Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 265 of 425
Found at i:81466933 original size:14 final size:14
Alignment explanation
Indices: 81466914--81466942 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81466904 GATGATATGG
81466914 TATTTTTGAAAGTA
1 TATTTTTGAAAGTA
81466928 TATTTTTGAAAGTA
1 TATTTTTGAAAGTA
81466942 T
1 T
81466943 CTCCTTGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TATTTTTGAAAGTA
Found at i:81470609 original size:55 final size:53
Alignment explanation
Indices: 81470522--81470755 Score: 210
Period size: 55 Copynumber: 4.4 Consensus size: 53
81470512 ATTAAGGTTT
*
81470522 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * *
81470577 AAGGATACCATGTAAGACCATGTCAAGACATGGTATTGATAAGTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGG-C
* * * * *
81470633 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGTTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* * * * * *
81470685 AATGATACCATGTAAAACCATGTCGAGACATAGAAATGGTAAGTTTC--A-G-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
*
81470734 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
81470756 AAAAGTCATA
Statistics
Matches: 145, Mismatches: 28, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
49 19 0.13
50 1 0.01
51 1 0.01
52 4 0.03
53 36 0.25
54 11 0.08
55 69 0.48
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:81470728 original size:108 final size:110
Alignment explanation
Indices: 81470529--81470729 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
81470519 TTTAAGGATA
*
81470529 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAAA
* * *
81470594 CCATGTCAAGACATGGTATTGATAAGTTACTATAAGGTAAAGGTC
66 CCATGTCAAGACATAGAAATGATAAGTTACTATAAGGTAAAGGTC
* * * *
81470639 CCATGTAAGACCATGCCAAGGCATGG-CATTGTTGA-G-TTCATAAGGCAATGATACCATGTAAA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAA
* *
81470701 ACCATGTCGAGACATAGAAATGGTAAGTT
65 ACCATGTCAAGACATAGAAATGATAAGTT
81470730 TCAGAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 6 0.08
110 26 0.32
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAAA
CCATGTCAAGACATAGAAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:81473244 original size:40 final size:40
Alignment explanation
Indices: 81473197--81473306 Score: 129
Period size: 39 Copynumber: 2.8 Consensus size: 40
81473187 CTGGAAATTA
* *
81473197 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
81473238 -ATCCGGGCTAAGACCC-AAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
81473276 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
81473307 ACGTGGTTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
37 1 0.02
38 5 0.08
39 28 0.47
40 24 0.40
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:81473320 original size:40 final size:40
Alignment explanation
Indices: 81473194--81473322 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
81473184 ATGCTGGAAA
* * *
81473194 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
81473234 CTACATCCGGGCTAAGACCC-AAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
81473273 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
81473313 TTATATCCGG
1 TTATATCCGG
81473323 TTATATTCCG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 32 0.44
40 40 0.56
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:81481211 original size:40 final size:40
Alignment explanation
Indices: 81481126--81481276 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
81481116 AATTGAATGA
* * * **
81481126 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
81481166 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
81481207 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
81481246 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
81481277 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:81481290 original size:40 final size:40
Alignment explanation
Indices: 81481163--81481292 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
81481153 ATGCTGGAAA
* * *
81481163 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
81481203 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
81481243 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
81481283 TTATATCCGG
1 TTATATCCGG
81481293 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:81487608 original size:55 final size:54
Alignment explanation
Indices: 81487532--81487775 Score: 234
Period size: 55 Copynumber: 4.6 Consensus size: 54
81487522 ATTAGGGTTT
* *
81487532 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTTTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTATAAGGC
* * *
81487587 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TATAAGGC
* * * *** * *
81487642 AA-AATTCCCATGTAAGACCATGCCAAGGCACAAC-ATTGGTGAGTTCATAAGGC
1 AAGGA-TACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
* *
81487695 AAGGATACCATGTAAGACCATGCCGAGACATGGCAA-TGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
* * *
81487744 AAGGATACCACGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
81487776 AAAATGGTAA
Statistics
Matches: 154, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 28 0.18
52 2 0.01
53 42 0.27
54 10 0.06
55 72 0.47
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
Found at i:81487738 original size:108 final size:110
Alignment explanation
Indices: 81487539--81487739 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
81487529 TTTAAGGATA
*** **
81487539 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTTTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCACAACAATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAGA
* *
81487604 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGTAAAATTC
66 CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGTAAAATTC
*
81487649 CCATGTAAGACCATGCCAAGGCACAAC-ATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCACAACAATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAGA
* *
81487712 CCATGCCGAGACATGGCAATGGTAAGTT
66 CCATGCCAAGACATGGCAATGATAAGTT
81487740 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 50 0.62
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCACAACAATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAGA
CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGTAAAATTC
Found at i:81499408 original size:27 final size:27
Alignment explanation
Indices: 81499378--81499577 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
81499368 TGGATAAGTT
*
81499378 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
81499405 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
81499432 GTAGAATTACCGAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
81499459 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
81499486 GTAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
81499513 GTAGAAATATCGAAATACCCCCGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
81499540 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
81499567 GTAAAATTACC
1 GTAGAATTACC
81499578 ATTTTGCCCC
Statistics
Matches: 151, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:81506309 original size:40 final size:40
Alignment explanation
Indices: 81506230--81506406 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
81506220 CGGATGATAA
* * *
81506230 CCGGACTAAGATCCGAAGGCATTCATGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
81506270 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
81506310 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * *
81506350 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
81506390 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81506407 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:81506368 original size:80 final size:80
Alignment explanation
Indices: 81506230--81506406 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
81506220 CGGATGATAA
* * * *
81506230 CCGGACTAAGATCCGAAGGCATTCATGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
81506295 TGCTAG-TGATTATAT
66 TGCAAGTTG-TTATAT
** * *
81506310 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATTTCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
81506375 TGCAAGTTGTTATAT
66 TGCAAGTTGTTATAT
81506390 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81506407 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 70 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTTGTTATAT
Found at i:81508516 original size:56 final size:55
Alignment explanation
Indices: 81508455--81508645 Score: 258
Period size: 56 Copynumber: 3.4 Consensus size: 55
81508445 CCGTGGCATC
* * * *
81508455 GATATATATGTGCAAGTCAGGCCACGTTTAATATGTTGGCATCGATATGTGATTCT
1 GATATATGTGTG-AAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
* * *
81508511 GATATATGTGTGTGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCT
1 GATATATGTGTG-AAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
81508567 GATATATGTGTGAGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT-T
1 GATATATGTGTGA-AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
*
81508622 CGATATATGTATGAGAGTAAGACC
1 -GATATATGTGTGA-AGTAAGACC
81508646 CTGTCTAGGA
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
55 1 0.01
56 120 0.99
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.34
Consensus pattern (55 bp):
GATATATGTGTGAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
Found at i:81508663 original size:56 final size:56
Alignment explanation
Indices: 81508491--81508675 Score: 236
Period size: 56 Copynumber: 3.3 Consensus size: 56
81508481 TTTAATATGT
* *
81508491 TGGCATCGATATGTGATTCTGATATATGTGTGTGAGTAAGACCACAT-TTAATACAT
1 TGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCAC-TGTTAATACAG
81508547 TGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCAC-GTTTAATAC-G
1 TGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCACTG-TTAATACAG
* **
81508602 TTGGCATCGATATGTGATT-TCGATATATGTATGAGAGTAAGACC-CTGTCTAGGACAG
1 -TGGCATCGATATGTGATTCT-GATATATGTGTGAGAGTAAGACCACTGT-TAATACAG
*
81508659 TGGCACCGATATGTGAT
1 TGGCATCGATATGTGAT
81508676 AACATGTATG
Statistics
Matches: 116, Mismatches: 6, Indels: 14
0.85 0.04 0.10
Matches are distributed among these distances:
55 3 0.03
56 112 0.97
57 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCACTGTTAATACAG
Found at i:81512170 original size:36 final size:36
Alignment explanation
Indices: 81512130--81512200 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
81512120 AACAATTATT
* * *
81512130 TATTCAGTAATAGTCAGTTATTCAGTA-ACAATCAAA
1 TATTCAATAATAATCAGTTATCCAGTATA-AATCAAA
*
81512166 TATTCAATAATAATTAGTTATCCAGTATAAATCAA
1 TATTCAATAATAATCAGTTATCCAGTATAAATCAA
81512201 TTGATCGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (36 bp):
TATTCAATAATAATCAGTTATCCAGTATAAATCAAA
Found at i:81513291 original size:19 final size:19
Alignment explanation
Indices: 81513255--81513307 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
81513245 AATAACATTA
*
81513255 TATTATTACTTAT-T-TAT
1 TATTATTACATATGTATAT
*
81513272 TATT-TATACATGTGTATAT
1 TATTAT-TACATATGTATAT
81513291 TATTATTACATATGTAT
1 TATTATTACATATGTAT
81513308 CCATAGATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 1 0.03
17 9 0.31
18 1 0.03
19 17 0.59
20 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.57
Consensus pattern (19 bp):
TATTATTACATATGTATAT
Found at i:81513402 original size:17 final size:20
Alignment explanation
Indices: 81513381--81513421 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
81513371 ATTATTTAAT
81513381 TAATAAATATCTTTT-ATAAA
1 TAATAAATATCTTTTAAT-AA
81513401 TAATAAATATCTTTTAATAA
1 TAATAAATATCTTTTAATAA
81513421 T
1 T
81513422 TAAATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
TAATAAATATCTTTTAATAA
Found at i:81518702 original size:87 final size:87
Alignment explanation
Indices: 81518556--81518729 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
81518546 AAACTAGCAT
*
81518556 GGAGAAGACATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCCTATT
1 GGAGAAGACATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCCCATT
81518621 TTTAATGATTTTTACGTTTTTG
66 TTTAATGATTTTTACGTTTTTG
*
81518643 GGAGAAGACATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCCCGTT
1 GGAGAAGACATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCCCATT
81518708 TTTAATGATTTTTACGTTTTTG
66 TTTAATGATTTTTACGTTTTTG
81518730 AAATCCTCAT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (87 bp):
GGAGAAGACATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCCCATT
TTTAATGATTTTTACGTTTTTG
Found at i:81519568 original size:50 final size:50
Alignment explanation
Indices: 81519446--81519741 Score: 279
Period size: 50 Copynumber: 5.9 Consensus size: 50
81519436 ATTGTGAGAA
* * * * ***
81519446 CACATGTGTAGTACCATGTGCAGGTTACTATGTGTTTAAGATAGTTGTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-T-TAGGT
** *
81519498 CATGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * * * *
81519548 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTTCCCGACAACTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGT
* * * *
81519599 CACGTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
81519649 CACATGTGTAGTACTAAGTGCAGGCTACTACTTGTATCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * *
81519698 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
81519742 CTTTGGTTAC
Statistics
Matches: 195, Mismatches: 48, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
49 39 0.20
50 83 0.43
51 39 0.20
52 34 0.17
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:81519770 original size:150 final size:151
Alignment explanation
Indices: 81519493--81519770 Score: 369
Period size: 150 Copynumber: 1.8 Consensus size: 151
81519483 AAGATAGTTG
** *
81519493 TAGGTCATGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTA
* * ** * *
81519558 GTACTAAGTGCAGGCTACTATGCGTTCCCGACAACTTTGATCACGTGTGTAGTACTAAGTGCATG
66 GTACTAAGTGCAGGCTACTATGCGTACCAGACAACTTTGATCACAAGAGTAGTAATAAGTGCATG
81519623 CTACTACGTGTATCAGATGGT
131 CTACTACGTGTATCAGATGGT
* * * * *
81519644 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACTTGTATCGGATTGTT-GGTTGCATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTA
* * * * * *
81519708 GTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGTTACAAGAGTGGTAATATGTGCA
66 GTACTAAGTGCAGGCTACTATGCGTACCAGACAACTTTGATCACAAGAGTAGTAATAAGTGCA
81519771 GGCAACTATG
Statistics
Matches: 107, Mismatches: 20, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
150 63 0.59
151 44 0.41
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (151 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTA
GTACTAAGTGCAGGCTACTATGCGTACCAGACAACTTTGATCACAAGAGTAGTAATAAGTGCATG
CTACTACGTGTATCAGATGGT
Found at i:81519959 original size:16 final size:15
Alignment explanation
Indices: 81519938--81519967 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81519928 GAATGGAGTA
81519938 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
81519954 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
81519968 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:81524148 original size:29 final size:29
Alignment explanation
Indices: 81524115--81524188 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
81524105 GTGACGAGAT
81524115 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81524144 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81524173 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81524189 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81524204 original size:29 final size:28
Alignment explanation
Indices: 81524172--81524246 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
81524162 CTGGAAATAT
* *
81524172 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
81524201 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
81524229 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
81524247 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:81524215 original size:58 final size:57
Alignment explanation
Indices: 81524115--81524246 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
81524105 GTGACGAGAT
* * * * * *
81524115 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
81524173 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
81524230 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
81524247 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:81525082 original size:16 final size:16
Alignment explanation
Indices: 81525061--81525093 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81525051 AAATCACTAA
81525061 AAATAGT-AGTAGAATT
1 AAATAGTGAGTA-AATT
81525077 AAATAGTGAGTAAATT
1 AAATAGTGAGTAAATT
81525093 A
1 A
81525094 TGGAACTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (16 bp):
AAATAGTGAGTAAATT
Found at i:81531674 original size:29 final size:29
Alignment explanation
Indices: 81531641--81531714 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
81531631 GTGACGAGAT
81531641 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81531670 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81531699 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81531715 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81531730 original size:29 final size:29
Alignment explanation
Indices: 81531698--81531773 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
81531688 CTGGAAATAT
* *
81531698 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
81531727 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
81531756 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
81531774 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:81534521 original size:46 final size:46
Alignment explanation
Indices: 81534471--81534577 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
81534461 CACAGCTCGT
* * * *
81534471 AAGAGCTTACTGTTTCAGCACATTTGAGCTTATCGATT-CAGCTTGA
1 AAGAGCTTACTGTTTCAGCACAATAGAGCTTACCGATTCCAGC-TCA
* *
81534517 AAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCGTTTCCAGCTCA
1 AAGAGCTTACTGTTTCAGCACAATAGAGCTTACCGATTCCAGCTCA
81534562 ATAGAGCTTACTGTTT
1 A-AGAGCTTACTGTTT
81534578 GTCATCTCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
45 23 0.44
46 27 0.52
47 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (46 bp):
AAGAGCTTACTGTTTCAGCACAATAGAGCTTACCGATTCCAGCTCA
Found at i:81534563 original size:24 final size:23
Alignment explanation
Indices: 81534472--81534577 Score: 110
Period size: 23 Copynumber: 4.6 Consensus size: 23
81534462 ACAGCTCGTA
* *
81534472 AGAGCTTACTGTTTCAGCACATT
1 AGAGCTTACTGTTTCAGCTCAAT
* * *
81534495 TGAGCTTA-TCGATTCAGCTTGAA-
1 AGAGCTTACT-GTTTCAGC-TCAAT
81534518 AGAGCTTACTG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
81534540 AGAGCTTACCGTTTCCAGCTCAAT
1 AGAGCTTACTGTTT-CAGCTCAAT
81534564 AGAGCTTACTGTTT
1 AGAGCTTACTGTTT
81534578 GTCATCTCAG
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
21 3 0.04
22 17 0.25
23 24 0.35
24 24 0.35
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:81535572 original size:31 final size:31
Alignment explanation
Indices: 81535530--81535608 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
81535520 TTGAACGGTT
81535530 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
81535561 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
81535592 ATTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
81535609 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:81535679 original size:42 final size:42
Alignment explanation
Indices: 81535632--81535723 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
81535622 TGGCCCTTAG
* ** *
81535632 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
81535674 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
81535716 GCCCATTT
1 GCCCATTT
81535724 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:81535938 original size:26 final size:26
Alignment explanation
Indices: 81535868--81536016 Score: 205
Period size: 26 Copynumber: 5.8 Consensus size: 26
81535858 CCTCTTTAAT
81535868 AACTGGGGCA-AAGCCCTTTTCGGA-A
1 AACTGGGGCATAAGCCCTTTTC-GATA
*
81535893 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
81535918 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
81535944 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
81535970 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
81535996 AACTCGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
81536017 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
24 1 0.01
25 31 0.28
26 80 0.71
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:81535979 original size:52 final size:52
Alignment explanation
Indices: 81535868--81536016 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
81535858 CCTCTTTAAT
* *
81535868 AACTGGGGCA-AAGCCCTTTTCGGAAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
*
81535918 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
*
81535970 AACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTT
81536017 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 9 0.10
51 23 0.25
52 60 0.65
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
Found at i:81536846 original size:27 final size:27
Alignment explanation
Indices: 81536816--81536879 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
81536806 GGGCATATTC
81536816 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
81536843 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
81536870 GTCGTTTTAC
1 GTCATTTTAC
81536880 TTATTAGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:81537099 original size:27 final size:26
Alignment explanation
Indices: 81536913--81537147 Score: 141
Period size: 27 Copynumber: 8.7 Consensus size: 26
81536903 TCATCCTACA
* * *
81536913 AGGGTGTTTTGGTAAATCTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
** **
81536939 AAGGGTATTTCAGTAATTTTGTAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
* * * *
81536966 AATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 -AGGGTATTT-TGGTAA-TTTTACAAA--CC
* *
81536996 AGGGTATTTCT-GTAATTTTATAAATC
1 AGGGTATTT-TGGTAATTTTACAAACC
* **
81537022 AGGGGTATTTTGGTAATTTTATAAATTG
1 A-GGGTATTTTGGTAATTTTACAAA-CC
* *
81537050 AGGGTATTTTGGTAATTTCACAACCC
1 AGGGTATTTTGGTAATTTTACAAACC
* * *
81537076 AGTGGTATTTCGGTAATTTTACAAGCT
1 AG-GGTATTTTGGTAATTTTACAAACC
* *
81537103 AGGGATATTTTGGTAATTTTACAAGCT
1 AGGG-TATTTTGGTAATTTTACAAACC
81537130 AGGGATATTTTGGTAATT
1 AGGG-TATTTTGGTAATT
81537148 CTATCCTACA
Statistics
Matches: 170, Mismatches: 29, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
26 6 0.04
27 133 0.78
28 17 0.10
29 13 0.08
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:81537114 original size:81 final size:81
Alignment explanation
Indices: 81536998--81537147 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
81536988 GAAAGTCAAG
* * * * *
81536998 GGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGG-TATTTTGG
1 GGTATTTCGGTAATTTTACAAATCAGGGATATTTTGGTAATTTTACAAACT-AGGGATATTTTGG
81537062 TAATTTCACAACCCAGT
65 TAATTTCACAACCCAGT
* *
81537079 GGTATTTCGGTAATTTTAC-AAGCTAGGGATATTTTGGTAATTTTACAAGCTAGGGATATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGATATTTTGGTAATTTTACAAACTAGGGATATTTTGG
81537143 TAATT
65 TAATT
81537148 CTATCCTACA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 7 0.12
81 53 0.88
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGATATTTTGGTAATTTTACAAACTAGGGATATTTTGGT
AATTTCACAACCCAGT
Found at i:81537160 original size:27 final size:27
Alignment explanation
Indices: 81537022--81537147 Score: 148
Period size: 27 Copynumber: 4.7 Consensus size: 27
81537012 TTTATAAATC
* * **
81537022 AGGGGTATTTTGGTAATTTTATAAATT
1 AGGGATATTTTGGTAATTTTACAAGCT
* * *
81537049 GAGGG-TATTTTGGTAATTTCACAACCC
1 -AGGGATATTTTGGTAATTTTACAAGCT
*
81537076 AGTGG-TATTTCGGTAATTTTACAAGCT
1 AG-GGATATTTTGGTAATTTTACAAGCT
81537103 AGGGATATTTTGGTAATTTTACAAGCT
1 AGGGATATTTTGGTAATTTTACAAGCT
81537130 AGGGATATTTTGGTAATT
1 AGGGATATTTTGGTAATT
81537148 CTATCCTACA
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.05
27 78 0.91
28 4 0.05
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (27 bp):
AGGGATATTTTGGTAATTTTACAAGCT
Found at i:81537164 original size:81 final size:81
Alignment explanation
Indices: 81536997--81537180 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 81
81536987 AGAAAGTCAA
* * * * *
81536997 GGGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGATATTTTGGTAATTTTACAAACTGAGGGTATTTTGG
81537062 TAATTTCACAACCCAG
66 TAATTTCACAACCCAG
* * * *
81537078 TGGTATTTCGGTAATTTTAC-AAGCTAGGGATATTTTGGTAATTTTACAAGCT-AGGGATATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGATATTTTGGTAATTTTACAAACTGAGGG-TATTTT
* *
81537141 GGTAA-TTC-TATCCTACAG
64 GGTAATTTCACAACC--CAG
*
81537159 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
81537181 TTGAGGGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
79 3 0.04
80 10 0.12
81 71 0.84
82 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGATATTTTGGTAATTTTACAAACTGAGGGTATTTTGG
TAATTTCACAACCCAG
Found at i:81537212 original size:27 final size:27
Alignment explanation
Indices: 81537183--81537360 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81537173 TTTCACAATT
81537183 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTTTGTAAATC
* *
81537209 TGAGGGTAAAATGGTATTTTTGTAAATC
1 -GAGGGTAAAACGGTAATTTTGTAAATC
* * *
81537237 GAGGGTGAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTTTGTAAATC
* * * *
81537264 GAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAACGGTAATTTTGTAAATC
*
81537291 GATGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTTTGTAAATC
* * *
81537318 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTTTGTAAATC
* *
81537345 GAAGGTAAAATGGTAA
1 GAGGGTAAAACGGTAA
81537361 CTCTACAAAT
Statistics
Matches: 126, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTGTAAATC
Found at i:81537253 original size:54 final size:54
Alignment explanation
Indices: 81537183--81537360 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
81537173 TTTCACAATT
* * *
81537183 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTATTTTTGTAAATC
1 GAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATAAATC
* * * *
81537237 GAGGGTGAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATC
* * *
81537291 GATGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATC
* *
81537345 GAAGGTAAAATGGTAA
1 GAGGGTAAAACGGTAA
81537361 CTCTACAAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
54 106 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (54 bp):
GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATC
Found at i:81537298 original size:81 final size:81
Alignment explanation
Indices: 81537183--81537376 Score: 271
Period size: 81 Copynumber: 2.4 Consensus size: 81
81537173 TTTCACAATT
* * * * * *
81537183 GAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTATTTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
*
81537248 AGTAATTCTGTAAATC
66 AGTAATTCTATAAATC
*
81537264 GAGGGTAAAATGGTAATTCTATAAATTGATGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
*
81537329 GGTAATTCTATAAATC
66 AGTAATTCTATAAATC
* * * *
81537345 GAAGGTAAAATGGTAACTCTACAAATCGAGGG
1 GAGGGTAAAATGGTAATTCTATAAATTGAGGG
81537377 CATTTCAGTA
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
AGTAATTCTATAAATC
Found at i:81537388 original size:81 final size:81
Alignment explanation
Indices: 81537226--81537396 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
81537216 AAAATGGTAT
* * * * *
81537226 TTTTGTAAATCGAGGGTGAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
1 TTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCGAAGGTAAAATGGTAACTCTACAAATC
* * *
81537291 GATGGTAAAACGGTAA
66 GAGGGCAAAACAGTAA
*
81537307 TTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAACTCTACAAATC
1 TTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCGAAGGTAAAATGGTAACTCTACAAATC
***
81537372 GAGGGCATTTCAGTAA
66 GAGGGCAAAACAGTAA
*
81537388 TTTGGTAAA
1 TTTTGTAAA
81537397 CTAAAGTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
TTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCGAAGGTAAAATGGTAACTCTACAAATC
GAGGGCAAAACAGTAA
Found at i:81539665 original size:31 final size:31
Alignment explanation
Indices: 81539622--81539700 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
81539612 TTGAACAGTT
*
81539622 ACTGGGTTGAAGCCTTTTCATAAATCATATC
1 ACTGGGTCGAAGCCTTTTCATAAATCATATC
81539653 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGTCGAAGCCTTTTCATAAATCATATC
*
81539684 ATTGGG-CTGAAGCCTTT
1 ACTGGGTC-GAAGCCTTT
81539701 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 1 0.02
31 44 0.98
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (31 bp):
ACTGGGTCGAAGCCTTTTCATAAATCATATC
Found at i:81539771 original size:42 final size:42
Alignment explanation
Indices: 81539724--81539815 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
81539714 TGGCCCTTAG
* ** *
81539724 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
81539766 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
81539808 GCCCATTT
1 GCCCATTT
81539816 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:81540030 original size:26 final size:26
Alignment explanation
Indices: 81539959--81540107 Score: 214
Period size: 26 Copynumber: 5.8 Consensus size: 26
81539949 CCTCTTTAAT
81539959 AACTGGGGCA-AAGCCCTTTTCGAA-A
1 AACTGGGGCATAAGCCCTTTTC-AATA
81539984 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
81540009 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
81540035 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
81540061 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
81540087 AACTCGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
81540108 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
24 2 0.02
25 32 0.28
26 79 0.70
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:81540067 original size:52 final size:52
Alignment explanation
Indices: 81539959--81540107 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
81539949 CCTCTTTAAT
** *
81539959 AACTGGGGCA-AAGCCCTTTTCGAAAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
81540009 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
*
81540061 AACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTT
81540108 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.11
51 22 0.24
52 61 0.66
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
Found at i:81540964 original size:27 final size:27
Alignment explanation
Indices: 81540908--81540964 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
81540898 GTGCATATTC
* *
81540908 GTCATTTTACCATACAAGGGTATTACG
1 GTCACTTTACCATACAAGGCTATTACG
* *
81540935 GTCACTTTACCCTACAATGGCT-TTATG
1 GTCACTTTACCATACAA-GGCTATTACG
81540962 GTC
1 GTC
81540965 TTTTTACTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 22 0.88
28 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCATACAAGGCTATTACG
Found at i:81541056 original size:27 final size:27
Alignment explanation
Indices: 81541026--81541138 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
81541016 GTAAATCTAC
81541026 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
81541053 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
81541079 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** *
81541109 AAATCAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTGT
81541136 AAA
1 AAA
81541139 TTGAGGGTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.01
27 45 0.62
28 7 0.10
29 18 0.25
30 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:81541139 original size:27 final size:28
Alignment explanation
Indices: 81541089--81541239 Score: 147
Period size: 27 Copynumber: 5.6 Consensus size: 28
81541079 AGAAAGTCAA
*
81541089 GGGTATTTCT-GTAATTTTGTAAATC-AG
1 GGGTATTT-TGGTAATTTTATAAATCTAG
81541116 GGGTATTTTGGTAATTTTATAAAT-T-G
1 GGGTATTTTGGTAATTTTATAAATCTAG
* *
81541142 AGGGTATTTTGGTAATTTCACAAA-CTAG
1 -GGGTATTTTGGTAATTTTATAAATCTAG
* * * *
81541170 TGGTATTTCGGTAATTTTA-CAAGCTAG
1 GGGTATTTTGGTAATTTTATAAATCTAG
*
81541197 GGGTATTTTGGTAATTTT-TCAAA-CTAA
1 GGGTATTTTGGTAATTTTAT-AAATCTAG
81541224 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
81541240 CTATCCTACA
Statistics
Matches: 105, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
26 4 0.04
27 98 0.93
28 3 0.03
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.44
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTATAAATCTAG
Found at i:81541175 original size:54 final size:54
Alignment explanation
Indices: 81541116--81541281 Score: 169
Period size: 54 Copynumber: 3.1 Consensus size: 54
81541106 TGTAAATCAG
* *
81541116 GGGTATTTTGGTAATTTTATAAA-TTGAGGGTATTTTGGTAATTTCACAAACT-A
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACAAACTAA
* * **
81541169 GTGGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTTCAAACTAA
1 G-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACTAA
* ** * * *
81541224 GGGTATTTTGGTAATTCTATCCTAC-AAGGGTATTTTAGTAATTTCAC-AATTAA
1 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTCACAAACTAA
81541277 GGGTA
1 GGGTA
81541282 AAACGGTAAT
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
53 11 0.12
54 76 0.82
55 6 0.06
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACTAA
Found at i:81541252 original size:27 final size:27
Alignment explanation
Indices: 81541116--81541267 Score: 143
Period size: 27 Copynumber: 5.6 Consensus size: 27
81541106 TGTAAATCAG
* *
81541116 GGGTATTTTGGTAATTTTAT-AAATTGA
1 GGGTATTTTGGTAA-TTTATCAAACTAA
81541143 GGGTATTTTGGTAATTTCA-CAAACT-A
1 GGGTATTTTGGTAATTT-ATCAAACTAA
* * *
81541169 GTGGTATTTCGGTAATTT-TACAAGCTAG
1 G-GGTATTTTGGTAATTTAT-CAAACTAA
*
81541197 GGGTATTTTGGTAATTTTTCAAACTAA
1 GGGTATTTTGGTAATTTATCAAACTAA
**
81541224 GGGTATTTTGGTAATTCTATCCTAC-AA
1 GGGTATTTTGGTAATT-TATCAAACTAA
*
81541251 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
81541268 CACAATTAAG
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
26 6 0.06
27 93 0.88
28 7 0.07
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTATCAAACTAA
Found at i:81541256 original size:81 final size:79
Alignment explanation
Indices: 81541086--81541272 Score: 200
Period size: 81 Copynumber: 2.3 Consensus size: 79
81541076 TTTAGAAAGT
* * * *
81541086 CAAGGGTATTTCTGTAATTTTGTA-AATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATT
1 CAAGGGTATTTCAGTAA-TTT-TACAAGCAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATT
81541150 TTGGTAATTTCACAAA
64 TTGGTAATTTCACAAA
* *
81541166 CTAGTGGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTT-TCAAACTAAGGGTAT
1 CAAG-GGTATTTCAGTAATTTTACAAGC-AGGGGTATTTTGGTAATTTTAT-AAACTAAGGGTAT
**
81541230 TTTGGTAA-TTCTATCCTA
63 TTTGGTAATTTC-A-CAAA
* *
81541248 CAAGGGTATTTTAGTAATTTCACAA
1 CAAGGGTATTTCAGTAATTTTACAA
81541273 TTAAGGGTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
79 2 0.02
80 13 0.14
81 70 0.78
82 5 0.06
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (79 bp):
CAAGGGTATTTCAGTAATTTTACAAGCAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTT
GGTAATTTCACAAA
Found at i:81541309 original size:27 final size:27
Alignment explanation
Indices: 81541276--81541467 Score: 199
Period size: 27 Copynumber: 7.1 Consensus size: 27
81541266 TTCACAATTA
*
81541276 AGGGTAAAACGGTAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTTTATAAATC-G
* *
81541303 AGGGTAAAATGGTAATTTTTTAAATCG
1 AGGGTAAAACGGTAATTTTATAAATCG
* * *
81541330 AGAGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTTTATAAATCG
* * *
81541357 AGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTTTATAAATCG
* * **
81541384 ATGGTAAAATGGTAATTTCGTAAATCG
1 AGGGTAAAACGGTAATTTTATAAATCG
* *
81541411 AGGGTGAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTTTATAAATCG
* * *
81541438 A-GGTAAAATGGTAACTCTATAAATCG
1 AGGGTAAAACGGTAATTTTATAAATCG
81541464 AGGG
1 AGGG
81541468 CATTTCAGTA
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 23 0.17
27 114 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTTTATAAATCG
Found at i:81541346 original size:54 final size:53
Alignment explanation
Indices: 81541278--81541467 Score: 220
Period size: 54 Copynumber: 3.5 Consensus size: 53
81541268 CACAATTAAG
* *
81541278 GGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTTTAAATCGA
1 GGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATAAATCGA
* * * *
81541331 GAGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGA
1 G-GTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
* * * *
81541385 TGGTAAAATGGTAATTTCGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGA
1 -GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
* * * *
81541439 GGTAAAATGGTAACTCTATAAATCGAGGG
1 GGTAAAACGGTAATTTTGTAAATCGAGGG
81541468 CATTTCAGTA
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 26 0.22
54 88 0.76
55 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (53 bp):
GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGA
Found at i:81541390 original size:81 final size:81
Alignment explanation
Indices: 81541276--81541467 Score: 269
Period size: 81 Copynumber: 2.4 Consensus size: 81
81541266 TTCACAATTA
* * * * **
81541276 AGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTTTAAATCGAGAGTAAAACA
1 AGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTTCGTAAATCGAGAGTAAAACA
81541341 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
* * * *
81541357 AGGGTAAAATGGTAATTCTATAAATTGATGGTAAAATGGTAATTTCGTAAATCGAGGGTGAAACG
1 AGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTTCGTAAATCGAGAGTAAAACA
81541422 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
* *
81541438 A-GGTAAAATGGTAACTCTATAAATCGAGGG
1 AGGGTAAAATGGTAATTCTATAAATTGAGGG
81541468 CATTTCAGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
80 26 0.27
81 72 0.73
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTTCGTAAATCGAGAGTAAAACA
GTAATTCTATAAATCG
Found at i:81549044 original size:47 final size:47
Alignment explanation
Indices: 81548984--81549105 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
81548974 GCATTGGCAC
*
81548984 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
*
81549031 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
81549078 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
81549106 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:81549148 original size:54 final size:54
Alignment explanation
Indices: 81549084--81549279 Score: 236
Period size: 54 Copynumber: 3.6 Consensus size: 54
81549074 TTGGTAAGAT
* * *
81549084 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
81549138 AAGGAAATCATGTAAGACCATGTCAA-GAATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * * *
81549192 AAAGG-TCCCATGTAAGACCATGTCAAGGCTTGGAATTGGTGAGTTC-ATAATGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
81549245 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCA
81549280 ATAGTAAGTT
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 47 0.39
54 52 0.43
55 18 0.15
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:81555993 original size:57 final size:58
Alignment explanation
Indices: 81555930--81556040 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
81555920 AAATTCACAT
* *
81555930 ACCTGTAT-CTAGCCCTTTAAGCCC-AATCAAATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATACTA-CCCATTAAGCCCAAATCAAATTCATATGGCCCATTAAGCCCAAATC
* * * *
81555987 ACCTGTATATTACCCATTAAGCCCAAATCACATTTATATGGCCCGTTAAGCCCA
1 ACCTGTATACTACCCATTAAGCCCAAATCAAATTCATATGGCCCATTAAGCCCA
81556041 GTTGCATTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (58 bp):
ACCTGTATACTACCCATTAAGCCCAAATCAAATTCATATGGCCCATTAAGCCCAAATC
Found at i:81555996 original size:29 final size:29
Alignment explanation
Indices: 81555941--81556040 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 29
81555931 CCTGTATCTA
* *
81555941 GCCCTTTAAGCCC-AATCAAAT-TCATATG
1 GCCCATTAAGCCCAAATCACATGT-ATATG
* * *
81555969 GCCCATTAGGCCCAAATCACCTGTATATT
1 GCCCATTAAGCCCAAATCACATGTATATG
* *
81555998 ACCCATTAAGCCCAAATCACATTTATATG
1 GCCCATTAAGCCCAAATCACATGTATATG
*
81556027 GCCCGTTAAGCCCA
1 GCCCATTAAGCCCA
81556041 GTTGCATTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
28 11 0.19
29 46 0.79
30 1 0.02
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
GCCCATTAAGCCCAAATCACATGTATATG
Found at i:81557995 original size:17 final size:17
Alignment explanation
Indices: 81557973--81558006 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81557963 CAAGGAGAGA
81557973 CCTTAAGGAAAACTAAG
1 CCTTAAGGAAAACTAAG
81557990 CCTTAAGGAAAACTAAG
1 CCTTAAGGAAAACTAAG
81558007 TCCCCCACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (17 bp):
CCTTAAGGAAAACTAAG
Found at i:81561163 original size:39 final size:40
Alignment explanation
Indices: 81561097--81561270 Score: 198
Period size: 39 Copynumber: 4.5 Consensus size: 40
81561087 ACCCAAGTAT
*
81561097 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
81561136 CTT-GGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81561175 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
81561215 CTTC-GGACATAG-CCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
81561253 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
81561271 TTATCATCCG
Statistics
Matches: 113, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
37 3 0.03
38 30 0.27
39 41 0.36
40 37 0.33
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81561240 original size:78 final size:78
Alignment explanation
Indices: 81561097--81561270 Score: 219
Period size: 78 Copynumber: 2.2 Consensus size: 78
81561087 ACCCAAGTAT
* * * *
81561097 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTGGGTCTTAGCCCAGATATAGCA
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGACATAGCCCAGATATAGCA
81561161 ACTCGCACAAATGC
65 ACTCGCACAAATGC
* *
81561175 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGACATAG-CCGGATATAGC
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGACATAGCCCAGATATAGC
*
81561238 AACTCGCACGAATGC
64 AACTCGCACAAATGC
*
81561253 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
81561271 TTATCATCCG
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
77 1 0.01
78 51 0.61
79 31 0.37
80 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGACATAGCCCAGATATAGCAA
CTCGCACAAATGC
Found at i:81569092 original size:40 final size:40
Alignment explanation
Indices: 81569025--81569201 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
81569015 ACCCAAGTAT
*
81569025 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
81569064 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81569104 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
81569144 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
81569184 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
81569202 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81573599 original size:28 final size:29
Alignment explanation
Indices: 81573565--81573670 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
81573555 CACATACCTA
* *
81573565 TATATGGCCCATTAAGCGC-AATCATATT
1 TATATGGCCCATTAAGCCCAAATCACATT
* * * *
81573593 TCTATGGCCCATTAGGCCCAAATCACCTG
1 TATATGGCCCATTAAGCCCAAATCACATT
* *
81573622 TATATTGCCCATTAAGCTCAAATCACATT
1 TATATGGCCCATTAAGCCCAAATCACATT
* *
81573651 TATATGGCCCGTTAGGCCCA
1 TATATGGCCCATTAAGCCCA
81573671 GACGCATTCA
Statistics
Matches: 61, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 16 0.26
29 45 0.74
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAAGCCCAAATCACATT
Found at i:81573626 original size:57 final size:58
Alignment explanation
Indices: 81573560--81573670 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
81573550 AAATTCACAT
* *
81573560 ACCTATATATGGCCCATTAAGCGC-AATCATATTTCTATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCGCAAATCACATTTATATGGCCCATTAGGCCCAAATC
* * * *
81573617 ACCTGTATATTGCCCATTAAGCTCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCGCAAATCACATTTATATGGCCCATTAGGCCCA
81573671 GACGCATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCGCAAATCACATTTATATGGCCCATTAGGCCCAAATC
Found at i:81579333 original size:42 final size:42
Alignment explanation
Indices: 81579272--81579380 Score: 200
Period size: 42 Copynumber: 2.6 Consensus size: 42
81579262 AGTATTGGTC
81579272 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
*
81579314 TTGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
*
81579356 TCGGCACTAAGTGTGCGGGTTTAAA
1 TCGGCACTAAGTGTGCGGGTATAAA
81579381 ATTTGTACAG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (42 bp):
TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
Found at i:81579446 original size:27 final size:28
Alignment explanation
Indices: 81579389--81579458 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81579379 AAATTTGTAC
**
81579389 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
81579417 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
81579444 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81579459 GACTCACTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:81586990 original size:41 final size:41
Alignment explanation
Indices: 81586917--81587017 Score: 184
Period size: 41 Copynumber: 2.4 Consensus size: 41
81586907 AGTATTGGTC
81586917 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGC-GGTATAAATGGACACGGTGACAAGA
*
81586959 TTGGCACTAAGTGTGCGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGTATAAATGGACACGGTGACAAGA
81587000 TCGGCACTAAGTGTGCGG
1 TCGGCACTAAGTGTGCGG
81587018 GTTTAAAATT
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
41 42 0.74
42 15 0.26
ACGTcount: A:0.29, C:0.17, G:0.34, T:0.21
Consensus pattern (41 bp):
TCGGCACTAAGTGTGCGGTATAAATGGACACGGTGACAAGA
Found at i:81587090 original size:27 final size:28
Alignment explanation
Indices: 81587033--81587102 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81587023 AAATTTGTAC
**
81587033 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
81587061 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
81587088 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81587103 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:81588938 original size:41 final size:42
Alignment explanation
Indices: 81588892--81588997 Score: 196
Period size: 41 Copynumber: 2.5 Consensus size: 42
81588882 TATTGGTCTC
81588892 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
81588934 -GCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
81588975 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
81588998 ATTTGTACAG
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
41 41 0.66
42 21 0.34
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:81589046 original size:28 final size:28
Alignment explanation
Indices: 81589006--81589076 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 28
81588996 AAATTTGTAC
**
81589006 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
81589034 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
81589061 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
81589077 CTCACTATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:81596942 original size:42 final size:42
Alignment explanation
Indices: 81596895--81597001 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
81596885 TATTGGTCTC
81596895 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
81596937 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
81596979 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
81597002 ATTTGTACAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:81597066 original size:27 final size:28
Alignment explanation
Indices: 81597010--81597079 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
81597000 AAATTTGTAC
*
81597010 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGTTGATTATAT
*
81597038 AGCACTATGTGTGCG-AGTTGATTATAT
1 AGCACTAAGTGTGCGAAGTTGATTATAT
81597065 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81597080 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 25 0.64
28 14 0.36
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGTTGATTATAT
Found at i:81599213 original size:27 final size:27
Alignment explanation
Indices: 81599103--81599220 Score: 119
Period size: 27 Copynumber: 4.4 Consensus size: 27
81599093 TGGATAAGTT
* * *
81599103 GTAGAATTACTAAAATACCCCTGTACG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
81599130 ATAGAATTACCGAAAAACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
81599157 GTAGAAATACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
81599184 GTAGAATTACTGAGATACTCTTGTGGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
81599211 GTAAAATTAC
1 GTAGAATTAC
81599221 CATTTTTCCC
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCTTGTAGG
Found at i:81599971 original size:2 final size:2
Alignment explanation
Indices: 81599964--81599991 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81599954 GCTTCGCCAC
81599964 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81599992 CTGTTCTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81604867 original size:27 final size:27
Alignment explanation
Indices: 81604824--81604927 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
81604814 GATAAGTTGT
*
81604824 ATACCC-TGTAGGATAGAATTACCGAA
1 ATACCCTTGTAGGGTAGAATTACCGAA
*
81604850 ATACCCTTGTAGGGTAGAAATACCGAA
1 ATACCCTTGTAGGGTAGAATTACCGAA
* *
81604877 ATACCCCTGTAGGGTAGAATTACCGAG
1 ATACCCTTGTAGGGTAGAATTACCGAA
* *
81604904 ATACCCTTGTGGGGTAAAATTACC
1 ATACCCTTGTAGGGTAGAATTACC
81604928 ATTTCGCCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
26 6 0.09
27 63 0.91
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
ATACCCTTGTAGGGTAGAATTACCGAA
Found at i:81605709 original size:27 final size:26
Alignment explanation
Indices: 81605672--81605730 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81605662 TCATATATAT
*
81605672 ATATCT-TTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
81605697 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
81605724 ATATCTG
1 ATATCTG
81605731 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.21
26 1 0.04
27 21 0.75
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:81608025 original size:27 final size:27
Alignment explanation
Indices: 81607995--81608167 Score: 215
Period size: 27 Copynumber: 6.4 Consensus size: 27
81607985 GGGGCAAAAT
* * * *
81607995 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81608022 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81608049 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81608076 GATAATTCTATCCC-ACAGGGGTACTTT-
1 GGTAATTCTA-CCCTACAGGGGTA-TTTC
81608103 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
81608130 AATAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
81608157 GGTAATTCTAC
1 GGTAATTCTAC
81608168 AACTTATCCA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.05
27 115 0.91
28 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:81613284 original size:47 final size:46
Alignment explanation
Indices: 81613165--81613337 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
81613155 GGGATATTTG
*
81613165 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
81613212 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
*
81613258 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
81613305 -AC-GCCGAGC-CGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
81613338 TATGGGCGGG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
44 24 0.22
45 7 0.06
46 34 0.31
47 33 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:81618968 original size:27 final size:27
Alignment explanation
Indices: 81618936--81619108 Score: 143
Period size: 27 Copynumber: 6.4 Consensus size: 27
81618926 GGGGCAAAAT
* *
81618936 GGTAATTTTACCCTAAAAAGGTATCTC
1 GGTAATTTTACCCTAAAAGGGTATTTC
* * *
81618963 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTAAAAGGGTATTTC
* *
81618990 GGT-ATTTCTACCCTACAAGGGTATTTA
1 GGTAATTT-TACCCTAAAAGGGTATTTC
* * * *
81619017 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTAAAAGGGTATTTC
* * * * *
81619044 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTAAAAGGGTATTTC
* * *
81619071 GGTAATTCTA-CCTGATAGGGGTATTTC
1 GGTAATTTTACCCT-AAAAGGGTATTTC
81619098 GGTAATTTTAC
1 GGTAATTTTAC
81619109 AACTTATCCA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.05
27 113 0.93
28 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTAAAAGGGTATTTC
Found at i:81619050 original size:81 final size:81
Alignment explanation
Indices: 81618955--81619104 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
81618945 ACCCTAAAAA
* * *
81618955 GGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCT-ACAAGGGTATTTAGG
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCTGACAAGGGTATTTAGG
81619019 TAATTCTATCCTACAGG
65 TAATTCTATCCTACAGG
* * * * *
81619036 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCTGATAGGGGTATTTCGGT
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTGACAAGGGTATTTAGGT
81619101 AATT
66 AATT
81619105 TTACAACTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 3 0.05
81 57 0.95
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (81 bp):
GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTGACAAGGGTATTTAGGT
AATTCTATCCTACAGG
Found at i:81619103 original size:54 final size:54
Alignment explanation
Indices: 81618936--81619104 Score: 223
Period size: 54 Copynumber: 3.1 Consensus size: 54
81618926 GGGGCAAAAT
* * * * *
81618936 GGTAATTTTACCCTAAAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCTATAGGGGTATTTC
* * *
81618990 GGTATTTCTACCCTACAAGGGTATTTAGGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCTATAGGGGTATTTC
* * *
81619044 AGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA-CCTGATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCT-ATAGGGGTATTTC
81619098 GGTAATT
1 GGTAATT
81619105 TTACAACTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 3 0.03
54 97 0.97
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCTATAGGGGTATTTC
Found at i:81621015 original size:43 final size:43
Alignment explanation
Indices: 81620968--81621049 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
81620958 CTAAGACATT
* * *
81620968 GGCATCGATATGAGATTACATGTAAGACCCTGTTTGGGACAGA
1 GGCATCGATATGAGATAACATGTAAGACCATATTTGGGACAGA
* *
81621011 GGCATCGATATGCGATAACATGTATGACCATATTTGGGA
1 GGCATCGATATGAGATAACATGTAAGACCATATTTGGGA
81621050 TATGACATTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (43 bp):
GGCATCGATATGAGATAACATGTAAGACCATATTTGGGACAGA
Found at i:81624137 original size:46 final size:45
Alignment explanation
Indices: 81624070--81624242 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
81624060 TGTAACCCGC
81624070 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
81624116 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** *
81624162 ACATCTCTCGAACTCGGACTCAACTCAACGAG--CGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
81624207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
81624243 ATGCCAAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 25 0.24
45 8 0.08
46 44 0.42
47 25 0.24
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:81624235 original size:91 final size:92
Alignment explanation
Indices: 81624078--81624247 Score: 297
Period size: 91 Copynumber: 1.8 Consensus size: 92
81624068 GCCCATAAGT
* *
81624078 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGC-CGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81624143 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAGCTCGGATGCCTAGTTACATCTCTC
81624171 GAACTCGGACTCAACTCAACGAG-CGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
81624235 GAGTTCGGATGCC
66 GAGCTCGGATGCC
81624248 AAAATATCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 51 0.69
93 23 0.31
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81629680 original size:46 final size:46
Alignment explanation
Indices: 81629566--81629688 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
81629556 TGTAACCCGC
* * * * *
81629566 CCATAAGTGAACTCGGACTCAAATCAACAAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
81629612 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
81629658 CCATAAGTGAACTCGGACTCAACACAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
81629689 TTCAGATGCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81636152 original size:30 final size:30
Alignment explanation
Indices: 81636118--81636177 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
81636108 CTTGGGACAA
81636118 GTGGTGCTAGCTTTGCTCCTCTATTCTAGT
1 GTGGTGCTAGCTTTGCTCCTCTATTCTAGT
81636148 GTGGTGCTAGCTTTGCTCCTCTATTCTAGT
1 GTGGTGCTAGCTTTGCTCCTCTATTCTAGT
81636178 AGGTTAGGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.43
Consensus pattern (30 bp):
GTGGTGCTAGCTTTGCTCCTCTATTCTAGT
Found at i:81637272 original size:27 final size:27
Alignment explanation
Indices: 81637242--81637337 Score: 84
Period size: 27 Copynumber: 3.6 Consensus size: 27
81637232 CCGATTTTTG
* *
81637242 AAATTATCAAAATACTCTTGGGTTGTA
1 AAATTACCGAAATACTCTTGGGTTGTA
* * *** *
81637269 AAATTACCGAAATACCCCTAATTTGTG
1 AAATTACCGAAATACTCTTGGGTTGTA
** * *
81637296 AAATTATTGATACACTCTTGGGTTGTA
1 AAATTACCGAAATACTCTTGGGTTGTA
81637323 AAATTACCGAAATAC
1 AAATTACCGAAATAC
81637338 CCCTATAGGG
Statistics
Matches: 47, Mismatches: 22, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
AAATTACCGAAATACTCTTGGGTTGTA
Found at i:81637298 original size:54 final size:54
Alignment explanation
Indices: 81637210--81637342 Score: 187
Period size: 54 Copynumber: 2.5 Consensus size: 54
81637200 AGACCCCAAT
* * * *
81637210 TTGTAAAATTACCGAAATTTCCCC-GATTTTTGAAATTATCAAAATACTCTTGGG
1 TTGTAAAATTACCGAAA-TACCCCTAATTTGTGAAATTATCAAAACACTCTTGGG
** *
81637264 TTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTATTGATACACTCTTGGG
1 TTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTATCAAAACACTCTTGGG
81637318 TTGTAAAATTACCGAAATACCCCTA
1 TTGTAAAATTACCGAAATACCCCTA
81637343 TAGGGTAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
53 5 0.07
54 66 0.93
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTATCAAAACACTCTTGGG
Found at i:81637378 original size:54 final size:54
Alignment explanation
Indices: 81637320--81637440 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
81637310 CTCTTGGGTT
* * *
81637320 GTAAAATTACCGA-AATACCCCTATAGGGTAAAATGACCGTAATGCCCTTAAAGG
1 GTAAAATGA-CGATAATACCCCTATAGGGTAAAATAACCGTAATACCCTTAAAGG
* * ** *
81637374 GTAAAATGACTATAATACCCCTGTAGGGTAAAATAACCGTAATACCCTTGTATG
1 GTAAAATGACGATAATACCCCTATAGGGTAAAATAACCGTAATACCCTTAAAGG
81637428 GTAAAATGACGAT
1 GTAAAATGACGAT
81637441 TATGCCCTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 55 0.96
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (54 bp):
GTAAAATGACGATAATACCCCTATAGGGTAAAATAACCGTAATACCCTTAAAGG
Found at i:81637449 original size:27 final size:27
Alignment explanation
Indices: 81637320--81637437 Score: 128
Period size: 27 Copynumber: 4.4 Consensus size: 27
81637310 CTCTTGGGTT
* * * *
81637320 GTAAAATTACCGAAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCTTGTAGG
* **
81637347 GTAAAATGACCGTAATGCCCTTAAAGG
1 GTAAAATGACCGTAATACCCTTGTAGG
** *
81637374 GTAAAATGACTATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCTTGTAGG
* *
81637401 GTAAAATAACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCCTTGTAGG
81637428 GTAAAATGAC
1 GTAAAATGAC
81637438 GATTATGCCC
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCTTGTAGG
Found at i:81638759 original size:40 final size:40
Alignment explanation
Indices: 81638682--81638859 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
81638672 AAACCAAGTA
* *
81638682 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
81638721 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81638761 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81638801 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81638841 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81638860 TTATCATCTG
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.11
40 110 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81646759 original size:40 final size:40
Alignment explanation
Indices: 81646682--81646899 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
81646672 AAACCAAGTA
* *
81646682 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
81646721 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81646761 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81646801 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81646841 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81646881 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81646900 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81654787 original size:40 final size:40
Alignment explanation
Indices: 81654717--81654974 Score: 362
Period size: 40 Copynumber: 6.5 Consensus size: 40
81654707 AAACCAAGTA
* *
81654717 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
81654756 CCTTTGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81654796 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81654836 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81654876 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81654916 CCTTCAGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81654956 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81654975 TTATCATCCG
Statistics
Matches: 200, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.09
40 180 0.90
41 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81657043 original size:28 final size:28
Alignment explanation
Indices: 81656989--81657050 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
81656979 ATTACGTTAT
* * * **
81656989 ACTGATACTGTATTGGGCTTAGGCCCAC
1 ACTGTTACTGTATAGGGCTAAACCCCAC
*
81657017 ACTGTTACTGTATAGGGCTAAACCCCAG
1 ACTGTTACTGTATAGGGCTAAACCCCAC
81657045 ACTGTT
1 ACTGTT
81657051 TTGTTCTTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAACCCCAC
Found at i:81661445 original size:28 final size:27
Alignment explanation
Indices: 81661406--81661475 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
81661396 AAATTTGTAC
*
81661406 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
81661434 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
*
81661461 AACACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81661476 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:81661486 original size:27 final size:27
Alignment explanation
Indices: 81661429--81661487 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
81661419 TGAGTTTGAT
* * * *
81661429 TATATAGCACTAAGTGTGCGAGTTGAT
1 TATATAACACTAAGTGTGCGAGCTCAC
81661456 TATATAACACTAAGTGTGCG-GACTCAC
1 TATATAACACTAAGTGTGCGAG-CTCAC
81661483 TATAT
1 TATAT
81661488 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (27 bp):
TATATAACACTAAGTGTGCGAGCTCAC
Found at i:81663815 original size:21 final size:21
Alignment explanation
Indices: 81663789--81663833 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
81663779 TTTTAGATTA
*
81663789 AGAAATACGATATCCAGACCT
1 AGAAATACGAAATCCAGACCT
81663810 AGAAATACGAAATCCAGACCT
1 AGAAATACGAAATCCAGACCT
81663831 AGA
1 AGA
81663834 CCAAGGGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (21 bp):
AGAAATACGAAATCCAGACCT
Found at i:81664146 original size:48 final size:48
Alignment explanation
Indices: 81664073--81664342 Score: 269
Period size: 48 Copynumber: 5.6 Consensus size: 48
81664063 CAGGTGCGCT
* * ** *
81664073 AGTGTAAGACCATGTCTAGGG-CATGGCGTTGGCCATGATATGAGAACC
1 AGTGTAAGACCATGT-TTGGGACATGGCATCAGCCATGATATGAGAGCC
* *
81664121 AGTGTAAGACCATGTTTGGAACATGGCATCAGCC-TCGACATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCAT-GATATGAGAGCC
* * * *
81664169 AGTGTAAGACTATGTTTGGGACATGGCATCAG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCA-TGATATGAGAGCC
*** * * *
81664217 AGTGTAAGACCATGCCAGGGACATGGCACCAGCCA-CATTACGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCATGA-TATGAGAGCC
* * * *
81664265 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATTTGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCATGATATGAGAGCC
* *
81664313 AATGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
81664343 GGCAATTCAC
Statistics
Matches: 181, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
47 6 0.03
48 171 0.94
49 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCAGCCATGATATGAGAGCC
Found at i:81664328 original size:144 final size:144
Alignment explanation
Indices: 81664066--81664342 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 144
81664056 TGGGTGACAG
* **** * *
81664066 GTGCGCTAGTGTAAGACCATGTCTAGGGCATGGCGTTGGCCATGATATGAGAACCAGTGTAAGAC
1 GTGCGCTAGTGTAAGACCATGTCCAGGGCATGGCACCAGCCATCATACGAGAACCAGTGTAAGAC
* * * *
81664131 CATGTTTGGAACATGGCATCAGCCTCGACATGAGAGCCAGTGTAAGACTATGTTTGGGACATGGC
66 CATGTCTGGAACATGGCATCAGCCTCGACATGAGAGCCAATGTAAGACCATGTTTGGAACATGGC
81664196 ATCAGCATTGATAT
131 ATCAGCATTGATAT
*
81664210 GTGCGCTAGTGTAAGACCATG-CCAGGGACATGGCACCAGCCA-CATTACGAGAGCCAGTGTAAG
1 GTGCGCTAGTGTAAGACCATGTCCAGGG-CATGGCACCAGCCATCA-TACGAGAACCAGTGTAAG
* * ** *
81664273 ACCATGTCTGGGACATGGCATCAGCCTTGATTTGTGAGCCAATGTAAGACCATGTTTGGAACATG
64 ACCATGTCTGGAACATGGCATCAGCCTCGACATGAGAGCCAATGTAAGACCATGTTTGGAACATG
81664338 GCATC
129 GCATC
81664343 GGCAATTCAC
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
143 6 0.05
144 108 0.95
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (144 bp):
GTGCGCTAGTGTAAGACCATGTCCAGGGCATGGCACCAGCCATCATACGAGAACCAGTGTAAGAC
CATGTCTGGAACATGGCATCAGCCTCGACATGAGAGCCAATGTAAGACCATGTTTGGAACATGGC
ATCAGCATTGATAT
Found at i:81667295 original size:33 final size:33
Alignment explanation
Indices: 81667251--81667342 Score: 121
Period size: 33 Copynumber: 2.8 Consensus size: 33
81667241 GTAACGGTCA
* * * *
81667251 GGGCCTGAGCCCTGTTCAATAACAGTAAAGTTT
1 GGGCCTAAGCCCTATGCAATAACAGTAAAGTCT
* *
81667284 GGGCCTAAGCCCTATGCAGTAACAGTACAGTCT
1 GGGCCTAAGCCCTATGCAATAACAGTAAAGTCT
*
81667317 GGGCCTAAGCCTTATGCAATAACAGT
1 GGGCCTAAGCCCTATGCAATAACAGT
81667343 GTGGGCCTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (33 bp):
GGGCCTAAGCCCTATGCAATAACAGTAAAGTCT
Found at i:81667504 original size:23 final size:23
Alignment explanation
Indices: 81667478--81667542 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
81667468 AGCAATATCG
* *
81667478 CAGCATAGCTGCTAATAGTAACA
1 CAGCAAAGCTACTAATAGTAACA
*
81667501 CAGCAAAGCTACTAGTAGTAACA
1 CAGCAAAGCTACTAATAGTAACA
*
81667524 CAACAAAGCTACTAATAGT
1 CAGCAAAGCTACTAATAGT
81667543 GGTAAACGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (23 bp):
CAGCAAAGCTACTAATAGTAACA
Found at i:81670099 original size:33 final size:33
Alignment explanation
Indices: 81670047--81670152 Score: 99
Period size: 34 Copynumber: 3.2 Consensus size: 33
81670037 AACAGTATAT
* * *
81670047 ACAGTAACGGTCTAGGCCTGAGCCCTATTCAATA
1 ACAGTAA-AGTCTGGGCCTGAGCCCTATTCAGTA
81670081 ACAGTACAA-TCTGGGCCTGAGCCCATATGT-AGTA
1 ACAGTA-AAGTCTGGGCCTGAGCCC-TAT-TCAGTA
* * * *
81670115 ATAGTAAAGTTTGGGCCTAAGCCCTATGCAGTA
1 ACAGTAAAGTCTGGGCCTGAGCCCTATTCAGTA
81670148 ACAGT
1 ACAGT
81670153 GTGGGCCTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
33 27 0.46
34 30 0.51
35 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (33 bp):
ACAGTAAAGTCTGGGCCTGAGCCCTATTCAGTA
Found at i:81670320 original size:23 final size:23
Alignment explanation
Indices: 81670294--81670347 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
81670284 ATCACAGCGT
* *
81670294 AGCTGCTACTAGTAACGCAGCAA
1 AGCTGCTACTAGTAACACAACAA
*
81670317 AGCTGCTAGTAGTAACACAACAA
1 AGCTGCTACTAGTAACACAACAA
81670340 AGCTGCTA
1 AGCTGCTA
81670348 ATAGCGGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (23 bp):
AGCTGCTACTAGTAACACAACAA
Found at i:81679453 original size:10 final size:11
Alignment explanation
Indices: 81679423--81679456 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
81679413 ACTTAATATG
*
81679423 CCACCGGTACT
1 CCACCGGAACT
81679434 CCACCGGAACT
1 CCACCGGAACT
81679445 CCA-CGGAACT
1 CCACCGGAACT
81679455 CC
1 CC
81679457 TCCGTCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.12
Consensus pattern (11 bp):
CCACCGGAACT
Found at i:81685444 original size:41 final size:41
Alignment explanation
Indices: 81685399--81685516 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81685389 TGAAAGATAA
81685399 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81685440 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81685470 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81685511 ATGTAG
1 ATGTAG
81685517 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81685455 original size:71 final size:71
Alignment explanation
Indices: 81685367--81685530 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81685357 GAGATGTATC
81685367 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81685432 AGGACA
66 AGGACA
81685438 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81685503 AGGACA
66 AGGACA
81685509 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81685531 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81693023 original size:41 final size:41
Alignment explanation
Indices: 81692978--81693095 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81692968 TGAAAGATAA
81692978 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81693019 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81693049 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81693090 ATGTAG
1 ATGTAG
81693096 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81693034 original size:71 final size:71
Alignment explanation
Indices: 81692946--81693109 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81692936 GAGATGTATC
81692946 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81693011 AGGACA
66 AGGACA
81693017 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81693082 AGGACA
66 AGGACA
81693088 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81693110 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81698026 original size:6 final size:5
Alignment explanation
Indices: 81697988--81698051 Score: 60
Period size: 6 Copynumber: 12.2 Consensus size: 5
81697978 CATGTCTTTC
*
81697988 AAAAT AAGAAT AAAAT -AAGT AAAAT AAAAT AAGAAT AAGAAT -AAAT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AA-AAT AA-AAT AAAAT
81698034 AAAAAT AAAAAT AAAAT A
1 -AAAAT -AAAAT AAAAT A
81698052 GGAGGATTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
4 6 0.12
5 22 0.42
6 24 0.46
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81698027 original size:31 final size:33
Alignment explanation
Indices: 81697990--81698051 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
81697980 TGTCTTTCAA
* *
81697990 AATAAGAATAAA-ATAAGT-AAAATAAAATAAG
1 AATAAGAATAAATAAAAATAAAAATAAAATAAG
81698021 AATAAGAATAAATAAAAATAAAAATAAAATA
1 AATAAGAATAAATAAAAATAAAAATAAAATA
81698052 GGAGGATTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 12 0.44
32 4 0.15
33 11 0.41
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (33 bp):
AATAAGAATAAATAAAAATAAAAATAAAATAAG
Found at i:81698035 original size:16 final size:17
Alignment explanation
Indices: 81697990--81698051 Score: 78
Period size: 16 Copynumber: 3.9 Consensus size: 17
81697980 TGTCTTTCAA
81697990 AATAAGAATAAAATAAG
1 AATAAGAATAAAATAAG
81698007 --TAA-AATAAAATAAG
1 AATAAGAATAAAATAAG
*
81698021 AATAAGAAT-AAATAAA
1 AATAAGAATAAAATAAG
*
81698037 AATAAAAATAAAATA
1 AATAAGAATAAAATA
81698052 GGAGGATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 11 0.28
15 3 0.08
16 17 0.44
17 8 0.21
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AATAAGAATAAAATAAG
Found at i:81699926 original size:37 final size:37
Alignment explanation
Indices: 81699873--81699975 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
81699863 CGAATAGTCC
*
81699873 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
81699910 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
81699947 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
81699976 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:81700174 original size:48 final size:48
Alignment explanation
Indices: 81700116--81700405 Score: 526
Period size: 48 Copynumber: 6.0 Consensus size: 48
81700106 ATATACACAC
* * *
81700116 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
81700164 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81700212 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81700260 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81700308 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
81700356 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81700404 AT
1 AT
81700406 ATTTATCTTG
Statistics
Matches: 235, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 235 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:81705481 original size:35 final size:35
Alignment explanation
Indices: 81705442--81705512 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
81705432 CTTGTTTATA
81705442 ACCTTACCACATCCCGGTCACTTAATGAACACATC
1 ACCTTACCACATCCCGGTCACTTAATGAACACATC
*
81705477 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCCGGTCACTTAATGAACACATC
81705512 A
1 A
81705513 TTCACATAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.08, T:0.24
Consensus pattern (35 bp):
ACCTTACCACATCCCGGTCACTTAATGAACACATC
Found at i:81712290 original size:29 final size:30
Alignment explanation
Indices: 81712258--81712322 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
81712248 GTTTATCATC
81712258 ATATATATTATATATACTAAAACT-CACAT
1 ATATATATTATATATACTAAAACTGCACAT
* * * *
81712287 ATATACATTATGTATAGTAGAACTGCACAT
1 ATATATATTATATATACTAAAACTGCACAT
81712317 ATATAT
1 ATATAT
81712323 GTACTATGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (30 bp):
ATATATATTATATATACTAAAACTGCACAT
Found at i:81712429 original size:32 final size:32
Alignment explanation
Indices: 81712350--81712461 Score: 118
Period size: 32 Copynumber: 3.4 Consensus size: 32
81712340 AACCCGTACA
* * *
81712350 AATATATTATACATATAACACTCATGCACGTT
1 AATATATTATATATTTAACACCCATGCACGTT
81712382 AATATATTATATATTTAACACCCATGCACG-T
1 AATATATTATATATTTAACACCCATGCACGTT
* * * * *
81712413 ATATATTTTATTTATTTAACATCCACGCATGTT
1 A-ATATATTATATATTTAACACCCATGCACGTT
81712446 AATAAATATTATATAT
1 AAT--ATATTATATAT
81712462 AAAACACAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
31 2 0.03
32 53 0.80
33 2 0.03
34 9 0.14
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.40
Consensus pattern (32 bp):
AATATATTATATATTTAACACCCATGCACGTT
Found at i:81717696 original size:39 final size:39
Alignment explanation
Indices: 81717652--81717846 Score: 293
Period size: 39 Copynumber: 5.0 Consensus size: 39
81717642 GATGTGTATG
*
81717652 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
81717691 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
*
81717730 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
81717768 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 AAT-GTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
81717808 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
81717847 GTTTGTACGG
Statistics
Matches: 142, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 129 0.91
40 11 0.08
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (39 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:81717745 original size:78 final size:78
Alignment explanation
Indices: 81717654--81717846 Score: 325
Period size: 78 Copynumber: 2.5 Consensus size: 78
81717644 TGTGTATGAA
* *
81717654 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAAT-GTGCGAATTATGATATCCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AATGGTGCGAACTATGATATCCGGGCTA
81717718 AGCCCGAAGGCAAT
65 AGCCCGAAGGCAAT
*
81717732 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAACTATGATATCCGGGCTAA
81717797 GCCCGAAGGCAAT
66 GCCCGAAGGCAAT
*
81717810 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
81717847 GTTTGTACGG
Statistics
Matches: 109, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
77 3 0.03
78 97 0.89
79 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (78 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAACTATGATATCCGGGCTAA
GCCCGAAGGCAAT
Found at i:81723418 original size:27 final size:28
Alignment explanation
Indices: 81723364--81723419 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
81723354 TTAGAATACT
*
81723364 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTTACTAAAAATACCGAAATACCC
* *
81723392 TTAGTTT-GTAAAAATACTGAAATACCC
1 TTAGTTTACTAAAAATACCGAAATACCC
81723419 T
1 T
81723420 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (28 bp):
TTAGTTTACTAAAAATACCGAAATACCC
Done.