Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 268 of 425
Found at i:82368526 original size:27 final size:27
Alignment explanation
Indices: 82368496--82368568 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
82368486 GGCATTTCGG
*
82368496 TCATTTTATCACATAAGGGAAAAATCA
1 TCATTTTATCACATGAGGGAAAAATCA
**
82368523 TCATTTTATCACATGAGGGAAAAATTG
1 TCATTTTATCACATGAGGGAAAAATCA
82368550 TCATTTTATCACATGAGGG
1 TCATTTTATCACATGAGGG
82368569 TTTAGGTACG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATGAGGGAAAAATCA
Found at i:82376938 original size:34 final size:34
Alignment explanation
Indices: 82376900--82377016 Score: 123
Period size: 34 Copynumber: 3.5 Consensus size: 34
82376890 CAAATACATT
82376900 CTGGGCCTAAGCCCATATCAGTAACAGTAGCAGA
1 CTGGGCCTAAGCCCATATCAGTAACAGTAGCAGA
* * * *
82376934 CTGGGCCTTAGCCCATTTCAGTAACAGTTGTAG-
1 CTGGGCCTAAGCCCATATCAGTAACAGTAGCAGA
* * *
82376967 -TGAGGCCTAAGCTCATATTAGTAACAGTGGCA-A
1 CTG-GGCCTAAGCCCATATCAGTAACAGTAGCAGA
*
82377000 TCTGGGCCTTAGCCCAT
1 -CTGGGCCTAAGCCCAT
82377017 TACAGAATCA
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
32 2 0.03
33 23 0.34
34 40 0.60
35 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (34 bp):
CTGGGCCTAAGCCCATATCAGTAACAGTAGCAGA
Found at i:82377317 original size:23 final size:22
Alignment explanation
Indices: 82377291--82377341 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 22
82377281 CACCCTATGC
82377291 GATGCAACATA-ATATTATACATG
1 GATGCAACATACATA-TA-ACATG
82377314 GATGCAACATACATATAACATG
1 GATGCAACATACATATAACATG
82377336 GCATGC
1 G-ATGC
82377342 TCAAATACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.23
23 17 0.65
24 3 0.12
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (22 bp):
GATGCAACATACATATAACATG
Found at i:82378855 original size:40 final size:40
Alignment explanation
Indices: 82378772--82379028 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
82378762 AAGCCAAGTA
* * * * * *
82378772 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
82378811 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82378851 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82378891 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82378931 CCTTCGGGACTTAGCCCAGATATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*** *
82378971 CCTTCGGG-CTTAGCCCGGA-ATTAGCCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82379010 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82379029 TTATCAATCC
Statistics
Matches: 193, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 43 0.22
40 149 0.77
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82386833 original size:40 final size:40
Alignment explanation
Indices: 82386789--82387006 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
82386779 CACTCGAATA
* *
82386789 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82386829 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82386869 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
82386909 TCTTCGGGACGTAGCCCAGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*** *
82386949 CCTTCGGG-CTTAGCCCGGA-ATTAGCCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82386988 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82387007 TTATCAATCC
Statistics
Matches: 160, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.19
40 129 0.81
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82391589 original size:43 final size:43
Alignment explanation
Indices: 82391535--82391692 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 43
82391525 GAAATAGCTA
*
82391535 CGACTAATTAATTAGCACTAAGTGTGCGATACAATTATAACCT
1 CGACTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCT
*
82391578 CGACTAATTAATTAGCTCTAAGTGTGCGATACAATTATAGCCT
1 CGACTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCT
* * * * *
82391621 CGGCTGATTAATT-GCCACTAAGTGTACGATACAATTATGGCTT
1 CGACTAATTAATTAG-CACTAAGTGTGCGATACAATTATAGCCT
**
82391664 C-AGCTAATTAATCGGCACTAAGTGTGCGA
1 CGA-CTAATTAATTAGCACTAAGTGTGCGA
82391693 GTTCATTGAA
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.01
43 98 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (43 bp):
CGACTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCT
Found at i:82397453 original size:30 final size:30
Alignment explanation
Indices: 82397397--82397453 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
82397387 TTTTGAGACA
* **
82397397 AGGGGTAAAATGGTCATTTTGTCAAAGTCT
1 AGGGGCAAAATGGTCATTTTACCAAAGTCT
82397427 AGGGGCAAAATGGTCATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
82397454 ATATGGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGTCT
Found at i:82397910 original size:46 final size:45
Alignment explanation
Indices: 82397823--82397948 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 45
82397813 TTATGAGAGC
* * * * *
82397823 CAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGAC-CAGT
1 CAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCATCGAGACGAAGT
* *
82397869 GCTAGTGTAAGATATGTTTGGGACATGCATCGGCCTCGAGACGTAAGT
1 -C-AGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGACG-AAGT
82397917 CAGTGTAAGACATGTTTGGGACATGCATCGGC
1 CAGTGTAAGACATGTTTGGGACATGCATCGGC
82397949 TACAAGATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 43 0.63
47 13 0.19
48 12 0.18
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
CAGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGACGAAGT
Found at i:82401490 original size:15 final size:15
Alignment explanation
Indices: 82401470--82401499 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
82401460 GGATGTGTAG
82401470 TACAAGCTAAATGGC
1 TACAAGCTAAATGGC
82401485 TACAAGCTAAATGGC
1 TACAAGCTAAATGGC
82401500 CAGGTATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TACAAGCTAAATGGC
Found at i:82407289 original size:27 final size:27
Alignment explanation
Indices: 82407259--82407345 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
82407249 GATATCTCGG
82407259 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
*
82407286 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
82407313 TAATTCTACCTTACAGGGGTATTTTAA
1 TAATTCTACCCTACAGGGGTATTTCAA
82407340 TAATTC
1 TAATTC
82407346 CATAACTTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:82410928 original size:17 final size:18
Alignment explanation
Indices: 82410897--82410930 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
82410887 CTCTCCTAAA
82410897 ACGATTCTGATCTTTCTC
1 ACGATTCTGATCTTTCTC
82410915 ACGATTCT-ATCTTTCT
1 ACGATTCTGATCTTTCT
82410931 GTATGCTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
ACGATTCTGATCTTTCTC
Found at i:82413670 original size:26 final size:27
Alignment explanation
Indices: 82413641--82413691 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
82413631 CACAAGTTAG
*
82413641 TCATTT-ACGCATGAGGGGCAAAATAA
1 TCATTTAACACATGAGGGGCAAAATAA
* *
82413667 TCATTTAACACCTTAGGGGCAAAAT
1 TCATTTAACACATGAGGGGCAAAAT
82413692 TATAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
TCATTTAACACATGAGGGGCAAAATAA
Found at i:82413741 original size:27 final size:27
Alignment explanation
Indices: 82413711--82413807 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
82413701 ACCGCACAAG
* *
82413711 GGTATCTCGGTAATTCTACCCTACAGC
1 GGTATTTCAGTAATTCTACCCTACAGC
* * *
82413738 GGTATTTCAATAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAGC
*
82413765 GGTATTTCAGTAATTCTACCTTACAAG-
1 GGTATTTCAGTAATTCTACCCTAC-AGC
*
82413792 GGTATTTTAGTAATTC
1 GGTATTTCAGTAATTC
82413808 CACAACTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 58 0.97
28 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGC
Found at i:82416881 original size:40 final size:40
Alignment explanation
Indices: 82416794--82416944 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
82416784 AATTGAATGA
* * * **
82416794 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
82416834 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
82416875 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
82416914 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
82416945 AAGATCGTGA
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 82 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:82426240 original size:40 final size:40
Alignment explanation
Indices: 82426196--82426378 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
82426186 GCTACTCGTT
*
82426196 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
82426236 CAAATGCCTTCGGGACTTAACCCGATT-TAGTGACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
82426275 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
82426314 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82426355 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82426379 ACATCATTCG
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 10 0.08
39 43 0.36
40 54 0.45
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82426283 original size:39 final size:39
Alignment explanation
Indices: 82426196--82426377 Score: 199
Period size: 39 Copynumber: 4.6 Consensus size: 39
82426186 GCTACTCGTT
* *
82426196 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* * *
82426236 CAAATGCCTTCGGGACTTAACCCGATTTAGTGACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* *
82426275 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* * * *
82426314 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
82426355 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
82426378 GACATCATTC
Statistics
Matches: 119, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
38 9 0.08
39 49 0.41
40 48 0.40
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:82431047 original size:41 final size:42
Alignment explanation
Indices: 82431002--82431117 Score: 105
Period size: 41 Copynumber: 2.8 Consensus size: 42
82430992 CCAAATTTGA
82431002 AATTTAAACTTAAAATCTAATTGAACTTAAAATA-AAAA-ACT
1 AATTTAAACTTAAAATCTAATTGAACTTAAAA-ACAAAATACT
* * * **
82431043 AATTT-AATTTATAAATTTGATTGAACTTAAAAACAAAATTTT
1 AATTTAAACTTA-AAATCTAATTGAACTTAAAAACAAAATACT
* *
82431085 AATTTAAACTAAAACACCCTAATTGAA-TTAAAA
1 AATTTAAACTTAAA-A-TCTAATTGAACTTAAAA
82431118 GGTCTAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
40 6 0.10
41 27 0.46
42 8 0.14
43 11 0.19
44 7 0.12
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (42 bp):
AATTTAAACTTAAAATCTAATTGAACTTAAAAACAAAATACT
Found at i:82433500 original size:16 final size:17
Alignment explanation
Indices: 82433475--82433507 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82433465 GAAAAGGACT
*
82433475 AAATTGAAAA-GATAAA
1 AAATTAAAAACGATAAA
82433491 AAATTAAAAACGATAAA
1 AAATTAAAAACGATAAA
82433508 TGGATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (17 bp):
AAATTAAAAACGATAAA
Found at i:82434163 original size:48 final size:49
Alignment explanation
Indices: 82434103--82434217 Score: 151
Period size: 48 Copynumber: 2.3 Consensus size: 49
82434093 CCTTTGCGAG
* *
82434103 CTTCCCGTTAATGGCTCTCCGGAGCTTCCCGATA-TTGGCTCACATAAA
1 CTTCCCGTTAATGGCTCTCCAGAGCTTCCCGATACATGGCTCACATAAA
* * * *
82434151 CTTCTCGTTAATGGCTCTCCAGAGCTTCCCGTTACATGGCTCACATTAG
1 CTTCCCGTTAATGGCTCTCCAGAGCTTCCCGATACATGGCTCACATAAA
*
82434200 CTTCCAGTTATATGGCTC
1 CTTCCCGTTA-ATGGCTC
82434218 GAAAGAGCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 31 0.54
49 19 0.33
50 7 0.12
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.32
Consensus pattern (49 bp):
CTTCCCGTTAATGGCTCTCCAGAGCTTCCCGATACATGGCTCACATAAA
Found at i:82434201 original size:25 final size:24
Alignment explanation
Indices: 82434100--82434217 Score: 103
Period size: 24 Copynumber: 4.8 Consensus size: 24
82434090 GGCCCTTTGC
* **
82434100 GAGCTTCCCGTTAATGGCTCTCCG
1 GAGCTTCCCGTTAATGGCTCACAT
* *
82434124 GAGCTTCCCGATATTGGCTCACAT
1 GAGCTTCCCGTTAATGGCTCACAT
* * * *
82434148 AAACTTCTCGTTAATGGCTCTCCA-
1 GAGCTTCCCGTTAATGGCTC-ACAT
82434172 GAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTA-ATGGCTCACAT
* *
82434197 TAGCTTCCAGTTATATGGCTC
1 GAGCTTCCCGTTA-ATGGCTC
82434218 GAAAGAGCTT
Statistics
Matches: 73, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
24 46 0.63
25 27 0.37
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.31
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCACAT
Found at i:82434226 original size:25 final size:25
Alignment explanation
Indices: 82434157--82434227 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
82434147 TAAACTTCTC
* * *
82434157 GTTA-ATGGCTCTCCAGAGCTTCCC
1 GTTACATGGCTCACAAGAGCTTCCA
**
82434181 GTTACATGGCTCACATTAGCTTCCA
1 GTTACATGGCTCACAAGAGCTTCCA
*
82434206 GTTATATGGCTCGA-AAGAGCTT
1 GTTACATGGCTC-ACAAGAGCTT
82434228 TCTGTTATGT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 4 0.11
25 32 0.86
26 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (25 bp):
GTTACATGGCTCACAAGAGCTTCCA
Found at i:82435622 original size:55 final size:53
Alignment explanation
Indices: 82435535--82435743 Score: 210
Period size: 55 Copynumber: 3.9 Consensus size: 53
82435525 ATTAGGGTTT
* *
82435535 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * *
82435590 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATAAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
82435645 AAAGG-ACCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGAAACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
82435698 AAGGATACCATGTAAGACCATG-TAAGACATGGCAA-TGGTAAGTTTC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTC
82435744 AAAAGGATAC
Statistics
Matches: 126, Mismatches: 21, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
52 19 0.15
53 28 0.22
54 8 0.06
55 67 0.53
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:82443342 original size:55 final size:53
Alignment explanation
Indices: 82443255--82443509 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
82443245 ATTAGGGTTT
* * *
82443255 AAGGATATCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAGGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
82443310 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
82443365 AAAGG-TCCCTTGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
82443418 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
** * * * *
82443467 AAGGATACCGCGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
82443510 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 41 0.24
54 11 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:82443461 original size:108 final size:110
Alignment explanation
Indices: 82443265--82443462 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
82443255 AAGGATATCA
* *
82443265 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAGGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
82443330 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCT
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCT
* *
82443375 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
82443437 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
82443463 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCT
Found at i:82444819 original size:16 final size:16
Alignment explanation
Indices: 82444798--82444829 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82444788 TGTTCTCGAA
82444798 CCATTTCAATTTCATG
1 CCATTTCAATTTCATG
82444814 CCATTTCAATTTCATG
1 CCATTTCAATTTCATG
82444830 TTTTAAGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
CCATTTCAATTTCATG
Found at i:82448632 original size:46 final size:46
Alignment explanation
Indices: 82448574--82448668 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
82448564 GGTTAAACTG
*
82448574 AAACTCATATGAGTTGACTGAAGCTCATGAGAGCTAAACAGAAAGC
1 AAACACATATGAGTTGACTGAAGCTCATGAGAGCTAAACAGAAAGC
82448620 AAACACATATGAGTTGACTGAAGCTCATGAGAGCTAAACAGAAAGC
1 AAACACATATGAGTTGACTGAAGCTCATGAGAGCTAAACAGAAAGC
82448666 AAA
1 AAA
82448669 TACGAGAGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (46 bp):
AAACACATATGAGTTGACTGAAGCTCATGAGAGCTAAACAGAAAGC
Found at i:82450311 original size:11 final size:11
Alignment explanation
Indices: 82450295--82450350 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
82450285 TTATATACTA
82450295 AATAAAATAAT
1 AATAAAATAAT
82450306 AATAAAAT-AT
1 AATAAAATAAT
*
82450316 AATTAAAATCA-
1 AA-TAAAATAAT
*
82450327 AATCAAAATATT
1 AAT-AAAATAAT
*
82450339 AATAAACTAAT
1 AATAAAATAAT
82450350 A
1 A
82450351 TTTATTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 5 0.14
11 28 0.76
12 4 0.11
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:82450323 original size:22 final size:23
Alignment explanation
Indices: 82450295--82450350 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
82450285 TTATATACTA
82450295 AATAAAATAATAAT-AAAATA-T
1 AATAAAATAATAATCAAAATATT
*
82450316 AATTAAAATCA-AATCAAAATATT
1 AA-TAAAATAATAATCAAAATATT
*
82450339 AATAAACTAATA
1 AATAAAATAATA
82450351 TTTATTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 5 0.18
22 19 0.68
23 4 0.14
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAAAATAATAATCAAAATATT
Found at i:82453193 original size:29 final size:29
Alignment explanation
Indices: 82453151--82453208 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
82453141 TTTTTAGGTC
*
82453151 TCATATTCTTGCCATGAATGACCTCTCTT
1 TCATATTCTTGCCATGAACGACCTCTCTT
82453180 TCATATTCTTGCCATGAACGACCTCTCTT
1 TCATATTCTTGCCATGAACGACCTCTCTT
82453209 CAAGTTTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (29 bp):
TCATATTCTTGCCATGAACGACCTCTCTT
Found at i:82456851 original size:35 final size:32
Alignment explanation
Indices: 82456769--82456868 Score: 107
Period size: 35 Copynumber: 3.1 Consensus size: 32
82456759 AGAGGTGGAG
* *
82456769 AAGAAAAAGAAAAGAAAA-GAAAAACGGAAAT
1 AAGAAAAATAAAAGAAAAGGAAAAACGGAAAA
**
82456800 GGGAAAGAATAAAAGAAAAGGGAAAAACGAGAAAA
1 AAGAAA-AATAAAAGAAAA-GGAAAAACG-GAAAA
82456835 AAGAAATAATAAAAGAAAAGG-AAAA-GGAAAA
1 AAGAAA-AATAAAAGAAAAGGAAAAACGGAAAA
82456866 AAG
1 AAG
82456869 TAATGACATC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
31 12 0.21
32 12 0.21
33 4 0.07
34 10 0.17
35 20 0.34
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (32 bp):
AAGAAAAATAAAAGAAAAGGAAAAACGGAAAA
Found at i:82461840 original size:30 final size:30
Alignment explanation
Indices: 82461796--82461855 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82461786 ACTTAACAAG
82461796 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* * *
82461826 CAAATGCCTTTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
82461856 TAATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:82471175 original size:18 final size:18
Alignment explanation
Indices: 82471152--82471186 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82471142 GGAAGAGGAA
82471152 AAGCTAAAAATTTTAGCT
1 AAGCTAAAAATTTTAGCT
82471170 AAGCTAAAAATTTTAGC
1 AAGCTAAAAATTTTAGC
82471187 CAAAAGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (18 bp):
AAGCTAAAAATTTTAGCT
Found at i:82471883 original size:15 final size:16
Alignment explanation
Indices: 82471863--82471895 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
82471853 ATATATTTTT
82471863 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
82471878 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
82471895 T
1 T
82471896 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:82471981 original size:22 final size:22
Alignment explanation
Indices: 82471942--82472000 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
82471932 GTTTTAAGAA
*
82471942 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
82471963 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
82471985 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
82472001 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:82472017 original size:26 final size:24
Alignment explanation
Indices: 82471971--82472030 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
82471961 ATTTGTTTTA
*
82471971 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
82471995 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
82472021 TTTTTTATTT
1 ATATTTATTT
82472031 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:82480284 original size:28 final size:27
Alignment explanation
Indices: 82480218--82480287 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
82480208 ATAGTGAGTC
*
82480218 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
82480245 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
82480273 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82480288 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82480360 original size:42 final size:42
Alignment explanation
Indices: 82480296--82480402 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
82480286 CTGTACAAAT
*
82480296 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
* *
82480338 TTTATACCCGTACACTTAGTGCCAATCTTGTCATCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
82480380 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
82480403 GAGACCAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:82495473 original size:24 final size:24
Alignment explanation
Indices: 82495441--82495488 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
82495431 ACACTCCTCA
82495441 ACTTAATTTATTCACAACAATGTT
1 ACTTAATTTATTCACAACAATGTT
*
82495465 ACTTAATTTATTTACAACAATGTT
1 ACTTAATTTATTCACAACAATGTT
82495489 TAAATGTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.44
Consensus pattern (24 bp):
ACTTAATTTATTCACAACAATGTT
Found at i:82496055 original size:10 final size:10
Alignment explanation
Indices: 82496040--82496067 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
82496030 ATTAAGGGAA
82496040 AAAGTAAAAC
1 AAAGTAAAAC
82496050 AAAGTAAAAC
1 AAAGTAAAAC
82496060 AAAGTAAA
1 AAAGTAAA
82496068 CATGTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11
Consensus pattern (10 bp):
AAAGTAAAAC
Found at i:82496744 original size:25 final size:25
Alignment explanation
Indices: 82496715--82496766 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
82496705 TTTGGCTTGA
**
82496715 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
82496740 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
82496765 CA
1 CA
82496767 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:82501953 original size:93 final size:93
Alignment explanation
Indices: 82501794--82501966 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
82501784 CGCCCATAAG
* * * *
82501794 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82501859 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
82501887 CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82501952 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
82501967 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82501962 original size:46 final size:46
Alignment explanation
Indices: 82501787--82501962 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
82501777 TGTAACCCGC
* * * * *
82501787 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
82501833 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
82501883 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
82501926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82501963 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:82501981 original size:46 final size:47
Alignment explanation
Indices: 82501838--82501981 Score: 131
Period size: 46 Copynumber: 3.1 Consensus size: 47
82501828 CGCATCCATG
* * *
82501838 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* * *
82501886 A-CGAACTCAGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
82501931 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
82501977 AGTGA
1 AGTGA
82501982 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 34 0.44
47 29 0.37
48 5 0.06
50 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:82506774 original size:48 final size:48
Alignment explanation
Indices: 82506705--82507709 Score: 1629
Period size: 48 Copynumber: 21.0 Consensus size: 48
82506695 AGATAAATAT
82506705 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
82506753 ATATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
82506800 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82506848 ATATATGTGTGATATGTAT-TGTGGTAAAGCCGAATGGCGAATATGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82506895 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82506943 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82506991 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* **
82507039 ATATATCTAAGATATGTATATGTGGTAAAGCCGAAT-GCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507086 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507134 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
82507182 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82507230 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507278 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507326 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82507374 ATATATATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82507422 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82507470 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82507518 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507566 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
82507614 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGACGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
82507662 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82507710 TGTTGTAACA
Statistics
Matches: 893, Mismatches: 61, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 130 0.15
48 763 0.85
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:82507804 original size:37 final size:37
Alignment explanation
Indices: 82507754--82507950 Score: 349
Period size: 37 Copynumber: 5.3 Consensus size: 37
82507744 GGATATATAT
* *
82507754 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
82507791 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
82507828 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
*
82507865 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
* *
82507902 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
82507939 TCCGGGTAAGAC
1 TCCGGGTAAGAC
82507951 TTCGTAATAA
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 154 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
Found at i:82509194 original size:40 final size:40
Alignment explanation
Indices: 82509126--82509437 Score: 518
Period size: 40 Copynumber: 7.8 Consensus size: 40
82509116 GAGAATTGAG
* * * *
82509126 AGTGATATATCCGGGCTAAATTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
82509166 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
82509206 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
82509246 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
82509286 AGTGATGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
82509326 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
82509366 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
82509406 AGTGATGTATCCGGGC-AAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAA-GTTCCGAAGAGCA
82509438 ATCATGCTGG
Statistics
Matches: 259, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 257 0.99
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:82512994 original size:48 final size:48
Alignment explanation
Indices: 82512925--82513356 Score: 684
Period size: 48 Copynumber: 9.0 Consensus size: 48
82512915 AGACAAATAT
82512925 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82512973 ATATATGTGTGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82513021 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
82513069 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82513117 ATATGTTTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82513165 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
82513213 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* **
82513261 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82513309 ATATATGTGTGATATGTATATATGGTAAAACCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82513357 TGTTGTAACA
Statistics
Matches: 350, Mismatches: 34, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 350 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:82513454 original size:37 final size:37
Alignment explanation
Indices: 82513401--82513523 Score: 219
Period size: 37 Copynumber: 3.3 Consensus size: 37
82513391 GGAAATATAT
*
82513401 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82513438 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82513475 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82513512 TCCGGGTAAGAC
1 TCCGGGTAAGAC
82513524 TTCGTAATAA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82523648 original size:38 final size:38
Alignment explanation
Indices: 82523606--82523682 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
82523596 TCAAATTTTT
* *
82523606 CGAACGATAGTTCCATCAAATTAGCCAGAAACACAACC
1 CGAACAATAGCTCCATCAAATTAGCCAGAAACACAACC
*
82523644 CGAACAATAGCTCCGTCAAATTAGCCAGAAACACAACC
1 CGAACAATAGCTCCATCAAATTAGCCAGAAACACAACC
82523682 C
1 C
82523683 ATTGTACATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.42, C:0.31, G:0.13, T:0.14
Consensus pattern (38 bp):
CGAACAATAGCTCCATCAAATTAGCCAGAAACACAACC
Found at i:82525371 original size:96 final size:96
Alignment explanation
Indices: 82525246--82525438 Score: 386
Period size: 96 Copynumber: 2.0 Consensus size: 96
82525236 CTCAATGCAG
82525246 TTTTAATCATATCAAAGTCTTCTAACTAAAGTATTTCTAAGTTAGAAGTACTTACAGGATCGACG
1 TTTTAATCATATCAAAGTCTTCTAACTAAAGTATTTCTAAGTTAGAAGTACTTACAGGATCGACG
82525311 CTGGAGACTTAGTATACCATAAAATTACATT
66 CTGGAGACTTAGTATACCATAAAATTACATT
82525342 TTTTAATCATATCAAAGTCTTCTAACTAAAGTATTTCTAAGTTAGAAGTACTTACAGGATCGACG
1 TTTTAATCATATCAAAGTCTTCTAACTAAAGTATTTCTAAGTTAGAAGTACTTACAGGATCGACG
82525407 CTGGAGACTTAGTATACCATAAAATTACATT
66 CTGGAGACTTAGTATACCATAAAATTACATT
82525438 T
1 T
82525439 CAGATTTTAA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (96 bp):
TTTTAATCATATCAAAGTCTTCTAACTAAAGTATTTCTAAGTTAGAAGTACTTACAGGATCGACG
CTGGAGACTTAGTATACCATAAAATTACATT
Found at i:82525894 original size:19 final size:19
Alignment explanation
Indices: 82525862--82525901 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
82525852 ATCACACGAT
*
82525862 ATCACAAATTAAAATCCAA
1 ATCACAAATTAAAACCCAA
82525881 ATCA-AAATTAAAAACCCAA
1 ATCACAAATT-AAAACCCAA
82525900 AT
1 AT
82525902 GTCCAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (19 bp):
ATCACAAATTAAAACCCAA
Found at i:82527353 original size:16 final size:15
Alignment explanation
Indices: 82527327--82527356 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82527317 TTATTTTTCA
82527327 AATAAAACAAATAAC
1 AATAAAACAAATAAC
82527342 AATAATAACAAATAA
1 AATAA-AACAAATAA
82527357 AATCTAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAAAACAAATAAC
Found at i:82535291 original size:40 final size:40
Alignment explanation
Indices: 82535236--82535416 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
82535226 CATTTGAATG
82535236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
82535276 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
82535316 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
82535356 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
82535396 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
82535417 AAACTTGGGT
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 113 0.90
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:82539156 original size:40 final size:40
Alignment explanation
Indices: 82539107--82539205 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
82539097 CGGAGTTTAA
* ** *
82539107 CCGGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCAGGACATAAC
* * *
82539147 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACCTAAC
1 CCGGATATAGCAACTCGCACAAATGCCTTCAGGACATAAC
* *
82539187 CCGGATTTAGTAACTCGCA
1 CCGGATATAGCAACTCGCA
82539206 TCCATGCCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCAGGACATAAC
Found at i:82539213 original size:40 final size:40
Alignment explanation
Indices: 82539126--82539312 Score: 141
Period size: 40 Copynumber: 4.7 Consensus size: 40
82539116 GCTACTCGTT
* *
82539126 CAAATGCCTTCAGGACATAGCCCGG-TTATAGCAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* *
82539166 CAAATGCCTTCGGGACCTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * *
82539206 TC-CATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCACA
1 -CAAATGCCTTCGGGACATAGCCC-GGATTTAGTAACTCGCA
* * * * * * * *
82539245 CAAAGGCCTT-TGGATCTTAGTCCGAATATAGTCAATTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGT-AACTCGCA
* *
82539286 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACATAGCCCGGAT
82539313 ATCATTCGAA
Statistics
Matches: 117, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
38 3 0.03
39 26 0.22
40 58 0.50
41 27 0.23
42 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:82543281 original size:18 final size:18
Alignment explanation
Indices: 82543258--82543303 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
82543248 TGGCGTGGTT
*
82543258 TTGGTTTATCGTGTGTCA
1 TTGGTTTATCGCGTGTCA
*
82543276 TTGGTTTATCGCGTGTCC
1 TTGGTTTATCGCGTGTCA
82543294 TTGGTTTATC
1 TTGGTTTATC
82543304 ATGCATCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.09, C:0.15, G:0.26, T:0.50
Consensus pattern (18 bp):
TTGGTTTATCGCGTGTCA
Found at i:82557044 original size:71 final size:71
Alignment explanation
Indices: 82556960--82557123 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82556950 CGATTTGTCT
82556960 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82557025 CTTTCA
66 CTTTCA
82557031 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82557096 CTTTCA
66 CTTTCA
82557102 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82557124 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82557161 original size:71 final size:70
Alignment explanation
Indices: 82556960--82557157 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
82556950 CGATTTGTCT
* * * *
82556960 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82557025 CTTTCA
65 CTTTCA
* * * *
82557031 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82557096 CTTTCA
65 CTTTCA
* *
82557102 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82557158 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82563339 original size:23 final size:23
Alignment explanation
Indices: 82563313--82563359 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
82563303 TCATTCTCTT
*
82563313 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
82563336 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
82563359 T
1 T
82563360 AATGGCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:82572310 original size:29 final size:29
Alignment explanation
Indices: 82572280--82572481 Score: 164
Period size: 29 Copynumber: 7.0 Consensus size: 29
82572270 CCACAAGACA
*
82572280 TACCTT-TAACAAAGATATCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* **
82572308 ATA-CTTTTAACAGTGATAGCCACAAAGGC
1 -TACCTTATAACAAAGATAGCCACAAAGGC
* * *
82572337 TTCCTTATAACAGAGATCGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* *
82572366 TTCCTTATAACAAAGATCGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* * * * *
82572395 TTCTTTATAACAGAGATCA-ACACAAAGAC
1 TACCTTATAACAAAGAT-AGCCACAAAGGC
*
82572424 TTCCTTATAA-AAGAGATCA-CCACAAAGGC
1 TACCTTATAACAA-AGAT-AGCCACAAAGGC
* * *
82572453 T-TCTTTTAACAGAGATAGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
82572481 T
1 T
82572482 CACTTTTATG
Statistics
Matches: 147, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.01
28 26 0.18
29 120 0.82
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (29 bp):
TACCTTATAACAAAGATAGCCACAAAGGC
Found at i:82572377 original size:58 final size:58
Alignment explanation
Indices: 82572298--82572481 Score: 228
Period size: 58 Copynumber: 3.2 Consensus size: 58
82572288 ACAAAGATAT
* * * *
82572298 CCACAAAGGCATACTTTTAACAGTGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
1 CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
* * * *
82572356 CCACAAAGGCTTCCTTATAACAAAGATCGCCACAAAGGCTTCTTTATAACAGAGATCA
1 CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
* * * * *
82572414 ACACAAAGACTTCCTTATAAAAGAGATCA-CCACAAAGGCTT-CTTTTAACAGAGATAG
1 CCACAAAGGCTTCCTTATAACAGAGAT-AGCCACAAAGGCTTCCTTATAACAGAGATCG
82572471 CCACAAAGGCT
1 CCACAAAGGCT
82572482 CACTTTTATG
Statistics
Matches: 106, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.20
58 85 0.80
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (58 bp):
CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
Found at i:82572406 original size:87 final size:85
Alignment explanation
Indices: 82572282--82572489 Score: 274
Period size: 87 Copynumber: 2.4 Consensus size: 85
82572272 ACAAGACATA
* * * *
82572282 CCTTTAACAAAGATATCCACAAAGGCATACTTTTAACAGTGAT-AGCCACAAAGGCTTCCTTATA
1 CCTTTAACAAAGATAGCCACAAAGGC-TACTTTTAACAGAGATCA-ACACAAAGACTTCCTTATA
* *
82572346 ACAGAGATCGCCACAAAGGCTT
64 AAAGAGATCACCACAAAGGCTT
* *
82572368 CCTTATAACAAAGATCGCCACAAAGGCTTCTTTATAACAGAGATCAACACAAAGACTTCCTTATA
1 CCTT-TAACAAAGATAGCCACAAAGGCTACTTT-TAACAGAGATCAACACAAAGACTTCCTTATA
82572433 AAAGAGATCACCACAAAGGCTT
64 AAAGAGATCACCACAAAGGCTT
* *
82572455 CTTTTAACAGAGATAGCCACAAAGGCTCACTTTTA
1 CCTTTAACAAAGATAGCCACAAAGGCT-ACTTTTA
82572490 TGAAAATAGG
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
86 32 0.30
87 73 0.69
88 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (85 bp):
CCTTTAACAAAGATAGCCACAAAGGCTACTTTTAACAGAGATCAACACAAAGACTTCCTTATAAA
AGAGATCACCACAAAGGCTT
Found at i:82573348 original size:13 final size:13
Alignment explanation
Indices: 82573326--82573358 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82573316 AAGGGTTTGT
82573326 TTAT-TAAACTAA
1 TTATCTAAACTAA
82573338 TTATCTAAACTAA
1 TTATCTAAACTAA
*
82573351 TTAACTAA
1 TTATCTAA
82573359 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:82576289 original size:17 final size:17
Alignment explanation
Indices: 82576255--82576313 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
82576245 AAAATAAAAT
*
82576255 AATAAAATAG-AAATGAA
1 AATAAAA-AGAAAAAGAA
82576272 AATAAAAAGAAAAAGAA
1 AATAAAAAGAAAAAGAA
* * *
82576289 AAAAATAAATAAAAA-TA
1 AATAA-AAAGAAAAAGAA
82576306 AATAAAAA
1 AATAAAAA
82576314 ATAATAAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.14
17 22 0.63
18 8 0.23
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (17 bp):
AATAAAAAGAAAAAGAA
Found at i:82576304 original size:6 final size:6
Alignment explanation
Indices: 82576245--82576329 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
82576235 TATGTCTTTC
* * * *
82576245 AAAAT- AAAATAA TAAAATA GAAATG AAAATA AAAAGA AAAAGA AAAA-A
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
82576293 ATAAATA AAAATA AATAAAA AATAATA AGAATA AAAA
1 A-AAATA AAAATA AA-AATA AA-AATA AAAATA AAAA
82576330 GATAGGAGGA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
5 7 0.11
6 40 0.62
7 13 0.20
8 5 0.08
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:82576325 original size:20 final size:21
Alignment explanation
Indices: 82576250--82576327 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 21
82576240 CTTTCAAAAT
82576250 AAAATAATAA-AAT--AGAAA
1 AAAATAATAAGAATAAAGAAA
*
82576268 TGAAAATAAAAAGAA-AAAGAAA
1 --AAAATAATAAGAATAAAGAAA
* *
82576290 AAAATAAATAAAAATAAA-TAA
1 AAAAT-AATAAGAATAAAGAAA
82576311 AAAATAATAAGAATAAA
1 AAAATAATAAGAATAAA
82576328 AAGATAGGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
20 25 0.52
21 15 0.31
22 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.15
Consensus pattern (21 bp):
AAAATAATAAGAATAAAGAAA
Found at i:82581741 original size:13 final size:13
Alignment explanation
Indices: 82581719--82581751 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82581709 AAACGTTTGT
82581719 TTAT-TAAACTAA
1 TTATCTAAACTAA
82581731 TTATCTAAACTAA
1 TTATCTAAACTAA
*
82581744 TTAACTAA
1 TTATCTAA
82581752 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:82583983 original size:32 final size:32
Alignment explanation
Indices: 82583941--82584009 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
82583931 AAATGACATG
82583941 GAATGAATTTTGTATTCAAATGATGAATTATT
1 GAATGAATTTTGTATTCAAATGATGAATTATT
*
82583973 GAATTAATTTTGTATTCAAATGATGAATTATT
1 GAATGAATTTTGTATTCAAATGATGAATTATT
82584005 GAATG
1 GAATG
82584010 TTGGGAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.43
Consensus pattern (32 bp):
GAATGAATTTTGTATTCAAATGATGAATTATT
Found at i:82586525 original size:42 final size:42
Alignment explanation
Indices: 82586465--82586589 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 42
82586455 ATTTAGAACC
82586465 ACACGAGTAGAGGACATGGGC-GTGTACCTAGGCCATGTGAGTT
1 ACACGAGTAGAGGACATGGGCAGTGT-CC-AGGCCATGTGAGTT
* *
82586508 ACACGAGT-GAGGACATGGGCATGTGTCCAGGCTATGTGAGTC
1 ACACGAGTAGAGGACATGGGCA-GTGTCCAGGCCATGTGAGTT
** * *
82586550 ATTCGAGTA-AGGACACGGGCATGTGTCCAGGTCATGTGAG
1 ACACGAGTAGAGGACATGGGCA-GTGTCCAGGCCATGTGAG
82586590 CCATGTGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 58 0.81
43 10 0.14
44 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (42 bp):
ACACGAGTAGAGGACATGGGCAGTGTCCAGGCCATGTGAGTT
Found at i:82586604 original size:42 final size:42
Alignment explanation
Indices: 82586517--82586616 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
82586507 TACACGAGTG
* * *
82586517 AGGACATGGGCATGTGTCCAGGCTATGTGAGTCATTCGAGTA
1 AGGACACGGGCATGTGTCCAGGCTATGTGAGCCATTCGAGCA
*
82586559 AGGACACGGGCATGTGTCCAGG-TCATGTGAGCCATGT-GGGCA
1 AGGACACGGGCATGTGTCCAGGCT-ATGTGAGCCAT-TCGAGCA
82586601 AGGACATC-GGCATGTG
1 AGGACA-CGGGCATGTG
82586617 CTTAGGTCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
41 1 0.02
42 48 0.94
43 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.22
Consensus pattern (42 bp):
AGGACACGGGCATGTGTCCAGGCTATGTGAGCCATTCGAGCA
Found at i:82588086 original size:236 final size:236
Alignment explanation
Indices: 82587620--82588373 Score: 629
Period size: 255 Copynumber: 3.1 Consensus size: 236
82587610 GTGTGGAAAG
* * * * * *
82587620 TATAAGGACTTAAAGCATATTCCAAACAATATGATAATTAACAATAAAATATAATGTACTACTAG
1 TATAAGGACTTAGAGCATATTTCAAAC-ATATAATAATAAATAATAATATATAATGTACTACTAG
* ** *
82587685 TATATATAACTATTATTATATTATAGATTATAATAAAATTTATAGTATTACTTGACATGATAATG
65 TATATATAAC-ATTATCATATTATAGATTATAATAAAAGATATAGTATTACTCGACATGATAATG
* ** *
82587750 TTTAATCATTTATGTATATATTTAAACTTTTAAGATATTATATACTATATGATATGATATAACAT
129 TTTAATCATTCACATATATATATAAACTTTTAAGATATTATATACTATATGATATGATATAACAT
* *
82587815 TATATAATATGGCAAGAGGCCTAAGTTTCAAATGTATGAA-AAA
194 TATATAATATAGCAAGAGGCCTAAGTTTCAAATGTA-CAATAAA
*
82587858 TATAAGGACTTAGAGCATATTTCAAACA-AT-ATAATAAATAATAATATATAATGTACTATTA-T
1 TATAAGGACTTAGAGCATATTTCAAACATATAATAATAAATAATAATATATAATGTACTACTAGT
* *
82587920 CATATATAAC-TT-TCATATTATAGATTATAATAAAAGATATAGTATTACTCGATATTATAATGT
66 -ATATATAACATTATCATATTATAGATTATAATAAAAGATATAGTATTACTCGACATGATAATGT
* ** *
82587983 TTAATCCTTGACACACATATATATATAAACTATTT-ATTTATTATATACTATTTGATATGATATA
130 TTAATCATT----CACATATATATATAAACT-TTTAAGATATTATATACTATATGATATGATATA
* * * * *
82588047 ACATTTTATAATATAG-TAGTAAGG-CTAATTTTTAAATGTACAATAAG
190 ACATTATATAATATAGCAAG--AGGCCTAAGTTTCAAATGTACAATAAA
* *
82588094 TAT-AGGATTTTAGAACATATTTCAACCAGTATAACAATAAATAATAATATATGATAATAATTAA
1 TATAAGGA-CTTAGAGCATATTT----C---A-AAC-----AT-ATAATA-AT-A-AATAA-TAA
* ** * *
82588158 TATATAATATACTACTA-TGATATATAACTATTATTTTATTGTAGTTTATAATAAAAGATATAGT
47 TATATAATGTACTACTAGT-ATATATAAC-ATTATCATATTATAGATTATAATAAAAGATATAGT
* * * * * *** * *
82588222 AGTGC-CTGATATTATAATGTTTAATCATTGATGCATATATATAAACTATTAATATATTATATAC
110 ATTACTC-GACATGATAATGTTTAATCATTCACATATATATATAAACTTTTAAGATATTATATAC
* * * *
82588286 TATATGATATGATATAACATTATATAATATAGTAAGATGACTAATTTTCAAACT-TACAA-AAA
174 TATATGATATGATATAACATTATATAATATAGCAAGAGGCCTAAGTTTCAAA-TGTACAATAAA
*
82588348 GTATAGGGACTCT-GAGCATATTTCAA
1 -TATAAGGACT-TAGAGCATATTTCAA
82588374 CCAGTATATA
Statistics
Matches: 421, Mismatches: 54, Indels: 73
0.77 0.10 0.13
Matches are distributed among these distances:
232 53 0.13
233 2 0.00
234 1 0.00
235 44 0.10
236 87 0.21
237 7 0.02
238 25 0.06
240 1 0.00
243 1 0.00
244 3 0.01
247 1 0.00
248 1 0.00
249 1 0.00
251 3 0.01
252 3 0.01
253 2 0.00
254 7 0.02
255 90 0.21
256 35 0.08
258 3 0.01
259 51 0.12
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (236 bp):
TATAAGGACTTAGAGCATATTTCAAACATATAATAATAAATAATAATATATAATGTACTACTAGT
ATATATAACATTATCATATTATAGATTATAATAAAAGATATAGTATTACTCGACATGATAATGTT
TAATCATTCACATATATATATAAACTTTTAAGATATTATATACTATATGATATGATATAACATTA
TATAATATAGCAAGAGGCCTAAGTTTCAAATGTACAATAAA
Found at i:82588278 original size:17 final size:18
Alignment explanation
Indices: 82588256--82588316 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
82588246 TCATTGATGC
82588256 ATATATATAAACTAT-TA
1 ATATATATAAACTATATA
* *
82588273 ATATATTATATACTATATG
1 ATATA-TATAAACTATATA
*
82588292 ATATGATATAACATTATATA
1 ATAT-ATATAA-ACTATATA
82588312 ATATA
1 ATATA
82588317 GTAAGATGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 9 0.26
19 10 0.29
20 11 0.31
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:82588352 original size:255 final size:250
Alignment explanation
Indices: 82587894--82588424 Score: 655
Period size: 255 Copynumber: 2.1 Consensus size: 250
82587884 CAATATAATA
*
82587894 AATAA-TAATATATAATGTACTATTATCATATATAACTTTCATATTATAGATTATAATAAAAGAT
1 AATAATTAATATATAATGTACTACTATCATATATAACTTTCATATTATAGATTATAATAAAAGAT
* * * *
82587958 ATAGTATTACTCGATATTATAATGTTTAATCCTTGACACACATATATATATAAACTATTTATTTA
66 ATAGTATGACTCGATATTATAATGTTTAATCATTGA-ACACA-ATATATATAAACTATTAATATA
* * * *
82588023 TTATATACTATTTGATATGATATAACATTTTATAATATAGTAGTAAGGCTAATTTTTAAATGTAC
129 TTATATACTATATGATATGATATAACATTATATAATATAGTAGTAAGACTAATTTTCAAATGTAC
* * *
82588088 AATAAGTATA-GGATTTTAGAACATATTTCAACCAGTATAACAATAAATAATAATATATGAT
194 AAAAAGTATAGGGACTCT-GAACATATTTCAACCAGTAT----ATAAATAATAATATATGAT
* * * *
82588149 AATAATTAATATATAATATACTACTATGATATATAACTATT-ATTTTATTGTAGTTTATAATAAA
1 AATAATTAATATATAATGTACTACTATCATATATAACT-TTCA---TATTATAGATTATAATAAA
* **
82588213 AGATATAGTAGTGCCT-GATATTATAATGTTTAATCATTG-ATGC-ATATATATAAACTATTAAT
62 AGATATAGTA-TGACTCGATATTATAATGTTTAATCATTGAACACAATATATATAAACTATTAAT
*
82588275 ATATTATATACTATATGATATGATATAACATTATATAATATAGTAAG-ATGACTAATTTTCAAAC
126 ATATTATATACTATATGATATGATATAACATTATATAATATAGT-AGTAAGACTAATTTTCAAA-
* *
82588339 T-TACAAAAAGTATAGGGACTCTGAGCATATTTCAACCAGTATATAACTAATAATATATGAT
189 TGTACAAAAAGTATAGGGACTCTGAACATATTTCAACCAGTATATAAATAATAATATATGAT
* * *
82588400 AAAAATGAATATATTATGTACTACT
1 AATAATTAATATATAATGTACTACT
82588425 CTAGTATTAT
Statistics
Matches: 241, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
251 39 0.16
255 108 0.45
256 38 0.16
257 4 0.02
259 49 0.20
260 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.40
Consensus pattern (250 bp):
AATAATTAATATATAATGTACTACTATCATATATAACTTTCATATTATAGATTATAATAAAAGAT
ATAGTATGACTCGATATTATAATGTTTAATCATTGAACACAATATATATAAACTATTAATATATT
ATATACTATATGATATGATATAACATTATATAATATAGTAGTAAGACTAATTTTCAAATGTACAA
AAAGTATAGGGACTCTGAACATATTTCAACCAGTATATAAATAATAATATATGAT
Found at i:82593832 original size:43 final size:43
Alignment explanation
Indices: 82593784--82593872 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
82593774 CATCTCAGCC
82593784 TTGCACGGTTAC-ATTTTGATTATTCTCTCATCAAATTCATACT
1 TTGCACGGTTACTA-TTTGATTATTCTCTCATCAAATTCATACT
*
82593827 TTGCACGGTTACTATTTGATTATTCTCTCATCAAATTCATATT
1 TTGCACGGTTACTATTTGATTATTCTCTCATCAAATTCATACT
82593870 TTG
1 TTG
82593873 AAACATTAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 43 0.98
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (43 bp):
TTGCACGGTTACTATTTGATTATTCTCTCATCAAATTCATACT
Found at i:82595089 original size:27 final size:29
Alignment explanation
Indices: 82595049--82595105 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
82595039 GCGGATGACT
*
82595049 CAACTCTTATTCAAAC-ACTTGTTTGAACA
1 CAACTCTTATTCAAACAACTT-TTTAAACA
82595078 CAAC-CTT-TTCAAACAACTTTTTAAACA
1 CAACTCTTATTCAAACAACTTTTTAAACA
82595105 C
1 C
82595106 CTATTTAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 15 0.58
28 7 0.27
29 4 0.15
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (29 bp):
CAACTCTTATTCAAACAACTTTTTAAACA
Found at i:82598653 original size:48 final size:48
Alignment explanation
Indices: 82598575--82598881 Score: 289
Period size: 48 Copynumber: 6.4 Consensus size: 48
82598565 TACGTGCACT
*
82598575 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCC
* * ** * * **
82598623 AGTGCAAGACCATGTTTGGAACATTACATCGGCAATG-TAATGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGAT-ATGAGAGCC
* * * * * * *
82598671 AGTGTAGGACCATGTCTGGGACATGGCATC-GACATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* * *
82598719 AGTGTAAGACCATGTCTAGGACATGGCATCGACCAC-ACTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGA-TATGAGAGCC
** * * *
82598767 AGTGTAAGACCATGTCAGGGACATGGCATCGG-CATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* * * *
82598815 AGTGTAAGACCATGTTTGGGACATGGCATCGACCTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCC
*
82598863 AATGTAAGACCATGTTTGG
1 AGTGTAAGACCATGTTTGG
82598882 AACACAGCAT
Statistics
Matches: 208, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
47 6 0.03
48 197 0.95
49 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:82598749 original size:96 final size:95
Alignment explanation
Indices: 82598573--82598877 Score: 321
Period size: 96 Copynumber: 3.2 Consensus size: 95
82598563 GATACGTGCA
* * * *
82598573 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGCAAGACCATG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGATATGAGAGCTAGTGTAAGACCATG
* ** * *
82598637 TTTGGAACATTACATCG-GCA-ATGTAATGAGAG
65 TTAGG-ACATGGCATCGACCACA-CT-ATGAGAG
* * * *
82598669 TTAGTGTAGGACCATGTCTGGGACATGGCATCGACATTGATATGTGCGCTAGTGTAAGACCATGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCATGT
82598734 CTAGGACATGGCATCGACCACACTATGAGAG
66 -TAGGACATGGCATCGACCACACTATGAGAG
* * * *
82598765 CCAGTGTAAGACCATGTCAGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACCATGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCATG-
* * *
82598830 TTGGGACATGGCATCGACCTCGAC-ATGTGAG
65 TTAGGACATGGCATCGACCAC-ACTATGAGAG
* *
82598861 CCAATGTAAGACCATGT
1 CTAGTGTAAGACCATGT
82598878 TTGGAACACA
Statistics
Matches: 178, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 165 0.93
97 9 0.05
98 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (95 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCATGT
TAGGACATGGCATCGACCACACTATGAGAG
Found at i:82598826 original size:144 final size:144
Alignment explanation
Indices: 82598562--82598877 Score: 420
Period size: 144 Copynumber: 2.2 Consensus size: 144
82598552 GACATTTGGG
* * * *
82598562 TGATACGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACGATATGAGAGCCAGTG
** * * *
82598627 CAAGACCATGTTTGGAACATTACATCGGCAATGTAATGAGAGTTAGTGTAGGACCATGTCTGGGA
66 CAAGACCATGTCAGGAACATGACATCGGCAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGA
82598692 CATGGCATCGACAT
131 CATGGCATCGACAT
82598706 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCAC-ACTATGAGAGCCAGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACGA-TATGAGAGCCAGT
* * * * *
82598770 GTAAGACCATGTCAGGGACATGGCATCGGCATTG-AGATGAGAGCTAGTGTAAGACCATGTTTGG
65 GCAAGACCATGTCAGGAACATGACATCGGCAATGTA-ATGAGAGCTAGTGTAAGACCATGTCTGG
*
82598834 GACATGGCATCGACCT
129 GACATGGCATCGACAT
* * * * *
82598850 CGACATGTGAGCCAATGTAAGACCATGT
1 TGATATGTGCGCTAGTGTAAGACCATGT
82598878 TTGGAACACA
Statistics
Matches: 150, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
143 2 0.01
144 148 0.99
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACGATATGAGAGCCAGTG
CAAGACCATGTCAGGAACATGACATCGGCAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCGACAT
Found at i:82606397 original size:48 final size:48
Alignment explanation
Indices: 82606345--82606611 Score: 281
Period size: 48 Copynumber: 5.6 Consensus size: 48
82606335 TGCGCTAGTA
* * *
82606345 TAAGACCATGTATGGGACATGACATCGGCCATGATATGAGAGCCAGTT
1 TAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
* *
82606393 TAAGACCATGTTTGGAACATGGCATCGGCAATG-TAATGAGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCATGAT-ATGAGAGCCAGTG
* * * * * * *
82606441 TAAGGCCATGTCTGGGACATGGCATTGG-TATTGATATGTGCGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCA-TGATATGAGAGCCAGTG
* * *
82606489 TAAGACCATGTTTGGGACATGGCATCGGCCA-CATTATGCGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCATGA-TATGAGAGCCAGTG
* * * * *
82606537 TAAGACCATGTCTGGGACATGGCATTGGTC-TCGACATGTGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCAT-GATATGAGAGCCAGTG
*
82606585 TAAGACCATGTTTGGAACATGGCATCG
1 TAAGACCATGTTTGGGACATGGCATCG
82606612 ACAATTCACC
Statistics
Matches: 182, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.02
48 176 0.97
49 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
Found at i:82606514 original size:96 final size:94
Alignment explanation
Indices: 82606345--82606617 Score: 341
Period size: 96 Copynumber: 2.9 Consensus size: 94
82606335 TGCGCTAGTA
* * * * * * *
82606345 TAAGACCATGTATGGGACATGACATCGGCCAT-GATATGAGAGCCAGTTTAAGACCATGTTTGGA
1 TAAGACCATGTCTGGGACATGGCATTGG-TATCGACATGTGAGCCAGTGTAAGACCATGTTTGGA
82606409 ACATGGCATCGGCAATGTAATGAGAGCCAGTG
65 ACATGGCATCGGCAAT-T-ATGAGAGCCAGTG
* * * * * *
82606441 TAAGGCCATGTCTGGGACATGGCATTGGTATTGATATGTGCGCTAGTGTAAGACCATGTTTGGGA
1 TAAGACCATGTCTGGGACATGGCATTGGTATCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
* *
82606506 CATGGCATCGGCCACATTATGCGAGCTAGTG
66 CATGGCATCGG-CA-ATTATGAGAGCCAGTG
*
82606537 TAAGACCATGTCTGGGACATGGCATTGGTCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACCATGTCTGGGACATGGCATTGGTATCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
*
82606602 CATGGCATCGACAATT
66 CATGGCATCGGCAATT
82606618 CACCCTCTTG
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
94 3 0.02
95 4 0.03
96 142 0.92
97 3 0.02
98 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGGCATTGGTATCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGGCAATTATGAGAGCCAGTG
Found at i:82606588 original size:144 final size:143
Alignment explanation
Indices: 82606328--82606609 Score: 372
Period size: 144 Copynumber: 2.0 Consensus size: 143
82606318 GATATTTGGG
* *
82606328 TGATATGTGCGCTAGTATAAGACCATGTATGGGACATGACATCGGCCATGATATGAGAGCCAGTT
1 TGATATGTGCGCTAGTATAAGACCATGTATGGGACATGACATCGGCCATCATATGAGAGCCAGTG
* * *
82606393 TAAGACCATGTTTGGAACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGGCCATGTCTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGGC-ATGTAATGAGAGCCAGTGTAAGACCATGTCTGGAA
82606458 CATGGCATTGGTAT
130 CATGGCATTGGTAT
* * * * *
82606472 TGATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CATTATGCGAGCTAGT
1 TGATATGTGCGCTAGTATAAGACCATGTATGGGACATGACATCGGCCATCA-TATGAGAGCCAGT
* * * *
82606536 GTAAGACCATGTCTGGGACATGGCATTGGTC-TCG-ACATGTGAGCCAGTGTAAGACCATGTTTG
65 GTAAGACCATGTCTGGAACATGGCATCGG-CAT-GTA-ATGAGAGCCAGTGTAAGACCATGTCTG
82606599 GAACATGGCAT
127 GAACATGGCAT
82606610 CGACAATTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
143 3 0.03
144 116 0.97
145 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (143 bp):
TGATATGTGCGCTAGTATAAGACCATGTATGGGACATGACATCGGCCATCATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCGGCATGTAATGAGAGCCAGTGTAAGACCATGTCTGGAAC
ATGGCATTGGTAT
Found at i:82606956 original size:143 final size:142
Alignment explanation
Indices: 82606698--82606985 Score: 531
Period size: 143 Copynumber: 2.0 Consensus size: 142
82606688 TATGACAATG
*
82606698 ATATAATCATGTTGTGAGTGGTACAGGTTATTATTTGAAACTCATGAGATATGAGTCTAGTTATG
1 ATATAATCATGTTGTGAGTGGTACAGGATATTATTTGAAACTCATGAGATATGAGTCTAGTTATG
*
82606763 TTGCCTTGATGGTAAAAATGACATGAGTAAGTACTAGCTATGAAATGATTTTTGGGATGATATTG
66 TTGCCTTGATGGTAAAAATGACATGAGTAAGTACTAGCTATGAAATGATTTTT-GGACGATATTG
82606828 TAATCTTTGGCTT
130 TAATCTTTGGCTT
*
82606841 ATATAATCATGTTGTGAGTGGTACAGGATCTTATTTGAAACTCATGAGATATGAGTCTAGTTATG
1 ATATAATCATGTTGTGAGTGGTACAGGATATTATTTGAAACTCATGAGATATGAGTCTAGTTATG
*
82606906 TTGCCTTGATGGTAAGAATGACATGAGTAAGTACTAGCTATGAAATGATTTTTGGACGATATTGT
66 TTGCCTTGATGGTAAAAATGACATGAGTAAGTACTAGCTATGAAATGATTTTTGGACGATATTGT
82606971 AATCTTTGGCTT
131 AATCTTTGGCTT
82606983 ATA
1 ATA
82606986 CTTGTGATAT
Statistics
Matches: 141, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
142 26 0.18
143 115 0.82
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (142 bp):
ATATAATCATGTTGTGAGTGGTACAGGATATTATTTGAAACTCATGAGATATGAGTCTAGTTATG
TTGCCTTGATGGTAAAAATGACATGAGTAAGTACTAGCTATGAAATGATTTTTGGACGATATTGT
AATCTTTGGCTT
Found at i:82607974 original size:21 final size:21
Alignment explanation
Indices: 82607940--82607979 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82607930 GTTCATAAGA
* *
82607940 CACACGGGTATGTTGCCCTTC
1 CACACGGGCATGTTCCCCTTC
*
82607961 CACACGGGCGTGTTCCCCT
1 CACACGGGCATGTTCCCCT
82607980 ATCAGCTTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (21 bp):
CACACGGGCATGTTCCCCTTC
Found at i:82608450 original size:18 final size:18
Alignment explanation
Indices: 82608427--82608463 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
82608417 GAGTTACACA
82608427 GCTTGGACACACGCCCAT
1 GCTTGGACACACGCCCAT
82608445 GCTTGGACACACGCCCAT
1 GCTTGGACACACGCCCAT
82608463 G
1 G
82608464 TCCCTAGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (18 bp):
GCTTGGACACACGCCCAT
Found at i:82608517 original size:81 final size:81
Alignment explanation
Indices: 82608367--82608526 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 81
82608357 ACACATGGCG
* * * *
82608367 TGGACACACTCCCATGTCCCTGGCCAATATGACCCTAAATCCAAAAGAATGAGTTACACAGCTTG
1 TGGACACACGCCCATGTCCCTAGCCAATATGACCCTAAATCCAAAACAATGAGTTACACAGCTTA
*
82608432 GACACACGCCCATGCT
66 GACACAAGCCCATGCT
* * * * **
82608448 TGGACACACGCCCATGTCCCTAGCCCATGTGACCTTAAATCCAAAACAGTGAGTTACATGGGC-T
1 TGGACACACGCCCATGTCCCTAGCCAATATGACCCTAAATCCAAAACAATGAGTTACA-CAGCTT
82608512 AGACACAAGCCCATG
65 AGACACAAGCCCATG
82608527 TACCTAGTCC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 65 0.97
82 2 0.03
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (81 bp):
TGGACACACGCCCATGTCCCTAGCCAATATGACCCTAAATCCAAAACAATGAGTTACACAGCTTA
GACACAAGCCCATGCT
Found at i:82608550 original size:63 final size:62
Alignment explanation
Indices: 82608450--82608631 Score: 211
Period size: 63 Copynumber: 2.9 Consensus size: 62
82608440 CCCATGCTTG
* * * *
82608450 GACACACGCCCATGTCCCTAGCCCATGTGACCTTAAATCCAAAACAGTGAGTTACATGGGCTA
1 GACACAAGCCCATGT-CCTAGCCCATGTGACCCTAAATCCAAAATAGTGAGTTACAAGGGCTA
* * * * *
82608513 GACACAAGCCCATGTACCTAGTCCTTGTGACCCTAAATCTAAAATAATGAGTTACAAGGGTTA
1 GACACAAGCCCATGT-CCTAGCCCATGTGACCCTAAATCCAAAATAGTGAGTTACAAGGGCTA
* * * * *
82608576 GAGACAAGCCAATGTCCTTAGCCCGTGTGACACAAAATCCAAAATAGTGAGTTACA
1 GACACAAGCCCATGTCC-TAGCCCATGTGACCCTAAATCCAAAATAGTGAGTTACA
82608632 CAGCCTACCA
Statistics
Matches: 100, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
62 2 0.02
63 98 0.98
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (62 bp):
GACACAAGCCCATGTCCTAGCCCATGTGACCCTAAATCCAAAATAGTGAGTTACAAGGGCTA
Found at i:82609205 original size:7 final size:7
Alignment explanation
Indices: 82609180--82609248 Score: 99
Period size: 7 Copynumber: 10.3 Consensus size: 7
82609170 AAGCAAGCAA
82609180 AAGAAA-
1 AAGAAAG
82609186 AAG-AA-
1 AAGAAAG
82609191 AAGAAAG
1 AAGAAAG
*
82609198 ATGAAAG
1 AAGAAAG
82609205 AAGAAAG
1 AAGAAAG
*
82609212 ATGAAAG
1 AAGAAAG
82609219 AAGAAAG
1 AAGAAAG
82609226 AAGAAAG
1 AAGAAAG
82609233 AAGAAAG
1 AAGAAAG
82609240 AAGAAAG
1 AAGAAAG
82609247 AA
1 AA
82609249 AGAATAAAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
5 5 0.09
6 5 0.09
7 47 0.82
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (7 bp):
AAGAAAG
Found at i:82609258 original size:8 final size:8
Alignment explanation
Indices: 82609186--82609265 Score: 53
Period size: 7 Copynumber: 9.9 Consensus size: 8
82609176 GCAAAAGAAA
82609186 AAGAAAAG
1 AAGAAAAG
82609194 AAAGATGAAAG
1 -AAGA--AAAG
82609205 AAG-AAAG
1 AAGAAAAG
*
82609212 ATG-AAAG
1 AAGAAAAG
82609219 AAG-AAAG
1 AAGAAAAG
82609226 AAG-AAAG
1 AAGAAAAG
82609233 AAG-AAAG
1 AAGAAAAG
82609240 AAGAAAGAAAG
1 AAG--A-AAAG
*
82609251 AATAAAAG
1 AAGAAAAG
82609259 AAGAAAA
1 AAGAAAA
82609266 AAGTTAAAGA
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
7 33 0.54
8 10 0.16
9 5 0.08
10 3 0.05
11 10 0.16
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (8 bp):
AAGAAAAG
Found at i:82609262 original size:11 final size:11
Alignment explanation
Indices: 82609178--82609268 Score: 73
Period size: 11 Copynumber: 8.5 Consensus size: 11
82609168 GGAAGCAAGC
82609178 AAAAGAAA-AA
1 AAAAGAAAGAA
*
82609188 GAAAAGAAAGAT
1 -AAAAGAAAGAA
*
82609200 GAAAG-AAGAA
1 AAAAGAAAGAA
* *
82609210 AGATGAAAGAA
1 AAAAGAAAGAA
*
82609221 GAAAG-AAGAA
1 AAAAGAAAGAA
*
82609231 AGAAGAAAGAA
1 AAAAGAAAGAA
*
82609242 GAAAGAAAGAA
1 AAAAGAAAGAA
82609253 TAAAAG-AAGAA
1 -AAAAGAAAGAA
82609264 AAAAG
1 AAAAG
82609269 TTAAAGAACA
Statistics
Matches: 62, Mismatches: 14, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
10 19 0.31
11 38 0.61
12 5 0.08
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (11 bp):
AAAAGAAAGAA
Found at i:82618902 original size:27 final size:26
Alignment explanation
Indices: 82618835--82618945 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 26
82618825 AGAAGCGTTT
82618835 TGGTGGC-CATGCCACAAATATCTGTTTC
1 TGGTGGCTC-TGCCAC-AATATCTG-TTC
*
82618863 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
82618890 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
82618917 TGGTGACTCTGTCACAATATCTGTTC
1 TGGTGGCTCTGCCACAATATCTGTTC
82618943 TGG
1 TGG
82618946 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
26 14 0.18
27 41 0.53
28 22 0.29
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:82643373 original size:28 final size:28
Alignment explanation
Indices: 82643302--82643414 Score: 144
Period size: 27 Copynumber: 4.2 Consensus size: 28
82643292 GAGGAAGCGT
*
82643302 TCTGGTGGTTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
82643329 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
82643357 TCTGGTGGCTCTACCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
82643384 TCTGGTGACTCTGTCA-TAATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
82643410 TCTGG
1 TCTGG
82643415 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.73
28 16 0.21
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:82643408 original size:54 final size:54
Alignment explanation
Indices: 82643300--82643414 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
82643290 TGGAGGAAGC
* * *
82643300 GTTCTGGTGGTTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
* *
82643354 GTTTCTGGTGGCTCTACCAC-AATATCTGTATCTGGTGACTCTGTCA-TAATATCT
1 G-TTCTGGTGGCTCTACCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
82643408 GTTCTGG
1 GTTCTGG
82643415 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 31 0.57
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:82655984 original size:47 final size:46
Alignment explanation
Indices: 82655865--82656038 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
82655855 GGGATATTTG
*
82655865 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
82655912 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
*
82655958 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
82656005 -AC-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
82656039 TATGGGCGGG
Statistics
Matches: 109, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 32 0.29
46 34 0.31
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:82656032 original size:45 final size:46
Alignment explanation
Indices: 82655869--82656043 Score: 225
Period size: 45 Copynumber: 3.8 Consensus size: 46
82655859 TATTTGGGCA
*
82655869 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
82655915 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
82655960 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
82656008 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82656044 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 38 0.34
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:82658997 original size:15 final size:15
Alignment explanation
Indices: 82658977--82659045 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
82658967 GTATCTTGGG
82658977 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
82658992 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
82659007 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
82659022 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82659037 TTTCTTTAT
1 TTTCTTTAT
82659046 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82659046 original size:30 final size:30
Alignment explanation
Indices: 82658968--82659055 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
82658958 CATAGTATCG
* * * *
82658968 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
82658998 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
82659028 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
82659056 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:82661477 original size:46 final size:46
Alignment explanation
Indices: 82661424--82661599 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
82661414 TATTTGGGCA
82661424 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
82661470 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
82661517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
82661563 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82661600 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:82661579 original size:93 final size:93
Alignment explanation
Indices: 82661420--82661591 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82661410 GGGATATTTG
* *
82661420 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
82661485 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
82661513 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
82661578 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
82661592 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:82673640 original size:29 final size:29
Alignment explanation
Indices: 82673606--82673766 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
82673596 TACTCGATTT
** * *
82673606 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
82673635 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
82673664 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
82673693 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82673722 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82673751 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82673767 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82675546 original size:23 final size:23
Alignment explanation
Indices: 82675492--82675572 Score: 92
Period size: 23 Copynumber: 3.4 Consensus size: 23
82675482 GATCCATGAT
*
82675492 CGGTAAGCTCCTCTTGAGCTGATGAA
1 CGGTAAGCT-CTATTGAGCTGA--AA
*
82675518 CAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCTCTATTGAGCTGAAA
*
82675541 TGGTAAGCTCTATTGAGCTG-AA
1 CGGTAAGCTCTATTGAGCTGAAA
*
82675563 CAGTAAGCTC
1 CGGTAAGCTC
82675573 ATACGAAGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
22 10 0.20
23 20 0.41
25 11 0.22
26 8 0.16
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (23 bp):
CGGTAAGCTCTATTGAGCTGAAA
Found at i:82675571 original size:22 final size:22
Alignment explanation
Indices: 82675514--82675572 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 22
82675504 CTTGAGCTGA
82675514 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
82675536 TGAA-ATGGTAAGCTCTATTGAGC
1 TGAACA--GTAAGCTCTATTGAGC
82675559 TGAACAGTAAGCTC
1 TGAACAGTAAGCTC
82675573 ATACGAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.03
22 12 0.35
23 20 0.59
24 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATTGAGC
Found at i:82675624 original size:23 final size:22
Alignment explanation
Indices: 82675502--82675625 Score: 92
Period size: 23 Copynumber: 5.4 Consensus size: 22
82675492 CGGTAAGCTC
82675502 CTCT-TGAGCTGATGAACAGTAAG
1 CTCTATGAGCTGA--AACAGTAAG
**
82675525 CTCTATTGAGCTGAAATGGTAAG
1 CTCTA-TGAGCTGAAACAGTAAG
82675548 CTCTATTGAGCTG-AACAGTAAG
1 CTCTA-TGAGCTGAAACAGTAAG
* * *
82675570 CTCATACGAAG-TAAAACTGTAAG
1 CTC-TATG-AGCTGAAACAGTAAG
* *
82675593 CTCCAATGAGCTGAAACAATAAG
1 CT-CTATGAGCTGAAACAGTAAG
82675616 CTCTTATGAG
1 CTC-TATGAG
82675626 TTGATATATC
Statistics
Matches: 80, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
22 15 0.19
23 56 0.70
24 1 0.01
25 8 0.10
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (22 bp):
CTCTATGAGCTGAAACAGTAAG
Found at i:82679882 original size:18 final size:19
Alignment explanation
Indices: 82679848--82679891 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
82679838 GATACAAATT
82679848 ATATATGATGCAAATGAAA
1 ATATATGATGCAAATGAAA
*
82679867 ATATATG-TGCATATGAAA
1 ATATATGATGCAAATGAAA
82679885 AGTATAT
1 A-TATAT
82679892 TCGGCCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
ATATATGATGCAAATGAAA
Found at i:82683273 original size:11 final size:10
Alignment explanation
Indices: 82683241--82683294 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
82683231 CATGAGATTT
82683241 TGATAT-ACA
1 TGATATGACA
*
82683250 TGATTTGACA
1 TGATATGACA
82683260 TGATATGCACA
1 TGATATG-ACA
*
82683271 TGATATG-TA
1 TGATATGACA
82683280 TGATATGCACA
1 TGATATG-ACA
82683291 TGAT
1 TGAT
82683295 GTATCCATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:82683370 original size:25 final size:25
Alignment explanation
Indices: 82683342--82683436 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
82683332 GAGAAAGTGC
*
82683342 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTATGCCCCAGTTTATCA
* * *
82683367 AAAAGGTCTTTGCCTCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
82683392 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
82683415 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
82683437 ATATGGTAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:82683436 original size:50 final size:50
Alignment explanation
Indices: 82683342--82683436 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
82683332 GAGAAAGTGC
* **
82683342 AAAAGGGCTATGCCCCAGTTTATCGAAAAGGTCTTTGCCTCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCGAAAAGGGCTAGGCCTCAGTTTATCA
* *
82683392 AAAAGGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTATCGAAAAG-GGCTAGGCCT-CAGTT
82683437 ATATGGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 11 0.29
50 22 0.58
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTATCGAAAAGGGCTAGGCCTCAGTTTATCA
Found at i:82683707 original size:31 final size:31
Alignment explanation
Indices: 82683632--82683708 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
82683622 TGTTTACAGT
* *
82683632 AAAGGCTTTGGGCCAGTGATATGAATAATGA
1 AAAGGCTTTGGCCCACTGATATGAATAATGA
* * *
82683663 AAAAGATTTGGCCCACTGATATGAATAATTA
1 AAAGGCTTTGGCCCACTGATATGAATAATGA
*
82683694 AAAGGCTTCGGCCCA
1 AAAGGCTTTGGCCCA
82683709 AGATATGTTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTTGGCCCACTGATATGAATAATGA
Found at i:82683714 original size:30 final size:31
Alignment explanation
Indices: 82683649--82683715 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
82683639 TTGGGCCAGT
* *
82683649 GATATGAATAATGAAAAAGATTTGGCCCACT
1 GATATGAATAATGAAAAAGATTCGGCCCACA
* * *
82683680 GATATGAATAATTAAAAGGCTTCGGCCCA-A
1 GATATGAATAATGAAAAAGATTCGGCCCACA
82683710 GATATG
1 GATATG
82683716 TTGAGATTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (31 bp):
GATATGAATAATGAAAAAGATTCGGCCCACA
Found at i:82691322 original size:25 final size:25
Alignment explanation
Indices: 82691253--82691322 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
82691243 GAGGAAGTGC
* *
82691253 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
82691278 AAAAGGTCTTTGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
82691303 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82691323 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:82696080 original size:20 final size:20
Alignment explanation
Indices: 82696001--82696080 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
82695991 CGTCTCAACT
* *
82696001 GTAATTCATTCATATAACCA
1 GTAATTCATCCATATAAACA
* *
82696021 GTAGTTCATCCGTATAAACA
1 GTAATTCATCCATATAAACA
* * *
82696041 GTAGTTTAT-TAGTA-ATAACA
1 GTAATTCATCCA-TATA-AACA
82696061 GTAATTCATCCATATAAACA
1 GTAATTCATCCATATAAACA
82696081 CATATCTTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
19 1 0.02
20 43 0.93
21 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (20 bp):
GTAATTCATCCATATAAACA
Found at i:82696286 original size:23 final size:23
Alignment explanation
Indices: 82696224--82696352 Score: 109
Period size: 23 Copynumber: 5.5 Consensus size: 23
82696214 GAGCCATGAT
* *
82696224 CAGTAAGCTTCTGTTGAGTTGAAGAA
1 CAGTAAGC-TCTATTGAGCTG-A-AA
*
82696250 CAGTAAGCTTTATTGAGCTGAAA
1 CAGTAAGCTCTATTGAGCTGAAA
* *
82696273 CGGTAAGCTCTATTGACCTG-AA
1 CAGTAAGCTCTATTGAGCTGAAA
*
82696295 CAGTAAGCTC-ATACGAGCTGAAA
1 CAGTAAGCTCTAT-TGAGCTGAAA
* * * *
82696318 CGGTAAGCTCCAATGAGTTGAAAA
1 CAGTAAGCTCTATTGAGCTG-AAA
82696342 CAGTAAGCTCT
1 CAGTAAGCTCT
82696353 TACGAGCTGT
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 35 0.42
24 14 0.17
25 9 0.11
26 8 0.10
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTGAAA
Found at i:82696359 original size:47 final size:47
Alignment explanation
Indices: 82696238--82696361 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 47
82696228 AAGCTTCTGT
* * *
82696238 TGAGTTGAAGAACAGTAAGCT-TTATTGAGCTGAAACGGTAAGCTCTAT
1 TGAGTTGAA-AACAGTAAGCTCTTA-CGAGCTGAAACGGTAAGCTCCAA
** *
82696286 TGACCTG--AACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCCAA
1 TGAGTTGAAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
82696331 TGAGTTGAAAACAGTAAGCTCTTACGAGCTG
1 TGAGTTGAAAACAGTAAGCTCTTACGAGCTG
82696362 TGGTGAGTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
45 36 0.56
46 2 0.03
47 21 0.33
48 5 0.08
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (47 bp):
TGAGTTGAAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
Found at i:82696528 original size:23 final size:24
Alignment explanation
Indices: 82696494--82696552 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
82696484 ACATTTAATG
*
82696494 ATCA-ATA-ATTCAATT-TATCAA
1 ATCATATACATTCAATTCAATCAA
*
82696515 ATCATATACATTCAATTCAATTAA
1 ATCATATACATTCAATTCAATCAA
82696539 AT-ATATACATTCAA
1 ATCATATACATTCAA
82696553 ATACTCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 20 0.61
24 6 0.18
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (24 bp):
ATCATATACATTCAATTCAATCAA
Found at i:82700551 original size:18 final size:18
Alignment explanation
Indices: 82700528--82700565 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82700518 AAATGTAATT
**
82700528 TTAACATTTATGTAACCA
1 TTAACATTTACATAACCA
82700546 TTAACATTTACATAACCA
1 TTAACATTTACATAACCA
82700564 TT
1 TT
82700566 TCAATCCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (18 bp):
TTAACATTTACATAACCA
Found at i:82701026 original size:21 final size:21
Alignment explanation
Indices: 82700995--82701051 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
82700985 TGCTAAATGA
* *
82700995 AAACCCGTAAGGGTTGAATGG
1 AAACCCATAAGGGTTGAACGG
* * * *
82701016 AAGCTCATAAGAGCTGAACGG
1 AAACCCATAAGGGTTGAACGG
82701037 AAACCCATAAGGGTT
1 AAACCCATAAGGGTT
82701052 AAACTAAAAC
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.18
Consensus pattern (21 bp):
AAACCCATAAGGGTTGAACGG
Found at i:82704712 original size:53 final size:53
Alignment explanation
Indices: 82704530--82704736 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
82704520 ATTAGGGTTT
* * * *
82704530 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
82704584 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGT-AAGTTC-ATAAGGC
* * *
82704639 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
* * *
82704692 AAGGGTACCACGTAAGACCATGTCAA-GCAATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGC-ATGGCAATGGTAAGTT
82704737 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 38 0.31
55 40 0.33
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
Found at i:82707943 original size:40 final size:38
Alignment explanation
Indices: 82707894--82708033 Score: 127
Period size: 40 Copynumber: 3.5 Consensus size: 38
82707884 TGCTGGAAAT
* * *
82707894 TATAACCGGGTTAAGACCCGAAGGTAATTGTGCTAGTAG
1 TATATCCGGGCTAAGACCCGAAGG-AATTGTGCAAGTAG
* *
82707933 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TATATCCGGGCTAAGACCCGAAGGAATT-GTGCAAGTAG
* * * *
82707973 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGG-AATTGTGCAAGTAG
* *
82708013 TGATATCCGGGTTAAGTCCCG
1 T-ATATCCGGGCTAAGACCCG
82708034 TAGGCCTTGG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
39 4 0.05
40 77 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGAATTGTGCAAGTAG
Found at i:82711870 original size:40 final size:40
Alignment explanation
Indices: 82711815--82711984 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
82711805 AACATTGGAA
82711815 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82711855 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
82711895 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
82711934 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
82711975 CTATATCCGG
1 ATATATCCGG
82711985 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:82719336 original size:40 final size:40
Alignment explanation
Indices: 82719234--82719417 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
82719224 AAATTGAATG
* * * * * *
82719234 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
82719274 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
82719314 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
82719354 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
82719394 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
82719418 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:82719442 original size:80 final size:80
Alignment explanation
Indices: 82719274--82719462 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
82719264 GCTGGAAATT
* * *
82719274 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
82719339 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
82719354 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
82719417 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
82719434 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
82719463 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Done.