Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 266 of 425
Found at i:81723426 original size:27 final size:27
Alignment explanation
Indices: 81723373--81723444 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
81723363 TTTAGTTTAC
* *
81723373 TAAAATTACCGAAATACCCTTAGTTTG
1 TAAAAATACCGAAATACCCTGAGTTTG
*
81723400 TAAAAATACTGAAATACCCTCGA-TTTG
1 TAAAAATACCGAAATACCCT-GAGTTTG
** *
81723427 TAAATTTAGCGAAATACC
1 TAAAAATACCGAAATACC
81723445 TTTGACTTGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (27 bp):
TAAAAATACCGAAATACCCTGAGTTTG
Found at i:81723706 original size:27 final size:27
Alignment explanation
Indices: 81723468--81723705 Score: 282
Period size: 27 Copynumber: 8.8 Consensus size: 27
81723458 ATTACCAAAG
*
81723468 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
81723495 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * *
81723522 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * *
81723549 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
81723576 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
81723603 CACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
81723630 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** * *
81723657 TACCCTTTATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81723684 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81723706 TAAAATACCC
Statistics
Matches: 189, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 187 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:81724977 original size:25 final size:25
Alignment explanation
Indices: 81724948--81724995 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81724938 TTATAACGTG
* * *
81724948 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81724973 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81724996 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81725046 original size:9 final size:9
Alignment explanation
Indices: 81725034--81725110 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
81725024 TTTGATAAAC
81725034 ATGATATGT
1 ATGATATGT
*
81725043 ATGATATGCAC
1 ATGATATG--T
81725054 ATGATATGT
1 ATGATATGT
*
81725063 ATGATATGCAC
1 ATGATATG--T
*
81725074 ATGACATGT
1 ATGATATGT
* *
81725083 GTGATATGCAC
1 ATGATATG--T
81725094 ATGATATGT
1 ATGATATGT
81725103 ATGATATG
1 ATGATATG
81725111 CACATGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:81725057 original size:20 final size:20
Alignment explanation
Indices: 81725032--81725122 Score: 155
Period size: 20 Copynumber: 4.5 Consensus size: 20
81725022 ATTTTGATAA
81725032 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81725052 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
81725072 ACATGACATGTGTGATATGC
1 ACATGATATGTATGATATGC
81725092 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81725112 ACATGAGATGT
1 ACATGATATGT
81725123 TCATAAATGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 66 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81725059 original size:11 final size:11
Alignment explanation
Indices: 81725043--81725117 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
81725033 CATGATATGT
81725043 ATGATATGCAC
1 ATGATATGCAC
*
81725054 ATGATATG--T
1 ATGATATGCAC
81725063 ATGATATGCAC
1 ATGATATGCAC
* *
81725074 ATGACATG--T
1 ATGATATGCAC
*
81725083 GTGATATGCAC
1 ATGATATGCAC
*
81725094 ATGATATG--T
1 ATGATATGCAC
81725103 ATGATATGCAC
1 ATGATATGCAC
81725114 ATGA
1 ATGA
81725118 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81725199 original size:23 final size:23
Alignment explanation
Indices: 81725169--81725284 Score: 189
Period size: 23 Copynumber: 5.0 Consensus size: 23
81725159 AGGAAGTGCA
81725169 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81725192 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
81725217 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81725240 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
81725263 AAAGGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCC-CCAGTTAT
81725285 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
22 5 0.06
23 61 0.69
25 23 0.26
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:81725240 original size:48 final size:46
Alignment explanation
Indices: 81725169--81725284 Score: 189
Period size: 48 Copynumber: 2.5 Consensus size: 46
81725159 AGGAAGTGCA
81725169 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT--T
81725217 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
81725263 AAAGGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCC-CCAGTTAT
81725285 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
45 5 0.08
46 16 0.24
48 45 0.68
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:81725513 original size:31 final size:31
Alignment explanation
Indices: 81725475--81725538 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
81725465 CGTTTACAGT
*
81725475 AAAGGCTTCGGTCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
81725506 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81725537 AA
1 AA
81725539 CATGAAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81728316 original size:27 final size:27
Alignment explanation
Indices: 81728235--81728335 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
81728225 TTTAGTTTAC
81728235 TAAAATTACCGAAATACCCTT-AGTTTG
1 TAAAATTACCGAAATACCCTTGA-TTTG
* * *
81728262 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTGATTTG
* * *
81728289 TAAATTTACCGAAATACCTTTGACTTG
1 TAAAATTACCGAAATACCCTTGATTTG
81728316 TAAAATTACC-AAAGTACCCT
1 TAAAATTACCGAAA-TACCCT
81728336 CATTTACAGA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.93
28 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTTGATTTG
Found at i:81728370 original size:27 final size:27
Alignment explanation
Indices: 81728332--81728562 Score: 240
Period size: 27 Copynumber: 8.6 Consensus size: 27
81728322 TACCAAAGTA
*
81728332 CCCTCATTTACAGAATTACCGTTTTAC
1 CCCTGATTTACAGAATTACCGTTTTAC
* *
81728359 CCCTAATTTACATAATTACCGTTTTAC
1 CCCTGATTTACAGAATTACCGTTTTAC
* * *
81728386 CCCTAATTTACATAATTACCATTTTAC
1 CCCTGATTTACAGAATTACCGTTTTAC
* *
81728413 CCC-GATTTACATAATTATCGTTTTA-
1 CCCTGATTTACAGAATTACCGTTTTAC
*
81728438 CCCTCGATTTACAGAATTACTGTTTTA-
1 CCCT-GATTTACAGAATTACCGTTTTAC
*
81728465 CCCTCGATTTACAGAATTACCATTTTA-
1 CCCT-GATTTACAGAATTACCGTTTTAC
* *
81728492 CCCTCGATTTATAGAATTACTGTTTTAC
1 CCCT-GATTTACAGAATTACCGTTTTAC
* * *
81728520 CCTTTATTTACA-AATTACTGTTTTA-
1 CCCTGATTTACAGAATTACCGTTTTAC
*
81728545 CCCTCGATTTACAAAATT
1 CCCT-GATTTACAGAATT
81728563 GCTAAAATAC
Statistics
Matches: 180, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
25 6 0.03
26 39 0.22
27 132 0.73
28 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (27 bp):
CCCTGATTTACAGAATTACCGTTTTAC
Found at i:81728405 original size:54 final size:54
Alignment explanation
Indices: 81728330--81728562 Score: 287
Period size: 54 Copynumber: 4.4 Consensus size: 54
81728320 ATTACCAAAG
*
81728330 TACCCTC-ATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTACCGTTT
* * * *
81728383 TACCC-CTAATTTACATAATTACCATTTTACCCC-GATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTACCGTTT
* * *
81728436 TACCCTCGATTTACAGAATTACTGTTTTA-CCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCT-GATTTACATAATTACCGTTT
* * * * *
81728490 TACCCTCGATTTATAGAATTACTGTTTTACCCTTTATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTACCGTTT
*
81728543 TACCCTCGATTTACAAAATT
1 TACCCTCGATTTACAGAATT
81728563 GCTAAAATAC
Statistics
Matches: 156, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
52 4 0.03
53 73 0.47
54 76 0.49
55 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTACCGTTT
Found at i:81728448 original size:107 final size:107
Alignment explanation
Indices: 81728330--81728562 Score: 287
Period size: 107 Copynumber: 2.2 Consensus size: 107
81728320 ATTACCAAAG
* *
81728330 TACCCTC-ATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTTTACCC-CTAA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AATTTACAGAATTACCATTTTACCCTC-AA
*
81728392 TTTACATAATTACCATTTTACCC-CGATTTACATAATTA-TCGTTT
64 TTTACAGAATTACCATTTTACCCTCGATTTACA-AATTACT-GTTT
* * *
81728436 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
* ** **
81728501 TATAGAATTACTGTTTTACCCTTTATTTACAAATTACTGTTT
66 TACAGAATTACCATTTTACCCTCGATTTACAAATTACTGTTT
*
81728543 TACCCTCGATTTACAAAATT
1 TACCCTCGATTTACAGAATT
81728563 GCTAAAATAC
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
106 7 0.06
107 93 0.85
108 10 0.09
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (107 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
TACAGAATTACCATTTTACCCTCGATTTACAAATTACTGTTT
Found at i:81728575 original size:80 final size:81
Alignment explanation
Indices: 81728330--81728562 Score: 305
Period size: 80 Copynumber: 2.9 Consensus size: 81
81728320 ATTACCAAAG
* * * * *
81728330 TACCCTC-ATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCC-CTAAT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTC-GAT
*
81728393 TTACATAATTACCATTT
65 TTACAAAATTACCATTT
* **
81728410 TACCC-CGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGAT
*
81728473 TTACAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
81728490 TACCCTCGATTTATAGAATTACTGTTTTACCCTTTATTTACA-AATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGATT
81728554 TACAAAATT
66 TACAAAATT
81728563 GCTAAAATAC
Statistics
Matches: 134, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 101 0.75
81 31 0.23
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:81728591 original size:80 final size:81
Alignment explanation
Indices: 81728317--81728575 Score: 260
Period size: 80 Copynumber: 3.2 Consensus size: 81
81728307 TTTGACTTGT
* * * * * *
81728317 AAAATTACCAAAGTACCCTC-ATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCG
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACTGTTTTACCCTC-GATTTACAGAATTACTG
*
81728380 TTTTACCC-CTAATTTAC
65 TTTTACCCTC-GATTTAC
* *** * *
81728397 ATAATTACCATTTTACCC-CGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACTG
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACT-GTTTTACCCTCGATTTACAGAATTACTG
81728460 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
* *** **
81728477 AGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTTATTTACA-AATTACTGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGT
81728541 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* *
81728557 AAAATTGCTAAAATACCCT
1 AAAATTACCAAAATACCCT
81728576 TGGTTTGTGA
Statistics
Matches: 152, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 118 0.78
81 32 0.21
82 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGT
TTTACCCTCGATTTAC
Found at i:81729825 original size:25 final size:25
Alignment explanation
Indices: 81729796--81729843 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81729786 CCTTATAATG
* * *
81729796 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81729821 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81729844 GTTTATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81729892 original size:9 final size:9
Alignment explanation
Indices: 81729880--81729954 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
81729870 TTTGATAAAC
81729880 ATGATATGT
1 ATGATATGT
*
81729889 ATGATATGCAC
1 ATGATATG--T
81729900 ATGATATGT
1 ATGATATGT
*
81729909 ATGATATGC
1 ATGATATGT
*
81729918 A-CATAATGT
1 ATGAT-ATGT
* *
81729927 GTGATATGCAC
1 ATGATATG--T
81729938 ATGATATGT
1 ATGATATGT
81729947 ATGATATG
1 ATGATATG
81729955 CACATGAGAT
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
8 2 0.04
9 31 0.62
10 2 0.04
11 15 0.30
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (9 bp):
ATGATATGT
Found at i:81729931 original size:18 final size:20
Alignment explanation
Indices: 81729878--81729966 Score: 146
Period size: 20 Copynumber: 4.5 Consensus size: 20
81729868 ATTTTGATAA
81729878 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81729898 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81729918 ACAT-A-ATGTGTGATATGC
1 ACATGATATGTATGATATGC
81729936 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81729956 ACATGAGATGT
1 ACATGATATGT
81729967 TCATAAATGC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
18 16 0.25
19 2 0.03
20 46 0.72
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81729932 original size:38 final size:38
Alignment explanation
Indices: 81729885--81729959 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
81729875 TAAACATGAT
81729885 ATGTATGATATGCACATGATATGTATGATATGCACATA
1 ATGTATGATATGCACATGATATGTATGATATGCACATA
*
81729923 ATGTGTGATATGCACATGATATGTATGATATGCACAT
1 ATGTATGATATGCACATGATATGTATGATATGCACAT
81729960 GAGATGTTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (38 bp):
ATGTATGATATGCACATGATATGTATGATATGCACATA
Found at i:81730043 original size:23 final size:23
Alignment explanation
Indices: 81730013--81730176 Score: 287
Period size: 23 Copynumber: 7.1 Consensus size: 23
81730003 AGGAAGTGCA
81730013 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81730036 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
81730059 AAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATT
81730082 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81730104 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81730127 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81730150 AAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAGGGCTTATGCCCCAGTTATT
81730174 AAA
1 AAA
81730177 AGAGGCTAGG
Statistics
Matches: 136, Mismatches: 2, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
22 24 0.18
23 90 0.66
24 13 0.10
25 9 0.07
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:81730080 original size:46 final size:46
Alignment explanation
Indices: 81730013--81730176 Score: 287
Period size: 45 Copynumber: 3.6 Consensus size: 46
81730003 AGGAAGTGCA
81730013 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
81730059 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
81730104 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
81730150 AAAAAGGGCTT-TGCCCCAGTTATTAAA
1 --AAAGGGCTTATGCCCCAGTTATTAAA
81730177 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
45 44 0.39
46 44 0.39
47 16 0.14
48 9 0.08
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:81730122 original size:68 final size:71
Alignment explanation
Indices: 81730012--81730176 Score: 302
Period size: 68 Copynumber: 2.4 Consensus size: 71
81730002 GAGGAAGTGC
81730012 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
81730077 TTA-T-
66 TTATTA
81730081 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
81730145 TTATTA
66 TTATTA
81730151 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
81730177 AGAGGCTAGG
Statistics
Matches: 93, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
68 54 0.58
69 16 0.17
70 23 0.25
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
TTATTA
Found at i:81737674 original size:28 final size:28
Alignment explanation
Indices: 81737634--81737689 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
81737624 ATCCCTTATG
*
81737634 GTGCAGATATCCTAAACCCTCAAATCCT
1 GTGCAAATATCCTAAACCCTCAAATCCT
81737662 GTGCAAATATCCTAAACCCTCAAATCCT
1 GTGCAAATATCCTAAACCCTCAAATCCT
81737690 TACTTCCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.32, G:0.09, T:0.25
Consensus pattern (28 bp):
GTGCAAATATCCTAAACCCTCAAATCCT
Found at i:81739332 original size:2 final size:2
Alignment explanation
Indices: 81739325--81739357 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
81739315 TTTCCCCCTT
81739325 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81739358 TTTTGTTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81740795 original size:29 final size:28
Alignment explanation
Indices: 81740759--81740863 Score: 122
Period size: 29 Copynumber: 3.6 Consensus size: 28
81740749 AATAATCGAT
*
81740759 CTCGCACACTTAGTGCCATGTGATTTAAG
1 CTCGCACACTTAGTGCCAT-TAATTTAAG
*
81740788 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCAT-TAATTTAAG
* *
81740817 TTCGCACACTTAGTGCCA-TACCTTTCAAG
1 CTCGCACACTTAGTGCCATTA-ATTT-AAG
*
81740846 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
81740864 ATCTTGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 61 0.92
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (28 bp):
CTCGCACACTTAGTGCCATTAATTTAAG
Found at i:81744225 original size:29 final size:28
Alignment explanation
Indices: 81744193--81744258 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
81744183 CCTATAACCG
81744193 CATATATATTATATATAATAGAACTC-ACA
1 CATATATATTATATATAATAGAAC-CGA-A
* *
81744222 CATATATATTATGTATAGTAGAACCGAA
1 CATATATATTATATATAATAGAACCGAA
81744250 CATATATAT
1 CATATATAT
81744259 GTATTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 11 0.32
29 23 0.68
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (28 bp):
CATATATATTATATATAATAGAACCGAA
Found at i:81744331 original size:34 final size:34
Alignment explanation
Indices: 81744287--81744405 Score: 148
Period size: 34 Copynumber: 3.5 Consensus size: 34
81744277 ACTCGCGCAA
* *
81744287 ATATACTATACATATAACACCCATGCACCCAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
* * *
81744321 ATATATTATACATATAACACCAATACACATAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
* * * *
81744355 ATTTATTATATATTTAACACCCATGCACGCAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
*
81744389 ATATATTATATATATAA
1 ATATATTATACATATAA
81744406 ATAACAAAAC
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 71 1.00
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (34 bp):
ATATATTATACATATAACACCCATGCACACAAAT
Found at i:81754871 original size:45 final size:45
Alignment explanation
Indices: 81754763--81754982 Score: 279
Period size: 45 Copynumber: 5.0 Consensus size: 45
81754753 CTGAATTCAT
* * * *
81754763 TCACCGGTATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
81754805 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
81754850 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
81754895 TCACTGGCATTATAGCCTTCTAGGCTCAAAGGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
81754940 TCACCGGCATTATAGCCTGCTATGCTCAAAGGCCTGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
81754983 CTGTGCGATA
Statistics
Matches: 155, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
42 9 0.06
43 14 0.09
44 10 0.06
45 121 0.78
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:81755827 original size:47 final size:47
Alignment explanation
Indices: 81755771--81755912 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
81755761 AAAATTTTCT
*
81755771 TTAACTAAGTAACTTATCCGGAAATAATAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
* *
81755818 TTAACTAAGTAACTAATCCGAAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
*
81755865 TTAACTAAGTAACTTATCCGGAAATATTAAGAGC-AATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
81755911 TT
1 TT
81755913 TAAATTCAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 14 0.16
47 75 0.84
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.27
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
Found at i:81762337 original size:45 final size:44
Alignment explanation
Indices: 81762192--81762365 Score: 221
Period size: 45 Copynumber: 4.0 Consensus size: 44
81762182 CTGAATTCAT
* * *
81762192 TCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGT-ATC
81762234 TCACCGGCATTATAGCCTGCTAGGCTCGAAAG-CCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAGTATC
* * * *
81762278 TCAACAGTAGTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATC
81762323 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTA
81762366 CTGTGCGATA
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
42 11 0.10
43 20 0.17
44 32 0.28
45 52 0.45
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATC
Found at i:81763219 original size:47 final size:47
Alignment explanation
Indices: 81763163--81763304 Score: 223
Period size: 47 Copynumber: 3.0 Consensus size: 47
81763153 AAAATTTTCA
* * *
81763163 TTAACTAAGTAACTTATCCTGAAATAATAAGGGCAAATTTAATAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
* *
81763210 TTAACTAAGTAACTTATCCGGAAATATTAAGGGAAAAATTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
*
81763257 TTAACTAAGTAACTTATCCGGAAATATTAAGAGC-AATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
81763303 TT
1 TT
81763305 TAAATTCAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 13 0.15
47 74 0.85
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
Found at i:81767793 original size:27 final size:27
Alignment explanation
Indices: 81767763--81768361 Score: 654
Period size: 27 Copynumber: 22.1 Consensus size: 27
81767753 AAGTACTCCT
*
81767763 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
81767790 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** ** *
81767817 GATTTTTA-AAGTTATTGTTTTACACTC
1 GATTTACAGAA-TTACCGTTTTACCCTC
*
81767844 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
81767871 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
81767898 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
81767925 -AGTTTACAGAATTACCGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTC
81767952 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** *
81767979 -AGTTTATAGAATTACTATTTTACACTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
81768006 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** *
81768033 AATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
81768060 AATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
81768087 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
81768114 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
81768141 -AGTTTATAGAATTATTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* * **
81768168 GATTTATAAAAATTATTGTTTTACCCTC
1 GATTTA-CAGAATTACCGTTTTACCCTC
** *
81768196 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
81768223 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** * * *
81768250 AATTTGTAAAATTACCATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* *
81768277 GATTTACAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
81768304 -AGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* * *
81768331 AATTTACAGAATTACCATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
81768358 GATT
1 GATT
81768362 GTGAAATTAC
Statistics
Matches: 497, Mismatches: 60, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
26 8 0.02
27 457 0.92
28 32 0.06
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:81768404 original size:27 final size:27
Alignment explanation
Indices: 81768374--81768700 Score: 230
Period size: 27 Copynumber: 12.0 Consensus size: 27
81768364 GAAATTACTA
*
81768374 AAATACCCTTGTAGGGTAGAATTTCCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
81768401 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
81768428 AAATACCCTTATAAGATAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
81768455 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
81768482 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
81768509 AAATACCCCTACAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
81768536 AGATACCCTTGTGGGGTAAAATTACC-
1 AAATACCCTTGTAGGGTAGAATTACCG
** * * * * *
81768562 ATTTTGCCC--CTAGGGTGTTGAATGACTGTTTTG
1 A-AATACCCTTGTA-GG-GTAGAATTAC-----CG
*** * *
81768595 CCCTACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
81768622 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
81768649 AAATACCCCTATAGGGTAAAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
81768676 -AGTACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
81768701 ATTTTGCCCC
Statistics
Matches: 229, Mismatches: 60, Indels: 23
0.73 0.19 0.07
Matches are distributed among these distances:
25 1 0.00
26 24 0.10
27 189 0.83
32 11 0.05
33 2 0.01
34 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:81768435 original size:54 final size:54
Alignment explanation
Indices: 81768366--81768561 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
81768356 TTGATTGTGA
* *
81768366 AATTACTAAAATACCCTTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * * *
81768420 AATTACTGAAATACCCTTATAAGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* *
81768474 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTACAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
81768528 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
81768562 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 120 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:81768633 original size:140 final size:139
Alignment explanation
Indices: 81768458--81768737 Score: 515
Period size: 140 Copynumber: 2.0 Consensus size: 139
81768448 ATTACCAAAA
81768458 TACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTACAG
1 TACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTACAG
* * *
81768523 GGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCATTTTGCCCCTAGGGTGTTGAATGAC
66 GGTAAAATTACCGAG-TACCCTTGTGGGGTAAAATTACCATTTTGCCCCTAAGGTGTTAAATGAC
81768588 TGTTTTGCCC
130 TGTTTTGCCC
*
81768598 TACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAG
1 TACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTACAG
81768663 GGTAAAATTACCGAGTACCCTTGTGGGGTAAAATTACCATTTTGCCCCTAAGGTGTTAAATGACT
66 GGTAAAATTACCGAGTACCCTTGTGGGGTAAAATTACCATTTTGCCCCTAAGGTGTTAAATGACT
81768728 GTTTTGCCC
131 GTTTTGCCC
81768737 T
1 T
81768738 TATGGGCAAG
Statistics
Matches: 136, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
139 58 0.43
140 78 0.57
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (139 bp):
TACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTACAG
GGTAAAATTACCGAGTACCCTTGTGGGGTAAAATTACCATTTTGCCCCTAAGGTGTTAAATGACT
GTTTTGCCC
Found at i:81768937 original size:27 final size:26
Alignment explanation
Indices: 81768899--81768981 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
81768889 CGGAGGAAGC
*
81768899 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
81768926 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
81768952 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
81768979 GTT
1 GTT
81768982 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:81769492 original size:6 final size:6
Alignment explanation
Indices: 81769483--81769669 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
81769473 TTGCATTCAC
* * *
81769483 ATTCTG ATTCTG ATTCT- ATCACGTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
81769532 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
81769580 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
81769629 ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
81769670 CATTTTGGTT
Statistics
Matches: 148, Mismatches: 17, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 12 0.08
6 122 0.82
7 10 0.07
8 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81769623 original size:85 final size:85
Alignment explanation
Indices: 81769483--81769669 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
81769473 TTGCATTCAC
* *
81769483 ATTCTGATTCTGATTCTATCACGTAATTCTGATTCTGATTTTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
81769548 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
81769568 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
81769633 TGATTCTGATTTTGTTACTG
66 TGATTCTGATTCTGTTACTG
81769653 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
81769670 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:81769676 original size:30 final size:30
Alignment explanation
Indices: 81769483--81769669 Score: 235
Period size: 30 Copynumber: 6.4 Consensus size: 30
81769473 TTGCATTCAC
* *
81769483 ATTCTGATTCTGATTCTATCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
81769514 ATTCTGATTTTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
81769544 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
81769568 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
81769599 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
81769629 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
81769659 ATTCTGATTCT
1 ATTCTGATTCT
81769670 CATTTTGGTT
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
24 21 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 68 0.49
31 43 0.31
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:81772543 original size:28 final size:29
Alignment explanation
Indices: 81772512--81772650 Score: 146
Period size: 28 Copynumber: 4.9 Consensus size: 29
81772502 CATACATGCG
* *
81772512 TATGGCCCACTAGGCCCAA-TCTCATTTA
1 TATGGCCCACTAGGCCCAATTCACATTCA
81772540 TATGGCCCATCT-GGCCCAATTCACATTCA
1 TATGGCCCA-CTAGGCCCAATTCACATTCA
81772569 T-TGGCCCA-TCAGGCCCAATTCACATTCA
1 TATGGCCCACT-AGGCCCAATTCACATTCA
* * *
81772597 TATGGCCCATTAGGCCCAA-TCTCATTTA
1 TATGGCCCACTAGGCCCAATTCACATTCA
* *
81772625 TGTGGCCCATCTA-GCCCAAATCACAT
1 TATGGCCCA-CTAGGCCCAATTCACAT
81772651 GATATTCATG
Statistics
Matches: 96, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.01
28 62 0.65
29 32 0.33
30 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAATTCACATTCA
Found at i:81772613 original size:57 final size:57
Alignment explanation
Indices: 81772514--81772650 Score: 167
Period size: 57 Copynumber: 2.4 Consensus size: 57
81772504 TACATGCGTA
* *
81772514 TGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATCTGGCCCAATTCACATTCAT-
1 TGGCCCATCTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAA-TCACATTCATG
* *
81772570 TGGCCCATC-AGGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAATCTCATTTATG
1 TGGCCCATCTAGGCCCAA-TCACATTCATATGGCCCATCT-GGCCCAATCACATTCATG
81772627 TGGCCCATCTA-GCCCAAATCACAT
1 TGGCCCATCTAGGCCC-AATCACAT
81772651 GATATTCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
56 24 0.34
57 44 0.62
58 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.27
Consensus pattern (57 bp):
TGGCCCATCTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAATCACATTCATG
Found at i:81774178 original size:28 final size:27
Alignment explanation
Indices: 81774112--81774181 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
81774102 ATAGTGAGTC
*
81774112 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
81774139 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
81774167 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81774182 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:81774259 original size:42 final size:42
Alignment explanation
Indices: 81774190--81774296 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
81774180 CTGTACAAAT
* *
81774190 TTTAAACCCACACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
81774232 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
81774274 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
81774297 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.23, C:0.34, G:0.13, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:81778894 original size:46 final size:46
Alignment explanation
Indices: 81778804--81779020 Score: 147
Period size: 46 Copynumber: 4.7 Consensus size: 46
81778794 CGAGTAAGGT
81778804 GCCAATGCCAT-TCCCAGACATGGTCTTACACTAACTATCATCTCGTA-
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAACTATCATCTCG-AG
* ** *
81778851 GTCAATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTAACTAT-CATCTCGAG
* * * * * *
81778897 GCCGATGCATGTCCCAGGCATGTCTTACACTAGC-ACTCATATTGAT
1 GCCAATGCATGTCCCAGACATGTCTTACACTAACTA-TCATCTCGAG
* * * ** * * *
81778943 GCCGATGTCATGTCCCAAATATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAACTATCAT-CTCGAG
* *
81778991 GCCGATGCATGTCCCATACATGTCTTACAC
1 GCCAATGCATGTCCCAGACATGTCTTACAC
81779021 CAGCTCATAA
Statistics
Matches: 140, Mismatches: 21, Indels: 19
0.78 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 72 0.51
47 40 0.29
48 24 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCGAG
Found at i:81778974 original size:48 final size:46
Alignment explanation
Indices: 81778896--81779020 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 46
81778886 TACGTCTCGA
** *
81778896 GGCCGATGCATGTCCCAGGCATGTCTTACACTAGCACTCATATTGAT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATAATG-T
* * *
81778943 -GCCGATGTCATGTCCCAAATATGGTCTTACACTGGCTCTCATAATGT
1 GGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCATAATGT
*
81778990 GGCCGATGCATGTCCCATACATGTCTTACAC
1 GGCCGATGCATGTCCCAAACATGTCTTACAC
81779021 CAGCTCATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
46 16 0.24
47 24 0.36
48 27 0.40
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATAATGT
Found at i:81779002 original size:47 final size:47
Alignment explanation
Indices: 81778855--81779020 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 47
81778845 CTCGTAGTCA
* * *
81778855 ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTC-T--CGA-GGCCG
1 ATGCATGTCCCAAACATGTCTTACACTAGC--AC-TCATAATGATGGCCG
** *
81778901 ATGCATGTCCCAGGCATGTCTTACACTAGCACTCATATTGAT-GCCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCACTCATAATGATGGCCG
* * *
81778947 ATGTCATGTCCCAAATATGGTCTTACACTGGCTCTCATAATG-TGGCCG
1 ATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCATAATGATGGCCG
*
81778995 ATGCATGTCCCATACATGTCTTACAC
1 ATGCATGTCCCAAACATGTCTTACAC
81779021 CAGCTCATAA
Statistics
Matches: 102, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
46 46 0.45
47 24 0.24
48 27 0.26
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCACTCATAATGATGGCCG
Found at i:81781003 original size:23 final size:24
Alignment explanation
Indices: 81780977--81781021 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
81780967 AAAATCAAAA
*
81780977 AAAAAAAAAAG-AAAGCAATTCGC
1 AAAAAAAAAAGCAAAGAAATTCGC
*
81781000 AAAAAAAAGAGCAAAGAAATTC
1 AAAAAAAAAAGCAAAGAAATTC
81781022 AAAAAGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.67, C:0.11, G:0.13, T:0.09
Consensus pattern (24 bp):
AAAAAAAAAAGCAAAGAAATTCGC
Found at i:81781026 original size:23 final size:23
Alignment explanation
Indices: 81780976--81781026 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
81780966 CAAAATCAAA
*
81780976 AAAAAAAAAAAGAAAGCAATTCG
1 AAAAAAAAAAAGAAAGAAATTCG
* *
81780999 CAAAAAAAAGAGCAAAGAAATTC-
1 AAAAAAAAAAAG-AAAGAAATTCG
81781022 AAAAA
1 AAAAA
81781027 GAAATCGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.71, C:0.10, G:0.12, T:0.08
Consensus pattern (23 bp):
AAAAAAAAAAAGAAAGAAATTCG
Found at i:81781790 original size:28 final size:29
Alignment explanation
Indices: 81781759--81781818 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
81781749 TTAGTTATTT
81781759 TTACTATT-TTATTATTAAAATTAAT-TAA
1 TTACTATTATTA-TATTAAAATTAATATAA
**
81781787 TTACTATTATTATATTATTATTAATATAA
1 TTACTATTATTATATTAAAATTAATATAA
81781816 TTA
1 TTA
81781819 TTGTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (29 bp):
TTACTATTATTATATTAAAATTAATATAA
Found at i:81782034 original size:3 final size:3
Alignment explanation
Indices: 81782021--81782115 Score: 181
Period size: 3 Copynumber: 31.7 Consensus size: 3
81782011 CAAAATTTCA
*
81782021 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
81782069 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
81782116 CTACTTTTAA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:81798693 original size:45 final size:44
Alignment explanation
Indices: 81798521--81798693 Score: 177
Period size: 45 Copynumber: 3.9 Consensus size: 44
81798511 TATAACAGCG
* **
81798521 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGCCACTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAC-A
* * * * **
81798566 AACCTTATCTCTCTGGAGTTACAGTGGAGTAGATTGAAGATACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACA
* ** *
81798610 AGTCTTATCTCCCT-AAGGTTGCAGTGGAGTAGACTGAAGATAGCA
1 AATCTTATCTCCCTGAA-GTTGCAGTGGAACAGATTGAAGATA-CA
* *
81798655 AATCTTATTTCCCTGAAATTGCAGTGGAACAGATTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG
81798694 CTATAGATTA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
43 1 0.01
44 35 0.34
45 66 0.63
46 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACA
Found at i:81799459 original size:24 final size:24
Alignment explanation
Indices: 81799426--81799478 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
81799416 AACAAAATCA
*
81799426 AAAAAAAAAAAAG-AAAGCAATTC
1 AAAAAAAAAAAAGCAAAGAAATTC
*
81799449 ACAAAAAAAAAGAGCAAAGAAATTC
1 A-AAAAAAAAAAAGCAAAGAAATTC
81799474 AAAAA
1 AAAAA
81799479 GAAATCGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.04
24 15 0.58
25 10 0.38
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.08
Consensus pattern (24 bp):
AAAAAAAAAAAAGCAAAGAAATTC
Found at i:81800452 original size:3 final size:3
Alignment explanation
Indices: 81800444--81800675 Score: 306
Period size: 3 Copynumber: 77.3 Consensus size: 3
81800434 CAAAAATTCA
81800444 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
81800492 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT CTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * *
81800541 TAT TAT AAT TAT TAC TAC TAT CAT TAT TAT TGT TAT TAT T-T TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
81800588 TAT TAT TAT GAT GAT GAT TAT TAT TGT TAT TAT TAC TAT TAC GAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
81800635 CTAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
81800676 TTTAAAAACC
Statistics
Matches: 203, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
2 3 0.01
3 197 0.97
4 3 0.01
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:81800780 original size:12 final size:12
Alignment explanation
Indices: 81800765--81800806 Score: 52
Period size: 11 Copynumber: 3.5 Consensus size: 12
81800755 ATTTTTTTTG
81800765 TTATTTCATTTA
1 TTATTTCATTTA
81800777 TTA-TTCTATTTA
1 TTATTTC-ATTTA
81800789 TTTATTTCATTT-
1 -TTATTTCATTTA
81800801 TTATTT
1 TTATTT
81800807 TTATTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 9 0.33
12 8 0.30
13 7 0.26
14 3 0.11
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTTCATTTA
Found at i:81803342 original size:40 final size:40
Alignment explanation
Indices: 81803298--81803397 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
81803288 AATCACGAAC
* ** *
81803298 CTGCTCACATAAGCTGACAGTCAGGATGTAACTACACGGG
1 CTGCTCACACAAGCTGACAGTCAGGACATAACTACACAGG
* *
81803338 CTGCTCACACAAGCTGACAATTAGGACATAACTACACAGG
1 CTGCTCACACAAGCTGACAGTCAGGACATAACTACACAGG
*
81803378 CTACTCACACAAGCTGACAG
1 CTGCTCACACAAGCTGACAG
81803398 GTACCCGCAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (40 bp):
CTGCTCACACAAGCTGACAGTCAGGACATAACTACACAGG
Found at i:81806575 original size:17 final size:17
Alignment explanation
Indices: 81806555--81806602 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
81806545 TTATATATTT
81806555 ATATAAGTTATGATATG
1 ATATAAGTTATGATATG
* *
81806572 ATATATATTTATG-TATT
1 ATATA-AGTTATGATATG
*
81806589 ATGTAAGTTATGAT
1 ATATAAGTTATGAT
81806603 CTTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.24
17 13 0.52
18 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.48
Consensus pattern (17 bp):
ATATAAGTTATGATATG
Found at i:81806665 original size:35 final size:35
Alignment explanation
Indices: 81806619--81806685 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
81806609 TTTTATTATT
*
81806619 CTTTAAATGTTTATTTAAGTTATGATAATCATAGA
1 CTTTAAATGTTTATGTAAGTTATGATAATCATAGA
*
81806654 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATGTTTATGTAAGTTATGATAATCAT
81806686 CTTTAAATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGTTATGATAATCATAGA
Found at i:81807469 original size:31 final size:31
Alignment explanation
Indices: 81807434--81807495 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
81807424 ATAAAGTTAG
81807434 TTTACTTTATTTTCTGGTTCCAAGTTTTGAA
1 TTTACTTTATTTTCTGGTTCCAAGTTTTGAA
81807465 TTTACTTTATTTTCTGGTTCCAAGTTTTGAA
1 TTTACTTTATTTTCTGGTTCCAAGTTTTGAA
81807496 GAGAGATCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (31 bp):
TTTACTTTATTTTCTGGTTCCAAGTTTTGAA
Found at i:81811096 original size:39 final size:39
Alignment explanation
Indices: 81810971--81811098 Score: 152
Period size: 39 Copynumber: 3.3 Consensus size: 39
81810961 ATGCTGGAAA
* * *
81810971 TTATATTCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCC-AAGGC-ATTCGTGCGAGTGG
* * *
81811011 CTACATCCGGGCTAAGACCCAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCAAGGCATTCGTGCGAGTGG
*
81811050 TTCTATCCGGGCTAAGACCCAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCAAGGCATTCGTGCGA-GTGG
81811089 TTATATCCGG
1 TTATATCCGG
81811099 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
38 4 0.05
39 55 0.73
40 16 0.21
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCAAGGCATTCGTGCGAGTGG
Found at i:81812635 original size:39 final size:39
Alignment explanation
Indices: 81812592--81812669 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81812582 GACAATTTGA
81812592 CTTTGTGTTTGTTTATAGTAATGGATCCCGATCCCAACC
1 CTTTGTGTTTGTTTATAGTAATGGATCCCGATCCCAACC
81812631 CTTTGTGTTTGTTTATAGTAATGGATCCCGATCCCAACC
1 CTTTGTGTTTGTTTATAGTAATGGATCCCGATCCCAACC
81812670 GAGCGATAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (39 bp):
CTTTGTGTTTGTTTATAGTAATGGATCCCGATCCCAACC
Found at i:81819161 original size:40 final size:40
Alignment explanation
Indices: 81819034--81819163 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
81819024 ATGCTGGAAA
* *
81819034 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
81819074 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
81819114 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
81819154 TTATATCCGG
1 TTATATCCGG
81819164 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:81821605 original size:29 final size:27
Alignment explanation
Indices: 81821572--81821635 Score: 101
Period size: 29 Copynumber: 2.3 Consensus size: 27
81821562 CGGTGACGAG
*
81821572 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGC-AGCTGGAAA-AT
81821601 ATGGCACTAAGTGTGCAGCTGGAAAAT
1 ATGGCACTAAGTGTGCAGCTGGAAAAT
81821628 ATGGCACT
1 ATGGCACT
81821636 GTGCGAGCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 10 0.29
28 8 0.24
29 16 0.47
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (27 bp):
ATGGCACTAAGTGTGCAGCTGGAAAAT
Found at i:81829436 original size:29 final size:29
Alignment explanation
Indices: 81829402--81829479 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
81829392 GTGACGAGAT
* *
81829402 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
81829431 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
81829460 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
81829480 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:81831193 original size:28 final size:27
Alignment explanation
Indices: 81831151--81831240 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
81831141 ATGACAGAGT
81831151 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
81831180 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
81831207 CACCAGAACAGATAATTCGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
81831235 CACCAG
1 CACCAG
81831241 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 24 0.44
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:81831673 original size:8 final size:8
Alignment explanation
Indices: 81831657--81831688 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
81831647 CCTAAAATAC
81831657 CGGCTTTT
1 CGGCTTTT
*
81831665 CGGCATTT
1 CGGCTTTT
81831673 CGGCTTTT
1 CGGCTTTT
81831681 CGGCTTTT
1 CGGCTTTT
81831689 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:81833420 original size:17 final size:17
Alignment explanation
Indices: 81833380--81833420 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
81833370 TTGTACCATT
* *
81833380 TAATTTTAATTATAAAA
1 TAATTTAAAATATAAAA
81833397 TACATTTAAAATATAAAA
1 TA-ATTTAAAATATAAAA
81833415 TAATTT
1 TAATTT
81833421 TTATTTCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTTAAAATATAAAA
Found at i:81834738 original size:17 final size:16
Alignment explanation
Indices: 81834706--81834739 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81834696 TAACAACTAT
*
81834706 TTATTTTTAAATATAA
1 TTATTTTTAAAAATAA
81834722 TTATTTTTAATAAATAA
1 TTATTTTTAA-AAATAA
81834739 T
1 T
81834740 AATATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTTTTAAAAATAA
Found at i:81835369 original size:20 final size:20
Alignment explanation
Indices: 81835346--81835393 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
81835336 TTATTAATAA
81835346 TTATAAGAAGTTA-TAAAAAC
1 TTATAA-AAGTTACTAAAAAC
* *
81835366 TTATCAAATTTACTAAAAAC
1 TTATAAAAGTTACTAAAAAC
*
81835386 TAATAAAA
1 TTATAAAA
81835394 ATCACATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.31
Consensus pattern (20 bp):
TTATAAAAGTTACTAAAAAC
Found at i:81843077 original size:16 final size:16
Alignment explanation
Indices: 81843056--81843094 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
81843046 ATAGTGGAGG
81843056 AAAGTTAAAAATTAGT
1 AAAGTTAAAAATTAGT
81843072 AAAGTTAAAAATTAGT
1 AAAGTTAAAAATTAGT
*
81843088 TAAGTTA
1 AAAGTTA
81843095 TACGATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (16 bp):
AAAGTTAAAAATTAGT
Found at i:81881265 original size:29 final size:29
Alignment explanation
Indices: 81881233--81881335 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
81881223 ATGACGAGAT
* *
81881233 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
81881262 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
81881291 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
81881320 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81881336 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:81883969 original size:33 final size:33
Alignment explanation
Indices: 81883932--81884021 Score: 162
Period size: 33 Copynumber: 2.7 Consensus size: 33
81883922 AGTCTAATCT
*
81883932 GGATTACTAGTCCAGGCTAAATCCAATCAACTA
1 GGATTACCAGTCCAGGCTAAATCCAATCAACTA
*
81883965 GGATTACCAGTCCAGGCTAAATCCAGTCAACTA
1 GGATTACCAGTCCAGGCTAAATCCAATCAACTA
81883998 GGATTACCAGTCCAGGCTAAATCC
1 GGATTACCAGTCCAGGCTAAATCC
81884022 TAATTGAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (33 bp):
GGATTACCAGTCCAGGCTAAATCCAATCAACTA
Found at i:81894584 original size:26 final size:26
Alignment explanation
Indices: 81894548--81894600 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81894538 GGTGTGCAAG
81894548 AAACTCCGCTTAATTATGACAAATTT
1 AAACTCCGCTTAATTATGACAAATTT
81894574 AAACTCCGCTTAATTATGACAAATTT
1 AAACTCCGCTTAATTATGACAAATTT
81894600 A
1 A
81894601 CTCTTAGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (26 bp):
AAACTCCGCTTAATTATGACAAATTT
Found at i:81898439 original size:40 final size:40
Alignment explanation
Indices: 81898384--81898593 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81898374 AACATTGGAA
81898384 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81898424 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81898464 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81898504 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81898543 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81898584 CTATATCCGG
1 ATATATCCGG
81898594 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81906573 original size:40 final size:40
Alignment explanation
Indices: 81906518--81906727 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81906508 AACATTGGAA
81906518 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81906558 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81906598 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81906638 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81906677 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81906718 CTATATCCGG
1 ATATATCCGG
81906728 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81926247 original size:28 final size:29
Alignment explanation
Indices: 81926180--81926280 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
81926170 ATAGTGAATC
*
81926180 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
81926209 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
81926237 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
81926267 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81926281 CACTCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:81929704 original size:43 final size:42
Alignment explanation
Indices: 81929642--81929763 Score: 142
Period size: 41 Copynumber: 2.9 Consensus size: 42
81929632 TACCATACCA
*
81929642 ATGCC-ATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCAATATCCCAGATATGGTCTTACA-GTAATCTCATATCG
* * *
81929684 ATGCCAATAGCCCAGCTATGGTCTTACA-AAAGTCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACAGTAA-TCTCATATCG
* *
81929726 ATG-CACTATCCCAGATATGGTCTTACACGTAGTCTCAT
1 ATGCCAATATCCCAGATATGGTCTTACA-GTAATCTCAT
81929764 TAACCCTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 23 0.34
42 23 0.34
43 21 0.31
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCAATATCCCAGATATGGTCTTACAGTAATCTCATATCG
Found at i:81929760 original size:42 final size:42
Alignment explanation
Indices: 81929642--81929763 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 42
81929632 TACCATACCA
* *
81929642 ATGCC-ATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCAATATCCCAGATATGGTCTTACA-GTAGTCTCATATCG
* * **
81929684 ATGCCAATAGCCCAGCTATGGTCTTACAAAAGTCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACAGTAGTCTCATATCG
*
81929726 ATG-CACTATCCCAGATATGGTCTTACACGTAGTCTCAT
1 ATGCCAATATCCCAGATATGGTCTTACA-GTAGTCTCAT
81929764 TAACCCTAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 21 0.31
42 26 0.39
43 20 0.30
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCAATATCCCAGATATGGTCTTACAGTAGTCTCATATCG
Found at i:81932577 original size:2 final size:2
Alignment explanation
Indices: 81932570--81932599 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
81932560 TTATTTATCA
*
81932570 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81932600 CACGTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81933286 original size:44 final size:45
Alignment explanation
Indices: 81933213--81933345 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 45
81933203 GTGTAATCAA
* * *
81933213 ATATCGATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAC-T
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACG-AAATCACGT
* *
81933258 A-ATCGATGCCAATATCCTAGACGCGGTCTTACACGAAATCACGT
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACGAAATCACGT
* ** * **
81933302 ATATCGCTGCCAACGTCCCAAACTTGGTCTTACACGAAAATCAC
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACG-AAATCAC
81933346 ATAAATCGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 7 0.10
44 31 0.42
45 28 0.38
46 7 0.10
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (45 bp):
ATATCGATGCCAATATCCCAGACACGGTCTTACACGAAATCACGT
Found at i:81933612 original size:38 final size:38
Alignment explanation
Indices: 81933563--81933751 Score: 297
Period size: 38 Copynumber: 4.9 Consensus size: 38
81933553 TTAAGCTCGA
81933563 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
81933601 ATATAATACCAGCACGAAGCCTGCGTAATTTAACCCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
81933639 ATATAATACTAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
81933677 ATATAATTACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAA-TACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
81933716 ATATAGTACCAGTACGAAGCCTGCGGGATTTAACCC
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCC
81933752 TAGTATGCGG
Statistics
Matches: 137, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 103 0.75
39 34 0.25
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:81933633 original size:77 final size:76
Alignment explanation
Indices: 81933543--81933751 Score: 287
Period size: 77 Copynumber: 2.7 Consensus size: 76
81933533 CAACACAAAA
*
81933543 CCTGCGGACTTTAAGCTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAA-
1 CCTGCGGAATTTAA-C-CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
81933607 TACCAGCACGAAG
64 TACCAGCACGAAG
* * *
81933620 CCTGCGTAATTTAACCCCG-ATATAATACTAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
1 CCTGCGGAATTTAA--CCGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
81933684 TACCAGCACGAAG
64 TACCAGCACGAAG
* * * *
81933697 CCTGCGGGATTTAACCCAGATATAGTACCAGTACGAAGCCTGCGGGATTTAACCC
1 CCTGCGGAATTTAACCGA-ATATAATACCAGCACGAAGCCTGCGGGATTTAACCC
81933752 TAGTATGCGG
Statistics
Matches: 116, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
75 2 0.02
76 42 0.36
77 71 0.61
78 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (76 bp):
CCTGCGGAATTTAACCGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTA
CCAGCACGAAG
Found at i:81933791 original size:58 final size:58
Alignment explanation
Indices: 81933699--81933809 Score: 195
Period size: 58 Copynumber: 1.9 Consensus size: 58
81933689 GCACGAAGCC
* *
81933699 TGCGGGATTTAACCCAGATATAGTACCAGTACGAAGCCTGCGGGATTTAACCCTAGTA
1 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCTAGTA
*
81933757 TGCGGGATTTAACCTAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCC
1 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCC
81933810 GGATACACAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (58 bp):
TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCTAGTA
Found at i:81936952 original size:28 final size:29
Alignment explanation
Indices: 81936885--81936985 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
81936875 ATAGTGAATC
*
81936885 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
81936914 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
81936942 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
81936972 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81936986 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:81944861 original size:28 final size:29
Alignment explanation
Indices: 81944794--81944894 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
81944784 ATAGTGAATC
*
81944794 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
81944823 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
81944851 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
81944881 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81944895 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:81950511 original size:44 final size:45
Alignment explanation
Indices: 81950438--81950570 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 45
81950428 GTGTAATCAA
* * *
81950438 ATATCGATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAC-T
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACG-AAATCACGT
* *
81950483 A-ATCGATGCCAATATCCTAGACGCGGTCTTACACGAAATCACGT
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACGAAATCACGT
* ** * **
81950527 ATATCGCTGCCAACGTCCCAAACTTGGTCTTACACGAAAATCAC
1 ATATCGATGCCAATATCCCAGACACGGTCTTACACG-AAATCAC
81950571 ATAAATCGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 7 0.10
44 31 0.42
45 28 0.38
46 7 0.10
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (45 bp):
ATATCGATGCCAATATCCCAGACACGGTCTTACACGAAATCACGT
Found at i:81950837 original size:38 final size:38
Alignment explanation
Indices: 81950788--81950942 Score: 256
Period size: 38 Copynumber: 4.1 Consensus size: 38
81950778 TTAAGCTCGA
81950788 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
81950826 ATATAATACCAGCACGAAGCCTGCGTAATTTAACCCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
81950864 ATATAATACTAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
81950902 ATATAATACCAGCACGAAGCCTGGGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
81950940 ATA
1 ATA
81950943 CACATCAAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 106 1.00
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:81950878 original size:76 final size:76
Alignment explanation
Indices: 81950768--81950942 Score: 260
Period size: 76 Copynumber: 2.3 Consensus size: 76
81950758 CAACACAAAA
* * * *
81950768 CCTGCGGACTTTAAGCTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 CCTGCGGAATTTAACCCCG-ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
81950833 ACCAGCACGAAG
65 ACCAGCACGAAG
* *
81950845 CCTGCGTAATTTAACCCCGATATAATACTAGCACGAAGCCTGCAGGATTTAACCCGGATATAATA
1 CCTGCGGAATTTAACCCCGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAATA
81950910 CCAGCACGAAG
66 CCAGCACGAAG
* * *
81950921 CCTGGGGGATTTAACCCGGATA
1 CCTGCGGAATTTAACCCCGATA
81950943 CACATCAAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
76 73 0.83
77 15 0.17
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (76 bp):
CCTGCGGAATTTAACCCCGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAATA
CCAGCACGAAG
Found at i:81953816 original size:40 final size:39
Alignment explanation
Indices: 81953651--81953834 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81953641 AAATTGATTG
* * *
81953651 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81953691 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81953731 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81953771 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81953810 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81953835 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81953859 original size:80 final size:81
Alignment explanation
Indices: 81953691--81953879 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81953681 GCTGGAAATT
* * * *
81953691 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81953756 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81953772 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81953835 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81953851 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81953880 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81973394 original size:43 final size:42
Alignment explanation
Indices: 81973269--81973431 Score: 240
Period size: 42 Copynumber: 3.9 Consensus size: 42
81973259 AATGTGACAT
* *
81973269 TCGGACTTTGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
1 TCGGGCTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
81973311 TCGGGCTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
1 TCGGGCTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
*
81973353 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGC-ATAATGCCGGTGAAATGATA
* *
81973396 -CTGGGCTTCGAGCCTAGCAAGCGA-GATGCCGGTGAA
1 TC-GGGCTTCGAGCCTAGCAGGC-ATAATGCCGGTGAA
81973432 TGAGTTCAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
42 73 0.65
43 39 0.35
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.21
Consensus pattern (42 bp):
TCGGGCTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
Found at i:81973425 original size:85 final size:84
Alignment explanation
Indices: 81973269--81973431 Score: 240
Period size: 85 Copynumber: 1.9 Consensus size: 84
81973259 AATGTGACAT
* *
81973269 TCGGACTTTGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCA
1 TCGGACTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAAGCA
81973334 TAATGCCGGTGAAATGATA
66 TAATGCCGGTGAAATGATA
* *
81973353 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATGATA-CTGGGCTTCGAGCCTAGCAAG
1 TCGGACTTCGAGCCTAGCAGGC-ATAATGCCGGTGAAATGATATC-GGGCTTCGAGCCTAGCAAG
*
81973417 CGA-GATGCCGGTGAA
64 C-ATAATGCCGGTGAA
81973432 TGAGTTCAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
84 21 0.30
85 49 0.69
86 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.21
Consensus pattern (84 bp):
TCGGACTTCGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAAGCA
TAATGCCGGTGAAATGATA
Found at i:81974025 original size:16 final size:18
Alignment explanation
Indices: 81973994--81974026 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
81973984 AACTCGTCAC
81973994 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
81974012 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
81974027 ATCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:81976640 original size:40 final size:40
Alignment explanation
Indices: 81976585--81976794 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81976575 AACATTGGAA
81976585 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81976625 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81976665 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81976705 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81976744 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81976785 CTATATCCGG
1 ATATATCCGG
81976795 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81984760 original size:40 final size:40
Alignment explanation
Indices: 81984705--81984914 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81984695 AACATTGGAA
81984705 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81984745 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81984785 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81984825 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81984864 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81984905 CTATATCCGG
1 ATATATCCGG
81984915 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81998910 original size:40 final size:40
Alignment explanation
Indices: 81998866--81999013 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 40
81998856 GAAATTATAA
* * *
81998866 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATTCTAT
81998906 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
81998946 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
*
81998986 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCATTCGTGC
81999014 AAATCGTGAT
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 95 0.94
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
Found at i:81999027 original size:40 final size:39
Alignment explanation
Indices: 81998822--81999045 Score: 175
Period size: 40 Copynumber: 5.6 Consensus size: 39
81998812 AAATTGAATG
* * * *
81998822 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCAT
* * * *
81998862 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CAT
* * *
81998902 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
81998942 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
81998982 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
* * *
81999021 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81999046 CTTGGTGCGG
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
37 4 0.03
38 3 0.02
39 3 0.02
40 144 0.94
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
Found at i:81999027 original size:80 final size:77
Alignment explanation
Indices: 81998823--81999054 Score: 209
Period size: 80 Copynumber: 2.9 Consensus size: 77
81998813 AATTGAATGA
* * * *
81998823 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-TATAACCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCTATATCCGGGTTAAGACCCGAAGGC-
*
81998887 ATTGTGCTAGTGGCTAC
62 ATTGTGCGAGT-GCTAC
* * * * *
81998904 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC--TATATCCGGGTTAAGACCCGAAGGCAT
*
81998968 TCGTGCGAGT-CATTC
64 T-GTGCGAGTGC-TAC
* * *
81998983 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-T-ATATCCGGGTTAAGACCCGAAGGCAT
81999048 TGGTGCG
64 T-GTGCG
81999055 GGTTACCATA
Statistics
Matches: 123, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
77 4 0.03
78 2 0.02
79 9 0.07
80 108 0.88
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (77 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCTATATCCGGGTTAAGACCCGAAGGCATTG
TGCGAGTGCTAC
Found at i:81999070 original size:80 final size:80
Alignment explanation
Indices: 81998906--81999085 Score: 191
Period size: 80 Copynumber: 2.2 Consensus size: 80
81998896 GTGGCTACAT
* * **
81998906 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
81998971 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAA
* * * * * * *
81998986 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
81999051 TGCGGGTTA-CCATAA
66 TGCGAGTCATCC-TAA
* *
81999066 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGACCCGAAGGC
81999086 GATTGATCGA
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
79 1 0.01
80 81 0.99
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAA
Found at i:82006979 original size:30 final size:30
Alignment explanation
Indices: 82006922--82006979 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
82006912 TTTTCAGGCC
* **
82006922 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
82006952 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
82006980 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:82007800 original size:61 final size:61
Alignment explanation
Indices: 82007705--82007829 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
82007695 ATCCTGTTTG
* *
82007705 GTATATATATAGAATATGAGCCCAAATTTTATGATATACGATATGTATTGAATATTGATGA
1 GTATATACATAGAATATGAGCCCAAATTTTATGATATACGATATGTACTGAATATTGATGA
82007766 GTATATACATAGAATATGAGCCCAAATTTTATGATATACGATATGTACTGAATATTGATGA
1 GTATATACATAGAATATGAGCCCAAATTTTATGATATACGATATGTACTGAATATTGATGA
82007827 GTA
1 GTA
82007830 AGTTTTCATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (61 bp):
GTATATACATAGAATATGAGCCCAAATTTTATGATATACGATATGTACTGAATATTGATGA
Found at i:82009486 original size:53 final size:53
Alignment explanation
Indices: 82009313--82009519 Score: 171
Period size: 53 Copynumber: 3.8 Consensus size: 53
82009303 ATTAGGGTTT
* * * * * *
82009313 AAGGATACCAAGTATGACCATGCCTAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCACAAGGC
* * * * * * * * * * * *
82009367 ATGAAAATCATATAAGATCATGTCAAGACATCGCATTGATAAACTACGACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ACAAGGC
* * * *
82009422 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCACAAGGC
* *
82009475 AAGGATACCATGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
82009520 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 37, Indels: 5
0.73 0.24 0.03
Matches are distributed among these distances:
53 46 0.40
54 32 0.28
55 36 0.32
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCACAAGGC
Found at i:82017449 original size:93 final size:93
Alignment explanation
Indices: 82017337--82017507 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82017327 GCCCATAAGT
* *
82017337 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82017402 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82017430 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82017495 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82017508 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82017504 original size:46 final size:46
Alignment explanation
Indices: 82017329--82017504 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
82017319 TGTAACCCGC
* * *
82017329 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82017375 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
82017425 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82017468 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82017505 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82019920 original size:29 final size:29
Alignment explanation
Indices: 82019883--82019966 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
82019873 GATAACAAGA
*
82019883 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
82019911 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
82019940 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
82019967 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:82019932 original size:15 final size:15
Alignment explanation
Indices: 82019879--82019957 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
82019869 CAAAGATAAC
*
82019879 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
82019893 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
82019908 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
82019922 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
82019937 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
82019952 AAGAAA
1 AAGAAA
82019958 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:82019966 original size:15 final size:15
Alignment explanation
Indices: 82019890--82019966 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
82019880 AGAAAACCGA
82019890 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
82019905 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
82019918 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
82019933 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
82019949 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
82019964 ATA
1 ATA
82019967 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82023030 original size:93 final size:93
Alignment explanation
Indices: 82022918--82023088 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82022908 GCCCATAAGT
* *
82022918 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82022983 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82023011 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82023076 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82023089 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82023085 original size:46 final size:46
Alignment explanation
Indices: 82022910--82023085 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
82022900 TGTAACCCGC
* * *
82022910 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82022956 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
82023006 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82023049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82023086 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82033209 original size:93 final size:93
Alignment explanation
Indices: 82033099--82033269 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
82033089 GCCCCTAAGT
*
82033099 GAACTCGGACTCAACTCAACGAGCTCGG-GATCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACAT-TCGCATCCATAAATGAACTCGGACTCAACTCA
82033163 ACGAGTTCGGATGCCTAGTTACATCTAAC
65 ACGAGTTCGGATGCCTAGTTACATCTAAC
* * * *
82033192 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82033257 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82033270 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTAAC
Found at i:82033266 original size:46 final size:46
Alignment explanation
Indices: 82033094--82033266 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
82033084 AACCCGCCCC
* * * *
82033094 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GATCTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-TAGTATCCA
* * *
82033140 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CATTAGTATCCA
* *
82033186 TCTAA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGTATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTATCCA
82033233 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82033267 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 4 0.04
46 66 0.62
47 34 0.32
48 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTATCCA
Found at i:82035882 original size:48 final size:48
Alignment explanation
Indices: 82035811--82036127 Score: 456
Period size: 48 Copynumber: 6.6 Consensus size: 48
82035801 TGAGATCCCA
* *
82035811 TGTAAGACCATGTCTGAGACATGGCATCGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* * *
82035859 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTTCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
*
82035907 TGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
**
82035955 TGTAAGACCATGTCTAAGACATGGCATCGGCATTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* * * *
82036003 TGTAAAACCATGTCTTGGACATGGCATCGGCAATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* * *
82036051 TGTATGACCATGTCTAGGACATGGCATCGGCGA-TGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGATATGTGTGCCAG
* * *
82036099 TGTAAGACCATGTTTGGTACATAGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
82036128 TCACCGATAT
Statistics
Matches: 243, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
48 242 1.00
49 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
Found at i:82038229 original size:32 final size:32
Alignment explanation
Indices: 82038188--82038262 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 32
82038178 CCCAAGCCAC
*
82038188 ACAGGCGTGTGTGACTACACGGCCTAATCCAT
1 ACAGGCGTGTGTGACCACACGGCCTAATCCAT
82038220 ACAGGCGTGTGTGACCACACGGCCTAATCCAT
1 ACAGGCGTGTGTGACCACACGGCCTAATCCAT
*
82038252 ACAAGCGTGTG
1 ACAGGCGTGTG
82038263 ACTCTCTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (32 bp):
ACAGGCGTGTGTGACCACACGGCCTAATCCAT
Found at i:82040289 original size:24 final size:24
Alignment explanation
Indices: 82040262--82040321 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
82040252 ACCGAATTCA
* *
82040262 CACACATAGTGCTA-ATTAAGCTCG
1 CACACATAGTGCTATACTAAAC-CG
82040286 CACACATAGTGCTATACTAAACCG
1 CACACATAGTGCTATACTAAACCG
82040310 CACACATAGTGC
1 CACACATAGTGC
82040322 CTGAAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (24 bp):
CACACATAGTGCTATACTAAACCG
Found at i:82040373 original size:24 final size:24
Alignment explanation
Indices: 82040346--82040395 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
82040336 CATGCATCGA
**
82040346 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCCCACACATAGTGC
* *
82040370 CATTTAATTCCCCACACATAGTGC
1 CATTCAAATCCCCACACATAGTGC
82040394 CA
1 CA
82040396 ATATTAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCCCACACATAGTGC
Found at i:82043547 original size:40 final size:40
Alignment explanation
Indices: 82043492--82043701 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82043482 AACATTGGAA
82043492 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82043532 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82043572 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
82043612 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
82043651 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
82043692 CTATATCCGG
1 ATATATCCGG
82043702 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:82051714 original size:40 final size:41
Alignment explanation
Indices: 82051620--82051844 Score: 212
Period size: 40 Copynumber: 5.6 Consensus size: 41
82051610 TATTCGAATG
*
82051620 ATATCCGGGCTAAG-TCCCGAAGGC-TCTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCAT-TTGTGCTAGTTGACT
* * * * *
82051661 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGACT
* **
82051701 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGACT
* * * *
82051741 ATACCCGGGCTAAAACCCGAAGGCATTTGTGCTAG-CGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGACT
* *
82051781 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTTGACT
* * *
82051821 ACATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
82051845 CTTGTGCAAG
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.01
40 120 0.79
41 28 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGACT
Found at i:82051800 original size:80 final size:80
Alignment explanation
Indices: 82051620--82051880 Score: 251
Period size: 80 Copynumber: 3.3 Consensus size: 80
82051610 TATTCGAATG
* *
82051620 ATATCCGGGCTAAGTCCCGAAGGC-TCTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCAT-TTGTGCTA-GTGACTATAACCAGACTAAAACCCGAAGG
*
82051684 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* ** * * *
82051701 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATACCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCAGACTAAAACCCGAAGGCA
* *
82051766 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * ** * * *
82051781 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCTGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCAGACTAAAACCCGAAGGCA
* * *
82051846 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
82051860 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
82051881 ATTTCTTGAG
Statistics
Matches: 152, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 92 0.61
81 31 0.20
82 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCAGACTAAAACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:82051838 original size:120 final size:120
Alignment explanation
Indices: 82051624--82051880 Score: 299
Period size: 120 Copynumber: 2.1 Consensus size: 120
82051614 CGAATGATAT
* *
82051624 CCGGGCTAAGTCCCGAAGGCTCTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGCATTC
1 CCGGGCTAAATCCCGAAGGCTCTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGCATTC
* * * * * *
82051689 GTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATAC
66 ATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAGTTATAC
* * * *
82051745 CCGGGCTAAAACCCGAAGGCAT-TTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGCAT
1 CCGGGCTAAATCCCGAAGGC-TCTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGGCAT
* * * *
82051807 TTATGCTAG-TGACCACATCTGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATAT
64 TCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATAC
82051864 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAATCCCGAAG
82051881 ATTTCTTGAG
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 14 0.12
119 20 0.17
120 55 0.47
121 26 0.22
122 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAATCCCGAAGGCTCTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGCATTC
ATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATAC
Found at i:82055177 original size:40 final size:40
Alignment explanation
Indices: 82055112--82055221 Score: 123
Period size: 40 Copynumber: 2.8 Consensus size: 40
82055102 ACTAAGATCT
** * * * *
82055112 GAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCC
1 GAAGGCATTTATGCGAGTTGTTATATCCGGGCCAAGACCC
*
82055152 GAAGGCATTTATGCTAG-TGATTATATCCGGGCCAAGACCC
1 GAAGGCATTTATGCGAGTTG-TTATATCCGGGCCAAGACCC
* *
82055192 GACGGCATTTGTGCGAGTTGTTATATCCGG
1 GAAGGCATTTATGCGAGTTGTTATATCCGG
82055222 CTAAATCCCG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 54 0.93
41 2 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
GAAGGCATTTATGCGAGTTGTTATATCCGGGCCAAGACCC
Found at i:82056912 original size:24 final size:25
Alignment explanation
Indices: 82056884--82056947 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
82056874 TCAACCGAAT
* * *
82056884 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
82056908 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
82056933 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
82056948 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Done.