Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 263 of 425
Found at i:80907240 original size:15 final size:15
Alignment explanation
Indices: 80907215--80907272 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
80907205 TCATATATAT
80907215 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
80907231 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
80907246 AATAATTTCAATCAA
1 TATAAATTCAATCAA
80907261 TATAAATTCAAT
1 TATAAATTCAAT
80907273 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:80907607 original size:5 final size:5
Alignment explanation
Indices: 80907594--80907650 Score: 87
Period size: 5 Copynumber: 11.0 Consensus size: 5
80907584 TTCTTTAGTT
*
80907594 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TTAAAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA -TATAA
80907646 TATAA
1 TATAA
80907651 AGTATCTTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
5 40 0.83
6 8 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:80908241 original size:19 final size:19
Alignment explanation
Indices: 80908191--80908241 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
80908181 ATTGTACCAT
80908191 TATTTATATTTTTAAATATC
1 TATTTA-ATTTTTAAATATC
*
80908211 TATTTTAA-TTTT-AATAGTG
1 TA-TTTAATTTTTAAATA-TC
80908230 TATTTAATTTTT
1 TATTTAATTTTT
80908242 TATAATAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 9 0.33
19 11 0.41
20 3 0.11
21 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (19 bp):
TATTTAATTTTTAAATATC
Found at i:80908408 original size:3 final size:3
Alignment explanation
Indices: 80908400--80908436 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
80908390 ATATATATAT
80908400 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80908437 AAGCAAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80909395 original size:20 final size:20
Alignment explanation
Indices: 80909358--80909397 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80909348 AAGCAAATTA
*
80909358 ATTTTTTAAAAATTCAAAAT
1 ATTTTTTAAAAATCCAAAAT
*
80909378 ATTTTTTAAAACTCCAAAAT
1 ATTTTTTAAAAATCCAAAAT
80909398 TTATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTTTTTAAAAATCCAAAAT
Found at i:80909697 original size:20 final size:21
Alignment explanation
Indices: 80909674--80909720 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
80909664 CTGATTCAAA
* *
80909674 TAATTTTACTC-AATTCAATT
1 TAATTTGACTCAAATTAAATT
*
80909694 TAATTCGACTCAAATTAAATT
1 TAATTTGACTCAAATTAAATT
80909715 TAATTT
1 TAATTT
80909721 CATTCAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATTTGACTCAAATTAAATT
Found at i:80909727 original size:21 final size:21
Alignment explanation
Indices: 80909681--80909719 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80909671 AAATAATTTT
*
80909681 ACTC-AATTCAATTTAATTCG
1 ACTCAAATTAAATTTAATTCG
80909701 ACTCAAATTAAATTTAATT
1 ACTCAAATTAAATTTAATT
80909720 TCATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (21 bp):
ACTCAAATTAAATTTAATTCG
Found at i:80919976 original size:13 final size:14
Alignment explanation
Indices: 80919949--80919994 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
80919939 CTTACTTGAT
*
80919949 AATATTTAAAATTTA
1 AATA-TTAAATTTTA
80919964 AA-ATTAAATTTTA
1 AATATTAAATTTTA
*
80919977 AATTTTAAATTTTA
1 AATATTAAATTTTA
80919991 AATA
1 AATA
80919995 CAATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 11 0.41
14 14 0.52
15 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATATTAAATTTTA
Found at i:80919993 original size:7 final size:7
Alignment explanation
Indices: 80919953--80919993 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
80919943 CTTGATAATA
*
80919953 TTTAAAA
1 TTTAAAT
80919960 TTTAAA-
1 TTTAAAT
*
80919966 ATTAAAT
1 TTTAAAT
80919973 TTTAAAT
1 TTTAAAT
80919980 TTTAAAT
1 TTTAAAT
80919987 TTTAAAT
1 TTTAAAT
80919994 ACAATTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (7 bp):
TTTAAAT
Found at i:80922103 original size:3 final size:3
Alignment explanation
Indices: 80922095--80922147 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
80922085 GTAAACCTCC
80922095 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80922143 TAT TA
1 TAT TA
80922148 GTACTAGTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:80922277 original size:23 final size:23
Alignment explanation
Indices: 80922247--80922452 Score: 143
Period size: 23 Copynumber: 8.3 Consensus size: 23
80922237 ATCATTTCTA
*
80922247 ATATATA-TATCGTATATGTTTTT
1 ATATATATTAT-GTATATATTTTT
80922270 ATATATATTATGTATATATTTTT
1 ATATATATTATGTATATATTTTT
80922293 A-ATATTATTA-GTTATATATTTTT
1 ATATA-TATTATG-TATATATTTTT
80922316 -TATACTATTTCATGTATATATTTTT
1 ATATA-TA-TT-ATGTATATATTTTT
*
80922341 ATATTATCTTATGTAAATATATTTTTT
1 ATA-TATATTATGT--ATATA-TTTTT
*
80922368 AATAATTATATTATGTATATATTTTA
1 -AT-A-TATATTATGTATATATTTTT
** * *
80922394 ACGCTATATTAGGTACATATTTTT
1 A-TATATATTATGTATATATTTTT
80922418 AATACTATTATTATGT-TCATATTTTAT
1 -ATA-TA-TATTATGTAT-ATATTTT-T
80922445 ATATATAT
1 ATATATAT
80922453 ATATACATAT
Statistics
Matches: 149, Mismatches: 14, Indels: 39
0.74 0.07 0.19
Matches are distributed among these distances:
22 4 0.03
23 40 0.27
24 29 0.19
25 20 0.13
26 30 0.20
27 13 0.09
28 2 0.01
29 11 0.07
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.56
Consensus pattern (23 bp):
ATATATATTATGTATATATTTTT
Found at i:80922382 original size:29 final size:25
Alignment explanation
Indices: 80922259--80922454 Score: 138
Period size: 24 Copynumber: 7.8 Consensus size: 25
80922249 ATATATATCG
80922259 TATATGTTTTTATA-TATATTATGTA
1 TATAT-TTTTTATATTATATTATGTA
*
80922284 TATATTTTTAATA-T-TATTA-GTTA
1 TATATTTTTTATATTATATTATG-TA
*
80922307 TATATTTTTTATACTAT-TTCATGTA
1 TATATTTTTTATATTATATT-ATGTA
*
80922332 TATA-TTTTTATATTATCTTATGTAAA
1 TATATTTTTTATATTATATTATGT--A
80922358 TATATTTTTTAATAATTATATTATGTA
1 TATATTTTTT-AT-ATTATATTATGTA
* *** *
80922385 TATA-TTTTAACGCTATATTAGGTA
1 TATATTTTTTATATTATATTATGTA
* * *
80922409 CATATTTTTAATACTATTATTATGT-
1 TATATTTTTTATATTA-TATTATGTA
*
80922434 TCATATTTTATATATATATAT
1 T-ATATTTTTTATAT-TATAT
80922455 ATACATATGT
Statistics
Matches: 139, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.01
23 19 0.14
24 39 0.28
25 25 0.18
26 30 0.22
27 12 0.09
28 2 0.01
29 11 0.08
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (25 bp):
TATATTTTTTATATTATATTATGTA
Found at i:80922452 original size:50 final size:49
Alignment explanation
Indices: 80922258--80922452 Score: 161
Period size: 50 Copynumber: 3.9 Consensus size: 49
80922248 TATATATATC
*
80922258 GTATATGTTTTT-ATA-TA-TATTATGTATATATTTTTA-ATATTATTAG
1 GTATATATTTTTAATACTATTATTATGTATATATTTTTATATA-TATTAG
* * * * *
80922304 TTATATATTTTTTATACTATT-TCATGTATATATTTTTATATTATCTTAT
1 GTATATATTTTTAATACTATTATTATGTATATATTTTTATA-TATATTAG
* * **
80922353 GTAAATATATTTTTTAATAAT-TATATTATGTATATATTTTAACGCTATATTAG
1 GT--ATATA-TTTTTAATACTAT-TATTATGTATATATTTTTA-TATATATTAG
*
80922406 GTACATATTTTTAATACTATTATTATGT-TCATATTTTATATATATAT
1 GTATATATTTTTAATACTATTATTATGTAT-ATATTTT-TATATATAT
80922453 ATATACATAT
Statistics
Matches: 116, Mismatches: 19, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
46 10 0.09
47 3 0.03
48 18 0.16
49 8 0.07
50 32 0.28
51 12 0.10
52 10 0.09
53 23 0.20
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (49 bp):
GTATATATTTTTAATACTATTATTATGTATATATTTTTATATATATTAG
Found at i:80923467 original size:22 final size:22
Alignment explanation
Indices: 80923437--80923490 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
80923427 TCCAAAGAAT
80923437 AACAACAAAATGGCAGCAAAAC
1 AACAACAAAATGGCAGCAAAAC
* * *
80923459 AGCAGCAAAATGGTAGCAAAAC
1 AACAACAAAATGGCAGCAAAAC
80923481 AACAACAAAA
1 AACAACAAAA
80923491 AAAAGTTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (22 bp):
AACAACAAAATGGCAGCAAAAC
Found at i:80924013 original size:19 final size:19
Alignment explanation
Indices: 80923989--80924027 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
80923979 TTTAAAAGTA
80923989 ATTTGTAATTAAATTTAGC
1 ATTTGTAATTAAATTTAGC
80924008 ATTTGTAATTAAATTTAGC
1 ATTTGTAATTAAATTTAGC
80924027 A
1 A
80924028 GAGCTAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
ATTTGTAATTAAATTTAGC
Found at i:80924035 original size:19 final size:19
Alignment explanation
Indices: 80923993--80924036 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
80923983 AAAGTAATTT
**
80923993 GTAATTAAATTTAGCATTT
1 GTAATTAAATTTAGCATGA
80924012 GTAATTAAATTTAGCA-GA
1 GTAATTAAATTTAGCATGA
80924030 GCTAATT
1 G-TAATT
80924037 GACACAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.41
Consensus pattern (19 bp):
GTAATTAAATTTAGCATGA
Found at i:80937503 original size:44 final size:44
Alignment explanation
Indices: 80937342--80938134 Score: 451
Period size: 44 Copynumber: 17.9 Consensus size: 44
80937332 AGGTTGAAAT
* * ** * * * *
80937342 TACAAGTCTTATCTCCCTGAAAATACAGTGGAGTAGATTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * *
80937386 TAGCAAATCTTATCTCTCTGAAGTTGTAGCAGAACAGATTGAAGA
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* *
80937431 TAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAGC
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * * * * * * *
80937476 TATAAACCTTATCTCCCTGAAGGTGTAGTGGAGCAGGTTGAAGT
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * * *
80937520 TACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * *
80937564 TAGCAAATCTCATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAGC
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * * *
80937609 TATAAATCTTATCTCTCTGAAGTTACAGTGGAGCAGGTTGAAA-T
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAGA
* * * *
80937653 TACAAGTCTTATCTCCCTGAAGATGCAGTAGAGCAGATTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * *
80937697 TAGCAAATTTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGC
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * * ** * * *
80937742 TATAAA-CTTTATCTCCCTAAAGTTGCAGCAGAATAGGTTGAAGT
1 TACAAATC-TTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * *
80937786 TACAAGTCTTATCTCCCTGAAGTTGTAGT-GAAGCAGATTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTAG-AGCAGATTAAAGA
* * * * * *
80937830 TGCGAATCTTATTTC-CTTGAAGTTGCAGT-GAAACAAATTAAAGC
1 TACAAATCTTATCTCTC-TGAAGTTGCAGTAG-AGCAGATTAAAGA
* * * * * *
80937874 TACAAGTGAATCTTATCTACT-TGAAATTGTAGAAGGGCAGATTCAAGC
1 TAC-A---AATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATTAAAGA
* * * *
80937922 CACAAATATTATCT-TCTTGAAGTTGCAGTGGAGCAGATTGAAGA
1 TACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATTAAAGA
** * * * *
80937966 TAGTGAATCTTATCTCCCTGAAGTTGCAG-AGGAGTAAATTCAAG-
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTA-GAGCAGATTAAAGA
* * * * *
80938010 -CCAAAACTTATCT-TCCTGAAGTTGCAGTGGAGTAGATTGAAGA
1 TACAAATCTTATCTCT-CTGAAGTTGCAGTAGAGCAGATTAAAGA
* * ** * * *
80938053 TACAAATCTCATCTC-CTTAAAGTTGCAGCGGAACAGATTGAAGC
1 TACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATTAAAGA
* * * * *
80938097 TACAAGTTTTATCTC-CTTGAAATTGCAGTGGAGTAGAT
1 TACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGAT
80938135 CGAAGCAACA
Statistics
Matches: 580, Mismatches: 142, Indels: 54
0.75 0.18 0.07
Matches are distributed among these distances:
42 33 0.06
43 5 0.01
44 326 0.56
45 183 0.32
46 1 0.00
47 1 0.00
48 29 0.05
49 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGA
Found at i:80937579 original size:133 final size:133
Alignment explanation
Indices: 80937349--80938125 Score: 735
Period size: 133 Copynumber: 5.8 Consensus size: 133
80937339 AATTACAAGT
** * * * * *
80937349 CTTATCTCCCTGAAAATACAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAGTTGCA
** * * *
80937414 GCAGAACAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAGCTAT
65 GTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTAT
80937479 AAAC
130 AAAC
* * * * *
80937483 CTTATCTCCCTGAAGGTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* *
80937548 TGGAGCAGATTGAAGATAGCAAATCTCATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAGCTATA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
*
80937613 AAT
131 AAC
* * * * * *
80937616 CTTATCTCTCTGAAGTTACAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTGAAGATGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * *
80937681 TAGAGCAGATTGAAGATAGCAAATTTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
80937746 AAC
131 AAC
* * ** ** * * *
80937749 TTTATCTCCCTAAAGTTGCAGCAGAATAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * *
80937814 TGAAGCAGATTGAAGAT-GCGAATCTTATTTC-CTTGAAGTTGCAGT-GAAACAAATTAAAGCTA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTC-TGAAGTTGCAGTAG-AGCAAATTAAAGCT-
* *
80937876 CAAGTGAAT
128 --A-TAAAC
* * * * * * ** * * *
80937885 CTTATCTACTTGAAATTGTAGAAGG-GCAGATTCAAGCCACAAATATTATCTTCTTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAG-TGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCA
** * * * *
80937949 GTGGAGCAGATTGAAGATAGTGAATCTTATCTCCCTGAAGTTGCAG-AGGAGTAAATTCAAGCCA
65 GTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTA-GAGCAAATTAAAGCTA
80938013 -AAA-
129 TAAAC
* * * * * *
80938016 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTCATCTCCTTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * * * *
80938081 CGGAACAGATTGAAGCTA-CAAGTTTTATCTC-CTTGAAATTGCAGT
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTC-TGAAGTTGCAGT
80938126 GGAGTAGATC
Statistics
Matches: 528, Mismatches: 101, Indels: 31
0.80 0.15 0.05
Matches are distributed among these distances:
129 1 0.00
130 21 0.04
131 66 0.12
132 37 0.07
133 270 0.51
134 33 0.06
135 1 0.00
136 63 0.12
137 34 0.06
138 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (133 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
AAC
Found at i:80938008 original size:89 final size:88
Alignment explanation
Indices: 80937313--80938139 Score: 590
Period size: 89 Copynumber: 9.3 Consensus size: 88
80937303 ATCCCACACC
* * * * ** * *
80937313 CTTGAAGTTGTAGTGGAGTAGGTTGAA-ATTACAAGTCTTATCTCCCTGAAAATACAGTGGAGTA
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGA-TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*
80937377 GATTGAAGATAGCAAATCTTATC-T
65 GATTGAAGCTA-CAAATCTTATCTT
* ** * * * *
80937401 CTCTGAAGTTGTAGCAGAACAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGC
1 CT-TGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
80937466 AGATTAAAGCTATAAACCTTATCTC
64 AGATTGAAGCTACAAATCTTATCTT
* * * * * * *
80937491 CCTGAAGGTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAG
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* *
80937556 ATTGAAGATAGCAAATCTCATC-T
66 ATTGAAGCTA-CAAATCTTATCTT
* * * * * * * *
80937579 CTCTAAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCTTATCTCTCTGAAGTTACAGTGGAGCA
1 CT-TGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* ** * *
80937644 GGTTGAAATTACAAGTCTTATCTC
65 GATTGAAGCTACAAATCTTATCTT
* * * * *
80937668 CCTGAAGATGCAGTAGAGCAGATTGAAGATAGCAAATTTTATCTCTCTGAAGTTGCAGTGGAGCA
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * *
80937733 GATTAAAGCTATAAA-CTTTATCTC
65 GATTGAAGCTACAAATC-TTATCTT
* * ** ** * * * * *
80937757 CCTAAAGTTGCAGCAGAATAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAG
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * *
80937822 ATTGAAGATGCGAATCTTAT-TT
66 ATTGAAGCTACAAATCTTATCTT
* * * * * * * * * *
80937844 CCTTGAAGTTGCAGTGAAACAAATTAAAGCTACAAGTGAATCTTATCTACTTGAAATTGTAGAAG
1 -CTTGAAGTTGCAGTGGAGCAGATTGAAGATAC-A---AATCTTATCTCCCTGAAGTTGCAG-TG
* * *
80937909 G-GCAGATTCAAGCCACAAATATTATCTT
60 GAGCAGATTGAAGCTACAAATCTTATCTT
** * *
80937937 CTTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATCTTATCTCCCTGAAGTTGCAGAGGAGTA
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * *
80938002 AATTCAAGC--CAAAACTTATCTT
65 GATTGAAGCTACAAATCTTATCTT
* * * * * * *
80938024 CCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTCATCTCCTTAAAGTTGCAGCGGAACAG
1 CTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * *
80938089 ATTGAAGCTACAAGTTTTATCTC
66 ATTGAAGCTACAAATCTTATCTT
* * *
80938112 CTTGAAATTGCAGTGGAGTAGATCGAAG
1 CTTGAAGTTGCAGTGGAGCAGATTGAAG
80938140 CAACAATTTC
Statistics
Matches: 573, Mismatches: 145, Indels: 42
0.75 0.19 0.06
Matches are distributed among these distances:
86 32 0.06
87 41 0.07
88 175 0.31
89 222 0.39
90 36 0.06
92 64 0.11
93 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (88 bp):
CTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
ATTGAAGCTACAAATCTTATCTT
Found at i:80938078 original size:223 final size:223
Alignment explanation
Indices: 80937700--80938103 Score: 510
Period size: 223 Copynumber: 1.8 Consensus size: 223
80937690 TTGAAGATAG
* *
80937700 CAAATTTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAACTTTATCTCCCTAAAGT
1 CAAATATTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAACTTTATCTCCCTAAAGT
** * ** *
80937765 TGCAGCAGAATAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGA
66 TGCAGCAGAATAAATTCAAG-TACAAAACTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGA
* * * * * *
80937830 TGCGAATCTTATTTCCTTGAAGTTGCAGTGAAACAAATTAAAGCTACAAGTGAATCTTATCTACT
130 TACAAATCTCATCTCCTTAAAGTTGCAGCGAAACAAATTAAAGCTACAAGTGAATCTTATCTACT
80937895 TGAAATTGTAGAAGGGCAGATTCAAGCCA
195 TGAAATTGTAGAAGGGCAGATTCAAGCCA
* * *
80937924 CAAATATTATCT-TCTTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAA-TCTTATCTCCCTGA
1 CAAATATTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGATA-TAAACT-TTATCTCCCTAA
* * * * *
80937987 AGTTGCAG-AGGAGTAAATTCAAG-CCAAAACTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGA
63 AGTTGCAGCA-GAATAAATTCAAGTACAAAACTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGA
* * *
80938050 AGATACAAATCTCATCTCCTTAAAGTTGCAGCGGAACAGATTGAAGCTACAAGT
127 AGATACAAATCTCATCTCCTTAAAGTTGCAGCGAAACAAATTAAAGCTACAAGT
80938104 TTTATCTCCT
Statistics
Matches: 151, Mismatches: 25, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
223 80 0.53
224 40 0.26
225 31 0.21
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (223 bp):
CAAATATTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAACTTTATCTCCCTAAAGT
TGCAGCAGAATAAATTCAAGTACAAAACTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGAT
ACAAATCTCATCTCCTTAAAGTTGCAGCGAAACAAATTAAAGCTACAAGTGAATCTTATCTACTT
GAAATTGTAGAAGGGCAGATTCAAGCCA
Found at i:80939553 original size:15 final size:16
Alignment explanation
Indices: 80939514--80939555 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
80939504 CTTTACCTAT
*
80939514 TTTTATTTTAAATTTAG
1 TTTTA-TTTATATTTAG
*
80939531 TATTATTTATATTT-G
1 TTTTATTTATATTTAG
80939546 TTTTATTTAT
1 TTTTATTTAT
80939556 TTATTTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 10 0.45
16 8 0.36
17 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (16 bp):
TTTTATTTATATTTAG
Found at i:80939668 original size:69 final size:64
Alignment explanation
Indices: 80939484--80939675 Score: 201
Period size: 69 Copynumber: 2.9 Consensus size: 64
80939474 TTTATCTTAC
* *
80939484 TTATTTATTTATTTATTATTC-TTTACCTATTTT-TAT-TTTAAATTTAGTATTATTTATATTTG
1 TTATATATTTATTTATTATTCTTTTA-CT-TTTTAAATATTTAAATTTA-TATTATTTATATTTG
80939546 TT
63 TT
* * * * *
80939548 TTATTTATTTATTTATTATTCTTTCACTTTTTAAATACCTAAAATTAATATTATTTATATTTGTT
1 TTATATATTTATTTATTATTCTTTTACTTTTTAAATA-TTTAAATTTATATTATTTATATTTG-T
80939613 AT
64 -T
* *
80939615 ATCTATATATTTATTTATTATTCTTTTACTTTTTAAATATTTAAGTTTTATATTACTTATA
1 -T-TATATATTTATTTATTATTCTTTTACTTTTTAAATATTTAA-ATTTATATTATTTATA
80939676 CTTCCTTTTC
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
63 4 0.04
64 25 0.23
65 18 0.17
66 8 0.07
67 1 0.01
68 4 0.04
69 47 0.44
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (64 bp):
TTATATATTTATTTATTATTCTTTTACTTTTTAAATATTTAAATTTATATTATTTATATTTGTT
Found at i:80945766 original size:258 final size:258
Alignment explanation
Indices: 80945309--80945822 Score: 992
Period size: 258 Copynumber: 2.0 Consensus size: 258
80945299 TTGAAACCAC
80945309 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
1 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
*
80945374 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
66 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTATTTCT
80945439 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
131 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
80945504 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
196 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
*
80945567 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGTCTGTATAATCCTATTTTGCGTAGATAG
1 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
80945632 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTATTTCT
66 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTATTTCT
*
80945697 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCTATGATGTATGTTCCTTTTAAGTTGA
131 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
*
80945762 TTTACGTGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCC
196 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCC
80945823 CAAGCATTTC
Statistics
Matches: 252, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
258 252 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (258 bp):
GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTATTTCT
CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
Found at i:80950636 original size:23 final size:23
Alignment explanation
Indices: 80950581--80950639 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
80950571 AATTTTTTAT
*
80950581 ATAAAATAAATTTAAAAAATATA
1 ATAAAATAAATATAAAAAATATA
* *
80950604 ATATATTAAATATAATAAAA-ATA
1 ATAAAATAAATATAA-AAAATATA
*
80950627 TTAAAATAAATAT
1 ATAAAATAAATAT
80950640 TTTTAATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAAAATAAATATAAAAAATATA
Found at i:80950639 original size:32 final size:33
Alignment explanation
Indices: 80950596--80950659 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
80950586 ATAAATTTAA
80950596 AAAATATAATATATTAAATATAA-TAAAAATATT
1 AAAATATAATATATTAAATA-AATTAAAAATATT
* *
80950629 AAAATA-AATATTTTTAATAAATTAAAAATAT
1 AAAATATAATATATTAAATAAATTAAAAATAT
80950660 ATTAAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 2 0.07
32 20 0.71
33 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (33 bp):
AAAATATAATATATTAAATAAATTAAAAATATT
Found at i:80950669 original size:18 final size:17
Alignment explanation
Indices: 80950603--80950668 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
80950593 TAAAAAATAT
*
80950603 AATATATTAAATATAATA
1 AATATATTAAAAATAA-A
*
80950621 AAAATATT-AAAATAAA
1 AATATATTAAAAATAAA
* *
80950637 TAT-TTTTAATAAATTAAA
1 AATATATTAA-AAA-TAAA
80950655 AATATATTAAAAAT
1 AATATATTAAAAAT
80950669 TTTATTTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 10 0.27
18 16 0.43
19 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATATTAAAAATAAA
Found at i:80950761 original size:61 final size:62
Alignment explanation
Indices: 80950647--80950770 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 62
80950637 TATTTTTAAT
** *
80950647 AAATTAAAAATATATTAAAAATTTTATTTATATTTACATAACACTAAAATAGTTATAATTTA
1 AAATTAAAAATATATTAAAAAAGTTATTTATATTTAAATAACACTAAAATAGTTATAATTTA
* *
80950709 AAATTAAAAATATATTAAAAAAGTT-TTTATATTTAAATAAGACTAAGATAGTTATAATTTA
1 AAATTAAAAATATATTAAAAAAGTTATTTATATTTAAATAACACTAAAATAGTTATAATTTA
80950770 A
1 A
80950771 CAAATAAATA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 34 0.60
62 23 0.40
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.40
Consensus pattern (62 bp):
AAATTAAAAATATATTAAAAAAGTTATTTATATTTAAATAACACTAAAATAGTTATAATTTA
Found at i:80950799 original size:11 final size:11
Alignment explanation
Indices: 80950785--80950872 Score: 68
Period size: 11 Copynumber: 7.9 Consensus size: 11
80950775 TAAATATCTC
*
80950785 TAAAATAATAT
1 TAAAATAATAA
80950796 TAAAATTAATAA
1 TAAAA-TAATAA
*
80950808 TAAAATAAAAA
1 TAAAATAATAA
* ** *
80950819 TTATTTAATAT
1 TAAAATAATAA
*
80950830 TTAAATAATAA
1 TAAAATAATAA
* *
80950841 TAATATAGTAA
1 TAAAATAATAA
*
80950852 TAATATAATAA
1 TAAAATAATAA
*
80950863 AAAAATAATA
1 TAAAATAATA
80950873 GCAAAACAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
11 50 0.83
12 10 0.17
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:80950817 original size:89 final size:88
Alignment explanation
Indices: 80950701--80950869 Score: 207
Period size: 89 Copynumber: 1.9 Consensus size: 88
80950691 TAAAATAGTT
* * * *
80950701 ATAATTTAAAATTAAAAATATATTAAAAAAGTT-TTT-ATATTTAAATAAGACTAAGATAGTTAT
1 ATAATTTAAAATTAAAAATAAAAT-AAAAA-TTATTTAATATTTAAATAAGAATAAGATAGTAAT
* *
80950764 AATTTAACAAATAAATATCTCTAAA
64 AATATAACAAAAAAATATCTCTAAA
* * *
80950789 ATAATATTAAAATTAATAATAAAATAAAAATTATTTAATATTTAAATAATAATAATATAGTAATA
1 ATAAT-TTAAAATTAAAAATAAAATAAAAATTATTTAATATTTAAATAAGAATAAGATAGTAATA
*
80950854 ATATAATAAAAAAATA
65 ATATAACAAAAAAATA
80950870 ATAGCAAAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
87 2 0.03
88 13 0.19
89 53 0.78
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (88 bp):
ATAATTTAAAATTAAAAATAAAATAAAAATTATTTAATATTTAAATAAGAATAAGATAGTAATAA
TATAACAAAAAAATATCTCTAAA
Found at i:80950861 original size:33 final size:34
Alignment explanation
Indices: 80950789--80950861 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 34
80950779 TATCTCTAAA
*
80950789 ATAATATTAAAATTAATAATAAAATAAAAATTAT
1 ATAATATTAAAATTAATAATAAAATAAAAATAAT
* * * **
80950823 TTAATATTTAAA-TAATAATAATATAGTAATAAT
1 ATAATATTAAAATTAATAATAAAATAAAAATAAT
80950856 ATAATA
1 ATAATA
80950862 AAAAAATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
33 22 0.69
34 10 0.31
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (34 bp):
ATAATATTAAAATTAATAATAAAATAAAAATAAT
Found at i:80950958 original size:6 final size:6
Alignment explanation
Indices: 80950947--80951007 Score: 68
Period size: 6 Copynumber: 10.2 Consensus size: 6
80950937 AAATAAGTTG
* * ** *
80950947 GCCCAT GCCCAT GCCCAT GTCCAT ACCCAT GCCCAT GTACAT GCACAT
1 GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT
*
80950995 GCCCAT GCACAT G
1 GCCCAT GCCCAT G
80951008 ACATTGACTC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.23, C:0.41, G:0.16, T:0.20
Consensus pattern (6 bp):
GCCCAT
Found at i:80950975 original size:18 final size:18
Alignment explanation
Indices: 80950949--80951001 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
80950939 ATAAGTTGGC
80950949 CCATGCCCATGCCCATGT
1 CCATGCCCATGCCCATGT
*
80950967 CCATACCCATGCCCATGT
1 CCATGCCCATGCCCATGT
* *
80950985 ACATGCACATGCCCATG
1 CCATGCCCATGCCCATG
80951002 CACATGACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.21
Consensus pattern (18 bp):
CCATGCCCATGCCCATGT
Found at i:80954618 original size:37 final size:37
Alignment explanation
Indices: 80954565--80954667 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
80954555 TCGAATAGTC
*
80954565 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80954602 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80954639 CCGCACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80954668 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80954894 original size:48 final size:48
Alignment explanation
Indices: 80954837--80955133 Score: 431
Period size: 48 Copynumber: 6.5 Consensus size: 48
80954827 CTAGCCGAAT
*
80954837 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
80954885 CATTAGCCATTCGGCTTTACCACATATACATATCTCATAC----GT--
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
80954927 --GT-G--AAT-GGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
80954969 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
80955017 CACTAGCCATTCGGCTTTACCAC-TATACATATCTCATAGATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
80955064 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
80955112 CATTAGCCATTCGGCTTTACCA
1 CACTAGCCATTCGGCTTTACCA
80955134 TACACATATA
Statistics
Matches: 225, Mismatches: 11, Indels: 26
0.86 0.04 0.10
Matches are distributed among these distances:
36 28 0.12
37 2 0.01
39 1 0.00
40 2 0.01
44 2 0.01
45 1 0.00
47 48 0.21
48 141 0.63
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:80954990 original size:84 final size:89
Alignment explanation
Indices: 80954838--80955104 Score: 348
Period size: 84 Copynumber: 3.0 Consensus size: 89
80954828 TAGCCGAATC
* * *
80954838 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTT
1 ACTAG-CAATCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
80954903 ACCACATATACATATCTCATAC-GT
65 ACCACATATACATATCTCATACAGT
*
80954927 -GT-G-AAT-GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 ACTAGCAATCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
80954988 CCACGTATACATATCTCATACATATTT
66 CCACATATACATATCTCATAC--A-GT
* *
80955015 CACACTAGCCATTCGGCTTTACCAC-TATACATATCTCATAGATATTTCACACTAGCCATTCGGC
1 ---ACTAG-CAATCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
80955079 TTTACCACATATACATATCTCATACA
62 TTTACCACATATACATATCTCATACA
80955105 TATTTCACAT
Statistics
Matches: 156, Mismatches: 10, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
84 73 0.47
85 2 0.01
87 1 0.01
88 2 0.01
92 1 0.01
93 2 0.01
95 64 0.41
96 11 0.07
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (89 bp):
ACTAGCAATCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
CCACATATACATATCTCATACAGT
Found at i:80955044 original size:95 final size:95
Alignment explanation
Indices: 80954933--80955142 Score: 368
Period size: 95 Copynumber: 2.2 Consensus size: 95
80954923 ACGTGTGAAT
*
80954933 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATAC
1 GGCTTTACCAC-TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
80954998 ATATCTCATACATATTTCACACTAGCCATTC
65 ATATCTCATACATATTTCACACTAGCCATTC
*
80955029 GGCTTTACCACTATACATATCTCATAGATATTTCACACTAGCCATTCGGCTTTACCACATATACA
1 GGCTTTACCACTATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
*
80955094 TATCTCATACATATTTCACATTAGCCATTC
66 TATCTCATACATATTTCACACTAGCCATTC
*
80955124 GGCTTTACCA-TACACATAT
1 GGCTTTACCACTATACATAT
80955143 ATATTTATCT
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 8 0.07
95 91 0.83
96 11 0.10
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (95 bp):
GGCTTTACCACTATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
TATCTCATACATATTTCACACTAGCCATTC
Found at i:80958745 original size:29 final size:29
Alignment explanation
Indices: 80958686--80958818 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
80958676 CTGACTGATT
* * *
80958686 TCGCACACATAGCG-CTCCATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
80958714 TCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
80958743 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
80958772 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
80958800 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
80958819 TAATTCCAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 32 0.37
29 53 0.61
30 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:80958753 original size:57 final size:57
Alignment explanation
Indices: 80958686--80958818 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
80958676 CTGACTGATT
* * *
80958686 TCGCACACATAGCG-CTCCATTA-TAGAACTCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGCGCCTCAATTACCA-AACTCGCACACATAGCG-CTCAATTAAAGAAC
* * * *
80958743 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
* * *
80958800 TTGCACACACAGTGCCTCA
1 TCGCACACATAGCGCCTCA
80958819 TAATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 42 0.65
58 22 0.34
59 1 0.02
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (57 bp):
TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
Found at i:80958891 original size:40 final size:40
Alignment explanation
Indices: 80958824--80959092 Score: 384
Period size: 40 Copynumber: 6.8 Consensus size: 40
80958814 CCTCATAATT
* *
80958824 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATATCA
* * *
80958863 CTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
* *
80958903 CTAGCACGAATGCTCTTCGGGACTTAG-CCAGACATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80958942 CCAGCACGAATGCTCTTC-GGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
* * * *
80958981 CCAGTACGAATGCTCTTCAGGACTTAGCCCGGACAAAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80959021 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
80959061 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
80959093 CTATATAACT
Statistics
Matches: 212, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
38 8 0.04
39 67 0.32
40 137 0.65
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
Found at i:80959032 original size:118 final size:119
Alignment explanation
Indices: 80958824--80959092 Score: 380
Period size: 118 Copynumber: 2.3 Consensus size: 119
80958814 CCTCATAATT
** * * * *
80958824 CCAGCACGAATGC-CTTCGAGGTTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCG-GACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCAGGACTT
* * * * * *
80958888 AGCCTGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG-CCAGACATATCA
65 AGCCCGGACAAAACACCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
*
80958942 CCAGCACGAATGCTCTTCGGACTTAGCCCGGACATAACACCAGTACGAATGCTCTTCAGGACTTA
1 CCAGCACGAATGCTCTTCGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCAGGACTTA
*
80959007 GCCCGGACAAAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
66 GCCCGGACAAAACACCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
80959061 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTC-GGACTTAGCCCGG
80959093 CTATATAACT
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 88 0.66
119 33 0.25
120 13 0.10
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (119 bp):
CCAGCACGAATGCTCTTCGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCAGGACTTA
GCCCGGACAAAACACCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
Found at i:80960435 original size:37 final size:37
Alignment explanation
Indices: 80960382--80960484 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
80960372 TCGAATAGTC
*
80960382 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80960419 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
80960456 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80960485 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80960759 original size:76 final size:76
Alignment explanation
Indices: 80960668--80960816 Score: 280
Period size: 76 Copynumber: 2.0 Consensus size: 76
80960658 AGCCATTCGG
*
80960668 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80960733 ATCTCATATTA
66 ATCTCATATTA
*
80960744 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80960809 ATCTCATA
66 ATCTCATA
80960817 CATATTTCAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.36
Consensus pattern (76 bp):
CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
ATCTCATATTA
Found at i:80960797 original size:48 final size:47
Alignment explanation
Indices: 80960744--80961038 Score: 554
Period size: 47 Copynumber: 6.2 Consensus size: 47
80960734 TCTCATATTA
80960744 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACA-TAGCCATTCGG
*
80960792 CTTTACCACGTATACATATCTCATACATATTTCACACTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACA-TAGCCATTCGG
80960840 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
80960887 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
80960934 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
80960981 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACA-TAGCCATTCGG
80961029 CTTTACCACA
1 CTTTACCACA
80961039 CACATATATA
Statistics
Matches: 244, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 141 0.58
48 103 0.42
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (47 bp):
CTTTACCACATATACATATCTCATACATATTTCACATAGCCATTCGG
Found at i:80962439 original size:71 final size:70
Alignment explanation
Indices: 80962355--80962489 Score: 261
Period size: 71 Copynumber: 1.9 Consensus size: 70
80962345 AAATACCTAT
80962355 AGCATTGCACATTTCTCACATAGCAAGTACAACTAAATTCATTATTAATATATATATATATATAT
1 AGCATTGCACATTTCTCACATAGCAAGTACAACTAAATTCATTATT-ATATATATATATATATAT
80962420 ATCTAA
65 ATCTAA
80962426 AGCATTGCACATTTCTCACATAGCAAGTACAACTAAATTCATTATTATATATATATATATATAT
1 AGCATTGCACATTTCTCACATAGCAAGTACAACTAAATTCATTATTATATATATATATATATAT
80962490 CTAAACACTT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
70 18 0.28
71 46 0.72
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (70 bp):
AGCATTGCACATTTCTCACATAGCAAGTACAACTAAATTCATTATTATATATATATATATATATA
TCTAA
Found at i:80964718 original size:29 final size:29
Alignment explanation
Indices: 80964659--80964791 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
80964649 CTGACTGATT
* * *
80964659 TCGCACACATAGCG-CTCGATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
80964687 TCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
80964716 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
80964745 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
80964773 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
80964792 TAATCCAGCA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 32 0.37
29 53 0.61
30 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:80964726 original size:57 final size:57
Alignment explanation
Indices: 80964659--80964791 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
80964649 CTGACTGATT
* * *
80964659 TCGCACACATAGCG-CTCGATTA-TAGAACTCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGCGCCTCAATTACCA-AACTCGCACACATAGCG-CTCAATTAAAGAAC
* * * *
80964716 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
* * *
80964773 TTGCACACACAGTGCCTCA
1 TCGCACACATAGCGCCTCA
80964792 TAATCCAGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 42 0.65
58 22 0.34
59 1 0.02
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (57 bp):
TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
Found at i:80964863 original size:40 final size:40
Alignment explanation
Indices: 80964796--80965064 Score: 429
Period size: 40 Copynumber: 6.8 Consensus size: 40
80964786 GCCTCATAAT
* *
80964796 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATATCA
* *
80964835 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80964875 CTAGCACGAATGCTCTTCGGGACTTAGCCC-GACATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80964914 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80964954 CCAGCACGAATGCTCTTC-GGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
*
80964993 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
80965033 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
80965065 CTATATAACT
Statistics
Matches: 221, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
39 90 0.41
40 131 0.59
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCA
Found at i:80964929 original size:79 final size:80
Alignment explanation
Indices: 80964796--80965064 Score: 438
Period size: 79 Copynumber: 3.4 Consensus size: 80
80964786 GCCTCATAAT
* * *
80964796 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATATCACCAGCACGAATGCTCTTCGGGACT
* *
80964859 TAGCCCGGATATATCA
65 TAGCCCGGACATAACA
*
80964875 CTAGCACGAATGCTCTTCGGGACTTAGCCC-GACATATCACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCACCAGCACGAATGCTCTTCGGGACTT
80964939 AGCCCGGACATAACA
66 AGCCCGGACATAACA
*
80964954 CCAGCACGAATGCTCTTC-GGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCACCAGCACGAATGCTCTTCGGGACTT
80965018 AGCCCGGACATAACA
66 AGCCCGGACATAACA
80965033 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
80965065 CTATATAACT
Statistics
Matches: 178, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
78 11 0.06
79 142 0.80
80 25 0.14
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (80 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATATCACCAGCACGAATGCTCTTCGGGACTT
AGCCCGGACATAACA
Found at i:80966406 original size:37 final size:37
Alignment explanation
Indices: 80966354--80966455 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
80966344 GAATAGTCCT
*
80966354 CACACGTAGTTATCGGGTCTTACCCGGACAAAATCTC
1 CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
*
80966391 CACACGTAGTCATCGGGTCTTACCCGGACATAATCTC
1 CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
* *
80966428 CACACATAGTCATCGGGTCTTACTCGGA
1 CACACGTAGTCATCGGGTCTTACCCGGA
80966456 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
Found at i:80966720 original size:30 final size:30
Alignment explanation
Indices: 80966685--80966741 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
80966675 TTAGCCATTC
80966685 GGCTTTACCACATATACATATCTCATATAT
1 GGCTTTACCACATATACATATCTCATATAT
80966715 GGCTTTACCACATATACATATCTCATA
1 GGCTTTACCACATATACATATCTCATA
80966742 CATATTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (30 bp):
GGCTTTACCACATATACATATCTCATATAT
Found at i:80966731 original size:78 final size:78
Alignment explanation
Indices: 80966637--80966789 Score: 279
Period size: 78 Copynumber: 2.0 Consensus size: 78
80966627 CTAGCCATTC
* *
80966637 GGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
80966702 ATATCTCATATAT
66 ATATCTCATATAT
*
80966715 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATAC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
80966780 ATATCTCATA
66 ATATCTCATA
80966790 CATATTTCAC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (78 bp):
GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
ATATCTCATATAT
Found at i:80966770 original size:48 final size:48
Alignment explanation
Indices: 80966715--80967014 Score: 555
Period size: 48 Copynumber: 6.2 Consensus size: 48
80966705 TCTCATATAT
80966715 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
*
80966763 GGCTTTACCACGTATACATATCTCATACATATTTCACACTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
*
80966811 GGCTTTACCACGTATACATATCTCATACATATTTCACACTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
80966859 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
*
80966907 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
* *
80966955 AGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
80967003 GGCTTTACCACA
1 GGCTTTACCACA
80967015 CACATATATA
Statistics
Matches: 247, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 247 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
GGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
Found at i:80969415 original size:46 final size:46
Alignment explanation
Indices: 80969367--80969642 Score: 399
Period size: 46 Copynumber: 6.0 Consensus size: 46
80969357 TTTTTTTCAT
*** ** *
80969367 GTTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*** ** *
80969413 GTTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80969459 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
80969505 GCTGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
80969551 GCTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
80969597 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80969643 AGAGCACGCT
Statistics
Matches: 217, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 217 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:80973901 original size:40 final size:40
Alignment explanation
Indices: 80973831--80974012 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
80973821 TACTCGTTCG
* *
80973831 AATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACA
1 AATGCCTTCGGAACTTAGCCCGGATT-TAGTAACTCGCACA
* *
80973871 AATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACA
*
80973911 AATGCCTTCGG-GCTTAGCCCGGGA-TTAGTAACTCGCACA
1 AATGCCTTCGGAACTTAGCCC-GGATTTAGTAACTCGCACA
* * *
80973950 AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTAGCACA
1 AATGCCTTCGGAACTTAGCCCGGATTTAGTAAC-TCGCACA
*
80973991 AA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGAACTTAGCCCGG
80974013 TCATCATTCG
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.28
40 77 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACA
Found at i:80973945 original size:79 final size:82
Alignment explanation
Indices: 80973831--80974012 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 82
80973821 TACTCGTTCG
*
80973831 AATGCCTTCGGGACATAGCCC--GATTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
*
80973894 ATTTAGTAAC-TCGCACC
66 ATTTAGTAACTTAGCA-C
* **
80973911 AATGCCTTCGGG-CTTAGCCCGGGA-T-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
80973973 ATTTAGTAACTTAGCAC
66 ATTTAGTAACTTAGCAC
*
80973990 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
80974013 TCATCATTCG
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
79 63 0.68
80 27 0.29
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
AATGCCTTCGGGACTTAGCCCGGGATTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
ATTTAGTAACTTAGCAC
Found at i:80977060 original size:21 final size:21
Alignment explanation
Indices: 80977022--80977061 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80977012 GAAAACTTAC
* **
80977022 AAAGTATCGATACCTTTTTAT
1 AAAGTATCAATAAATTTTTAT
80977043 AAAGTATCAATAAATTTTT
1 AAAGTATCAATAAATTTTT
80977062 TTTGGTATCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.42
Consensus pattern (21 bp):
AAAGTATCAATAAATTTTTAT
Found at i:80988712 original size:24 final size:23
Alignment explanation
Indices: 80988681--80988726 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
80988671 GATATTGGAT
80988681 ATTGATTGTA-TTGAAATATGAAA
1 ATTGATTG-AGTTGAAATATGAAA
*
80988704 ATTGAATTGAGTTGAATTATGAA
1 ATTG-ATTGAGTTGAAATATGAA
80988727 TATATGTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (23 bp):
ATTGATTGAGTTGAAATATGAAA
Found at i:80991888 original size:24 final size:23
Alignment explanation
Indices: 80991842--80991889 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
80991832 CGTACTCCTC
*
80991842 TTTATATTTATTATTTTTAATAT
1 TTTATATTTATTATGTTTAATAT
80991865 TTTATATTTAATTATGGTTT-ATAT
1 TTTATATTT-ATTAT-GTTTAATAT
80991889 T
1 T
80991890 CACATCTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 10 0.45
25 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTATATTTATTATGTTTAATAT
Found at i:80995834 original size:50 final size:50
Alignment explanation
Indices: 80995759--80995899 Score: 171
Period size: 50 Copynumber: 2.9 Consensus size: 50
80995749 CCGTGTGTAA
* *
80995759 TGAGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* *
80995809 TGAGATCCCATATAGGACCATGTCTGGGACATGGCATTGGCATCGGTA--
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* * * * * *
80995857 TGTGATCCCATGTAAGACCATATCGGGGA-TTGGCCTTGGCATC
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
80995900 TTATTATGTG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
47 12 0.15
48 24 0.30
50 44 0.55
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (50 bp):
TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
Found at i:80999557 original size:47 final size:47
Alignment explanation
Indices: 80999235--80999522 Score: 495
Period size: 47 Copynumber: 6.1 Consensus size: 47
80999225 GATTCTATGA
* *
80999235 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
*
80999282 GATGAATGTGATCATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
* *
80999329 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
*
80999376 GATGAATGTGAACATGCAAATATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
80999423 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
* **
80999470 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
80999517 GATGAA
1 GATGAA
80999523 CGTGGAAGTG
Statistics
Matches: 228, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
Found at i:81000810 original size:32 final size:32
Alignment explanation
Indices: 81000762--81000856 Score: 111
Period size: 32 Copynumber: 2.9 Consensus size: 32
81000752 CTCAACCCAT
* *
81000762 CACAGTATCAATTGGGCCTAGCCCATCTCAAAA
1 CACA-TATCAGTTGGGCCTAGCCCATATCAAAA
* * *
81000795 TCA-ATATTAGTTGGGCTTAGCCCATATCAGAA
1 -CACATATCAGTTGGGCCTAGCCCATATCAAAA
*
81000827 CACATATCAGTTGGGCCTAGCCCATTTCAA
1 CACATATCAGTTGGGCCTAGCCCATATCAA
81000857 TTTCAAACCC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
31 2 0.04
32 46 0.90
33 1 0.02
34 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (32 bp):
CACATATCAGTTGGGCCTAGCCCATATCAAAA
Found at i:81005094 original size:55 final size:55
Alignment explanation
Indices: 81005010--81005124 Score: 221
Period size: 55 Copynumber: 2.1 Consensus size: 55
81005000 TAATGTAATT
81005010 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
1 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
*
81005065 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTATGAGA
1 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
81005120 ACACT
1 ACACT
81005125 ATCCTAGTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (55 bp):
ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
Found at i:81005293 original size:7 final size:7
Alignment explanation
Indices: 81005283--81005329 Score: 58
Period size: 7 Copynumber: 6.1 Consensus size: 7
81005273 TTTAAATTTC
81005283 ATAAAAA
1 ATAAAAA
81005290 ATAAAAA
1 ATAAAAA
81005297 ATAGAAAAATA
1 AT---AAAA-A
81005308 ATAAAAA
1 ATAAAAA
81005315 ATAAAAA
1 ATAAAAA
81005322 ATAAAAA
1 ATAAAAA
81005329 A
1 A
81005330 AATAATAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
7 25 0.69
8 4 0.11
10 4 0.11
11 3 0.08
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:81005312 original size:18 final size:17
Alignment explanation
Indices: 81005285--81005339 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 17
81005275 TAAATTTCAT
81005285 AAAA-AATAAAAAATAGA
1 AAAATAATAAAAAATA-A
81005302 AAAATAATAAAAAATAA
1 AAAATAATAAAAAATAA
81005319 AAAATAA-AAAAAATAA
1 AAAATAATAAAAAATAA
81005335 TAAAA
1 -AAAA
81005340 GGAACATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.25
17 16 0.44
18 11 0.31
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.15
Consensus pattern (17 bp):
AAAATAATAAAAAATAA
Found at i:81005314 original size:26 final size:26
Alignment explanation
Indices: 81005283--81005339 Score: 98
Period size: 25 Copynumber: 2.2 Consensus size: 26
81005273 TTTAAATTTC
*
81005283 ATAAAAAATAAAAAAT-AGAAAAATA
1 ATAAAAAATAAAAAATAAAAAAAATA
81005308 ATAAAAAATAAAAAATAAAAAAAATA
1 ATAAAAAATAAAAAATAAAAAAAATA
81005334 ATAAAA
1 ATAAAA
81005340 GGAACATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 16 0.53
26 14 0.47
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (26 bp):
ATAAAAAATAAAAAATAAAAAAAATA
Found at i:81005819 original size:15 final size:15
Alignment explanation
Indices: 81005795--81005828 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
81005785 TAAGAGTAGA
*
81005795 AGAGATGCATTTAAG
1 AGAGAAGCATTTAAG
*
81005810 AGAGAAGCATTTAAT
1 AGAGAAGCATTTAAG
81005825 AGAG
1 AGAG
81005829 CTCATCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (15 bp):
AGAGAAGCATTTAAG
Found at i:81006265 original size:24 final size:24
Alignment explanation
Indices: 81006231--81006292 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
81006221 TCACAAATTT
* * **
81006231 CACTATCACTATCATCATAGTTTG
1 CACTATTACTATCATCATAGCTCA
81006255 CACTATTACTATCATCATAGCTCA
1 CACTATTACTATCATCATAGCTCA
81006279 CACTATTACTATCA
1 CACTATTACTATCA
81006293 AATTCGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (24 bp):
CACTATTACTATCATCATAGCTCA
Found at i:81007957 original size:45 final size:43
Alignment explanation
Indices: 81007906--81008062 Score: 146
Period size: 45 Copynumber: 3.7 Consensus size: 43
81007896 TGTGTTCTCG
81007906 TGTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGGTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATC--TATATGTGGTTACA
* * * **
81007951 TGTAAGACCATGTCTGGGACATTGGCATCGTAT-T-TGATT-TG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-TATATGTGGTTACA
* * *
81007992 TGTAAGACC-CTGTCTGGGGCAG-TGGCATCGATATGT-GATAGCA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCTATATGTGGTTA-CA
81008035 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
81008063 TGTATGATAT
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
40 2 0.02
41 26 0.29
42 6 0.07
43 24 0.27
44 4 0.04
45 27 0.30
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCTATATGTGGTTACA
Found at i:81008008 original size:41 final size:41
Alignment explanation
Indices: 81007906--81008068 Score: 125
Period size: 41 Copynumber: 3.8 Consensus size: 41
81007896 TGTGTTCTCG
* * * *
81007906 TGTAAGACCAC-GTCTGGGACGTTGGCATCAATATATGTGGTTACA
1 TGTAAGACC-CTGTCTGGGACATTGGCATC---GTATGT-GATAGA
* * *
81007951 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTG-
1 TGTAAGACCCTGTCTGGGACATTGGCATCGTATGTGA-TAGA
* *
81007992 TGTAAGACCCTGTCTGGGGCAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCCTGTCTGGGACATTGGCATCG-TATGTGATAG-A
* *
81008035 TGTAAGACCAC-GTCTGGGACGTTGGCATTGTATG
1 TGTAAGACC-CTGTCTGGGACATTGGCATCGTATG
81008069 ATATGTGTGA
Statistics
Matches: 96, Mismatches: 16, Indels: 15
0.76 0.13 0.12
Matches are distributed among these distances:
41 30 0.31
42 15 0.16
43 24 0.25
44 1 0.01
45 26 0.27
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (41 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCGTATGTGATAGA
Found at i:81013038 original size:20 final size:20
Alignment explanation
Indices: 81013015--81013120 Score: 88
Period size: 20 Copynumber: 5.3 Consensus size: 20
81013005 CACTTATGTG
81013015 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
** * *
81013035 CCCCTAATTGCACTTAT-GTG
1 CCCCTGTTTGTACTT-TGGTA
81013055 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * ** *
81013075 CCCTTGATTGCACTTACGTG
1 CCCCTGTTTGTACTTTGGTA
* *
81013095 CCCTTTTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
81013115 CCCCTG
1 CCCCTG
81013121 ATTGCACTTA
Statistics
Matches: 62, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
19 1 0.02
20 60 0.97
21 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:81013056 original size:40 final size:40
Alignment explanation
Indices: 81012999--81013234 Score: 285
Period size: 40 Copynumber: 5.9 Consensus size: 40
81012989 AATTATTGAA
* *
81012999 TGATTGCACTTATGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
81013039 TAATTGCACTTATGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* *
81013079 TGATTGCACTTACGTGCCCTTTTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
81013119 TGATTGCACTTACGTGTCCCTATTTGTACTTCGGCACTCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * *
81013159 TGATTGCACTTATGTGCCCATATTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
81013199 T-AGTTGCACTTCCGTGCCCCTAGTTATACTTCGGTA
1 TGA-TTGCACTTACGTGCCCCTATTTGTACTTTGGTA
81013235 ACTCTACATC
Statistics
Matches: 172, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.01
40 171 0.99
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
Found at i:81013218 original size:20 final size:20
Alignment explanation
Indices: 81013162--81013223 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
81013152 GCACTCCTGA
** * *
81013162 TTGCACTTATGTGCCCATAT
1 TTGCACTTCCGTGCCCCTAG
* * *
81013182 TTGTACTTCGGTACCCCTAG
1 TTGCACTTCCGTGCCCCTAG
81013202 TTGCACTTCCGTGCCCCTAG
1 TTGCACTTCCGTGCCCCTAG
81013222 TT
1 TT
81013224 ATACTTCGGT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (20 bp):
TTGCACTTCCGTGCCCCTAG
Found at i:81013229 original size:20 final size:20
Alignment explanation
Indices: 81013185--81013230 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
81013175 CCCATATTTG
* *
81013185 TACTTCGGTACCCCTAGTTG
1 TACTTCCGTACCCCTAGTTA
* *
81013205 CACTTCCGTGCCCCTAGTTA
1 TACTTCCGTACCCCTAGTTA
81013225 TACTTC
1 TACTTC
81013231 GGTAACTCTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (20 bp):
TACTTCCGTACCCCTAGTTA
Found at i:81013655 original size:17 final size:17
Alignment explanation
Indices: 81013635--81013667 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81013625 TATATTATGG
81013635 ATGATCTTATATGTAAC
1 ATGATCTTATATGTAAC
*
81013652 ATGATGTTATATGTAA
1 ATGATCTTATATGTAA
81013668 AAAGAGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (17 bp):
ATGATCTTATATGTAAC
Found at i:81019981 original size:39 final size:39
Alignment explanation
Indices: 81019932--81020099 Score: 155
Period size: 39 Copynumber: 4.3 Consensus size: 39
81019922 TAAACCCGGT
* * *
81019932 ATAATACCAGCTCGAAGCCTGTGGGA-CTTTAGCCCGGAC
1 ATAATTCCAGCACGAAGCCTGT-GGACCTTAAGCCCGGAC
* * * *
81019971 ATATTTCCAGCACGTAGCCTGTGGACCTTAAGTCCGGAT
1 ATAATTCCAGCACGAAGCCTGTGGACCTTAAGCCCGGAC
* * * *
81020010 ATAATTCCAGCAC-ATAGCCTGCGGACCCTAAGTCC-GAT
1 ATAATTCCAGCACGA-AGCCTGTGGACCTTAAGCCCGGAC
* * *
81020048 ATAATTCCAGCAC-ATAGCCTGTGGACCCTAAGTCCGGAT
1 ATAATTCCAGCACGA-AGCCTGTGGACCTTAAGCCCGGAC
81020087 ATAATTCCAGCAC
1 ATAATTCCAGCAC
81020100 ATAACCTGCG
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
38 40 0.35
39 74 0.65
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
ATAATTCCAGCACGAAGCCTGTGGACCTTAAGCCCGGAC
Found at i:81020069 original size:77 final size:77
Alignment explanation
Indices: 81019975--81020122 Score: 269
Period size: 77 Copynumber: 1.9 Consensus size: 77
81019965 CCGGACATAT
* * *
81019975 TTCCAGCACGTAGCCTGTGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTA
1 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCGGACCCTA
81020040 AGTCCGATATAA
66 AGTCCGATATAA
81020052 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCGGACCCTA
1 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCGGACCCTA
81020117 AGTCCG
66 AGTCCG
81020123 GATACACATC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (77 bp):
TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCGGACCCTA
AGTCCGATATAA
Found at i:81020100 original size:39 final size:39
Alignment explanation
Indices: 81019965--81020126 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
81019955 GGACTTTAGC
* * * * *
81019965 CCGGACATATTTCCAGCACGTAGCCTGTGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81020004 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
81020043 CC-GATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
81020081 CCGGATATAATTCCAGCACATAACCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81020120 CCGGATA
1 CCGGATA
81020127 CACATCAAAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 37 0.32
39 77 0.68
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:81022542 original size:18 final size:18
Alignment explanation
Indices: 81022519--81022560 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
81022509 TAAAATTACC
81022519 TATCACCTTCCACAATTA
1 TATCACCTTCCACAATTA
81022537 TATCACCTTCCACAATTA
1 TATCACCTTCCACAATTA
*
81022555 TTTCAC
1 TATCAC
81022561 ATAAGTCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (18 bp):
TATCACCTTCCACAATTA
Found at i:81027253 original size:38 final size:39
Alignment explanation
Indices: 81027150--81027311 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
81027140 GGACTTTAGC
* * * *
81027150 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81027189 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
81027228 CCTGATATAATT-CAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81027266 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
81027305 CTGGATA
1 CCGGATA
81027312 CACATCAAAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
38 37 0.32
39 78 0.68
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:81027257 original size:77 final size:77
Alignment explanation
Indices: 81027163--81027305 Score: 268
Period size: 77 Copynumber: 1.9 Consensus size: 77
81027153 GACATATTTC
* *
81027163 CAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81027228 CCTGATATAATT
66 CCTGATATAATT
81027240 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81027305 C
66 C
81027306 TGGATACACA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (77 bp):
CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
CCTGATATAATT
Found at i:81029098 original size:2 final size:2
Alignment explanation
Indices: 81029091--81029133 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
81029081 GAATACTCAT
81029091 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
81029133 A
1 A
81029134 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:81032991 original size:39 final size:39
Alignment explanation
Indices: 81032902--81033064 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
81032892 TATGGTAACC
* *
81032902 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
81032942 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
81032981 TGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
81033020 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
81033059 CGCACA
1 CGCACA
81033065 TTCATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:81040595 original size:39 final size:39
Alignment explanation
Indices: 81040433--81040595 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
81040423 TATGGTAACC
* *
81040433 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
81040473 CGCACAGTTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
81040512 TGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
81040551 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
81040590 CGCACA
1 CGCACA
81040596 TTCATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:81045255 original size:42 final size:40
Alignment explanation
Indices: 81045095--81045255 Score: 117
Period size: 42 Copynumber: 3.9 Consensus size: 40
81045085 TAAGTTTATG
* * **
81045095 TGTAAGACCATATCTGGGATATGACATCGTTATGAGATTT
1 TGTAAGACCATATCTGGGATATGACATTGATATGAGATCA
* * * * * **
81045135 TGAGTAGGACCATGTTTGGGACATGGCATTGATATGAGAATTG
1 T--GTAAGACCATATCTGGGATATGACATTGATATGAG-ATCA
* * *
81045178 TGTAAGACCATAGCTGGGCTATTGGCA-TGAATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGACATTG-ATATGAGAT--CA
*
81045221 TGTAAGACCATATCTGGGATATGACATTGGTATGA
1 TGTAAGACCATATCTGGGATATGACATTGATATGA
81045256 TTCTATGTGT
Statistics
Matches: 93, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.01
41 18 0.19
42 49 0.53
43 25 0.27
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (40 bp):
TGTAAGACCATATCTGGGATATGACATTGATATGAGATCA
Found at i:81048253 original size:17 final size:17
Alignment explanation
Indices: 81048212--81048269 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
81048202 ATTAAATTTC
*
81048212 ATAA-AAATTCAAA-AA
1 ATAATAAATACAAATAA
*
81048227 ATAGAAAAATAACAAA-AA
1 ATA-ATAAAT-ACAAATAA
*
81048245 GTAATAAATACAAATAA
1 ATAATAAATACAAATAA
81048262 ATAATAAA
1 ATAATAAA
81048270 ATGAACATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 3 0.09
16 6 0.17
17 18 0.51
18 8 0.23
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.19
Consensus pattern (17 bp):
ATAATAAATACAAATAA
Found at i:81049606 original size:31 final size:31
Alignment explanation
Indices: 81049568--81049630 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
81049558 TATGTATGTG
81049568 TATGTACACTTTACTATGTTTAAAGAAATTC
1 TATGTACACTTTACTATGTTTAAAGAAATTC
81049599 TATGTACACTTTACTATGTTTAAAGAAATTC
1 TATGTACACTTTACTATGTTTAAAGAAATTC
81049630 T
1 T
81049631 CTCATATCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.43
Consensus pattern (31 bp):
TATGTACACTTTACTATGTTTAAAGAAATTC
Found at i:81049757 original size:17 final size:18
Alignment explanation
Indices: 81049735--81049788 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
81049725 CAAATAAATT
81049735 GAAAAAATAAAAAATAA-
1 GAAAAAATAAAAAATAAG
*
81049752 GAAAAATTAAAAAATAAAG
1 GAAAAAATAAAAAAT-AAG
*
81049771 GAAAAAAATTAAAAATAA
1 G-AAAAAATAAAAAATAA
81049789 TAACTAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 14 0.45
18 2 0.06
19 3 0.10
20 12 0.39
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
GAAAAAATAAAAAATAAG
Found at i:81050274 original size:17 final size:17
Alignment explanation
Indices: 81050232--81050280 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
81050222 TAAAACTCTT
81050232 AAATAACTTAAAATATTA
1 AAATAA-TTAAAATATTA
81050250 ATAATAATTAAAA-ATTCA
1 A-AATAATTAAAATATT-A
81050268 AAATAA-TAAAATA
1 AAATAATTAAAATA
81050281 ATAAGATCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.18
17 9 0.32
18 9 0.32
19 5 0.18
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAATTAAAATATTA
Found at i:81052720 original size:27 final size:28
Alignment explanation
Indices: 81052663--81052732 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81052653 AAATTTGTAC
**
81052663 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
81052691 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
81052718 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81052733 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:81052741 original size:27 final size:27
Alignment explanation
Indices: 81052663--81052744 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
81052653 AAATTTGTAC
* *
81052663 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
81052691 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
81052718 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
81052745 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:81059681 original size:5 final size:5
Alignment explanation
Indices: 81059671--81059698 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
81059661 GATACCAACC
81059671 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
81059699 CATTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:81060393 original size:18 final size:16
Alignment explanation
Indices: 81060370--81060409 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
81060360 GAATCCTTGT
81060370 TAAAATAAAATACAATGG
1 TAAAATAAAATA-AAT-G
81060388 TAAAATAAAATAAATG
1 TAAAATAAAATAAATG
81060404 TAAAAT
1 TAAAAT
81060410 CCATATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 3 0.14
18 12 0.55
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (16 bp):
TAAAATAAAATAAATG
Found at i:81063540 original size:28 final size:27
Alignment explanation
Indices: 81063490--81063603 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
81063480 CTATTCAAAA
*
81063490 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
81063517 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
81063544 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
81063578 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
81063604 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:81063545 original size:62 final size:60
Alignment explanation
Indices: 81063467--81063611 Score: 177
Period size: 61 Copynumber: 2.4 Consensus size: 60
81063457 TCAAGCTTTC
* * *
81063467 CTGGGCCTAAGCCCTATT-CAAAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTAC-AAAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* *
81063529 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
81063590 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
81063612 GTCGAGATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 39 0.53
62 32 0.43
63 3 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:81063675 original size:19 final size:20
Alignment explanation
Indices: 81063632--81063687 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
81063622 ATTGGGTCTT
81063632 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
81063652 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
81063671 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
81063688 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:81065864 original size:17 final size:19
Alignment explanation
Indices: 81065822--81065865 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81065812 ATGAAATTTT
*
81065822 AATTAGTATTATGAGACAA
1 AATTATTATTATGAGACAA
*
81065841 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGACAA
81065859 AA-TATTA
1 AATTATTA
81065866 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATGAGACAA
Found at i:81067734 original size:27 final size:28
Alignment explanation
Indices: 81067660--81067725 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
81067650 GTAGATCACG
*
81067660 AATTACCCCTAAAGAGCAAAATTACCGA
1 AATTACCCCTAAAGAGTAAAATTACCGA
81067688 AATTACCCCTAAAGAGTAAAATTACCGA
1 AATTACCCCTAAAGAGTAAAATTACCGA
*
81067716 TA-TACCCCTA
1 AATTACCCCTA
81067726 GGGTTTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (28 bp):
AATTACCCCTAAAGAGTAAAATTACCGA
Found at i:81074329 original size:28 final size:28
Alignment explanation
Indices: 81074277--81074366 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 28
81074267 TTGTGACAGT
* *
81074277 CACCAGATACAGAT-GTTGTGGCAGAGC
1 CACCAGAAACAGATACTTGTGGCAGAGC
*
81074304 CATCAGAAACAGATACTTGTGGCAGAGC
1 CACCAGAAACAGATACTTGTGGCAGAGC
* * *
81074332 CACCAG-ATCAGATATTTGTGACAGAGC
1 CACCAGAAACAGATACTTGTGGCAGAGC
81074359 CACCAGAA
1 CACCAGAA
81074367 CGCTTCCTCC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 36 0.67
28 18 0.33
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CACCAGAAACAGATACTTGTGGCAGAGC
Found at i:81074802 original size:16 final size:15
Alignment explanation
Indices: 81074781--81074812 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
81074771 ACAAAATGCC
81074781 GGCTTTTCGGCATTTT
1 GGCTTTTCGGC-TTTT
81074797 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCTTTT
81074812 G
1 G
81074813 CCGATCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.03, C:0.19, G:0.28, T:0.50
Consensus pattern (15 bp):
GGCTTTTCGGCTTTT
Found at i:81077882 original size:13 final size:13
Alignment explanation
Indices: 81077864--81077889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81077854 TTGAACCCAT
81077864 ACCAAAACAATCA
1 ACCAAAACAATCA
81077877 ACCAAAACAATCA
1 ACCAAAACAATCA
81077890 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:81084497 original size:59 final size:58
Alignment explanation
Indices: 81084425--81084535 Score: 150
Period size: 59 Copynumber: 1.9 Consensus size: 58
81084415 ATAAGGTGAT
* * *
81084425 TTGGGCCTAATGGGCCATAAAAAGGTTATTTGGGCCTAATGGGCCATATAAATATAAAA
1 TTGGGCCTAATGGGCCATAAAAAGGTGAATCGGGCC-AATGGGCCATATAAATATAAAA
* ** *
81084484 TTGGGCCTGATGGGCCATATGAATGTGAATCGGGCCAATGGGCCATATAAAT
1 TTGGGCCTAATGGGCCATAAAAAGGTGAATCGGGCCAATGGGCCATATAAAT
81084536 GAGATTGGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 16 0.36
59 29 0.64
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (58 bp):
TTGGGCCTAATGGGCCATAAAAAGGTGAATCGGGCCAATGGGCCATATAAATATAAAA
Found at i:81084531 original size:28 final size:29
Alignment explanation
Indices: 81084420--81084559 Score: 142
Period size: 29 Copynumber: 4.9 Consensus size: 29
81084410 TGAATATAAG
* * *
81084420 GTGATTTGGGCCTAATGGGCCATAAAAAG
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* *
81084449 GTTATTTGGGCCTAATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
81084478 ATAAAATTGGGCCTGATGGGCCATATGAAT
1 GT-GAATTGGGCCTAATGGGCCATATAAAT
*
81084508 GTGAATCGGGCC-AATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
81084536 GAG-ATTGGGCC-AAGTGGGCCATAT
1 GTGAATTGGGCCTAA-TGGGCCATAT
81084560 GCATGTATGT
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
27 9 0.10
28 26 0.28
29 35 0.37
30 24 0.26
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:81084557 original size:56 final size:59
Alignment explanation
Indices: 81084456--81084565 Score: 147
Period size: 56 Copynumber: 1.9 Consensus size: 59
81084446 AAGGTTATTT
*
81084456 GGGCCTAATGGGCCATATAAATATAAAATTGGGCCTGATGGGCCATATGAATGTGAATC
1 GGGCCTAATGGGCCATATAAATATAAAATTGGGCCAGATGGGCCATATGAATGTGAATC
* * *
81084515 GGGCC-AATGGGCCATAT-AA-ATGAGATTGGGCCA-AGTGGGCCATATGCATGT
1 GGGCCTAATGGGCCATATAAATATAAAATTGGGCCAGA-TGGGCCATATGAATGT
81084566 ATGTAGGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 1 0.02
56 26 0.57
57 2 0.04
58 12 0.26
59 5 0.11
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (59 bp):
GGGCCTAATGGGCCATATAAATATAAAATTGGGCCAGATGGGCCATATGAATGTGAATC
Found at i:81086593 original size:46 final size:47
Alignment explanation
Indices: 81086383--81086694 Score: 247
Period size: 46 Copynumber: 6.7 Consensus size: 47
81086373 ATTTGGGCAT
* * *
81086383 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAA-TGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
* * *
81086429 CC-AAGCT-GATTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTATGC
1 CCGAA-CTCG-TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC--TGC
* *
81086474 AACCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
* * *
81086522 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAA-TGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
** * *
81086568 CCGAACTCGTTGAGTTGAGTTTGAGTTC-GTGA--GATGT-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACT--GC
* *
81086613 ATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTGTGGATGTGAACT-C
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
* * * *
81086661 CCGAGCTTGTTGAGTTGAGTCGGAGTTCGCTTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
81086695 AGGCAGGTTA
Statistics
Matches: 211, Mismatches: 32, Indels: 46
0.73 0.11 0.16
Matches are distributed among these distances:
42 4 0.02
43 9 0.04
45 9 0.04
46 117 0.55
47 48 0.23
48 9 0.04
50 8 0.04
51 7 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTGC
Found at i:81086633 original size:139 final size:139
Alignment explanation
Indices: 81086383--81086694 Score: 457
Period size: 139 Copynumber: 2.2 Consensus size: 139
81086373 ATTTGGGCAT
81086383 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAATGTCCAAGCTGATTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAATGTCCAAGCTGATTGAGTTGAG
* *
81086448 TCCGAGTTCGTGAAATGTAACTATGCAACCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTGAAATGTAACTAGGCAACCAAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGA
81086513 TGCGAACGC
131 TGCGAACGC
* *
81086522 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATGTCCGAA-CTCG-TTGAGTTG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAATGTCC-AAGCT-GATTGAGTTG
** * * * *
81086585 AGTTTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTGTG
64 AGTCCGAGTTCGTGAAATGTAACTAGGCAACCAAACTCGCTGAGTTGAGTCCGAGTTCACTTATG
* *
81086650 GATGTGAACTC
129 GATGCGAACGC
* * *
81086661 CCGAGCTTGTTGAGTTGAGTCGGAGTTCGCTTAT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
81086695 AGGCAGGTTA
Statistics
Matches: 156, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
139 153 0.98
140 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAATGTCCAAGCTGATTGAGTTGAG
TCCGAGTTCGTGAAATGTAACTAGGCAACCAAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGA
TGCGAACGC
Found at i:81090683 original size:55 final size:54
Alignment explanation
Indices: 81090554--81090742 Score: 204
Period size: 55 Copynumber: 3.5 Consensus size: 54
81090544 AACTTACCAT
* * *
81090554 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * * *
81090607 AGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTGACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * * *
81090662 TGCCATGTCTTGACATCGTCTTACATGATTTCCTTT-CCTTATACAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
81090716 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
81090743 ATATCCTTAT
Statistics
Matches: 112, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 33 0.29
55 38 0.34
56 5 0.04
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:81092182 original size:93 final size:93
Alignment explanation
Indices: 81092074--81092244 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81092064 GCCCCTAAGT
* ** * *
81092074 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81092139 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
81092167 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81092232 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81092245 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81092233 original size:46 final size:45
Alignment explanation
Indices: 81092071--81092239 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 45
81092061 CCCGCCCCTA
* * ** *
81092071 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT
* * *
81092116 AAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCATCCAT
*
81092164 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT
81092209 AGGTGAACTCGGACTCAACTCAACGAGTTCG
1 A-GTGAACTCGGACTCAACTCAACGAGTTCG
81092240 GATGCTCAAC
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 55 0.55
47 26 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT
Found at i:81093735 original size:54 final size:54
Alignment explanation
Indices: 81093563--81093743 Score: 238
Period size: 55 Copynumber: 3.4 Consensus size: 54
81093553 ATGTTCCAAA
* * * *
81093563 CATGGTCTTACATGGTATCCTTGTCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** * * * *
81093616 CATGGTCTTACATGGGACCTTTGCCTTATAGTAACCCATCAATGCCATGTCTTGA
1 CATGGTCTTACATGATATCTTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
81093671 CATGGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
81093725 CATGGTCTTACATGATATC
1 CATGGTCTTACATGATATC
81093744 CTTATCTTAC
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
53 25 0.23
54 38 0.35
55 46 0.42
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGATATCTTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:81100873 original size:29 final size:29
Alignment explanation
Indices: 81100841--81100913 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
81100831 CTTCGAGCTC
*
81100841 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
81100870 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
81100899 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
81100914 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:81102232 original size:25 final size:23
Alignment explanation
Indices: 81102197--81102244 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
81102187 ATCCACACTC
81102197 TTTTTTTTTTCATCATTTTCCTT
1 TTTTTTTTTTCATCATTTTCCTT
* *
81102220 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
81102245 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTTTCATCATTTTCCTT
Found at i:81114103 original size:79 final size:80
Alignment explanation
Indices: 81113960--81114167 Score: 181
Period size: 79 Copynumber: 2.6 Consensus size: 80
81113950 ACCTTCGGAG
* * ** * * * *
81113960 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
81114024 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * * *
81114039 CTTAACCTGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
81114101 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
81114118 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
81114168 TTATAATTTC
Statistics
Matches: 102, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
78 2 0.02
79 64 0.63
80 35 0.34
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:81114109 original size:40 final size:40
Alignment explanation
Indices: 81114060--81114167 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
81114050 TATCACGATT
** *
81114060 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
81114100 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
81114140 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
81114168 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:81127231 original size:20 final size:20
Alignment explanation
Indices: 81127215--81127274 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 20
81127205 TACAAAATAA
81127215 TCAAAATAATTGTAAAAAAT
1 TCAAAATAATTGTAAAAAAT
* **
81127235 TCAAATTAATT-TTTAAAAT
1 TCAAAATAATTGTAAAAAAT
*
81127254 TTAAAAT-ATT-TATAAAAAT
1 TCAAAATAATTGTA-AAAAAT
81127273 TC
1 TC
81127275 CCAAAATATT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
18 4 0.13
19 17 0.55
20 10 0.32
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
TCAAAATAATTGTAAAAAAT
Found at i:81130124 original size:40 final size:40
Alignment explanation
Indices: 81130078--81130245 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
81130068 CGGAATATAA
81130078 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81130118 ACGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
81130158 CCGGATATAGCCACTAGCACAATTGCCTACGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81130198 CCGGATATAATTTCCAGCATAATTGCCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81130238 CCGGATAT
1 CCGGATAT
81130246 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81133022 original size:22 final size:22
Alignment explanation
Indices: 81132994--81133038 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
81132984 ATGGTTGTCT
81132994 TGTTGGATAAAAAATAACTCAC
1 TGTTGGATAAAAAATAACTCAC
81133016 TGTTGGATAAAAAATAACTCAC
1 TGTTGGATAAAAAATAACTCAC
81133038 T
1 T
81133039 AATATCTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (22 bp):
TGTTGGATAAAAAATAACTCAC
Found at i:81134079 original size:2 final size:2
Alignment explanation
Indices: 81134066--81134097 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
81134056 AGGAGGGGGA
*
81134066 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
81134098 TCCATTAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:81137122 original size:42 final size:42
Alignment explanation
Indices: 81137009--81137123 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
81136999 AGAAAGCTCG
* * *
81137009 TACAATGCCAACGTCCCAGCTGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGATGTGGTCTTACATGAAATCAAA
* * * **
81137051 TATCGACGCCAGTGTCCCAGACATGGTCTTACATGAAATCAAA
1 TA-CAATGCCAATGTCCCAGATGTGGTCTTACATGAAATCAAA
*
81137094 TACAATGCCAATGTCCCAAATGTGGTCTTA
1 TACAATGCCAATGTCCCAGATGTGGTCTTA
81137124 TACATAAAAC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGATGTGGTCTTACATGAAATCAAA
Found at i:81157861 original size:27 final size:27
Alignment explanation
Indices: 81157827--81157892 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
81157817 AGGGCAAAAT
* *
81157827 AGTCATTTTACCCTACAGGGGTATGTC
1 AGTCATTTTACACTACAAGGGTATGTC
*
81157854 AGTCATTTTACACTACAAGGGTATTTC
1 AGTCATTTTACACTACAAGGGTATGTC
* *
81157881 AATAATTTTACA
1 AGTCATTTTACA
81157893 AATCGGAGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACACTACAAGGGTATGTC
Found at i:81157907 original size:27 final size:27
Alignment explanation
Indices: 81157845--81158293 Score: 398
Period size: 27 Copynumber: 16.6 Consensus size: 27
81157835 TACCCTACAG
* * * *
81157845 GGGTATGTCAGTCATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
*
81157872 GGGTATTTCAATAATTTTACAAATCG-
1 GGGTATTTCAGTAATTTTACAAATCGA
*
81157898 GAGGTGTTTCAGTAATTTTACAAATCGA
1 G-GGTATTTCAGTAATTTTACAAATCGA
*
81157926 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
81157953 GGGTATTTTGGTAATTTTACGAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
81157980 GGGTATTTTGGTAATTTTAAAAAT-TA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
81158006 GGGGTATTTCAATAATTTTA-AAAACTGA
1 -GGGTATTTCAGTAATTTTACAAATC-GA
* *
81158034 GGGTTTTTCTA-TAATTTTATAAA-CTGA
1 GGGTATTTC-AGTAATTTTACAAATC-GA
* * *
81158061 GGGTATTTCAATAATTTTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
81158088 GGGTATTT-AGGTAATTTTACGAATCGA
1 GGGTATTTCA-GTAATTTTACAAATCGA
* *
81158115 GGATATTTC-GATAATTTTACAAATCGG
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
81158142 GGGTACTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
81158169 GGGTATTT-TGATAATTTTACAAATCAA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* * *
81158196 GGGTATTTTAGTAATTTTACAAACCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
81158223 GGGTACTTCAGTAATTTTCCAAACCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
81158250 GGGTATTTCAGTAATTTTACAAA-CTGG
1 GGGTATTTCAGTAATTTTACAAATC-GA
81158277 GGGTATTTC-GATAATTT
1 GGGTATTTCAG-TAATTT
81158294 CTCTTTATTC
Statistics
Matches: 355, Mismatches: 49, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
26 11 0.03
27 333 0.94
28 11 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Done.