Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 262 of 425
Found at i:80614356 original size:79 final size:81
Alignment explanation
Indices: 80614255--80614439 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
80614245 ACGACTCGCT
** * * *
80614255 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCCCGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
80614318 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
80614335 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
80614399 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
80614415 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80614440 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:80614369 original size:39 final size:40
Alignment explanation
Indices: 80614255--80614439 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
80614245 ACGACTCGCT
** * * *
80614255 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
80614295 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
80614335 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
80614374 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
80614415 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80614440 CATCATTCGA
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.63
41 11 0.09
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:80623988 original size:2 final size:2
Alignment explanation
Indices: 80623981--80624008 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80623971 AAGGACAGCA
80623981 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80624009 TTAGCCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80625392 original size:31 final size:31
Alignment explanation
Indices: 80625347--80625433 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 31
80625337 AAAAAAGTGT
* *
80625347 TTTAAAT-AAAATTTTTAAATAGTT-TATTG
1 TTTAAATAAAAATTTTTAAATAGTTCAATAG
80625376 ATTTAAATAAAAATTTTTAAATAGTTCAATAG
1 -TTTAAATAAAAATTTTTAAATAGTTCAATAG
* *
80625408 CTTAAATTAAAAACTTTTAAATAGTT
1 TTTAAA-TAAAAATTTTTAAATAGTT
80625434 GAATGACCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
30 7 0.14
31 22 0.44
32 21 0.42
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (31 bp):
TTTAAATAAAAATTTTTAAATAGTTCAATAG
Found at i:80627002 original size:60 final size:58
Alignment explanation
Indices: 80626931--80627044 Score: 201
Period size: 60 Copynumber: 1.9 Consensus size: 58
80626921 TTAGTTAGCT
*
80626931 GGTGACCAAAAAAGACAATATTGAATAGTTGAGTGACCATTTTGTAATTTTTCATAATTA
1 GGTGACCAAAAAAGACAATATTGAATAG--GAGTGACCATTTTGTAACTTTTCATAATTA
80626991 GGTGACCAAAAAAGACAATATTGAATAGGAGTGACCATTTTGTAACTTTTCATA
1 GGTGACCAAAAAAGACAATATTGAATAGGAGTGACCATTTTGTAACTTTTCATA
80627045 GTTGGGTAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
58 25 0.47
60 28 0.53
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (58 bp):
GGTGACCAAAAAAGACAATATTGAATAGGAGTGACCATTTTGTAACTTTTCATAATTA
Found at i:80627085 original size:29 final size:29
Alignment explanation
Indices: 80627021--80627085 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
80627011 TTGAATAGGA
* *
80627021 GTGACCATTTTGTAACTTTTCATAGTTGG
1 GTGACCATTTTGTAACTTTTCATAATTAG
* *
80627050 GTAACCATTTTGTAATTTTTCATAATTAG
1 GTGACCATTTTGTAACTTTTCATAATTAG
80627079 GTGACCA
1 GTGACCA
80627086 AAAAAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (29 bp):
GTGACCATTTTGTAACTTTTCATAATTAG
Found at i:80630197 original size:12 final size:12
Alignment explanation
Indices: 80630180--80630206 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80630170 TATTTGATCC
80630180 ATACTTTATTTA
1 ATACTTTATTTA
80630192 ATACTTTATTTA
1 ATACTTTATTTA
80630204 ATA
1 ATA
80630207 ATTAAAGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (12 bp):
ATACTTTATTTA
Found at i:80632507 original size:25 final size:25
Alignment explanation
Indices: 80632468--80632519 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
80632458 CAGGCCTATT
*
80632468 TTCATAGCTCGTGTGAGCATTCTGA
1 TTCATAGCCCGTGTGAGCATTCTGA
*
80632493 TTCATAGCCCTTGTGAGCATTCTGA
1 TTCATAGCCCGTGTGAGCATTCTGA
80632518 TT
1 TT
80632520 TACAACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (25 bp):
TTCATAGCCCGTGTGAGCATTCTGA
Found at i:80632532 original size:25 final size:25
Alignment explanation
Indices: 80632479--80632537 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
80632469 TCATAGCTCG
* * *
80632479 TGTGAGCATTCTGATTCATAGCCCT
1 TGTGAGCATTCTGATTCACAACCCA
* *
80632504 TGTGAGCATTCTGATTTACAACTCA
1 TGTGAGCATTCTGATTCACAACCCA
80632529 TGTGAGCAT
1 TGTGAGCAT
80632538 ACATGTACAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (25 bp):
TGTGAGCATTCTGATTCACAACCCA
Found at i:80633176 original size:30 final size:30
Alignment explanation
Indices: 80633130--80633191 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
80633120 AAACCTCTTT
80633130 ATTTTCCCCCAAAACTTTTACTCCT-TCCC
1 ATTTTCCCCCAAAACTTTTACTCCTCTCCC
*
80633159 ATTTTCCTCCTAAAACTTTTACTCCTCTCCC
1 ATTTTCC-CCCAAAACTTTTACTCCTCTCCC
80633190 AT
1 AT
80633192 CCTACCCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 7 0.23
30 17 0.57
31 6 0.20
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.40
Consensus pattern (30 bp):
ATTTTCCCCCAAAACTTTTACTCCTCTCCC
Found at i:80639515 original size:24 final size:24
Alignment explanation
Indices: 80639483--80639535 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
80639473 AATCTTAAGT
80639483 ACCTTCTTACTCAAAAGGAGTTGA
1 ACCTTCTTACTCAAAAGGAGTTGA
80639507 ACCTTCTTACTCAAAAGGAGTTGA
1 ACCTTCTTACTCAAAAGGAGTTGA
80639531 ACCTT
1 ACCTT
80639536 AGGCAGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (24 bp):
ACCTTCTTACTCAAAAGGAGTTGA
Found at i:80644770 original size:91 final size:91
Alignment explanation
Indices: 80644615--80644794 Score: 297
Period size: 91 Copynumber: 2.0 Consensus size: 91
80644605 ACAAGCAGTA
* * *
80644615 TGTCATTAACATATAAAATCAAATATAGAACCTTAGTCCTACTAAACTTGTGGTATATACAATTA
1 TGTCATTAACATATAAAACCAAATATAGAACCTTACTCCCACTAAACTTGTGGTATATACAATTA
80644680 TCGACCAAATTCATCTCTAAACTGTC
66 TCGACCAAATTCATCTCTAAACTGTC
* *
80644706 TGTCATTAACATATAAAACCAAATATAGAGCCTTACTCCCACTAAACTTGTGTTATATACAATTA
1 TGTCATTAACATATAAAACCAAATATAGAACCTTACTCCCACTAAACTTGTGGTATATACAATTA
* *
80644771 TCTACCAAATTCATCTTTAAACTG
66 TCGACCAAATTCATCTCTAAACTG
80644795 ATTTTGTAAC
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 82 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (91 bp):
TGTCATTAACATATAAAACCAAATATAGAACCTTACTCCCACTAAACTTGTGGTATATACAATTA
TCGACCAAATTCATCTCTAAACTGTC
Found at i:80653993 original size:34 final size:33
Alignment explanation
Indices: 80653954--80654070 Score: 144
Period size: 34 Copynumber: 3.4 Consensus size: 33
80653944 GGTTTAGAAT
*
80653954 TTTTTAAAAAAATTAATTCAATTAGGTTTTAGGG
1 TTTTTAAAAAAATTAATTAAATTAGG-TTTAGGG
* **
80653988 GTTTTAAGTAAATTAATTAAATTAAGGTTTAGGG
1 TTTTTAAAAAAATTAATTAAATT-AGGTTTAGGG
* *
80654022 TTTTTAAGAAAATTAATTAAATTAGGGTTTAGGT
1 TTTTTAAAAAAATTAATTAAATTA-GGTTTAGGG
80654056 TTTTTAAAAATAATT
1 TTTTTAAAAA-AATT
80654071 TTGTGTTTAG
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
33 1 0.01
34 64 0.89
35 7 0.10
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.44
Consensus pattern (33 bp):
TTTTTAAAAAAATTAATTAAATTAGGTTTAGGG
Found at i:80654574 original size:124 final size:125
Alignment explanation
Indices: 80654165--80654902 Score: 871
Period size: 124 Copynumber: 5.9 Consensus size: 125
80654155 TCTTTCAAAT
* * * * *
80654165 TAATTTTGAGAAGACGGTTCTAAAAAGATAATATCTAAAACGCTTCAAGCAGGATGCACTGTCAG
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
* * ** * *
80654230 CAAAAGTACTG-AAAAAGCTCTTACGTGTACGCTCTTTTTATACAGTAGTTCCTGAAAAA
66 TAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
* * * * *
80654289 TAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA-CAAGGATGCATTATTA
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGC-AGGATGCATTGTCA
* * * * *
80654353 GAAAAATTACTTAAAAAA-CTCCCACGTGGATG--CTTTTTCTACTGTAGTTCTTGAAAAA
65 GTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
* * * *
80654411 TAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGCTTTAAGTAGGATGCATTGTCAG
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
* *
80654476 -CAAATCTACTGAAAAAAG-TCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
66 TAAAAT-TACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
* * * *
80654535 TAATTTTGAGAAGACAGTTCTAAAAAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTGTTAG
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
* * *
80654600 CAAAATTACTGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTCTTGAAAATA
66 TAAAATTACTG-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAA-A
* * ** * * * * *
80654662 TAAATTTGAGAAGACAGTTCTATGAAAATAATGTAAAAAATGCTTCAAGCAGGATGTATTGTTAG
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
* * * *
80654727 TAAAATTACT-AAAAAAACTCCCACGTGGACGCTCTTTTTCTACGGTAGTTACTAAAAAAA
66 TAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT-GAAAAA
* * * * ** *
80654787 TAAATTTGAGAAGACGATTCTGAAAAAATAGTGTGAAAAATACTTTAAGCAGGATGCATTGTCAG
1 TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
* *
80654852 TAAAATTACTGAAAAAAGCTCCCATGTGGACGCTTTTTTTCTACAGTAGTT
66 TAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
80654903 ATTACTTGGC
Statistics
Matches: 529, Mismatches: 72, Indels: 24
0.85 0.12 0.04
Matches are distributed among these distances:
121 4 0.01
122 103 0.19
123 1 0.00
124 157 0.30
125 119 0.22
126 77 0.15
127 68 0.13
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (125 bp):
TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAG
TAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
Found at i:80654607 original size:246 final size:245
Alignment explanation
Indices: 80654161--80654889 Score: 894
Period size: 246 Copynumber: 2.9 Consensus size: 245
80654151 TTTTTCTTTC
* * *
80654161 AAAT-TAATTTTGAGAAGACGGTTCTAAAAAGATAATATCTAAAACGCTTCAAGCAGGATGCACT
1 AAATATAATTTTGAGAAGACGGTTCTAAAAA-ATAATGTCAAAAACGCTTCAAGCAGGATGCATT
* * * *
80654225 GTCAGCAAAAGTACTG-AAAAAGCTCTTACGTGTACGCTCTTTTTATACAGTAGTTCCTGAAAAA
65 GTCAGC-AAATTACTGAAAAAAG-TCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAA
* * *
80654289 TAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA-CAAGGATGCATTATTA
128 TAATTTTGAGAAGAC-GTTCTGAAAAAATAGTGTAAAAAATGCTTCAAGC-AGGATGCATTGTTA
* *
80654353 GAAAAATTACTTAAAAAA-CTCCCACGTGGATGCTTTTTCTACT-GTAGTTCTTGA
191 GAAAAATTACTAAAAAAAGCTCCCACGTGGACGCTTTTTCTA-TAGTAGTTCTTGA
* * * *
80654407 AAA-ATAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGCTTTAAGTAGGATGCATT
1 AAATATAATTTTGAGAAGACGGTTCT-AAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATT
80654471 GTCAGCAAATCTACTGAAAAAAGTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAAT
65 GTCAGCAAAT-TACTGAAAAAAGTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAAT
* * * *
80654536 AATTTTGAGAAGACAGTTCTAAAAAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTGTTAGC
129 AATTTTGAGAAGAC-GTTCTGAAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCATTGTTAGA
80654601 AAAATTACTGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTCTTGA
193 AAAATTACT-AAAAAAAGCTCCCACGTGGACG--CTTTTTCTATAGTAGTTCTTGA
* * * * * *
80654657 AAATATAAATTTGAGAAGACAGTTCTATGAAAATAATGTAAAAAATGCTTCAAGCAGGATGTATT
1 AAATATAATTTTGAGAAGACGGTTCTA-AAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATT
* * * * * * * *
80654722 GTTAGTAAAATTACTAAAAAAACTCCCACGTGGACGCTCTTTTTCTACGGTAGTTACTAAAAAAA
65 GTCAG-CAAATTACTGAAAAAAGTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCT-GAAAAA
* * * * *
80654787 TAAATTTGAGAAGACGATTCTGAAAAAATAGTGTGAAAAATACTTTAAGCAGGATGCATTGTCAG
128 TAATTTTGAGAAGACG-TTCTGAAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCATTGTTAG
* * *
80654852 TAAAATTACTGAAAAAAGCTCCCATGTGGACGCTTTTT
192 AAAAATTACTAAAAAAAGCTCCCACGTGGACGCTTTTT
80654890 TTCTACAGTA
Statistics
Matches: 418, Mismatches: 50, Indels: 27
0.84 0.10 0.05
Matches are distributed among these distances:
245 3 0.01
246 164 0.39
247 18 0.04
248 13 0.03
249 7 0.02
250 24 0.06
251 116 0.28
252 73 0.17
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (245 bp):
AAATATAATTTTGAGAAGACGGTTCTAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTG
TCAGCAAATTACTGAAAAAAGTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTGAAAAATAA
TTTTGAGAAGACGTTCTGAAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCATTGTTAGAAAA
ATTACTAAAAAAAGCTCCCACGTGGACGCTTTTTCTATAGTAGTTCTTGA
Found at i:80657559 original size:77 final size:76
Alignment explanation
Indices: 80657459--80657633 Score: 235
Period size: 77 Copynumber: 2.3 Consensus size: 76
80657449 GTGTGAGATA
* * * * * *
80657459 TATATCCGGGCTAATTCCTGAAGGCGTT-TTGTTGGTGTTATATCCGGGCTAAGTCTCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT-CGGGCTAAGTCCCGAAGGC-
*
80657523 TTCGTGCTGGTGT
64 TTCGTGCTGGTAT
*
80657536 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATTGGGCTAAGTCCCGAAGGCTT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCGGGCTAAGTCCCGAAGGCTT
80657601 CGTGCTGGTAT
66 CGTGCTGGTAT
80657612 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
80657634 CATGCTTTGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
76 23 0.26
77 43 0.49
78 21 0.24
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (76 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCGGGCTAAGTCCCGAAGGCTT
CGTGCTGGTAT
Found at i:80657615 original size:37 final size:39
Alignment explanation
Indices: 80657459--80657633 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
80657449 GTGTGAGATA
* * * * *
80657459 TATATCCGGGCTAATTCCTGAAGGCGTT-TTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
80657497 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
80657536 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
80657575 TATAT-TGGGCTAAGTCCCGAAGGC-TTCGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
80657612 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
80657634 CATGCTTTGT
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
37 17 0.14
38 46 0.37
39 52 0.42
40 8 0.07
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:80664254 original size:38 final size:39
Alignment explanation
Indices: 80664081--80664240 Score: 252
Period size: 39 Copynumber: 4.2 Consensus size: 39
80664071 GTGTGAGATA
* *
80664081 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGTTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
*
80664120 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
*
80664159 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* *
80664198 TATAT-TGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
80664235 TATATC
1 TATATC
80664241 GGCTTAAAGT
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
37 16 0.14
38 18 0.16
39 80 0.70
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.33
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:80664262 original size:38 final size:36
Alignment explanation
Indices: 80664089--80664271 Score: 195
Period size: 39 Copynumber: 4.8 Consensus size: 36
80664079 TATATATCCG
* *
80664089 GGCTAATTCCCGAAGGCATTTGTGCTGTTGTTATATCC
1 GGCTAAGTCCCGAAGGC-TTTGTGCTGGTGTTATAT-C
*
80664127 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCC
1 -GGCTAAGTCCCGAAGGC-TTTGTGCTGGTGTTATAT-C
* *
80664166 GGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATTG
1 -GGCTAAGTCCCGAAGGC-TTTGTGCTGGTGTTATA-TC
*
80664205 GGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATATC
1 GGCTAAGTCCCGAAGGCTTTGTGCTGGTGTTATATC
* * *
80664241 GGCTTAAAGTCCCGCATGCTTTGTGGTGGTG
1 GGC-T-AAGTCCCGAAGGCTTTGTGCTGGTG
80664272 ATTGAATTTG
Statistics
Matches: 130, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
36 4 0.03
37 16 0.12
38 38 0.29
39 71 0.55
40 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.32
Consensus pattern (36 bp):
GGCTAAGTCCCGAAGGCTTTGTGCTGGTGTTATATC
Found at i:80668133 original size:49 final size:49
Alignment explanation
Indices: 80667942--80668111 Score: 322
Period size: 49 Copynumber: 3.5 Consensus size: 49
80667932 ATACTAAAAT
*
80667942 ATGTGAAAGTGTAGGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
80667991 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
80668040 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
*
80668089 ATGTGAAAGTGTATGCATATGTG
1 ATGTGAAAGTGTATGTATATGTG
80668112 GTAAAGCCGA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 119 1.00
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
Found at i:80668133 original size:98 final size:98
Alignment explanation
Indices: 80667942--80668133 Score: 312
Period size: 98 Copynumber: 2.0 Consensus size: 98
80667932 ATACTAAAAT
*
80667942 ATGTGAAAGTGTAGGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGT
1 ATGTGAAAGTGTAGGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
* * * *
80668007 ATATGTGATGAGGCCTAATGGCCGATGTGGTGA
66 ATATGTGATAAAGCCGAATGGCCAATGTGGTGA
*
80668040 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
1 ATGTGAAAGTGTAGGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
* *
80668105 ATATGTGGTAAAGCCGAATGGCTAATGTG
66 ATATGTGATAAAGCCGAATGGCCAATGTG
80668134 AATGTTGTAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.30
Consensus pattern (98 bp):
ATGTGAAAGTGTAGGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGC
ATATGTGATAAAGCCGAATGGCCAATGTGGTGA
Found at i:80668232 original size:37 final size:37
Alignment explanation
Indices: 80668182--80668263 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
80668172 AATATGTTCC
80668182 GGTAAGACCCGATGACTACGTGTGGAGATTATGACCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGACCG
*
80668219 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGACCG
80668256 GGTAAGAC
1 GGTAAGAC
80668264 TTCTTTTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGACCG
Found at i:80670379 original size:29 final size:29
Alignment explanation
Indices: 80670347--80670478 Score: 237
Period size: 29 Copynumber: 4.6 Consensus size: 29
80670337 CGTTAACCGA
80670347 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
80670376 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
80670405 GCACTATGTGTGTGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
80670434 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
80670463 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
80670479 TTTTTCAATA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:80670386 original size:58 final size:58
Alignment explanation
Indices: 80670315--80670478 Score: 215
Period size: 58 Copynumber: 2.8 Consensus size: 58
80670305 CGAATGATTA
* *
80670315 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* * *
80670373 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGTGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* ** *
80670431 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAG
80670479 TTTTTCAATA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 6 0.06
58 88 0.92
59 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:80670416 original size:87 final size:87
Alignment explanation
Indices: 80670315--80670478 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
80670305 CGAATGATTA
* *
80670315 GAGGCACTGTGTGTG-CAAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATCGAGGC
1 GAGGCACTATGTGTGTCAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGC
80670378 ACTATGTGTGCGAGATCAGTAATC
64 ACTATGTGTGCGAGATCAGTAATC
* * * *
80670402 GAGGCACTATGTGTGTGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCAC
1 GAGGCACTATGTGTGTCAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
*
80670467 TGTGTGTGCGAG
66 TATGTGTGCGAG
80670479 TTTTTCAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
86 6 0.09
87 60 0.88
88 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (87 bp):
GAGGCACTATGTGTGTCAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
TATGTGTGCGAGATCAGTAATC
Found at i:80671060 original size:40 final size:41
Alignment explanation
Indices: 80670962--80671060 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
80670952 ATCGAATGGT
* ** * *
80670962 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
80671003 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
80671044 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
80671061 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:80671083 original size:40 final size:40
Alignment explanation
Indices: 80671005--80671102 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 40
80670995 GTTACTAAAT
* *
80671005 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
* * *
80671045 CCGGGCT-ATGTCCCG-AGGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGG-CAATCGAGCGAATCACTATAA
* *
80671085 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAATTCCCGAAGG
80671103 TACGCGATTC
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
Found at i:80674068 original size:49 final size:49
Alignment explanation
Indices: 80673926--80674046 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
80673916 ATACTAAAAT
80673926 ATGTGAAAGTGTATGTATATGTGATGAGGCCAAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCAAATGGCCGATGTGGTGA
*
80673975 ATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATGTATATGTGATGAGGCCAAATGGCCGATGTGGTGA
*
80674024 ATGTGAAAGTGTATGCATATGTG
1 ATGTGAAAGTGTATGTATATGTG
80674047 GTAAAGCCGA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.28, C:0.07, G:0.34, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATGTATATGTGATGAGGCCAAATGGCCGATGTGGTGA
Found at i:80674169 original size:37 final size:37
Alignment explanation
Indices: 80674119--80674199 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
80674109 TATGTTCCGA
80674119 GTAAGACCCGATGACTACGTGTGGAGATTATGACCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGACCGG
* *
80674156 GTAAGACCCGATGACTACGTGTGGAGATTATGTCTGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGACCGG
80674193 GTAAGAC
1 GTAAGAC
80674200 TTCTTTTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.23
Consensus pattern (37 bp):
GTAAGACCCGATGACTACGTGTGGAGATTATGACCGG
Found at i:80682159 original size:10 final size:10
Alignment explanation
Indices: 80682146--80682200 Score: 65
Period size: 10 Copynumber: 5.5 Consensus size: 10
80682136 ATTCTAAAAA
*
80682146 ATAAATATAG
1 ATAAATAAAG
*
80682156 ATAAATAAAA
1 ATAAATAAAG
*
80682166 ATAATTAAAG
1 ATAAATAAAG
* *
80682176 ATAATTAAAT
1 ATAAATAAAG
80682186 ATAAATAAAG
1 ATAAATAAAG
80682196 ATAAA
1 ATAAA
80682201 AGCTAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 38 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:80682167 original size:20 final size:20
Alignment explanation
Indices: 80682142--80682200 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
80682132 TTAAATTCTA
*
80682142 AAAAATAAATATAGATAAAT
1 AAAAATAAATAAAGATAAAT
* *
80682162 AAAAATAATTAAAGATAATT
1 AAAAATAAATAAAGATAAAT
*
80682182 AAATATAAATAAAGATAAA
1 AAAAATAAATAAAGATAAA
80682201 AGCTAAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAAATAAATAAAGATAAAT
Found at i:80683289 original size:24 final size:24
Alignment explanation
Indices: 80683262--80683320 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
80683252 AAAAAAATGT
* *
80683262 GGAGGTGTTTGCATCACCCATGGC
1 GGAGGTGTTTGCATCACCCACGAC
80683286 GGAGGTGTTTGCATCACCCACGAC
1 GGAGGTGTTTGCATCACCCACGAC
80683310 GGAGGTGTTTG
1 GGAGGTGTTTG
80683321 AATCCCATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.17, C:0.22, G:0.36, T:0.25
Consensus pattern (24 bp):
GGAGGTGTTTGCATCACCCACGAC
Found at i:80683522 original size:18 final size:18
Alignment explanation
Indices: 80683481--80683522 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
80683471 GACTGGGAAA
* *
80683481 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
80683499 AAGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
80683517 AGGATA
1 AGGATA
80683523 TACACATAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:80685075 original size:25 final size:24
Alignment explanation
Indices: 80685026--80685077 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
80685016 ACTGTTATAA
* *
80685026 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAATAATT
80685050 AAAATTACATAAATAAAAAA-ATATT
1 AAAATTACA-AAATAAAAAATA-ATT
80685075 AAA
1 AAA
80685078 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAATAATT
Found at i:80689491 original size:27 final size:26
Alignment explanation
Indices: 80689451--80689545 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
80689441 ATCGCCACAA
* *
80689451 AAAGACTATCCTTTCATAATTCATCAC
1 AAAGGCTATTCTTTCATAATT-ATCAC
* * *
80689478 AAAGGTTATTCTTTCATAATTTTCCAA
1 AAAGGCTATTCTTTCATAATTAT-CAC
* *
80689505 AAATGCTATTCTTTCATAATTAACCAC
1 AAAGGCTATTCTTTCATAATT-ATCAC
80689532 AAAGGCTATTCTTT
1 AAAGGCTATTCTTT
80689546 ACTGTCATGT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (26 bp):
AAAGGCTATTCTTTCATAATTATCAC
Found at i:80691840 original size:21 final size:21
Alignment explanation
Indices: 80691802--80691841 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80691792 GGAGCTGAAG
*
80691802 GAAAACCCATAAGGGTTAAAC
1 GAAAACCCATAAGAGTTAAAC
* *
80691823 GAAAACTCATATGAGTTAA
1 GAAAACCCATAAGAGTTAA
80691842 CAGAAGCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (21 bp):
GAAAACCCATAAGAGTTAAAC
Found at i:80691952 original size:24 final size:24
Alignment explanation
Indices: 80691925--80691989 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
80691915 GTAATTTGTC
*
80691925 GTCAATTCATCCTTTGTATTTACA
1 GTCAATTCATCCTTTGCATTTACA
*
80691949 GTCAATTCATCCTTTGCATTTACC
1 GTCAATTCATCCTTTGCATTTACA
*
80691973 GTCAATTCATCATTTGC
1 GTCAATTCATCCTTTGC
80691990 CACAGATTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (24 bp):
GTCAATTCATCCTTTGCATTTACA
Found at i:80692085 original size:2 final size:2
Alignment explanation
Indices: 80692078--80692114 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
80692068 ATTTCAAACA
80692078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80692115 ATACATAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80695803 original size:66 final size:66
Alignment explanation
Indices: 80695692--80695818 Score: 209
Period size: 66 Copynumber: 1.9 Consensus size: 66
80695682 ATTTAACAAA
* * * *
80695692 ATTTTTTCTCTCGTTTTCTCTCTTGCTAAACACCATTTTTTTTCTTCAAAACAAATGGTTGCTGC
1 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTCTTCTTCAAAACAAATGGTTGCTGC
80695757 C
66 C
*
80695758 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTCTTCTTCAAAACATATGGTTG
1 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTCTTCTTCAAAACAAATGGTTG
80695819 GCTCATTTCT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.20, C:0.25, G:0.08, T:0.46
Consensus pattern (66 bp):
ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTCTTCTTCAAAACAAATGGTTGCTGC
C
Found at i:80700565 original size:44 final size:42
Alignment explanation
Indices: 80700475--80700579 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 42
80700465 AAATATCCTA
* * * *
80700475 TCCCAGATAGGGTCTTACACGAAATCATATACGATGCCGATG
1 TCCCAGATATGGTCTTACACGAAATCAAATACGATGCCAACG
*
80700517 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAACG
1 TCCCAGATATGGTCTTACACG-AAA--TCAAATACGATGCCAACG
* *
80700561 TCCCATATGTGGTCTTACA
1 TCCCAGATATGGTCTTACA
80700580 TGATATCACA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
42 19 0.37
43 3 0.06
44 25 0.48
45 5 0.10
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACACGAAATCAAATACGATGCCAACG
Found at i:80708222 original size:46 final size:48
Alignment explanation
Indices: 80708017--80708336 Score: 220
Period size: 46 Copynumber: 6.8 Consensus size: 48
80708007 TGGATAAGTT
* * *
80708017 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ATCATCGAG
* * *
80708066 GCCGATGCCATGTCCAAGACATGGTCTTACACTAGCTCTTGTATAT-ATACG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GC---TATATCAT-CGAG
* * * * * * * *
80708118 GCTGACGCCATGTCCTAGACATGGTCTTATACTAGC-ACAAC-TCTTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCATC-GAG
*
80708164 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCATCGAG
* * * *
80708210 GCCGATG-CATGTCCCAGACAT-GTCTTACAC-AGC-ACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-T-ATCATCGAG
* * * *
80708255 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATATCATCGAG
*
80708303 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
80708337 ACACAAATAA
Statistics
Matches: 214, Mismatches: 37, Indels: 43
0.73 0.13 0.15
Matches are distributed among these distances:
44 12 0.06
45 30 0.14
46 69 0.32
47 23 0.11
48 8 0.04
49 34 0.16
50 1 0.00
51 1 0.00
52 31 0.14
53 2 0.01
54 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCATCGAG
Found at i:80708310 original size:93 final size:95
Alignment explanation
Indices: 80708020--80708338 Score: 315
Period size: 93 Copynumber: 3.4 Consensus size: 95
80708010 ATAAGTTGCC
*
80708020 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTC-ATTGAGGCCGATGCCATGTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGTCTA-T-A--CCGATGCCATGTCCCA
*
80708083 GACATGGTCTTACACTAGCTCTTGTATATATACGT-GCT
61 GACATGGTCTTACACTGGCTC-T-TATA-AT-CGTGGCT
* * * * *
80708121 GACGCCATGTCCTAGACATGGTCTTATACTAGCACAAC-TCT-TAGCTGATG-CATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-TCGTCTATA-CCGATGCCATGTCCCAGAC
* * * *
80708183 AT-GTCTTACACTGGCT-ATATCATCGAGGCC
64 ATGGTCTTACACTGGCTCTTATAATCGTGGCT
80708213 GATG-CATGTCCCAGACAT-GTCTTACAC-AGCACTCGTCTCAATACCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCT--ATACCGATGCCATGTCCCAGAC
80708275 ATGGTCTTACACTGGCTCTTATAAT-GTGGCT
64 ATGGTCTTACACTGGCTCTTATAATCGTGGCT
*
80708306 GATG-CATGTCCCAGACAT-GTCTTACACTGGCAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAC
80708339 ACAAATAACC
Statistics
Matches: 185, Mismatches: 21, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
88 1 0.01
89 8 0.04
90 8 0.04
91 20 0.11
92 23 0.12
93 48 0.26
94 9 0.05
96 13 0.07
97 13 0.07
98 6 0.03
99 1 0.01
100 2 0.01
101 32 0.17
102 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTATACCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTCTTATAATCGTGGCT
Found at i:80708691 original size:30 final size:30
Alignment explanation
Indices: 80708655--80708735 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
80708645 CATCTTAGGT
80708655 AAAATGACCATTTTGCCCCTAGACCTTGGC
1 AAAATGACCATTTTGCCCCTAGACCTTGGC
80708685 AAAATGACCATTTTGCCCCTAGACCTTGGC
1 AAAATGACCATTTTGCCCCTAGACCTTGGC
*
80708715 AAAATGACCATTTTTCCCCTA
1 AAAATGACCATTTTGCCCCTA
80708736 TGCTCGGAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAGACCTTGGC
Found at i:80711844 original size:28 final size:27
Alignment explanation
Indices: 80711781--80711850 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
80711771 ATAGTGAGTC
80711781 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
80711808 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
80711836 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80711851 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80714726 original size:40 final size:40
Alignment explanation
Indices: 80714667--80714808 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
80714657 AAATTGAATG
* * *
80714667 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
80714707 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
80714747 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
80714787 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
80714809 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:80714809 original size:40 final size:39
Alignment explanation
Indices: 80714706--80714834 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
80714696 TGCTGGAAAT
* * *
80714706 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
80714746 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
80714786 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
80714826 TATATCCGG
1 TATATCCGG
80714835 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:80722691 original size:40 final size:40
Alignment explanation
Indices: 80722632--80722773 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
80722622 AAATTGAATG
* * *
80722632 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
80722672 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
80722712 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
80722752 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
80722774 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:80722774 original size:40 final size:39
Alignment explanation
Indices: 80722671--80722799 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
80722661 TGCTGGAAAT
* * *
80722671 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
80722711 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
80722751 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
80722791 TATATCCGG
1 TATATCCGG
80722800 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:80731040 original size:34 final size:34
Alignment explanation
Indices: 80730997--80731065 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
80730987 CTAGGTTAGC
*
80730997 AAGAACCCTATTTTTGTACTCTATTTCTTTTTTT
1 AAGAACCCTATTTGTGTACTCTATTTCTTTTTTT
80731031 AAGAACCCTATTTGTGTACTCTATTTCTTTTTTT
1 AAGAACCCTATTTGTGTACTCTATTTCTTTTTTT
80731065 A
1 A
80731066 TTCTTCCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (34 bp):
AAGAACCCTATTTGTGTACTCTATTTCTTTTTTT
Found at i:80732804 original size:29 final size:28
Alignment explanation
Indices: 80732771--80732911 Score: 129
Period size: 29 Copynumber: 4.9 Consensus size: 28
80732761 TTTTAAGAAT
* *
80732771 AGTGGCAAAATTGCAAAATCTAGATAACC
1 AGTGGCAAAACTGTAAAATCTAGA-AACC
* **
80732800 AGTGGCAGAACTGTAAAATCTAGAAAAT
1 AGTGGCAAAACTGTAAAATCTAGAAACC
* * *
80732828 AGTGGCAGAACTGTAAAATTTGGAAAACC
1 AGTGGCAAAACTGTAAAATCTAG-AAACC
* * **
80732857 AATGGCAAAACTGTAAAATCTGGAAAAAT
1 AGTGGCAAAACTGTAAAATCTAG-AAACC
* *
80732886 AGTGGCAGAACTGTAAAATCTGGAAA
1 AGTGGCAAAACTGTAAAATCTAGAAA
80732912 TCCAATAACA
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.27
29 69 0.73
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (28 bp):
AGTGGCAAAACTGTAAAATCTAGAAACC
Found at i:80732829 original size:57 final size:58
Alignment explanation
Indices: 80732768--80732917 Score: 194
Period size: 57 Copynumber: 2.6 Consensus size: 58
80732758 ATTTTTTAAG
* * * * * *
80732768 AATAGTGGCAAAATTGCAAAATCTAGATAACCAGTGGCAGAACTGTAAAATCTAG-AA
1 AATAGTGGCAGAACTGTAAAATCTAGAAAACCAATGGCAAAACTGTAAAATCTAGAAA
* * *
80732825 AATAGTGGCAGAACTGTAAAATTTGGAAAACCAATGGCAAAACTGTAAAATCTGGAAA
1 AATAGTGGCAGAACTGTAAAATCTAGAAAACCAATGGCAAAACTGTAAAATCTAGAAA
* *
80732883 AATAGTGGCAGAACTGTAAAATCTGGAAATCCAAT
1 AATAGTGGCAGAACTGTAAAATCTAGAAAACCAAT
80732918 AACAAAATTG
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
57 46 0.57
58 35 0.43
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.21
Consensus pattern (58 bp):
AATAGTGGCAGAACTGTAAAATCTAGAAAACCAATGGCAAAACTGTAAAATCTAGAAA
Found at i:80732924 original size:58 final size:57
Alignment explanation
Indices: 80732808--80732929 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 57
80732798 CCAGTGGCAG
* **
80732808 AACTGTAAAATCTAGAAAATAGTGGCAGAACTGTAAAATTTGGAAAACCAATGGCAA
1 AACTGTAAAATCTAGAAAATAGTGGCAGAACTGTAAAATCTGGAAAACCAATAACAA
* *
80732865 AACTGTAAAATCTGGAAAAATAGTGGCAGAACTGTAAAATCTGGAAATCCAATAACAA
1 AACTGTAAAATCTAG-AAAATAGTGGCAGAACTGTAAAATCTGGAAAACCAATAACAA
*
80732923 AATTGTA
1 AACTGTA
80732930 GGATTTGTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 14 0.24
58 44 0.76
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (57 bp):
AACTGTAAAATCTAGAAAATAGTGGCAGAACTGTAAAATCTGGAAAACCAATAACAA
Found at i:80734476 original size:42 final size:42
Alignment explanation
Indices: 80734398--80734479 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
80734388 GGTGCAGGGG
* *
80734398 ACACACGGCCGGATCACATGCCCATGGGGCGGACCGTGTGTC
1 ACACACGGCCAGATCACATGCCCATGGGGCGAACCGTGTGTC
* * *
80734440 ACACACGGCCAAGA-CACATGCCCATGTGTCTAACCGTGTG
1 ACACACGGCC-AGATCACATGCCCATGGGGCGAACCGTGTG
80734480 GACAATTTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (42 bp):
ACACACGGCCAGATCACATGCCCATGGGGCGAACCGTGTGTC
Found at i:80750841 original size:46 final size:46
Alignment explanation
Indices: 80750695--80750865 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
80750685 AACCCGCCCC
* * *
80750695 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
80750740 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
80750787 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
80750832 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80750866 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 34 0.32
46 58 0.55
47 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:80750856 original size:92 final size:91
Alignment explanation
Indices: 80750700--80750868 Score: 302
Period size: 92 Copynumber: 1.8 Consensus size: 91
80750690 GCCCCTAAGT
*
80750700 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80750765 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
* *
80750791 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80750856 CGAGTTCGGATGC
65 CGAGTTCGGATGC
80750869 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 27 0.36
92 47 0.64
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:80750884 original size:46 final size:46
Alignment explanation
Indices: 80750697--80750884 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 46
80750687 CCCGCCCCTA
* * * *
80750697 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
80750741 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
80750789 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
80750834 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
80750880 AGTGA
1 AGTGA
80750885 CATGTCACTT
Statistics
Matches: 115, Mismatches: 11, Indels: 33
0.72 0.07 0.21
Matches are distributed among these distances:
44 8 0.07
45 33 0.29
46 65 0.57
47 1 0.01
48 3 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:80757821 original size:45 final size:45
Alignment explanation
Indices: 80757757--80757925 Score: 202
Period size: 45 Copynumber: 3.7 Consensus size: 45
80757747 AACCCGCCCC
* *
80757757 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
* *
80757802 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* * *
80757848 TTCA-CGAA-TCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
80757893 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
80757926 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 62 0.60
46 30 0.29
47 5 0.05
48 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:80758383 original size:30 final size:30
Alignment explanation
Indices: 80758349--80758408 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
80758339 ATTTAATACG
*
80758349 AACTTTAAAAAAATTACACTTTTGTCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
80758379 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
80758409 GGCTCGGAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:80761931 original size:29 final size:28
Alignment explanation
Indices: 80761792--80761931 Score: 102
Period size: 29 Copynumber: 4.8 Consensus size: 28
80761782 TCACCGGTCA
* *
80761792 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGAT-GGTACGGCTATCGATT
* * * *
80761821 ATGAAAAGGGATGGTAACAGCCATCAACT
1 ATGAAAAGGGATGGT-ACGGCTATCGATT
* * *
80761850 ATGAAAAGGGATGGTGATGACCATCGAATT
1 ATGAAAAGGGATGGT-ACGGCTATCG-ATT
* * **
80761880 ATG-AAAGGGATAGATTCATCTATCGATT
1 ATGAAAAGGGAT-GGTACGGCTATCGATT
80761908 ATGAAAAGGGATGGTGACGGCTAT
1 ATGAAAAGGGATGGT-ACGGCTAT
80761932 TGTAACACCC
Statistics
Matches: 84, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
28 10 0.12
29 67 0.80
30 7 0.08
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (28 bp):
ATGAAAAGGGATGGTACGGCTATCGATT
Found at i:80763375 original size:40 final size:39
Alignment explanation
Indices: 80763304--80763439 Score: 125
Period size: 40 Copynumber: 3.5 Consensus size: 39
80763294 GGATATAACG
* * * * *
80763304 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGCG
1 ACTCGCACGAATGCCTTCAGGACTTAA-CCCGGTT-TAGCA
*
80763344 ACTCGCACGAATGCCTTCAGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCAGGACTTAACCC-GGTTTAGCA
* * **
80763384 ACTTGCAC-AATGCCTTCAGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCAGGACTTAACCCGG-TTTAGCA
80763422 ACTCGCACGAATGCCTTC
1 ACTCGCACGAATGCCTTC
80763440 GGATCCTAGT
Statistics
Matches: 82, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
37 2 0.02
38 20 0.24
39 21 0.26
40 33 0.40
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCAGGACTTAACCCGGTTTAGCA
Found at i:80763424 original size:38 final size:40
Alignment explanation
Indices: 80763344--80763439 Score: 142
Period size: 38 Copynumber: 2.5 Consensus size: 40
80763334 GGTTATAGCG
*
80763344 ACTCGCACGAATGCCTTCAGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCAGGACTTAACCCGGATTTAGTA
* * *
80763384 ACTTGCAC-AATGCCTTCAGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCAGGACTTAACCCGGATTTAGTA
80763422 ACTCGCACGAATGCCTTC
1 ACTCGCACGAATGCCTTC
80763440 GGATCCTAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 22 0.44
39 21 0.42
40 7 0.14
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCAGGACTTAACCCGGATTTAGTA
Found at i:80765232 original size:29 final size:29
Alignment explanation
Indices: 80765190--80765257 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
80765180 AGCTATCGAC
*
80765190 TATGAAGAGGGATGGTGACGACCATCAAG
1 TATGAAAAGGGATGGTGACGACCATCAAG
*
80765219 TATGAAAAGGGATGGTGACGACCATCATG
1 TATGAAAAGGGATGGTGACGACCATCAAG
*
80765248 TATTAAAAGG
1 TATGAAAAGG
80765258 TATAGCTTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAG
Found at i:80765316 original size:30 final size:29
Alignment explanation
Indices: 80765252--80765321 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
80765242 ATCATGTATT
* * * *
80765252 AAAAGGTATAGCTTCGGCTATCGAATATG
1 AAAAGGGATGGCTTCGGCCATCGAATAAG
*
80765281 AAAAGGGATGGCTTCGGCCATCGATTAAAG
1 AAAAGGGATGGCTTCGGCCATCGAAT-AAG
80765311 AAAAGGGATGG
1 AAAAGGGATGG
80765322 TTTCAACCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (29 bp):
AAAAGGGATGGCTTCGGCCATCGAATAAG
Found at i:80773869 original size:6 final size:6
Alignment explanation
Indices: 80773826--80773887 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
80773816 AAGAAGTTTA
* * *
80773826 AAAACAT AACAAT AAACAT AAAAAT AGAAAT AATAAAAT AAAAAT -AAAAT
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT -A-AAAAT AAAAAT AAAAAT
80773876 AAAAAAT AAAAA
1 -AAAAAT AAAAA
80773888 AATGATAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
5 5 0.11
6 26 0.58
7 10 0.22
8 4 0.09
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:80773889 original size:26 final size:26
Alignment explanation
Indices: 80773836--80773890 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
80773826 AAAACATAAC
* * *
80773836 AATAAACATAAAAATAGAAATAATAA
1 AATAAAAATAAAAATAAAAATAAAAA
80773862 AATAAAAAT-AAAATAAAAAATAAAAA
1 AATAAAAATAAAAAT-AAAAATAAAAA
80773888 AAT
1 AAT
80773891 GATAAATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (26 bp):
AATAAAAATAAAAATAAAAATAAAAA
Found at i:80773896 original size:18 final size:18
Alignment explanation
Indices: 80773843--80773887 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
80773833 AACAATAAAC
80773843 ATAAAAATAGAAATAATAAA
1 ATAAAAATA-AAATAA-AAA
80773863 ATAAAAATAAAATAAAAA
1 ATAAAAATAAAATAAAAA
80773881 ATAAAAA
1 ATAAAAA
80773888 AATGATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 10 0.40
19 6 0.24
20 9 0.36
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (18 bp):
ATAAAAATAAAATAAAAA
Found at i:80774168 original size:40 final size:40
Alignment explanation
Indices: 80774124--80774199 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
80774114 TAAAAAATAC
* * * *
80774124 CGCTATAGATCGAGCATTAGCTGCGTTTTTTCAAAAACGT
1 CGCTATAGATCAAGAATTAGCAGCGCTTTTTCAAAAACGT
*
80774164 CGCTATAGATCAAGAATTAGCAGCGCTTTTTGAAAA
1 CGCTATAGATCAAGAATTAGCAGCGCTTTTTCAAAA
80774200 CAGCCGCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (40 bp):
CGCTATAGATCAAGAATTAGCAGCGCTTTTTCAAAAACGT
Found at i:80774308 original size:40 final size:40
Alignment explanation
Indices: 80774253--80774362 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
80774243 AGCTTTAGTG
* ** *
80774253 GCATTAGCGGCGCTTTTTGAAAATTGCCGTTATAGATCGA
1 GCATTAGTGGCGCTTTTTGAAAAAAGCCGCTATAGATCGA
* *
80774293 GCATTAGTGGCGCTTTTTAAAAAAAGCCGCTATAGATTGA
1 GCATTAGTGGCGCTTTTTGAAAAAAGCCGCTATAGATCGA
* *
80774333 GCATTAGTGGCGTTTTTTGAAAAACGCCGC
1 GCATTAGTGGCGCTTTTTGAAAAAAGCCGC
80774363 AAAAAATTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
GCATTAGTGGCGCTTTTTGAAAAAAGCCGCTATAGATCGA
Found at i:80774758 original size:14 final size:14
Alignment explanation
Indices: 80774734--80774826 Score: 66
Period size: 14 Copynumber: 6.6 Consensus size: 14
80774724 TTAATTATCA
*
80774734 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
* *
80774748 ATATGGTTTAGTGT
1 TTATGGTTTAGGGT
*
80774762 TTA-GGATTTATGGT
1 TTATGG-TTTAGGGT
80774776 TTATGGTTTAGGAGT
1 TTATGGTTTAGG-GT
*
80774791 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* *
80774805 TTATGGATTACGGT
1 TTATGGTTTAGGGT
80774819 TTATGGTT
1 TTATGGTT
80774827 ATGGTTTAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
12 3 0.05
13 2 0.03
14 43 0.70
15 10 0.16
17 3 0.05
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:80774763 original size:21 final size:21
Alignment explanation
Indices: 80774734--80774826 Score: 68
Period size: 21 Copynumber: 4.4 Consensus size: 21
80774724 TTAATTATCA
* *
80774734 TTATAGTTTAGGGTATATGGT
1 TTATGGTTTAGGATATATGGT
*
80774755 TTA-GTGTTTAGGATTTATGGT
1 TTATG-GTTTAGGATATATGGT
80774776 TTATGGTTTAGGAGTTACTAT--T
1 TTATGGTTTAGGA--TA-TATGGT
* *
80774798 TTAAGGTTTATGGAT-TACGGT
1 TTATGGTTTA-GGATATATGGT
80774819 TTATGGTT
1 TTATGGTT
80774827 ATGGTTTAAG
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
19 2 0.04
21 37 0.65
22 11 0.19
23 4 0.07
24 3 0.05
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (21 bp):
TTATGGTTTAGGATATATGGT
Found at i:80774771 original size:7 final size:7
Alignment explanation
Indices: 80774734--80774834 Score: 59
Period size: 7 Copynumber: 14.4 Consensus size: 7
80774724 TTAATTATCA
*
80774734 TTATAGT
1 TTATGGT
*
80774741 TTAGGGT
1 TTATGGT
*
80774748 ATATGGT
1 TTATGGT
80774755 TTA-GTGT
1 TTATG-GT
80774762 TTA-GGAT
1 TTATGG-T
80774769 TTATGGT
1 TTATGGT
80774776 TTATGGT
1 TTATGGT
*
80774783 TTAGGAGT
1 TTATG-GT
80774791 TACTAT--T
1 T--TATGGT
*
80774798 TTAAGGT
1 TTATGGT
*
80774805 TTATGGA
1 TTATGGT
*
80774812 TTACGGT
1 TTATGGT
80774819 TTATGG-
1 TTATGGT
80774825 TTATGGT
1 TTATGGT
80774832 TTA
1 TTA
80774835 AGTGTTGGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 2 0.03
6 8 0.11
7 55 0.76
8 5 0.07
10 2 0.03
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:80774834 original size:13 final size:14
Alignment explanation
Indices: 80774802--80774834 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
80774792 ACTATTTTAA
80774802 GGTTTATGGATTAC
1 GGTTTATGGATTAC
*
80774816 GGTTTATGG-TTAT
1 GGTTTATGGATTAC
80774829 GGTTTA
1 GGTTTA
80774835 AGTGTTGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.18, C:0.03, G:0.30, T:0.48
Consensus pattern (14 bp):
GGTTTATGGATTAC
Found at i:80776106 original size:28 final size:28
Alignment explanation
Indices: 80776074--80776132 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
80776064 AAATTTGTAG
80776074 CCCAACCTTCTT-TCCTCTACT-TTTTTTC
1 CCCAACCTT-TTCTCCT-TACTCTTTTTTC
80776102 CCCAACCTTTTCTCCTTACTCTTTTTTC
1 CCCAACCTTTTCTCCTTACTCTTTTTTC
80776130 CCC
1 CCC
80776133 CGGAAATCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.10, C:0.42, G:0.00, T:0.47
Consensus pattern (28 bp):
CCCAACCTTTTCTCCTTACTCTTTTTTC
Found at i:80788925 original size:31 final size:31
Alignment explanation
Indices: 80788865--80788940 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
80788855 ACACACATAT
*
80788865 ATATACTAAATAAAATAATAAAATAATAATAA
1 ATAT-CTAATTAAAATAATAAAATAATAATAA
* *
80788897 ATATCTTATTAAAAT-ATTAAATATATAATAA
1 ATATCTAATTAAAATAATAAAATA-ATAATAA
*
80788928 TTATCTAATTAAA
1 ATATCTAATTAAA
80788941 TAACTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 7 0.18
31 27 0.71
32 4 0.11
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAAATAATAATAA
Found at i:80789207 original size:29 final size:30
Alignment explanation
Indices: 80789153--80789220 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
80789143 CACCCTTAAA
* *
80789153 ATATTTACACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTAAAATTTTC
* *
80789183 ATATTTATACT-TTAATCCTTAAAATTTTG
1 ATATTTACACTATTAATCCTTAAAATTTTC
80789212 AGTATTTAC
1 A-TATTTAC
80789221 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTAAAATTTTC
Found at i:80791310 original size:11 final size:11
Alignment explanation
Indices: 80791264--80791316 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
80791254 TTAATCTAAT
80791264 TTTTATTATTTA
1 TTTTATT-TTTA
*
80791276 TTTTAGTTTTCA
1 TTTTA-TTTTTA
*
80791288 TTCTAAATTTTTA
1 TT-T-TATTTTTA
80791301 TTTTATTTTTA
1 TTTTATTTTTA
80791312 TTTTA
1 TTTTA
80791317 ATATTTAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
11 12 0.35
12 11 0.32
13 10 0.29
14 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.72
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:80791322 original size:25 final size:26
Alignment explanation
Indices: 80791267--80791322 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
80791257 ATCTAATTTT
80791267 TATTATTTATTTTAGTTTTCATTCTAA
1 TATT-TTTATTTTAGTTTTCATTCTAA
* *
80791294 -ATTTTTATTTTA-TTTTTATTTTAA
1 TATTTTTATTTTAGTTTTCATTCTAA
80791318 TATTT
1 TATTT
80791323 AAGATAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 10 0.38
25 13 0.50
26 3 0.12
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.70
Consensus pattern (26 bp):
TATTTTTATTTTAGTTTTCATTCTAA
Found at i:80791618 original size:42 final size:43
Alignment explanation
Indices: 80791540--80791859 Score: 321
Period size: 43 Copynumber: 7.5 Consensus size: 43
80791530 AAATTTGTTT
* * * *
80791540 TAAAGGTCATGTTTTTTAGCGACATTTGT-GAGAAAAGCGCTGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGA-AAAAGCGCTGC
* *
80791583 TAAAGGTC-TGTTCTATAGTGGCGTTTGTGGCAAAAGCGCTGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCTGC
* * * *
80791625 TAAAGGTC-TGTT-TATAGCGGTGTTTGTGAAAAAACCGCTGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCTGC
* * * * * **
80791666 TAAGGGTCATGCTCTTTAGCGACGTTTGTGGGAAAAGCGCCCC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCTGC
* * * * *
80791709 TAAAGGTCATGCTCTTTAGTGGCGTTTGTGG-CAAAGCGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCTGC
* *
80791751 TAAAGGTCATGTTCTATAGCGGCATTTGTGGAAAAAGTGCCT-C
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCG-CTGC
* *
80791794 TAAAGGTCATGTTCTATAGTGGCGTTTGTGGAAAAAG-GACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCG-CTGC
*
80791837 TAAAGGTCTTGTTCTATAGCGGC
1 TAAAGGTCATGTTCTATAGCGGC
80791860 ATTTTTTTAC
Statistics
Matches: 230, Mismatches: 41, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
41 30 0.13
42 79 0.34
43 120 0.52
44 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCTGC
Found at i:80791780 original size:85 final size:86
Alignment explanation
Indices: 80791540--80791863 Score: 327
Period size: 85 Copynumber: 3.8 Consensus size: 86
80791530 AAATTTGTTT
* * * * *
80791540 TAAAGGTCATGTTTTTTAGCGACATTTGTGAGAAAAGCGCTGCTAAAGGTC-TGTTCTATAGTGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
* * **
80791604 CGTTTGTGGCAAAAGCGCTGC
66 CATTTGTGGAAAAAGCGCCCC
* * * * * * * * * *
80791625 TAAAGGTC-TGTT-TATAGCGGTGTTTGTGAAAAAACCGCTGTTAAGGGTCATGCTCTTTAGCGA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
* *
80791688 CGTTTGTGGGAAAAGCGCCCC
66 CATTTGTGGAAAAAGCGCCCC
* * *
80791709 TAAAGGTCATGCTCTTTAGTGGCGTTTGTG-GCAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
* *
80791773 CATTTGTGGAAAAAGTGCCTC
66 CATTTGTGGAAAAAGCGCCCC
* * *
80791794 TAAAGGTCATGTTCTATAGTGGCGTTTGTG-GAAAAAG-GACCGCTAAAGGTCTTGTTCTATAGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAG-AAAAGCG-CCGCTAAAGGTCATGTTCTATAGC
80791857 GGCATTT
64 GGCATTT
80791864 TTTTACATAA
Statistics
Matches: 198, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
83 29 0.15
84 39 0.20
85 83 0.42
86 47 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (86 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
CATTTGTGGAAAAAGCGCCCC
Found at i:80796000 original size:59 final size:59
Alignment explanation
Indices: 80795920--80796084 Score: 278
Period size: 59 Copynumber: 2.8 Consensus size: 59
80795910 GGTTCTTCCG
*
80795920 ACCTGCATTATAAATGTTACTATAGGGATTATTCTGAGGTCTAGAATATGGTTCCT-TCA
1 ACCTGCATTATAAGTGTTACTATAGGGATTATTCTGAGGTCTAGAATATGGTTCCTCT-A
* *
80795979 ACCTGCATTATAAGTATTACTATAGGGATTATTCTGAAGTCTAGAATATGGTTCCTCTA
1 ACCTGCATTATAAGTGTTACTATAGGGATTATTCTGAGGTCTAGAATATGGTTCCTCTA
*
80796038 ACATGCATTATAAGTGTTACTATAGGGATTATTCTGAGGTCTAGAAT
1 ACCTGCATTATAAGTGTTACTATAGGGATTATTCTGAGGTCTAGAAT
80796085 TATTACCCAT
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
59 98 0.99
60 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (59 bp):
ACCTGCATTATAAGTGTTACTATAGGGATTATTCTGAGGTCTAGAATATGGTTCCTCTA
Found at i:80801743 original size:25 final size:25
Alignment explanation
Indices: 80801714--80801761 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80801704 TTATAACATG
* * *
80801714 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
80801739 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
80801762 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:80801904 original size:23 final size:23
Alignment explanation
Indices: 80801874--80801990 Score: 175
Period size: 23 Copynumber: 5.1 Consensus size: 23
80801864 AGGAAGTGAA
*
80801874 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80801897 AAAGGGCTTATGCACCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80801920 AAAGGGCTTATG-CCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
80801942 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80801964 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
80801988 AAA
1 AAA
80801991 AGAGGCTAGG
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
22 29 0.34
23 47 0.55
24 10 0.12
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:80802007 original size:25 final size:24
Alignment explanation
Indices: 80801873--80802011 Score: 137
Period size: 23 Copynumber: 6.0 Consensus size: 24
80801863 GAGGAAGTGA
* *
80801873 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
80801897 -AAAGGGCTTATGCACCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
80801920 -AAAGGGCTTATG-CCTAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
*
80801942 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
**
80801964 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
80801988 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
80802012 ATGATAAAGC
Statistics
Matches: 103, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
22 29 0.28
23 44 0.43
24 19 0.18
25 11 0.11
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:80802245 original size:31 final size:30
Alignment explanation
Indices: 80802205--80802267 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
80802195 CGTTTACAGT
80802205 AAAGGTTCGGCCCAGTAATATGAAATATGA
1 AAAGGTTCGGCCCAGTAATATGAAATATGA
**
80802235 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGG-TTCGGCCCAGTAATATGAAATATGA
80802266 AA
1 AA
80802268 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGGTTCGGCCCAGTAATATGAAATATGA
Found at i:80803029 original size:13 final size:14
Alignment explanation
Indices: 80803011--80803055 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
80803001 TACTACCATC
80803011 ATTATT-TTATTTA
1 ATTATTATTATTTA
80803024 ATTATTATT-TTTA
1 ATTATTATTATTTA
**
80803037 A-TATTATTAACTA
1 ATTATTATTATTTA
80803050 ATTATT
1 ATTATT
80803056 TATCTTATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 7 0.26
13 14 0.52
14 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTATTATTATTTA
Found at i:80804692 original size:122 final size:121
Alignment explanation
Indices: 80804475--80804717 Score: 477
Period size: 122 Copynumber: 2.0 Consensus size: 121
80804465 GGGACTCCTA
80804475 AAATTCCTCCCTCACAACCCTCACTCATCCACTTTCTCTCCCTCCTTTCTATTTTCTTTTGTTGA
1 AAATTCCTCCCTCACAACCCTCACTCATCCACTTTCTCTCCCTCCTTTCTATTTTCTTTTGTTGA
80804540 GTTTTGATTTACGTTTTTTGTTTTATCTGAAAGCTCTGTTATTTTTTTTTTCTTTCT
66 GTTTTGATTTACGTTTTTTGTTTTATCTGAAAGCTCTGTTA-TTTTTTTTTCTTTCT
80804597 AAATTCCTCCCTCACAACCCTCACTCATCCACTTTCTCTCCCTCCTTTCTATTTTCTTTTGTTGA
1 AAATTCCTCCCTCACAACCCTCACTCATCCACTTTCTCTCCCTCCTTTCTATTTTCTTTTGTTGA
80804662 GTTTTGATTTACGTTTTTTGTTTTATCTGAAAGCTCTGTTATTTTTTTTTCTTTCT
66 GTTTTGATTTACGTTTTTTGTTTTATCTGAAAGCTCTGTTATTTTTTTTTCTTTCT
80804718 TACTTCTTGT
Statistics
Matches: 121, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 15 0.12
122 106 0.88
ACGTcount: A:0.15, C:0.26, G:0.07, T:0.52
Consensus pattern (121 bp):
AAATTCCTCCCTCACAACCCTCACTCATCCACTTTCTCTCCCTCCTTTCTATTTTCTTTTGTTGA
GTTTTGATTTACGTTTTTTGTTTTATCTGAAAGCTCTGTTATTTTTTTTTCTTTCT
Found at i:80806927 original size:15 final size:15
Alignment explanation
Indices: 80806909--80806947 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80806899 TAATTAATTA
80806909 TACTTTAGTTAACT-G
1 TACTTTAGTT-ACTCG
*
80806924 TACTTTAGTTACTCT
1 TACTTTAGTTACTCG
80806939 TACTTTAGT
1 TACTTTAGT
80806948 ACTTTCGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.51
Consensus pattern (15 bp):
TACTTTAGTTACTCG
Found at i:80808535 original size:31 final size:31
Alignment explanation
Indices: 80808497--80808557 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
80808487 TTGCTTTTTA
80808497 GGTCCTTATTGTTGAGTTCTATTGGTTTCTG
1 GGTCCTTATTGTTGAGTTCTATTGGTTTCTG
80808528 GGTCCTTATTGTTGAGTTCTATTGGTTTCT
1 GGTCCTTATTGTTGAGTTCTATTGGTTTCT
80808558 TGCTCTTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.10, C:0.13, G:0.25, T:0.52
Consensus pattern (31 bp):
GGTCCTTATTGTTGAGTTCTATTGGTTTCTG
Found at i:80816542 original size:34 final size:34
Alignment explanation
Indices: 80816499--80816568 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
80816489 GAAGCATCAC
*
80816499 TATAGATCACAAATTCTTTACCCGATTCTAGTTG
1 TATAGATCACAAATTCTTTACCCGATTCTAATTG
* *
80816533 TATAGATCACAAATTCTTTACCTGATTTTAATTG
1 TATAGATCACAAATTCTTTACCCGATTCTAATTG
80816567 TA
1 TA
80816569 CTAACACCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (34 bp):
TATAGATCACAAATTCTTTACCCGATTCTAATTG
Found at i:80819812 original size:66 final size:67
Alignment explanation
Indices: 80819714--80819842 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 67
80819704 ACATGGCATT
* * *
80819714 AGACACGCCCGTGTGTCTAGGCCGTGGCAAAA-TAGGGAATACATACTGACTT-GTTCACACGGC
1 AGACACGACCGTGTGTCCAGGCCGTGGCAAAATTA-GGAAGAC-TACTGACTTGGTTCACACGGC
80819777 TACA
64 TACA
*
80819781 AGACACGACCGTGTG-CCAGGCCGTGTG-AAAATTAGGAAGGCTACTGACTTGGTTCACACGGC
1 AGACACGACCGTGTGTCCAGGCCGTG-GCAAAATTAGGAAGACTACTGACTTGGTTCACACGGC
80819843 CAGTCACACG
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
65 9 0.16
66 29 0.53
67 17 0.31
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (67 bp):
AGACACGACCGTGTGTCCAGGCCGTGGCAAAATTAGGAAGACTACTGACTTGGTTCACACGGCTA
CA
Found at i:80824857 original size:18 final size:18
Alignment explanation
Indices: 80824836--80824872 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80824826 GGCGTATAAG
*
80824836 CCATACAGGTGTGTGGGC
1 CCATACAGGTATGTGGGC
*
80824854 CCATACGGGTATGTGGGC
1 CCATACAGGTATGTGGGC
80824872 C
1 C
80824873 TATATTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.24, G:0.38, T:0.22
Consensus pattern (18 bp):
CCATACAGGTATGTGGGC
Found at i:80830343 original size:39 final size:39
Alignment explanation
Indices: 80830293--80830600 Score: 501
Period size: 39 Copynumber: 7.9 Consensus size: 39
80830283 TACCAGTACA
* * *
80830293 AAGCCTGCGGGACTTTAACCCGAATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
80830332 AAGACTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
80830371 AAGCCTGCGGGACTTTAGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
80830410 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
80830449 AAGCCTGCGGGACTTT-GTCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAG-CCCGGATACATTTCCAGCACG
*
80830488 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCTCG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
80830527 AAACCTGCGGGACTTTGGCCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
80830566 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
80830601 TGTCTTGCAT
Statistics
Matches: 249, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
38 1 0.00
39 247 0.99
40 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:80836772 original size:39 final size:39
Alignment explanation
Indices: 80836711--80837018 Score: 490
Period size: 39 Copynumber: 7.9 Consensus size: 39
80836701 TACCTGTACA
* * *
80836711 AAGCCTGCGGGACATTAACCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
80836750 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
80836789 AAGCCTGCGGGACTTTAGCCCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
80836828 AAGCCTACGGGACTTTGGCCCGGATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
80836867 AAGCCTGTGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
80836906 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
80836945 AAGCCTGCGGGACTTTGGCCCGGATACATTGCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
80836984 AAGCCTGCGGGACTTTAGACCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
80837019 TGTCATGCAT
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 247 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:80841742 original size:43 final size:43
Alignment explanation
Indices: 80841687--80841809 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 43
80841677 ACCGAGATGT
* * *
80841687 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTAT-
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAATC
* *
80841730 GTTTACGTGTAAGGCCATGTCTGGGACATTGGCATCGTTAATC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
* * *
80841773 GATTACGTGTTAGACCCTGTCTGGGACAGTGGCATCG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
80841810 ATATGTGATA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 3 0.04
43 66 0.96
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
Found at i:80847864 original size:41 final size:41
Alignment explanation
Indices: 80847754--80847874 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 41
80847744 CTGTGCGTTT
* * * **
80847754 TGAGATGGCTTTGGCTATATAAAGCACTTAGTGTGCGA-TT
1 TGAGATAGCTTTGGCTATATGATGCACTTAGTGTGCGAGAC
** * *
80847794 TG-GAGTAGCTTCAGCTTTATG-TGGAACTTAGTGTGCGAGAC
1 TGAGA-TAGCTTTGGCTATATGAT-GCACTTAGTGTGCGAGAC
80847835 TGAGATAGCTTTGGCTATATGATGCACTTAGTGTGCGAGA
1 TGAGATAGCTTTGGCTATATGATGCACTTAGTGTGCGAGA
80847875 TAATAATAGT
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
39 2 0.03
40 27 0.43
41 31 0.49
42 3 0.05
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (41 bp):
TGAGATAGCTTTGGCTATATGATGCACTTAGTGTGCGAGAC
Found at i:80852667 original size:2 final size:2
Alignment explanation
Indices: 80852660--80852695 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
80852650 ATTGAAAGGG
*
80852660 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80852696 GTGTTAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:80857914 original size:28 final size:28
Alignment explanation
Indices: 80857882--80857946 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
80857872 ATTTACTAGA
*
80857882 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
80857910 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
80857938 ATACCCCTA
1 ATACCCCTA
80857947 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:80858153 original size:29 final size:28
Alignment explanation
Indices: 80858052--80858142 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
80858042 AGGAAGCGTC
*
80858052 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
80858080 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
80858108 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
80858137 CTGGTG
1 CTGGTG
80858143 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:80858167 original size:56 final size:55
Alignment explanation
Indices: 80858052--80858167 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
80858042 AGGAAGCGTC
* *
80858052 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCAC-AATTATCTGTT
* * * *
80858108 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACAATTATCTGT-T
80858164 CTGG
1 CTGG
80858168 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 28 0.55
57 14 0.27
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:80858706 original size:26 final size:26
Alignment explanation
Indices: 80858669--80858809 Score: 210
Period size: 26 Copynumber: 5.2 Consensus size: 26
80858659 TGATACAAAT
* *
80858669 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80858695 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
80858721 TGATAATAGGTTAGGTTAGGTAAATGTTCCA
1 TGATAAT--G---GGTTAGGTAAATGTTTCA
80858752 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80858778 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80858804 TGATAA
1 TGATAA
80858810 GAATATCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
26 80 0.75
28 1 0.01
29 1 0.01
31 24 0.23
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:80858747 original size:57 final size:57
Alignment explanation
Indices: 80858675--80858793 Score: 229
Period size: 57 Copynumber: 2.1 Consensus size: 57
80858665 AAATTGATAA
80858675 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
*
80858732 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
80858789 TAGGT
1 TAGGT
80858794 AAATGTTTCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (57 bp):
TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
Found at i:80860826 original size:135 final size:137
Alignment explanation
Indices: 80860583--80860868 Score: 513
Period size: 135 Copynumber: 2.1 Consensus size: 137
80860573 GAGTAGTCTC
80860583 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
80860648 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
80860712 ACTGTTA
131 ACTGTTA
* *
80860719 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
80860783 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
80860848 ACTGTTA
131 ACTGTTA
**
80860855 CCTGAATGGGCTTA
1 CCCAAATGGGCTTA
80860869 GGCCCAATGG
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
135 95 0.66
136 48 0.34
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTACATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:80861824 original size:18 final size:18
Alignment explanation
Indices: 80861785--80861825 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
80861775 TAATAAGGCC
* *
80861785 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
80861803 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
80861821 TTTTA
1 TTTTA
80861826 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:80862312 original size:2 final size:2
Alignment explanation
Indices: 80862305--80862330 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80862295 CTATCAATAG
80862305 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80862331 TTGTAACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80875117 original size:34 final size:35
Alignment explanation
Indices: 80875055--80875134 Score: 128
Period size: 34 Copynumber: 2.3 Consensus size: 35
80875045 CTTTTTTTCA
*
80875055 ATATTATTATTTTTAAATGTAAATTTTATATATGAT
1 ATATTATT-TTTTTAAATGTAAATTTTATATATAAT
80875091 ATATTATTTTTTTAAATGTAAA-TTTATATATAAT
1 ATATTATTTTTTTAAATGTAAATTTTATATATAAT
80875125 ATA-TATTTTT
1 ATATTATTTTT
80875135 CACTTGTGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
33 7 0.16
34 14 0.33
35 14 0.33
36 8 0.19
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (35 bp):
ATATTATTTTTTTAAATGTAAATTTTATATATAAT
Found at i:80875121 original size:36 final size:33
Alignment explanation
Indices: 80875055--80875134 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 33
80875045 CTTTTTTTCA
80875055 ATATTATTATTTTTAAATGTAAATTTTATATATGAT
1 ATATTATT-TTTTTAAATGTAAATTTTATATA--AT
80875091 ATATTATTTTTTTAAATGTAAATTTATATATAAT
1 ATATTATTTTTTTAAATGTAAATTT-TATATAAT
80875125 ATA-TATTTTT
1 ATATTATTTTT
80875135 CACTTGTGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
33 7 0.16
34 5 0.12
35 17 0.40
36 14 0.33
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (33 bp):
ATATTATTTTTTTAAATGTAAATTTTATATAAT
Found at i:80885512 original size:5 final size:5
Alignment explanation
Indices: 80885502--80885531 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
80885492 AAAATTACCT
*
80885502 TTCTC TTCTC TTCTC TTCTC TTTTC TTCTC
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC
80885532 CCCCTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (5 bp):
TTCTC
Found at i:80892670 original size:27 final size:25
Alignment explanation
Indices: 80892613--80892660 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80892603 ACGAGATAAG
* *
80892613 ACTGCTCACACAAGTTGTGAAAAGA
1 ACTGCTCACACAAGCTATGAAAAGA
*
80892638 AATGCTCACACAAGCTATGAAAA
1 ACTGCTCACACAAGCTATGAAAA
80892661 TGAGCCTGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.19
Consensus pattern (25 bp):
ACTGCTCACACAAGCTATGAAAAGA
Found at i:80894386 original size:18 final size:18
Alignment explanation
Indices: 80894363--80894422 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
80894353 CTGTTACAAA
80894363 TGGCTATAAGGCATAAGT
1 TGGCTATAAGGCATAAGT
*** *
80894381 TGGCTACTTCTTG-ATAA-A
1 TGGCTA--TAAGGCATAAGT
80894399 TGGCTATAAGGCATAAGT
1 TGGCTATAAGGCATAAGT
80894417 TGGCTA
1 TGGCTA
80894423 CTTCTTGATC
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
16 2 0.07
17 4 0.13
18 18 0.60
19 4 0.13
20 2 0.07
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (18 bp):
TGGCTATAAGGCATAAGT
Found at i:80894407 original size:36 final size:36
Alignment explanation
Indices: 80894360--80894431 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
80894350 GGGCTGTTAC
80894360 AAATGGCTATAAGGCATAAGTTGGCTACTTCTTGAT
1 AAATGGCTATAAGGCATAAGTTGGCTACTTCTTGAT
80894396 AAATGGCTATAAGGCATAAGTTGGCTACTTCTTGAT
1 AAATGGCTATAAGGCATAAGTTGGCTACTTCTTGAT
80894432 CTTCTTCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (36 bp):
AAATGGCTATAAGGCATAAGTTGGCTACTTCTTGAT
Found at i:80896173 original size:43 final size:43
Alignment explanation
Indices: 80896125--80896343 Score: 352
Period size: 43 Copynumber: 5.1 Consensus size: 43
80896115 CCAGCATTAC
*
80896125 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
80896168 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* *
80896211 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
*
80896254 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
80896297 GCCTGCTAGGCACGAAAGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
80896338 GCCTGC
1 GCCTGC
80896344 GGGATTTATC
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
41 14 0.08
42 2 0.01
43 151 0.90
ACGTcount: A:0.32, C:0.34, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
Found at i:80896363 original size:38 final size:38
Alignment explanation
Indices: 80896315--80896419 Score: 147
Period size: 38 Copynumber: 2.8 Consensus size: 38
80896305 GGCACGAAAG
* * * * *
80896315 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
80896353 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
**
80896391 CCCGGATATTTTACCAGCACGAAGCCTGC
1 CCCGGATATAATACCAGCACGAAGCCTGC
80896420 AGGTCTTTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
Found at i:80900313 original size:17 final size:18
Alignment explanation
Indices: 80900287--80900358 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 18
80900277 GATACTTGGT
*
80900287 AAAA-GGTATCAATGT-A
1 AAAATGGTATCAATATAA
*
80900303 AAAATGGTATCGATATAA
1 AAAATGGTATCAATATAA
80900321 AAAGATGGTATCAATA-AA
1 AAA-ATGGTATCAATATAA
*
80900339 ATACAATAGGTATCGATATA
1 A-A-AAT-GGTATCAATATA
80900359 TTTTGAAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
16 4 0.09
17 9 0.20
18 7 0.16
19 14 0.31
20 10 0.22
21 1 0.02
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (18 bp):
AAAATGGTATCAATATAA
Found at i:80900330 original size:19 final size:18
Alignment explanation
Indices: 80900302--80900358 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
80900292 GTATCAATGT
80900302 AAAAATGGTATCGATATA
1 AAAAATGGTATCGATATA
*
80900320 AAAAGATGGTATCAATA-A
1 AAAA-ATGGTATCGATATA
80900338 AATACAATAGGTATCGATATA
1 AA-A-AAT-GGTATCGATATA
80900359 TTTTGAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 7 0.22
19 14 0.44
20 10 0.31
21 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.16, T:0.26
Consensus pattern (18 bp):
AAAAATGGTATCGATATA
Found at i:80902084 original size:59 final size:59
Alignment explanation
Indices: 80902007--80902176 Score: 245
Period size: 59 Copynumber: 2.9 Consensus size: 59
80901997 TTGAACTTAG
** *
80902007 AAAAAAAGCTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAAGTACCAAATTG-GGC
1 AAAAAAATTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAAGTACCAAATTGAGAC
*
80902065 TAAAAAAATTTTAGGTACCAAATTAAGAAAAAGTGTCAAGTTCAAGTACCAAATTGAGAC
1 -AAAAAAATTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAAGTACCAAATTGAGAC
* * * *
80902125 AAAAAAGTTTTAAGTACCAAATTAAG-AAAAATGTCAAATTCATGTACCAAAT
1 AAAAAAATTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAAGTACCAAAT
80902177 GTTCATGTCC
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
58 23 0.23
59 76 0.75
60 2 0.02
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.24
Consensus pattern (59 bp):
AAAAAAATTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAAGTACCAAATTGAGAC
Found at i:80902432 original size:22 final size:21
Alignment explanation
Indices: 80902396--80902451 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
80902386 TAACAAATTA
*
80902396 TTTTTA-AATTTTAAAAATAC
1 TTTTTATAATTTTTAAAATAC
80902416 TTTTTATAATTTTTAAAATAC
1 TTTTTATAATTTTTAAAATAC
80902437 TTTTTATATATTTTT
1 TTTTTATA-ATTTTT
80902452 TTGAATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 6 0.18
21 21 0.64
22 6 0.18
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTATAATTTTTAAAATAC
Found at i:80903956 original size:23 final size:23
Alignment explanation
Indices: 80903874--80903960 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
80903864 CCTGATCAGT
*
80903874 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
80903896 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
80903916 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
80903939 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
80903961 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:80905209 original size:23 final size:23
Alignment explanation
Indices: 80905183--80905226 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
80905173 TTTTTTGTTG
*
80905183 TTTTTTT-TCTTAAAAAAAAGAT
1 TTTTTTTATCATAAAAAAAAGAT
*
80905205 TTTTTTTATGATAAAAAAAAGA
1 TTTTTTTATCATAAAAAAAAGA
80905227 GAAAATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (23 bp):
TTTTTTTATCATAAAAAAAAGAT
Found at i:80905300 original size:79 final size:79
Alignment explanation
Indices: 80905215--80905383 Score: 207
Period size: 79 Copynumber: 2.1 Consensus size: 79
80905205 TTTTTTTATG
* * *
80905215 ATAAAAAAAAGAGAAAATAAAGTATGGTTTTAATTAATAATAAAAACAAATTAGTAT-GGAGAAA
1 ATAAAAAAAAGAGAAAATAAAGAATAGTTTTAATTAATAATAAAAACAAAATAGTATGGGAG-AA
80905279 TAGTTTTAATTAATA
65 TAGTTTTAATTAATA
* ** *** *
80905294 ATAAAAACAAA-ATAGTATGGGGAATAGTTTTAATTAATAATAAAAACAAAATAGTATGGGAGAG
1 ATAAAAA-AAAGAGAAAATAAAGAATAGTTTTAATTAATAATAAAAACAAAATAGTATGGGAGAA
80905358 TAGTTTTAATTAATA
65 TAGTTTTAATTAATA
*
80905373 ATAAAACAAAG
1 ATAAAAAAAAG
80905384 TAGCATGGGG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.04
79 66 0.87
80 7 0.09
ACGTcount: A:0.54, C:0.02, G:0.14, T:0.29
Consensus pattern (79 bp):
ATAAAAAAAAGAGAAAATAAAGAATAGTTTTAATTAATAATAAAAACAAAATAGTATGGGAGAAT
AGTTTTAATTAATA
Found at i:80905331 original size:39 final size:39
Alignment explanation
Indices: 80905241--80905395 Score: 240
Period size: 39 Copynumber: 3.9 Consensus size: 39
80905231 ATAAAGTATG
* *
80905241 GTTTTAATTAATAATAAAAACAAATTAGTATGGAGAAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGG-GGAATA
80905281 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
*
80905320 GTTTTAATTAATAATAAAAACAAAATAGTATGGGAGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGG-GAATA
* *
80905360 GTTTTAATTAATAAT-AAAACAAAGTAGCATGGGGAA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAA
80905396 GTGGAATCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.02
39 55 0.51
40 51 0.47
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
Done.