Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 267 of 425
Found at i:82056998 original size:24 final size:24
Alignment explanation
Indices: 82056971--82057016 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
82056961 CATGCATCGA
*
82056971 CATTCAAATCTGCACACATAGTAC
1 CATTCAAATCCGCACACATAGTAC
* *
82056995 CATTTAATTCCGCACACATAGT
1 CATTCAAATCCGCACACATAGT
82057017 GCCAATGTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.28, G:0.09, T:0.28
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTAC
Found at i:82065755 original size:18 final size:18
Alignment explanation
Indices: 82065724--82065758 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
82065714 TATATATAAT
82065724 CATTTTACATATTTACAA
1 CATTTTACATATTTACAA
82065742 CATTTATACA-ATTTACA
1 CATTT-TACATATTTACA
82065759 TAAACACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (18 bp):
CATTTTACATATTTACAA
Found at i:82066582 original size:148 final size:148
Alignment explanation
Indices: 82066314--82066612 Score: 571
Period size: 148 Copynumber: 2.0 Consensus size: 148
82066304 ACTATCCCAA
82066314 TTTCAAAAATATAAAACTTACTAAAAACAGGGCTTGGTTACTTACTCAAATAAGCTTGATAAGTC
1 TTTCAAAAATATAAAACTTACTAAAAACAGGGCTTGGTTACTTACTCAAATAAGCTTGATAAGTC
*
82066379 TTCTTCCTCTCTCCTAGGGTTTCCATGGAAATATTTGGGAAAGTTGATATGAAAGTTTTTTCTTT
66 TTCTTCCTCTCTCCTAGGGTTTCCATGGAAATATTTGGGAAAGTTGATAGGAAAGTTTTTTCTTT
82066444 TTCATTTAATTAACTTTT
131 TTCATTTAATTAACTTTT
* *
82066462 TTTCAAAAATATAAAACTTACTAAAAACGGGGCTTGGTTACTTACTCAAATAAGCTTGGTAAGTC
1 TTTCAAAAATATAAAACTTACTAAAAACAGGGCTTGGTTACTTACTCAAATAAGCTTGATAAGTC
82066527 TTCTTCCTCTCTCCTAGGGTTTCCATGGAAATATTTGGGAAAGTTGATAGGAAAGTTTTTTCTTT
66 TTCTTCCTCTCTCCTAGGGTTTCCATGGAAATATTTGGGAAAGTTGATAGGAAAGTTTTTTCTTT
82066592 TTCATTTAATTAACTTTT
131 TTCATTTAATTAACTTTT
82066610 TTT
1 TTT
82066613 ATTTTTCCAT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (148 bp):
TTTCAAAAATATAAAACTTACTAAAAACAGGGCTTGGTTACTTACTCAAATAAGCTTGATAAGTC
TTCTTCCTCTCTCCTAGGGTTTCCATGGAAATATTTGGGAAAGTTGATAGGAAAGTTTTTTCTTT
TTCATTTAATTAACTTTT
Found at i:82069066 original size:50 final size:50
Alignment explanation
Indices: 82068991--82069329 Score: 415
Period size: 50 Copynumber: 6.9 Consensus size: 50
82068981 TGATGCTAGG
*
82068991 GAGATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
82069041 GAGATATGAGAGATAGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
82069091 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
82069141 GAGATATGAGAGCTAGTGGAAGACCATGTTTGGGACATGGCATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
82069189 -TGATATGTG-TC-AGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * * *
82069236 GATAGATGAGAGGTAGTTTAAGACCATGTCTAGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
82069286 GATAAATGAGAG-TCAGTGTCAA-ACCATGTCTGGGACATGGCATC
1 GAGATATGAGAGCT-AGTGT-AAGACCATGTCTGGGACATGGCATC
82069330 ACTTTGATGT
Statistics
Matches: 254, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
45 28 0.11
46 1 0.00
47 8 0.03
48 5 0.02
49 4 0.02
50 206 0.81
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:82069260 original size:145 final size:145
Alignment explanation
Indices: 82068991--82069374 Score: 429
Period size: 145 Copynumber: 2.6 Consensus size: 145
82068981 TGATGCTAGG
* * *
82068991 GAGATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGAT-
1 GAGATATGAGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGG-CT--TGATAT--GAG-TC
*
82069055 AGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAGATATGAGAGCTAGTGTAAGACCATGT
60 AGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAGAGATGAGAGCTAGTGTAAGACCATGT
* * *
82069120 TTGGGACATGGCATCGGCCTC
125 CTAGGACATGGCATCAGCCTC
* * *
82069141 GAGATATGAGAGCTAGTGGAAGACCATGTTTGGGACATGGCATCGGCTTGATATGTGTCAGTGTA
1 GAGATATGAGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCTTGATATGAGTCAGTGTA
* * *
82069206 AGACCATGTCTAGGACATGGCATC-AGCAC-CGATAGATGAGAGGTAGTTTAAGACCATGTCTAG
66 AGACCATGTCTAGGACATGGCATCGA-C-CTCGAGAGATGAGAGCTAGTGTAAGACCATGTCTAG
82069269 GACATGGCATCAGCCTC
129 GACATGGCATCAGCCTC
* * * * * *
82069286 GATAAATGAGAG-TCAGTGTCAA-ACCATGTCTGGGACATGGCATC-ACTTTGATGTGCGGCCAG
1 GAGATATGAGAGCT-AGTG-CAAGACCATGTCTGGGACATGGCATCGGC-TTGATATG-AGTCAG
**
82069348 TGTAAGACCATGTCCGGGACATGGCAT
62 TGTAAGACCATGTCTAGGACATGGCAT
82069375 TGGCACTGTA
Statistics
Matches: 205, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
144 4 0.02
145 119 0.58
146 32 0.16
147 5 0.02
149 2 0.01
150 43 0.21
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (145 bp):
GAGATATGAGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCTTGATATGAGTCAGTGTA
AGACCATGTCTAGGACATGGCATCGACCTCGAGAGATGAGAGCTAGTGTAAGACCATGTCTAGGA
CATGGCATCAGCCTC
Found at i:82069330 original size:50 final size:50
Alignment explanation
Indices: 82068991--82069374 Score: 370
Period size: 50 Copynumber: 7.9 Consensus size: 50
82068981 TGATGCTAGG
* *
82068991 GAGATATGAAAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGTC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
*
82069041 GAGATATGAGAGAT-AGTGTAAGACCATGTCTAGGACATGGCATC-GACCTC
1 GAGATATGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTC
* *
82069091 GAGATATGAGAG-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGTC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * *
82069141 GAGATATGAGAG-CTAGTGGAAGACCATGTTTGGGACATGGCATC-GGCT-
1 GAGATATGAGAGTC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * *
82069189 -TGATAT--GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-C
1 GAGATATGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTC
* * * *
82069236 GATAGATGAGAGGT-AGTTTAAGACCATGTCTAGGACATGGCATCAGCCTC
1 GAGATATGAGA-GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* *
82069286 GATAAATGAGAGTCAGTGTCAA-ACCATGTCTGGGACATGGCATCA--CT-
1 GAGATATGAGAGTCAGTGT-AAGACCATGTCTGGGACATGGCATCAGCCTC
** * * * *
82069333 TTGATGTGCG-GCCAGTGTAAGACCATGTCCGGGACATGGCAT
1 GAGATATGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCAT
82069375 TGGCACTGTA
Statistics
Matches: 288, Mismatches: 28, Indels: 40
0.81 0.08 0.11
Matches are distributed among these distances:
45 31 0.11
46 29 0.10
47 10 0.03
48 5 0.02
49 7 0.02
50 201 0.70
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
Found at i:82069719 original size:66 final size:66
Alignment explanation
Indices: 82069637--82069771 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
82069627 CGATAAAGGC
82069637 AAGCGTACTTGTCAAACAGTATTATAGCTTTAGGAAGACTAGATTGTTGAATCCCAAAGAAACTA
1 AAGCGTACTTGTCAAACAGTATTATAGCTTTAGGAAGACTAGATTGTTGAATCCCAAAGAAACTA
82069702 A
66 A
82069703 AAGCGTACTTGTCAAACAGTATTATAGCTTTAGGAAGACTAGATTGTTGAATCCCAAAGAAACTA
1 AAGCGTACTTGTCAAACAGTATTATAGCTTTAGGAAGACTAGATTGTTGAATCCCAAAGAAACTA
82069768 A
66 A
82069769 AAG
1 AAG
82069772 TACTAGTATT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (66 bp):
AAGCGTACTTGTCAAACAGTATTATAGCTTTAGGAAGACTAGATTGTTGAATCCCAAAGAAACTA
A
Found at i:82071812 original size:15 final size:15
Alignment explanation
Indices: 82071792--82071828 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
82071782 GAAGAGGTTA
82071792 TCGTGGTGGTCTAT-G
1 TCGTGGTGG-CTATGG
82071807 TCGTGGTGGCTATGG
1 TCGTGGTGGCTATGG
82071822 TCGTGGT
1 TCGTGGT
82071829 TGAGCAGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.05, C:0.14, G:0.43, T:0.38
Consensus pattern (15 bp):
TCGTGGTGGCTATGG
Found at i:82079486 original size:24 final size:25
Alignment explanation
Indices: 82079436--82079492 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
82079426 TAAAGGAGAA
* *
82079436 AAGAGAAAGAAAATGGGAGAGAAAGG
1 AAGA-AAAGAAAATGAGAAAGAAAGG
*
82079462 AAGAAAAGAAAAT-AGAAAGACAGG
1 AAGAAAAGAAAATGAGAAAGAAAGG
82079486 -AGAAAAG
1 AAGAAAAG
82079493 GGAAAGAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.25
24 8 0.29
25 9 0.32
26 4 0.14
ACGTcount: A:0.63, C:0.02, G:0.32, T:0.04
Consensus pattern (25 bp):
AAGAAAAGAAAATGAGAAAGAAAGG
Found at i:82080193 original size:15 final size:15
Alignment explanation
Indices: 82080173--82080209 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
82080163 GGACACGCCC
82080173 GTGTCTCGTAACCGT
1 GTGTCTCGTAACCGT
82080188 GTGTCTCGTAACCGT
1 GTGTCTCGTAACCGT
82080203 GTGTCTC
1 GTGTCTC
82080210 ACACGGTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.27, T:0.35
Consensus pattern (15 bp):
GTGTCTCGTAACCGT
Found at i:82087704 original size:878 final size:878
Alignment explanation
Indices: 82085996--82087754 Score: 2928
Period size: 878 Copynumber: 2.0 Consensus size: 878
82085986 GCAACGGCAT
**
82085996 CAAAAACTTGATGGTTGTGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
1 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
** *
82086061 TAGTATTGTTATGGTGAGGCCGAAATATTGTATCCACGAGGACTAAAAGTACTAGTAGTTACTCT
66 TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGTACTAGTAGTTACTCT
82086126 CTTTTCATTATCTAGCCTAAGAATTTAAGAGTGTTTTCAAACTAAACTAATTTTTGAATTTATCT
131 CTTTTCATTATCTAGCCTAAGAATTTAAGAGTGTTTTCAAACTAAACTAATTTTTGAATTTATCT
*
82086191 ATGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACCC
196 AAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACCC
*
82086256 AAGAAAGAATCCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCAATTGACTTAT
261 AAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCAATTGACTTAT
82086321 TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAAACTAAGAACAACTGACTCTAGGTTC
326 TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAAACTAAGAACAACTGACTCTAGGTTC
* *
82086386 ATTAATTGAAATCCCTTTCTAATTAAAACCCCTATTGTCATATTAACTCAATCTATAGATTCCCT
391 ATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCCCT
* *
82086451 TACTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGGATTGCATTCAACTTCG
456 TACTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCCG
*
82086516 TGTAATTATGAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCACAAAC
521 TGTAATTATGAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAAAC
* *
82086581 CTGGATTAATATCCTGAAATTTTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
586 CTGGATTAATATCCTAAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
* ** * *
82086646 TTTATCATATACGTCAAAGCATAATAAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGG
651 TTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAGGG
*
82086711 AGTTTAGATCATAATAATAATGGAAAACATCACAAAGTATATAAAACAACAAAACATAAAGAAAC
716 AGTTTAGATCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAAAC
* * *
82086776 CCAAGAACTTCTAGGAAATTGGATGGAAATTTTCAATCTTGATGTAGATCCTGGCTCCGAGGTGA
781 CCAAGAACTTCTAGGAAATTGGATGGAAATCTTCAATCGTGATATAGATCCTGGCTCCGAGGTGA
* *
82086841 TTCCGATGGCTAGTCGCGAGTATTTTTTGCCTC
846 TTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
* *
82086874 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGTGCCCCTATCGAA-AA
1 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
* *
82086938 GTAGTATTGTTATGGTGAGAATGGAATATCGTATCCACGAGGACTAAAAGTACTAGTAGTTACTC
66 -TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGTACTAGTAGTTACTC
* * * *
82087003 TCTTTTTATTATCTAGCCTAAGAATTTAAGGGTGTTTTTAAACTAAACTAATTTTTTAATTTATC
130 TCTTTTCATTATCTAGCCTAAGAATTTAAGAGTGTTTTCAAACTAAACTAATTTTTGAATTTATC
* *
82087068 TAAGATCACGATAGAGGCGATAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACC
195 TAAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACC
* *
82087133 CAAGAAAGAAACCACCTAGACTTCACTTATTGCCTTTGACTTAGACGATTTATTCACTTGACTTA
260 CAAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCAATTGACTTA
* *
82087198 TTCCGTAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGACTCTAGGTT
325 TTCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAAACTAAGAACAACTGACTCTAGGTT
* * * *
82087263 GATTCATTGAAATCTCTTTCTAAGTAAAACCCCTATTGTTACATTAACTCAATCTATAGATTCCC
390 CATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCCC
*
82087328 TTATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCC
455 TTACTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCC
* * ** *
82087393 GCT-TAATTATGAATGATCTACTCTTAAACAGGGACTTTTGTTCCTTTGAATAAGTACATCAAAA
520 G-TGTAATTATGAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAA
*
82087457 ACCTGGATTAATATCCTAAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAAG
584 ACCTGGATTAATATCCTAAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAAC
*
82087522 TATTAATCATATAAATCAAAGCATAATAAGACTCGTCATAGGGTTCATCTCCCATAGGTATTTAG
649 TATTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAG
* * * * * *
82087587 GGAGTTTAGTTCATCATAATAGTGGAAAACATCTCAAAGTTTAGAAAGCAACAAAACATAAAGAA
714 GGAGTTTAGATCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAA
* **
82087652 ACCCAAGAACTTCTAGGAAATTGGATGGAAATCTTCAGTCGTGATATAGATCCTGGCTTTGAGGT
779 ACCCAAGAACTTCTAGGAAATTGGATGGAAATCTTCAATCGTGATATAGATCCTGGCTCCGAGGT
* *
82087717 GATTCCAATGGCTAGTCGTGTGTATTTTCTGCCTC
844 GATTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
82087752 CAA
1 CAA
82087755 CTCTGTGTGT
Statistics
Matches: 817, Mismatches: 62, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
877 2 0.00
878 814 1.00
879 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (878 bp):
CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGTACTAGTAGTTACTCT
CTTTTCATTATCTAGCCTAAGAATTTAAGAGTGTTTTCAAACTAAACTAATTTTTGAATTTATCT
AAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACCC
AAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCAATTGACTTAT
TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAAACTAAGAACAACTGACTCTAGGTTC
ATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCCCT
TACTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCCG
TGTAATTATGAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAAAC
CTGGATTAATATCCTAAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
TTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAGGG
AGTTTAGATCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAAAC
CCAAGAACTTCTAGGAAATTGGATGGAAATCTTCAATCGTGATATAGATCCTGGCTCCGAGGTGA
TTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
Found at i:82087996 original size:30 final size:30
Alignment explanation
Indices: 82087944--82088001 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
82087934 CATGGCCATG
* * *
82087944 ACACACGGGCTTGTGGTCTACCCGTGTGTC
1 ACACACGGACGTGTGGTCTACCCATGTGTC
82087974 ACACACGGACGTGTGGAT-TACCCATGTG
1 ACACACGGACGTGTGG-TCTACCCATGTG
82088002 GAACTACCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (30 bp):
ACACACGGACGTGTGGTCTACCCATGTGTC
Found at i:82092148 original size:26 final size:26
Alignment explanation
Indices: 82092118--82092174 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
82092108 AGCTAGCGCT
*
82092118 GATGCCTTGGAATGGCTGGGGTCATA
1 GATGCCTTGGAACGGCTGGGGTCATA
82092144 GATGCCTTGGAACGGCTGGGGTCATA
1 GATGCCTTGGAACGGCTGGGGTCATA
82092170 GATGC
1 GATGC
82092175 TTGTAGTAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.19, C:0.18, G:0.39, T:0.25
Consensus pattern (26 bp):
GATGCCTTGGAACGGCTGGGGTCATA
Found at i:82092853 original size:20 final size:21
Alignment explanation
Indices: 82092818--82092857 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
82092808 AAAAGAAGAG
82092818 GGGAGAAAAGAGGAAGAAAAT
1 GGGAGAAAAGAGGAAGAAAAT
*
82092839 GGGAGAGAA-AGGAAGAAAA
1 GGGAGAAAAGAGGAAGAAAA
82092858 GAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03
Consensus pattern (21 bp):
GGGAGAAAAGAGGAAGAAAAT
Found at i:82094595 original size:45 final size:44
Alignment explanation
Indices: 82094492--82094652 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 44
82094482 TGAAACAAGA
* * * * *
82094492 AAGATCATAGTTGAAAAACACTATGGCATTAAA-CC-AGAATAAAT
1 AAGACCATAGTTG-AAAATACTATGGCACTAAATCCGA-AATGAAC
* * **
82094536 AAGACCATAGTTGAAATATATTATGGCACTATATTGGAAATGAAC
1 AAGACCATAGTTGAAA-ATACTATGGCACTAAATCCGAAATGAAC
** * *
82094581 AAGACCATAGTTGAAAGATACTATGATATTAAATCCGAAATGAAT
1 AAGACCATAGTTGAAA-ATACTATGGCACTAAATCCGAAATGAAC
82094626 AAGACCATAGTTGACAAATACTATGGC
1 AAGACCATAGTTGA-AAATACTATGGC
82094653 GATACATCGG
Statistics
Matches: 93, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
43 3 0.03
44 24 0.26
45 63 0.68
46 3 0.03
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (44 bp):
AAGACCATAGTTGAAAATACTATGGCACTAAATCCGAAATGAAC
Found at i:82097582 original size:40 final size:39
Alignment explanation
Indices: 82097527--82097680 Score: 161
Period size: 40 Copynumber: 3.9 Consensus size: 39
82097517 GGATATAGCT
* *
82097527 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-AGTA
*
82097567 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAA-TA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG--TTAAGTA
* * *
82097607 ACTCGCACAAATGCCTTCAGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA--AGTA
* * *
82097646 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
82097681 TCATCCAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
36 1 0.01
38 1 0.01
39 28 0.29
40 60 0.63
41 2 0.02
42 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAAGTA
Found at i:82099884 original size:46 final size:46
Alignment explanation
Indices: 82099832--82100049 Score: 276
Period size: 46 Copynumber: 4.7 Consensus size: 46
82099822 ACACATAGTG
* * * * *
82099832 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCGTGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** * * *
82099878 TCTTTCAACCATGGTCTTGTTCATTTCATATCATGTTGTCATGGCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
82099924 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * * * *
82099970 TCTTTTAGCCATGGTCTTACACATTTCATATTAGGCTGCTATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
82100016 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
82100050 AGAGCACACT
Statistics
Matches: 150, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 4 0.03
46 146 0.97
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:82102139 original size:3 final size:3
Alignment explanation
Indices: 82102125--82102173 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
82102115 TTTTATACTA
*
82102125 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
82102168 AA- AAT A
1 AAT AAT A
82102174 TCTCATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:82102147 original size:11 final size:11
Alignment explanation
Indices: 82102131--82102169 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
82102121 ACTAAATAAT
82102131 TAATAATAAAA
1 TAATAATAAAA
*
82102142 TAATAATGAAA
1 TAATAATAAAA
82102153 TAATAATAAAA
1 TAATAATAAAA
82102164 TAATAA
1 TAATAA
82102170 AATATCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:82102156 original size:19 final size:19
Alignment explanation
Indices: 82102132--82102173 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
82102122 CTAAATAATT
*
82102132 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
82102151 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
82102170 AATA
1 AATA
82102174 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:82102196 original size:20 final size:21
Alignment explanation
Indices: 82102143--82102218 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 21
82102133 ATAATAAAAT
* *
82102143 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
82102162 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
82102183 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
82102204 TAATCATAAAATATC
1 -AATAATAAAATATC
82102219 ATCAACATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.24
20 12 0.27
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:82103841 original size:25 final size:25
Alignment explanation
Indices: 82103803--82103900 Score: 169
Period size: 25 Copynumber: 3.9 Consensus size: 25
82103793 GAATGTGCTG
* *
82103803 AATGTGCTAATAATCAGAGAGTACT
1 AATGTGCTAGTAATCAGAGAGCACT
*
82103828 AATGTGCTAGTAATTAGAGAGCACT
1 AATGTGCTAGTAATCAGAGAGCACT
82103853 AATGTGCTAGTAATCAGAGAGCACT
1 AATGTGCTAGTAATCAGAGAGCACT
82103878 AATGTGCTAGTAATCAGAGAGCA
1 AATGTGCTAGTAATCAGAGAGCA
82103901 TTCTGAGTTC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (25 bp):
AATGTGCTAGTAATCAGAGAGCACT
Found at i:82105214 original size:46 final size:46
Alignment explanation
Indices: 82105144--82105371 Score: 296
Period size: 46 Copynumber: 5.0 Consensus size: 46
82105134 TTTGACATGA
* * * * *
82105144 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
82105190 TGCCATGGTATCTTTCAAGCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
82105236 TGTCATGGCATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * * *
82105282 TGTCATGGTATCTTTCAACCATGCTATTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82105328 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
82105372 AGAGCACACT
Statistics
Matches: 159, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 4 0.03
46 155 0.97
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:82107468 original size:11 final size:11
Alignment explanation
Indices: 82107452--82107479 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
82107442 ACTAAATAAT
82107452 TAATAATAAAA
1 TAATAATAAAA
82107463 TAATAATAAAA
1 TAATAATAAAA
82107474 TAATAA
1 TAATAA
82107480 ATATCTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:82107494 original size:20 final size:20
Alignment explanation
Indices: 82107469--82107516 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
82107459 AAAATAATAA
*
82107469 TAAAATAATAAATATCTCAT
1 TAAAATAATAAATATCTAAT
*
82107489 TAAAATAATATATATCTAAT
1 TAAAATAATAAATATCTAAT
82107509 T-AAATAAT
1 TAAAATAAT
82107517 CATAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATAAATATCTAAT
Found at i:82111952 original size:25 final size:25
Alignment explanation
Indices: 82111914--82111986 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
82111904 AAATGAATCG
* *
82111914 CCACAAAGGATTTAAAGGTGACTCA
1 CCACAAAGGCTTTACAGGTGACTCA
* * *
82111939 CCACAAAGGCTTTACATGTGATTCG
1 CCACAAAGGCTTTACAGGTGACTCA
* *
82111964 CCAAAAAAGCTTTACAGGTGACT
1 CCACAAAGGCTTTACAGGTGACT
82111987 TGCTACAAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (25 bp):
CCACAAAGGCTTTACAGGTGACTCA
Found at i:82116171 original size:19 final size:19
Alignment explanation
Indices: 82116144--82116181 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
82116134 CTCAACTTCT
82116144 GTCGAAGAAATAACATGTG
1 GTCGAAGAAATAACATGTG
*
82116163 GTCGGAGAAATAACATGTG
1 GTCGAAGAAATAACATGTG
82116182 AAGGATCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (19 bp):
GTCGAAGAAATAACATGTG
Found at i:82119019 original size:5 final size:5
Alignment explanation
Indices: 82119005--82119036 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
82118995 GGATTTAGTT
82119005 TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC T
82119037 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:82130346 original size:48 final size:48
Alignment explanation
Indices: 82130272--82130452 Score: 274
Period size: 48 Copynumber: 3.8 Consensus size: 48
82130262 TCTCATATCG
* *
82130272 ATGCCATGTCCCAAACATTGTCTTACATGAGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * *
82130320 ATGCCATGTCCCAGACATGGTTTTACATGTGATCACATATCGATGCCT
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* *
82130368 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
*
82130416 ACGCCATGTCCCAGACATGGTCTTACAT-AGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GATCACA
82130453 ATGCCATAGC
Statistics
Matches: 121, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
48 121 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
Found at i:82130473 original size:37 final size:37
Alignment explanation
Indices: 82130432--82130514 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
82130422 TGTCCCAGAC
*
82130432 ATGGTCTTACATAG-GATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACAT-GTCATCACAATGCCATAGCCCAGCT
*
82130469 ATGGTCTTACATGTCATTACAATGCCATAGCCCAGCT
1 ATGGTCTTACATGTCATCACAATGCCATAGCCCAGCT
82130506 ATGGTCTTA
1 ATGGTCTTA
82130515 GACGTACTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGTCATCACAATGCCATAGCCCAGCT
Found at i:82132715 original size:62 final size:61
Alignment explanation
Indices: 82132612--82132810 Score: 314
Period size: 60 Copynumber: 3.3 Consensus size: 61
82132602 AAATGATGAT
*
82132612 GAAAAA-AGGAAAAGAAAGAAA-AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAAGAAGAAAA-AAA-AAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
* *
82132673 GAAAAAGAAGAAAAAAAAAAAGAGAAAAAGCTCTTATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAAGAAG-AAAAAAAAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
82132735 GAAAAAGAAG-AAAAAAAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAAGAAGAAAAAAAAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
*
82132795 GAAAAAGAAGGAAAAA
1 GAAAAAGAAGAAAAAA
82132811 GAGCTTTGAG
Statistics
Matches: 129, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
60 58 0.45
61 14 0.11
62 53 0.41
63 4 0.03
ACGTcount: A:0.55, C:0.09, G:0.21, T:0.16
Consensus pattern (61 bp):
GAAAAAGAAGAAAAAAAAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
Found at i:82132745 original size:13 final size:13
Alignment explanation
Indices: 82132727--82132761 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
82132717 TTGGCCGAAT
*
82132727 AGAAGAAAGAAAA
1 AGAAGAAAAAAAA
82132740 AGAAGAAAAAAAA
1 AGAAGAAAAAAAA
82132753 AGAA-AAAAA
1 AGAAGAAAAA
82132762 GCTCTCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAAAA
Found at i:82134269 original size:120 final size:120
Alignment explanation
Indices: 82134056--82134277 Score: 324
Period size: 120 Copynumber: 1.9 Consensus size: 120
82134046 GGATGATAAT
* * * *
82134056 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCGAAGTCCCGAAGGCATTGGT
82134121 GCGAGTTATTACATCCAGGCTAATTCCCGAAGGCATTTGTGCGAGTTATTGCATC
66 GCGAGTTATTACATCCAGGCTAATTCCCGAAGGCATTTGTGCGAGTTATTGCATC
*
82134176 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCGAAGTCCCGAAGGCATTG
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCGAAGTCCCGAAGGCATTG
* * *
82134239 GTGTGAGTTATTATATCCGGGCT-ATGTCCCGAAGGCATT
64 GTGCGAGTTATTACATCCAGGCTAAT-TCCCGAAGGCATT
82134278 GAGTGAGTAG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
119 3 0.03
120 87 0.96
121 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCGAAGTCCCGAAGGCATTGGT
GCGAGTTATTACATCCAGGCTAATTCCCGAAGGCATTTGTGCGAGTTATTGCATC
Found at i:82134278 original size:40 final size:40
Alignment explanation
Indices: 82134056--82134277 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
82134046 GGATGATAAT
* * * * **
82134056 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
*
82134096 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
* * *
82134136 CAGGCTAATTCCCGAAGGCATTTGTGCGAGTTATTGCATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
* * *
82134176 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
* * * *
82134216 CGGGCGAAGTCCCGAAGGCATTGGTGTGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
*
82134256 CGGGCTATGTCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
82134278 GAGTGAGTAG
Statistics
Matches: 158, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
Found at i:82134295 original size:39 final size:39
Alignment explanation
Indices: 82134056--82134311 Score: 207
Period size: 40 Copynumber: 6.5 Consensus size: 39
82134046 GGATGATAAT
*
82134056 CGGGCTAAGTCCCGAAGGCATT-TGCGCTAG-TGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTGTGTG--AGCT-ACTA-TATC
* * * * *
82134096 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCA-TTGTGTGAGCTACTATATC
* * * * * **
82134136 CAGGCTAATTCCCGAAGGCATTTGTGCGAGTTATTGCATC
1 CGGGCTAAGTCCCGAAGGCA-TTGTGTGAGCTACTATATC
*
82134176 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCA-TTGTGTGAGCTACTATATC
* * *
82134216 CGGGCGAAGTCCCGAAGGCATTGGTGTGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATT-GTGTGAGCTACTATATC
* *
82134256 CGGGCTATGTCCCGAAGGCATTGAGTGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTGTGTGAGCTA-CTATATC
* *
82134295 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
82134312 TACTTGGCTT
Statistics
Matches: 186, Mismatches: 24, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 149 0.80
41 3 0.02
42 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTGTGTGAGCTACTATATC
Found at i:82140893 original size:13 final size:13
Alignment explanation
Indices: 82140875--82140909 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
82140865 TTGGCCGAAT
*
82140875 AGAAGAAAGAAAA
1 AGAAGAAAAAAAA
82140888 AGAAGAAAAAAAA
1 AGAAGAAAAAAAA
82140901 AGAA-AAAAA
1 AGAAGAAAAA
82140910 GCTCTCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAAAA
Found at i:82140916 original size:60 final size:60
Alignment explanation
Indices: 82140843--82141018 Score: 334
Period size: 60 Copynumber: 2.9 Consensus size: 60
82140833 AAAGAAAGAA
82140843 AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAAAAAG
1 AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAAAAAG
*
82140903 AAAAAAAGCTCTCATGTTGTTTTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAAAAAG
1 AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAAAAAG
*
82140963 AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGGAAAAA
1 AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAA
82141019 GAGCTTTGAG
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 113 1.00
ACGTcount: A:0.52, C:0.10, G:0.20, T:0.18
Consensus pattern (60 bp):
AAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAGAAGAAAAAAAAAG
Found at i:82140953 original size:13 final size:13
Alignment explanation
Indices: 82140935--82140969 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
82140925 TTGGCCGAAT
*
82140935 AGAAGAAAGAAAA
1 AGAAGAAAAAAAA
82140948 AGAAGAAAAAAAA
1 AGAAGAAAAAAAA
82140961 AGAA-AAAAA
1 AGAAGAAAAA
82140970 GCTCTCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAAAA
Found at i:82142314 original size:40 final size:40
Alignment explanation
Indices: 82142259--82142435 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
82142249 CGGATGATAA
*
82142259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
82142299 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
*
82142339 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* * * *
82142379 TCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATAT
* *
82142418 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82142436 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.12
39 13 0.11
40 93 0.77
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:82142392 original size:80 final size:79
Alignment explanation
Indices: 82142259--82142435 Score: 259
Period size: 80 Copynumber: 2.2 Consensus size: 79
82142249 CGGATGATAA
*
82142259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCA-TTG
*
82142324 TGCGAGCTA-CTATAT
65 AGCGAG-TAGCTATAT
* * *
82142339 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATATTCGGGCTATGTCCCGAAGGCATTGA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTGA
82142404 GCGAGTAGCTATAT
66 GCGAGTAGCTATAT
* *
82142418 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82142436 TACTTGGCTT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
78 16 0.18
79 16 0.18
80 57 0.64
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTGA
GCGAGTAGCTATAT
Found at i:82146595 original size:43 final size:42
Alignment explanation
Indices: 82146471--82146625 Score: 197
Period size: 43 Copynumber: 3.7 Consensus size: 42
82146461 ACTAAAATTA
* *
82146471 CGTGTAAGATCATATCTGGGATATGGCATC-ATATGAGATTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
*
82146512 CGTGTAAGGCCATATCTAGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
* * *
82146554 TGTGTAAGACCATAGT-TAGGTTATTGGCATCGATATGAGATTA
1 CGTGTAAGACCATA-TCTAGGATA-TGGCATCGATATGAGATTT
* * *
82146597 CATGTAAGACCATATCTGGGATATAGCAT
1 CGTGTAAGACCATATCTAGGATATGGCAT
82146626 TAGTATGGTA
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 27 0.28
42 35 0.36
43 36 0.37
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
Found at i:82154229 original size:54 final size:54
Alignment explanation
Indices: 82154033--82154439 Score: 318
Period size: 55 Copynumber: 7.7 Consensus size: 54
82154023 TTTCCTTTTT
* * * ** *
82154033 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * * * *
82154086 GAACTCACCAATGCCATGTCTTGCCGTGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * *
82154140 GTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * *
82154195 GAATTTATCAATGCCATGCCTTGGCATGGTCTTACAT-G-A--TAT-CCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
** * *
82154243 ---CTT-TCCAAATGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTAT-
1 GAACTTAT-C-AATGCCATG--CCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * * * * *
82154295 GAACTCATTAATGCCATGCCTTGGCATGATATTACATGGGACCTTTTCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * *
82154349 GTAACTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
*
82154404 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACA
82154440 GATATACTTA
Statistics
Matches: 276, Mismatches: 60, Indels: 35
0.74 0.16 0.09
Matches are distributed among these distances:
44 1 0.00
45 3 0.01
46 9 0.03
47 13 0.05
48 3 0.01
49 7 0.03
50 2 0.01
51 1 0.00
52 7 0.03
53 66 0.24
54 74 0.27
55 89 0.32
56 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
Found at i:82154416 original size:209 final size:208
Alignment explanation
Indices: 82154056--82154501 Score: 694
Period size: 209 Copynumber: 2.1 Consensus size: 208
82154046 CCATGTCTTG
** * * * * *
82154056 ACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTGCCGTGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGACTTATGAACTCACCAATGCCATGCCTTGCCATGATATTAC
* * *
82154121 ATGGGACCTTTGCCTTATAGTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCTT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCT
* * *
82154186 TGCCTTATAGAATTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTTCCAA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACA-GATATACTTATCTTACCAA
*
82154251 ATGCCATGTTCCAA
195 ATGACATGTTCCAA
* ** *
82154265 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCATTAATGCCATGCCTTGGCATGATATTAC
1 ACATGGTCTTACATGGTATCCTTGACTTATGAACTCACCAATGCCATGCCTTGCCATGATATTAC
* *
82154330 ATGGGACCTTTTCCTTATAGTAACTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCT
82154395 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
82154460 TGACATGTTCCAA
196 TGACATGTTCCAA
*
82154473 ACATGGTCTTACATGGTATCTTTGACTTA
1 ACATGGTCTTACATGGTATCCTTGACTTA
82154502 GTGCCAATGC
Statistics
Matches: 216, Mismatches: 21, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
208 57 0.26
209 159 0.74
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (208 bp):
ACATGGTCTTACATGGTATCCTTGACTTATGAACTCACCAATGCCATGCCTTGCCATGATATTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCT
TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
TGACATGTTCCAA
Found at i:82156677 original size:4 final size:4
Alignment explanation
Indices: 82156668--82156699 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
82156658 GTATACTTCA
82156668 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
82156700 GAATGTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:82158821 original size:2 final size:2
Alignment explanation
Indices: 82158814--82158849 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
82158804 TTTATTTGTT
82158814 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82158850 TTTTTTCTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:82161359 original size:65 final size:65
Alignment explanation
Indices: 82161255--82161377 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
82161245 ACCCCCAATA
82161255 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
1 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
* * *
82161320 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAATAGGTAATTTTTTGAT
1 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGAT
82161378 CATTTTTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.36
Consensus pattern (65 bp):
GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
Found at i:82162267 original size:16 final size:16
Alignment explanation
Indices: 82162246--82162316 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
82162236 TGAATTACTT
82162246 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
82162262 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
82162278 AATACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* * *
82162294 ATTACATCCCTATTCC
1 ATTACAGCTCTATTCA
82162310 ATTACAG
1 ATTACAG
82162317 TGAACCAAAC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:82169359 original size:2 final size:2
Alignment explanation
Indices: 82169352--82169384 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82169342 TAAGGTAAAT
82169352 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82169385 TAGTTTTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82172280 original size:44 final size:44
Alignment explanation
Indices: 82172192--82172281 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
82172182 GGTGAAATAA
* ** * * **
82172192 AATAGAAGTTGTGATTGTTATACCTTTAAAAATAATTATCATTT
1 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
82172236 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
1 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
82172280 AA
1 AA
82172282 ATTACATCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.39
Consensus pattern (44 bp):
AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
Found at i:82172281 original size:17 final size:18
Alignment explanation
Indices: 82172248--82172282 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82172238 TAGAAGTTGT
82172248 AATAATTACACATTTAAA
1 AATAATTACACATTTAAA
*
82172266 AATAATTAGA-ATTTAAA
1 AATAATTACACATTTAAA
82172283 TTACATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (18 bp):
AATAATTACACATTTAAA
Found at i:82173007 original size:12 final size:13
Alignment explanation
Indices: 82172990--82173019 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
82172980 GTTATAAATG
82172990 TTTTAATTA-TTA
1 TTTTAATTATTTA
82173002 TTTTAATTATTTA
1 TTTTAATTATTTA
82173015 TTTTA
1 TTTTA
82173020 GTATATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTATTTA
Found at i:82175257 original size:27 final size:28
Alignment explanation
Indices: 82175180--82175248 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
82175170 GCGTAGATCA
*
82175180 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
82175208 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
82175236 CGATA-TACCCCTA
1 CGAAATTACCCCTA
82175249 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:82179366 original size:80 final size:80
Alignment explanation
Indices: 82179282--82179430 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82179272 TATGGTAACC
* * * *
82179282 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82179346 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82179362 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82179427 CCGG
66 CCGG
82179431 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82179372 original size:40 final size:38
Alignment explanation
Indices: 82179323--82179430 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82179313 ATCACGATTT
*
82179323 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82179363 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82179403 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82179431 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82182718 original size:40 final size:40
Alignment explanation
Indices: 82182661--82182846 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
82182651 TCGAATGATG
* * * *
82182661 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
82182701 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
82182741 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82182781 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
82182822 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
82182847 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82182860 original size:40 final size:40
Alignment explanation
Indices: 82182714--82182865 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
82182704 GGACTAAGAT
** *
82182714 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
82182754 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
82182794 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
82182834 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
82182866 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:82182864 original size:80 final size:81
Alignment explanation
Indices: 82182695--82182865 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 81
82182685 GTGCTAAGTG
*
82182695 ACTATATCC-GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAA
1 ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
**
82182759 GGCATTTGTGCGAGTT
66 GGCATTTGAACGAGTT
* * *
82182775 ACTAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCC
1 ACTATATCCGGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CC
*
82182836 GAAGGTATTTGAACGAG-T
63 GAAGGCATTTGAACGAGTT
82182854 AGCTATATCCGG
1 A-CTATATCCGG
82182866 TTAAACTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
79 4 0.05
80 69 0.88
81 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (81 bp):
ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
GGCATTTGAACGAGTT
Found at i:82189267 original size:29 final size:27
Alignment explanation
Indices: 82189233--82189335 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
82189223 TACTCGATCA
*
82189233 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
82189262 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
82189291 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
82189320 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82189336 ATCTCGTCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:82197736 original size:40 final size:40
Alignment explanation
Indices: 82197646--82197830 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
82197636 TCAAATGATG
* *
82197646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
82197685 ATCTAGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
82197726 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82197765 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82197804 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82197831 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 33 0.28
40 75 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82197785 original size:79 final size:79
Alignment explanation
Indices: 82197699--82197863 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
82197689 AGACTAAGAT
* * *
82197699 CCGAAGGCATTTGTGTGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTCA-C
1 CCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGAACGAGT-AGC
*
82197761 TAAATCCGGGTTAAGTC
64 TAAATCC-GGTTAAATC
* *
82197778 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
* *
82197843 TATCCGGTTAAATT
66 AATCCGGTTAAATC
82197857 CCGAAGG
1 CCGAAGG
82197864 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 48 0.64
80 27 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:82205760 original size:40 final size:40
Alignment explanation
Indices: 82205676--82205860 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
82205666 TTCAATGATG
* *
82205676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
82205715 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
82205756 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82205795 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82205834 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82205861 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82205812 original size:79 final size:78
Alignment explanation
Indices: 82205676--82205893 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 78
82205666 TTCAATGATG
* **
82205676 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGT-ACTATATCCGGGTTAAG-TCCGAAGGCAT
82205739 TTGTGCGAGTTACTA-A
62 TTGTGCGAGTTACTATA
*
82205755 TTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGT-ACTATATCCGGGTTAAGT-CCGAAGGCATT
82205819 TGTGCGAGTTACTATA
63 TGTGCGAGTTACTATA
* * * * *
82205835 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTA-CTATATCCGGGTT-AAGTCCGAAGG
82205894 TACGTGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
77 2 0.02
78 2 0.02
79 75 0.62
80 41 0.34
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTACTATATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTATA
Found at i:82210612 original size:20 final size:20
Alignment explanation
Indices: 82210587--82210628 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
82210577 CTCCGATGAC
82210587 TCGTTTACTACAGAAAGATG
1 TCGTTTACTACAGAAAGATG
* *
82210607 TCGTTTGCTATAGAAAGATG
1 TCGTTTACTACAGAAAGATG
82210627 TC
1 TC
82210629 AGTAGAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (20 bp):
TCGTTTACTACAGAAAGATG
Found at i:82212653 original size:18 final size:18
Alignment explanation
Indices: 82212630--82212671 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
82212620 TGTGGGCAGG
82212630 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
82212648 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
82212666 CCGTGT
1 CCGTGT
82212672 CCCAACCTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.38, G:0.29, T:0.19
Consensus pattern (18 bp):
CCGTGTGGTCACACACGC
Found at i:82227783 original size:42 final size:42
Alignment explanation
Indices: 82227736--82227827 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
82227726 TGGCCCTTAG
* * ** *
82227736 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82227778 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82227820 GCCCATTT
1 GCCCATTT
82227828 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82227998 original size:24 final size:24
Alignment explanation
Indices: 82227962--82228045 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
82227952 CTAGAGGCCT
82227962 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
82227986 AGCCCTTTCTAATAAATTGGGGCAG
1 AGCCCTTT-TAATAAACTGGGGCAA
**
82228011 AGCCCTTTTCGGTAAACTGGGGCAGA
1 AGCCCTTTT-AATAAACTGGGGCA-A
82228037 A-CCCTTTTA
1 AGCCCTTTTA
82228046 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
23 4 0.08
24 9 0.18
25 35 0.71
26 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:82228874 original size:27 final size:27
Alignment explanation
Indices: 82228844--82228908 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
82228834 GGGCATATTC
*
82228844 ATCATTTTACCGTACAAGGG-TATTACG
1 ATCATTTTACCCTACAAGGGCT-TTACG
* *
82228871 ATCACTTTACCCTACAGGGGCTTTACG
1 ATCATTTTACCCTACAAGGGCTTTACG
* *
82228898 GTCTTTTTACC
1 ATCATTTTACC
82228909 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCCTACAAGGGCTTTACG
Found at i:82228992 original size:27 final size:27
Alignment explanation
Indices: 82228962--82229070 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
82228952 GTAAATCTAC
82228962 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
82228989 AAACCAATGGTATTCCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
82229015 AAAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
82229046 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
82229071 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 4 0.06
29 3 0.05
30 17 0.26
31 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:82229068 original size:57 final size:55
Alignment explanation
Indices: 82228966--82229122 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 55
82228956 ATCTACAAAC
* * *
82228966 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTCCT-ATAATTTTTAAAAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATT-TTGGTAATTTTT-AAAAA-T
* * * *
82229023 CAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTTAAAAAT
** * *
82229077 TGAGGGTATTTCGGTAATTTCT-CAAACCAGTGGTATTTTGGTAATT
1 CAAGGGTATTTCAGTAATTT-TGTAAACCAGTGGTATTTTGGTAATT
82229123 CTATCCTACA
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
54 37 0.44
55 6 0.07
56 5 0.06
57 36 0.43
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTTAAAAAT
Found at i:82229076 original size:27 final size:26
Alignment explanation
Indices: 82229026--82229122 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
82229016 AAAAAGTCAA
*
82229026 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTT-CAAATCAG
*
82229053 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTT-CAAATCAG
* *
82229079 AGGGTATTTCGGTAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TCAAATCAG
*
82229107 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
82229123 CTATCCTACA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.03
27 54 0.93
28 2 0.03
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATCAG
Found at i:82229173 original size:26 final size:25
Alignment explanation
Indices: 82229144--82229259 Score: 108
Period size: 27 Copynumber: 4.4 Consensus size: 25
82229134 GGGTATTTCA
*
82229144 GTAATTTCACAATCGAGGGTAAAATG
1 GTAATTTTA-AATCGAGGGTAAAATG
82229170 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAA-TTT-TAAATC-GAGGGTAAAATG
82229197 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAA-TTT-TAAATCGAGGGTAAAATG
* ***
82229224 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATT-T-TAAATCGAGGGTAAAATG
82229251 GTAATTTTA
1 GTAATTTTA
82229260 CAAGTTGAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
25 2 0.03
26 8 0.10
27 66 0.85
28 2 0.03
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.34
Consensus pattern (25 bp):
GTAATTTTAAATCGAGGGTAAAATG
Found at i:82229188 original size:27 final size:27
Alignment explanation
Indices: 82229154--82229245 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
82229144 GTAATTTCAC
82229154 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
82229181 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * *
82229208 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
82229235 AATCGAGGGTA
1 AATCGAGGGTA
82229246 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 1 0.02
27 58 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:82229270 original size:54 final size:53
Alignment explanation
Indices: 82229144--82229272 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
82229134 GGGTATTTCA
* * * *
82229144 GTAATTTCACAATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAATGATAATTCTATAAACTGAGGGTAAAATG
***
82229197 GTAATTTTGTA-AATCGAGGGTAAAATGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAATGATAATTCTATAAACT-GAGGGTAAAATG
*
82229251 GTAATTTTACAAGTTGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
82229273 TTTCAGTAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
52 2 0.03
53 10 0.16
54 50 0.79
55 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAATGATAATTCTATAAACTGAGGGTAAAATG
Found at i:82233021 original size:43 final size:43
Alignment explanation
Indices: 82232974--82233128 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
82232964 ATTGAGATGT
* *
82232974 GATTACATGTAAGACCATGTCTGGGACATTGGTATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGTATCGTAATGA
** * * *
82233017 GATTACGCGTAAGACGATGTCTGGGACATTGTTATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGTATCG-TAATGA
* * * * * *
82233060 GATTACGTGTAACACCTTGTCTGGGACAGTGGCATCG-ACATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGTATCGTA-ATGA
* *
82233103 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
82233129 GAAGGCATTG
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 83 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGTATCGTAATGA
Found at i:82241845 original size:18 final size:21
Alignment explanation
Indices: 82241824--82241865 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
82241814 TAATGCCTTC
82241824 TATGTTGGC-TTT-TT-TTGG
1 TATGTTGGCATTTATTGTTGG
82241842 TATGTTGGCATTTATTGTTGG
1 TATGTTGGCATTTATTGTTGG
82241863 TAT
1 TAT
82241866 AGTTTAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 2 0.10
21 7 0.33
ACGTcount: A:0.12, C:0.05, G:0.26, T:0.57
Consensus pattern (21 bp):
TATGTTGGCATTTATTGTTGG
Found at i:82246214 original size:43 final size:43
Alignment explanation
Indices: 82246132--82246277 Score: 118
Period size: 43 Copynumber: 3.4 Consensus size: 43
82246122 GTGATTACAT
* *
82246132 GTAAGACCATGTCTGGGACATTGGT-ATTGTATTGAGATTACGC
1 GTAAGACCATGTCTGGGACATT-GTCATCGTAATGAGATTACGC
* * *
82246175 GTAAGACGATGTCTGGGACATTGTCATCGTTAAT-CGATTACGT
1 GTAAGACCATGTCTGGGACATTGTCATCG-TAATGAGATTACGC
* * * * * * **
82246218 GTAACACCTTGTCTGGGACAGTGGCATCG-ACATGTGATAACAT
1 GTAAGACCATGTCTGGGACATTGTCATCGTA-ATGAGATTACGC
*
82246261 GTAAGACCATATCTGGG
1 GTAAGACCATGTCTGGG
82246278 GGATGGCATT
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 4 0.05
43 75 0.90
44 3 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGTCATCGTAATGAGATTACGC
Found at i:82250476 original size:19 final size:20
Alignment explanation
Indices: 82250452--82250496 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
82250442 ATATTAATTT
82250452 AATTAA-AACAAAAGCATGA
1 AATTAAGAACAAAAGCATGA
82250471 AATTAAGAACAAAAGCATGA
1 AATTAAGAACAAAAGCATGA
82250491 AATTAA
1 AATTAA
82250497 TTTAATATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (20 bp):
AATTAAGAACAAAAGCATGA
Found at i:82251447 original size:42 final size:42
Alignment explanation
Indices: 82251340--82251501 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
82251330 CGATATGTGT
* * * *
82251340 TTTCGTGTAAGACCACATCTAGGACGCTGGCATCG-ACTTATGC
1 TTTCATGTAAGACCACATCTGGGACGTTGGCATCGTA-TT-TGA
*
82251383 TTTACATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA
1 TTT-CATGTAAGACCACATCTGGGACGTTGGCATCGTATTTGA
*
82251426 TTTCATGTAAGACC-CTATCTGGGACAG-TGGGATCGATATTTGA
1 TTTCATGTAAGACCAC-ATCTGGGAC-GTTGGCATCG-TATTTGA
* * **
82251469 TTACATATAAGACCATGTCTGGGACGTTGGCAT
1 TTTCATGTAAGACCACATCTGGGACGTTGGCAT
82251502 TGTACCAGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 41 0.41
44 30 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TTTCATGTAAGACCACATCTGGGACGTTGGCATCGTATTTGA
Found at i:82254433 original size:16 final size:16
Alignment explanation
Indices: 82254414--82254444 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82254404 CTTCTTCACT
82254414 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82254430 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82254445 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82254450 original size:20 final size:20
Alignment explanation
Indices: 82254411--82254450 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82254401 AAACTTCTTC
* *
82254411 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
82254431 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
82254451 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:82254826 original size:55 final size:53
Alignment explanation
Indices: 82254695--82254880 Score: 187
Period size: 55 Copynumber: 3.4 Consensus size: 53
82254685 CTTACCATTC
*
82254695 CCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATGAACTCACCAATG
* * * *
82254748 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGAGCC-TTGCCTTAT-G-AACTCACCAATG
**** * *
82254803 CCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATG-AA-CTCACCAA-TG
* *
82254858 CCATGCCTTGGCATGGTCTTACA
1 CCATGTCTTGACATGGTCTTACA
82254881 CGGTATCGTT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 37 0.33
54 8 0.07
55 64 0.57
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATGAACTCACCAATG
Found at i:82259722 original size:41 final size:41
Alignment explanation
Indices: 82259677--82259794 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82259667 TGAAAGATAA
82259677 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82259718 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82259748 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82259789 ATGTAG
1 ATGTAG
82259795 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82259733 original size:71 final size:71
Alignment explanation
Indices: 82259645--82259808 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82259635 GAGATGTATC
82259645 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82259710 AGGACA
66 AGGACA
82259716 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82259781 AGGACA
66 AGGACA
82259787 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82259809 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82266831 original size:41 final size:41
Alignment explanation
Indices: 82266786--82266903 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82266776 TGAAAGATAA
82266786 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82266827 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82266857 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82266898 ATGTAG
1 ATGTAG
82266904 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82266842 original size:71 final size:71
Alignment explanation
Indices: 82266754--82266917 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82266744 GAGATGTATC
82266754 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82266819 AGGACA
66 AGGACA
82266825 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82266890 AGGACA
66 AGGACA
82266896 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82266918 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82268481 original size:13 final size:13
Alignment explanation
Indices: 82268463--82268487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82268453 CTCTGTGTGA
82268463 TTTGAATTTTGAT
1 TTTGAATTTTGAT
82268476 TTTGAATTTTGA
1 TTTGAATTTTGA
82268488 GTTGATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
TTTGAATTTTGAT
Found at i:82271138 original size:44 final size:42
Alignment explanation
Indices: 82271085--82271238 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 42
82271075 CGATATGTGT
**
82271085 TTTCGTGTAAGACCATGTTTGGGATGTTGGCATCGACT-TATGA
1 TTTCGTGTAAGACCATGTTTGGGACATTGGCATC-A-TATATGA
* * * * *
82271128 TTTACGTGTAAGACTACGTCTGGGGCATTGGCATCATATTTGA
1 TTT-CGTGTAAGACCATGTTTGGGACATTGGCATCATATATGA
* * *
82271171 TTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTTTGGGACATTGGCATC-ATATATGA
* * * * *
82271214 TTACATATAAGACCACGTCTGGGAC
1 TTTCGTGTAAGACCATGTTTGGGAC
82271239 GTTGCCATTG
Statistics
Matches: 89, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 26 0.29
43 38 0.43
44 25 0.28
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTTTGGGACATTGGCATCATATATGA
Found at i:82271202 original size:42 final size:43
Alignment explanation
Indices: 82271075--82271215 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
82271065 ACATAGGATC
* * * *
82271075 CGATATGTGTTTTCGTGTAAGACCATGTTTGGGA-TGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACAG-TGGCAT
* * * * *
82271118 CGACT-TATGATTTACGTGTAAGACTAC-GTCTGGGGCATTGGCAT
1 CGA-TATTTGATTT-CGTGTAAGAC-CCTGTTTGGGACAGTGGCAT
82271162 C-ATATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCAT
82271204 CGATATTTGATT
1 CGATATTTGATT
82271216 ACATATAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.33
43 27 0.35
44 24 0.31
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCAT
Found at i:82276027 original size:68 final size:67
Alignment explanation
Indices: 82275955--82276104 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
82275945 CATCATGTGT
* * * *
82275955 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
82276017 ATGTAG
62 ATGTAG
** * *
82276023 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
82276088 AG
66 AG
82276090 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
82276105 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:82276060 original size:64 final size:64
Alignment explanation
Indices: 82275979--82276162 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
82275969 AGACATTATG
* *
82275979 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
82276043 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
82276108 AA
63 AA
* * * *
82276110 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
82276163 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82277249 original size:2 final size:2
Alignment explanation
Indices: 82277242--82277272 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
82277232 TCATGACATG
82277242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82277273 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82289215 original size:40 final size:40
Alignment explanation
Indices: 82289159--82289326 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
82289149 CAATTGAATG
* *
82289159 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
82289200 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
82289239 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
82289279 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
82289319 ATATCCGG
1 ATATCCGG
82289327 TTGTATCCGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:82289292 original size:80 final size:79
Alignment explanation
Indices: 82289159--82289326 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
82289149 CAATTGAATG
* *
82289159 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
82289224 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
82289239 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
82289303 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
82289319 ATATCCGG
1 ATATCCGG
82289327 TTGTATCCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:82297101 original size:40 final size:40
Alignment explanation
Indices: 82297042--82297329 Score: 279
Period size: 40 Copynumber: 7.2 Consensus size: 40
82297032 CAATTGAATG
* *
82297042 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
82297083 -TAACCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
82297122 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* * *
82297162 ATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
82297203 -TATCCGGGCTAAGACCCAAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * *
82297242 ATATCCGGGCTAATACCCAAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
82297282 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
82297322 ATATCCGG
1 ATATCCGG
82297330 TTGTATCCGA
Statistics
Matches: 207, Mismatches: 24, Indels: 33
0.78 0.09 0.12
Matches are distributed among these distances:
39 14 0.07
40 182 0.88
41 10 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:82297176 original size:80 final size:78
Alignment explanation
Indices: 82297042--82297329 Score: 314
Period size: 80 Copynumber: 3.6 Consensus size: 78
82297032 CAATTGAATG
* * *
82297042 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTT-TAACCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG--TTATATCCGGGCTAAGACCCGAAGG
82297105 CATTCGTGCAAGTTGTT
63 CATT-GTGCAAGTTGTT
* * * *
82297122 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTTATATCTGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTTATATCCGGGCTAAGACCCGAAGGC-
*
82297187 ATTGTGCTAG-TGACTT
64 ATTGTGCAAGTTG--TT
* * * *
82297203 -TATCCGGGCTAAGACCCAAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATATCCGGGCTAAGACCCGAAGGCA
* *
82297267 TTTGTGCGAGTCGTT
65 -TTGTGCAAGTTGTT
*
82297282 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTTATATCCGG
82297330 TTGTATCCGA
Statistics
Matches: 177, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
79 11 0.06
80 158 0.89
81 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGTTATATCCGGGCTAAGACCCGAAGGCAT
TGTGCAAGTTGTT
Found at i:82297329 original size:120 final size:120
Alignment explanation
Indices: 82297042--82297306 Score: 485
Period size: 120 Copynumber: 2.2 Consensus size: 120
82297032 CAATTGAATG
* *
82297042 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTAACCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCAAAGGCA
*
82297107 TTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
66 TTCGTGCAAGTTGTTATATCCGGGCTAATACCCAAAGGCATTTGTGCGAGTCGTT
*
82297162 ATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCAAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCAAAGGCA
82297227 TTCGTGCAAGTTGTTATATCCGGGCTAATACCCAAAGGCATTTGTGCGAGTCGTT
66 TTCGTGCAAGTTGTTATATCCGGGCTAATACCCAAAGGCATTTGTGCGAGTCGTT
*
82297282 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCA
82297307 TTCGTGCGTG
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 139 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCAAAGGCA
TTCGTGCAAGTTGTTATATCCGGGCTAATACCCAAAGGCATTTGTGCGAGTCGTT
Found at i:82298977 original size:33 final size:33
Alignment explanation
Indices: 82298914--82298980 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
82298904 CCCACCCCAA
*
82298914 ATGCAATTCAATCAGATCATTTCAAACAATTTC
1 ATGCAATTCAATCAGATCATATCAAACAATTTC
* * *
82298947 ATGCCATTCAATCAGAGTTATATC-ACCAATTTC
1 ATGCAATTCAATCAGA-TCATATCAAACAATTTC
82298980 A
1 A
82298981 AGAAACTAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (33 bp):
ATGCAATTCAATCAGATCATATCAAACAATTTC
Found at i:82304400 original size:46 final size:46
Alignment explanation
Indices: 82304348--82304523 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
82304338 TGGTTGAGCA
*
82304348 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82304394 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
82304439 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82304487 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82304524 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82304504 original size:93 final size:93
Alignment explanation
Indices: 82304345--82304515 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
82304335 GGATGGTTGA
* **
82304345 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82304410 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
82304438 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82304503 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82304516 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82307155 original size:46 final size:45
Alignment explanation
Indices: 82307045--82307262 Score: 190
Period size: 46 Copynumber: 4.8 Consensus size: 45
82307035 AGATTTGTGT
* * * * *
82307045 GCCAGTGTAAGACCATGTATGGGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
82307093 GCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * * **
82307139 GCCACTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * * *
82307185 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
*
82307229 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
82307263 ACGGTTACAT
Statistics
Matches: 140, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 32 0.23
45 2 0.01
46 77 0.55
47 18 0.13
48 10 0.07
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:82314611 original size:29 final size:29
Alignment explanation
Indices: 82314578--82314709 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
82314568 CCTCCGAACT
** * * *
82314578 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
82314607 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82314636 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82314665 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82314694 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82314710 ATCTCATCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82319056 original size:37 final size:37
Alignment explanation
Indices: 82319006--82319081 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
82318996 CAAGAACACA
82319006 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
1 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
82319043 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
1 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
82319080 TC
1 TC
82319082 AATTAGACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.33
Consensus pattern (37 bp):
TCCGGATATTCACAAACTATCGACACTGATTCAATTT
Found at i:82328521 original size:19 final size:19
Alignment explanation
Indices: 82328497--82328534 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
82328487 ACCTATCAAA
82328497 AGAAAAT-AAATGAAAAATT
1 AGAAAATAAAAT-AAAAATT
82328516 AGAAAATAAAATAAAAATT
1 AGAAAATAAAATAAAAATT
82328535 TAAATTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (19 bp):
AGAAAATAAAATAAAAATT
Found at i:82340702 original size:81 final size:84
Alignment explanation
Indices: 82340591--82340769 Score: 206
Period size: 81 Copynumber: 2.2 Consensus size: 84
82340581 GCGTTTCGTG
* *
82340591 ATAGCTTCTGCTATATAAAGCACTTAGTGTGCAA-ATTGGA-ATAGATTCGGCTT-TAT-ATGGC
1 ATAGCTTCAGCTATATAAAGCACTAAGTGTGCAATATT-GATATAGATTCGGCTTATATGATGGC
*
82340652 ACTAAGTGTGAGATA-CTAAT
65 ACTAAATGTGAGATATCT-AT
* ** *
82340672 ATAGCTTCAGCTTTATATGGCACTAAGTGTGCAATATTGATATAGCTTCGGCTTGATATGATGGC
1 ATAGCTTCAGCTATATAAAGCACTAAGTGTGCAATATTGATATAGATTCGGCTT-ATATGATGGC
* *
82340737 ACTAAATGTGCGATATCTTT
65 ACTAAATGTGAGATATCTAT
*
82340757 ATAGCTTCGGCTA
1 ATAGCTTCAGCTA
82340770 ATCATTTATG
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
81 31 0.38
82 15 0.19
84 3 0.04
85 30 0.37
86 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (84 bp):
ATAGCTTCAGCTATATAAAGCACTAAGTGTGCAATATTGATATAGATTCGGCTTATATGATGGCA
CTAAATGTGAGATATCTAT
Found at i:82340747 original size:44 final size:41
Alignment explanation
Indices: 82340591--82340768 Score: 166
Period size: 41 Copynumber: 4.3 Consensus size: 41
82340581 GCGTTTCGTG
* * ** *
82340591 ATAGCTTCTGCTATATAAAGCACTTAGTGTGCAA-ATTGGA-
1 ATAGCTTCGGCTTTATATGGCACTAAGTGTGCAATATT-GAT
* * *
82340631 ATAGATTCGGCTTTATATGGCACTAAGTGTG-AGATACTAAT
1 ATAGCTTCGGCTTTATATGGCACTAAGTGTGCA-ATATTGAT
*
82340672 ATAGCTTCAGCTTTATATGGCACTAAGTGTGCAATATTGAT
1 ATAGCTTCGGCTTTATATGGCACTAAGTGTGCAATATTGAT
* * *
82340713 ATAGCTTCGGCTTGATATGATGGCACTAAATGTGCGATATCT-TT
1 ATAGCTTCGGCTT--TAT-ATGGCACTAAGTGTGCAATAT-TGAT
82340757 ATAGCTTCGGCT
1 ATAGCTTCGGCT
82340769 AATCATTTAT
Statistics
Matches: 114, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 27 0.24
41 49 0.43
42 1 0.01
43 3 0.03
44 32 0.28
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (41 bp):
ATAGCTTCGGCTTTATATGGCACTAAGTGTGCAATATTGAT
Found at i:82344653 original size:31 final size:31
Alignment explanation
Indices: 82344612--82344675 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82344602 CCTTTTCATA
*
82344612 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
82344643 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
82344674 TT
1 TT
82344676 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:82344921 original size:24 final size:24
Alignment explanation
Indices: 82344883--82345034 Score: 236
Period size: 24 Copynumber: 6.4 Consensus size: 24
82344873 CTGGAGGACT
*
82344883 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
82344908 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
82344932 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
82344955 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
82344979 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
82345003 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
82345026 AGCCCTTTT
1 AGCCCTTTT
82345035 TCACTTCCTC
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.36
24 71 0.60
25 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:82344969 original size:71 final size:71
Alignment explanation
Indices: 82344883--82345034 Score: 259
Period size: 71 Copynumber: 2.1 Consensus size: 71
82344873 CTGGAGGACT
*
82344883 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
*
82344948 GGGCGTA
65 GGGCATA
* *
82344955 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
82345020 GGCATA
66 GGCATA
82345026 AGCCCTTTT
1 AGCCCTTTT
82345035 TCACTTCCTC
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:82345034 original size:47 final size:48
Alignment explanation
Indices: 82344883--82345034 Score: 236
Period size: 47 Copynumber: 3.2 Consensus size: 48
82344873 CTGGAGGACT
* *
82344883 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
82344932 AGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
82344979 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
82345026 AGCCCTTTT
1 AGCCCTTTT
82345035 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
47 70 0.73
48 22 0.23
49 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:82345109 original size:20 final size:20
Alignment explanation
Indices: 82345084--82345144 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
82345074 TTATGAATAC
* *
82345084 ATCATGTGCGTACCATACAT
1 ATCATGTGCATATCATACAT
82345104 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82345124 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82345144 A
1 A
82345145 AACCCTAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82352587 original size:29 final size:29
Alignment explanation
Indices: 82352545--82352600 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
82352535 CATATTTCAT
82352545 ATTTCATAACACTGGGCCGAAGCCTTTTC
1 ATTTCATAACACTGGGCCGAAGCCTTTTC
**
82352574 ATTTCATATTACTGGGCCGAAGCCTTT
1 ATTTCATAACACTGGGCCGAAGCCTTT
82352601 ACTGTAAACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (29 bp):
ATTTCATAACACTGGGCCGAAGCCTTTTC
Found at i:82352868 original size:23 final size:24
Alignment explanation
Indices: 82352793--82352956 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
82352783 GCTTTATCAT
*
82352793 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
82352818 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
82352842 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
82352865 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
82352888 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
82352911 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
82352934 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82352957 CACTTCCTCC
Statistics
Matches: 130, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
22 12 0.09
23 64 0.49
24 42 0.32
25 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82360525 original size:30 final size:31
Alignment explanation
Indices: 82360485--82360547 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
82360475 CCTTTTCATA
82360485 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
82360516 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
82360546 TT
1 TT
82360548 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:82360814 original size:23 final size:24
Alignment explanation
Indices: 82360739--82360903 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
82360729 GCTTTATCAT
*
82360739 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
82360764 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
82360788 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
82360811 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
82360835 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
82360858 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
82360881 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82360904 CACTTCCTCC
Statistics
Matches: 131, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
23 68 0.52
24 51 0.39
25 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82360855 original size:70 final size:71
Alignment explanation
Indices: 82360739--82360903 Score: 262
Period size: 70 Copynumber: 2.3 Consensus size: 71
82360729 GCTTTATCAT
*
82360739 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
82360803 GCCCTTTA
64 GCCCTTTA
* * *
82360811 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
82360875 CCTTTA
66 CCTTTA
82360881 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82360904 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 61 0.69
71 15 0.17
72 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:82360903 original size:47 final size:48
Alignment explanation
Indices: 82360739--82360903 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
82360729 GCTTTATCAT
* *
82360739 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
82360788 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
82360835 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
82360881 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82360904 CACTTCCTCC
Statistics
Matches: 108, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
46 21 0.19
47 70 0.65
48 5 0.05
49 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:82360977 original size:20 final size:20
Alignment explanation
Indices: 82360952--82360992 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
82360942 TTATGAATAC
82360952 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82360972 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82360992 A
1 A
82360993 AACCCTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82361024 original size:25 final size:25
Alignment explanation
Indices: 82360996--82361043 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82360986 ATACATAAAC
* * *
82360996 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82361021 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82361044 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:82366917 original size:46 final size:46
Alignment explanation
Indices: 82366867--82367037 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
82366857 TGGTTGAGCA
82366867 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
82366913 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82366958 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82367006 CCCGAGCTCGTTGAGTTGAGT--GAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82367038 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 11 0.11
45 3 0.03
46 47 0.46
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82368406 original size:23 final size:23
Alignment explanation
Indices: 82368350--82368396 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
82368340 GTGGCGTTAC
82368350 ACATGCAATGCAACATAATATTAT
1 ACATGC-ATGCAACATAATATTAT
*
82368374 ACATGGATGCAACATACATATTA
1 ACATGCATGCAACATA-ATATTA
82368397 CATGACATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.28
Consensus pattern (23 bp):
ACATGCATGCAACATAATATTAT
Done.