCGCATGGAAATAAACAAA
Found at i:80561292 original size:27 final size:27
Alignment explanation
Indices: 80561254--80561308 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
80561244 GTACAAGGAC
*
80561254 TAAATCTTAAAAGTCGGAAAATTTTAA
1 TAAATCTTAAAAGTCGGAAAAATTTAA
*
80561281 TAAATCTTAAAAGTGGGAAAAATTTAA
1 TAAATCTTAAAAGTCGGAAAAATTTAA
80561308 T
1 T
80561309 CACTATAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (27 bp):
TAAATCTTAAAAGTCGGAAAAATTTAA
Found at i:80567368 original size:27 final size:27
Alignment explanation
Indices: 80567336--80567389 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80567326 AATGTTAAGG
80567336 TATGTTAACTAAATTTCATATAGACTT
1 TATGTTAACTAAATTTCATATAGACTT
80567363 TATGTTAACTAAATTTCATATAGACTT
1 TATGTTAACTAAATTTCATATAGACTT
80567390 ACTAAGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (27 bp):
TATGTTAACTAAATTTCATATAGACTT
Found at i:80573659 original size:92 final size:93
Alignment explanation
Indices: 80573488--80573659 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 93
80573478 ACTTGTGTGA
* *
80573488 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCCACATGATGAGAGCCAGTGTAAGAACATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGAT-AGAGCCAGTGTAAGAACATGTC
80573553 TGGGACATGACATCGACATTCAGACGAGT
65 TGGGACATGACATCGACATTCAGACGAGT
* * * * *
80573582 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GTGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATAGAGCCAGTGTAAGAACATGTC
*
80573645 TGGGACATGGCATCG
65 TGGGACATGACATCG
80573660 GCACCTTACC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 31 0.45
94 37 0.54
95 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAGTGTAAGAACATGTCT
GGGACATGACATCGACATTCAGACGAGT
Found at i:80576052 original size:7 final size:8
Alignment explanation
Indices: 80576031--80576059 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
80576021 TTTTAGAACT
80576031 TATTTTTC
1 TATTTTTC
80576039 TATTTTTC
1 TATTTTTC
80576047 TATTTTTC
1 TATTTTTC
80576055 TATTT
1 TATTT
80576060 CGTATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTTC
Found at i:80583772 original size:13 final size:14
Alignment explanation
Indices: 80583751--80583783 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
80583741 AATTAATATT
*
80583751 TTAATTAAACTAA-
1 TTAAATAAACTAAC
80583764 TTAAATAAACTAAC
1 TTAAATAAACTAAC
80583778 TTAAAT
1 TTAAAT
80583784 TACCCTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (14 bp):
TTAAATAAACTAAC
Found at i:80586703 original size:13 final size:13
Alignment explanation
Indices: 80586685--80586712 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80586675 AACATCAAAA
80586685 ATTAGTCAAAATG
1 ATTAGTCAAAATG
80586698 ATTAGTCAAAATG
1 ATTAGTCAAAATG
80586711 AT
1 AT
80586713 AATCAGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (13 bp):
ATTAGTCAAAATG
Found at i:80587158 original size:39 final size:39
Alignment explanation
Indices: 80587115--80587249 Score: 207
Period size: 39 Copynumber: 3.5 Consensus size: 39
80587105 CGCATTCACT
* * *
80587115 TTTAAGCATCTATCACATTACACATATAATCACATAATA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
80587154 TTTAAGCATATATCACAATACACATATGATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
80587193 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
80587232 TTAAAGCATATATCACAA
1 TTTAAGCATATATCACAA
80587250 CACTTAAAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.30
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:80587208 original size:22 final size:22
Alignment explanation
Indices: 80587137--80587248 Score: 68
Period size: 22 Copynumber: 5.5 Consensus size: 22
80587127 TCACATTACA
* *
80587137 CATATAATCACATAATATTTAAG
1 CATAT-ATCACATAACATTCAAG
*
80587160 CATATATCAC---A-ATAC-A-
1 CATATATCACATAACATTCAAG
80587176 CATATGATCACATAACATTCAAG
1 CATAT-ATCACATAACATTCAAG
80587199 CATATATCACA-ATAC--TC-A-
1 CATATATCACATA-ACATTCAAG
* *
80587217 TATA-ATCACATAACATTAAAG
1 CATATATCACATAACATTCAAG
80587238 CATATATCACA
1 CATATATCACA
80587249 ACACTTAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 29
0.66 0.06 0.28
Matches are distributed among these distances:
16 5 0.07
17 14 0.20
18 6 0.09
19 3 0.04
20 4 0.06
21 7 0.10
22 20 0.29
23 10 0.14
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.29
Consensus pattern (22 bp):
CATATATCACATAACATTCAAG
Found at i:80598901 original size:29 final size:29
Alignment explanation
Indices: 80598869--80598942 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
80598859 GATTCAAGCC
*
80598869 CGCACACAT-AGTGCCATATAGTC-CAAACT
1 CGCACAC-TCAGTGCCATACA-TCACAAACT
* *
80598898 CGCACACTGAGTGCCATACATCACAAGCT
1 CGCACACTCAGTGCCATACATCACAAACT
80598927 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
80598943 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.31, C:0.35, G:0.16, T:0.18
Consensus pattern (29 bp):
CGCACACTCAGTGCCATACATCACAAACT
Done.