Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 269 of 425
Found at i:82733251 original size:55 final size:55
Alignment explanation
Indices: 82733167--82733276 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
82733157 GAAACGGTGA
82733167 AAGCCGAAAATAGTTCTGTCGATGCCACACGGGCGTGTGGTTGTGGCAGTACACG
1 AAGCCGAAAATAGTTCTGTCGATGCCACACGGGCGTGTGGTTGTGGCAGTACACG
*
82733222 AAGCCGAAAATGGTTCTGTCGATGCCACACGGGCGTGTGGTTGTGGCAGTACACG
1 AAGCCGAAAATAGTTCTGTCGATGCCACACGGGCGTGTGGTTGTGGCAGTACACG
82733277 GCCGTGTGAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.23, C:0.22, G:0.34, T:0.22
Consensus pattern (55 bp):
AAGCCGAAAATAGTTCTGTCGATGCCACACGGGCGTGTGGTTGTGGCAGTACACG
Found at i:82735703 original size:20 final size:20
Alignment explanation
Indices: 82735665--82735703 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82735655 TGCCATGATA
* *
82735665 TATCCCATCGCAAATATCCT
1 TATCCCATCGAAAACATCCT
*
82735685 TATCCTATCGAAAACATCC
1 TATCCCATCGAAAACATCC
82735704 CCCACGCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.28
Consensus pattern (20 bp):
TATCCCATCGAAAACATCCT
Found at i:82738785 original size:26 final size:26
Alignment explanation
Indices: 82738755--82738815 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
82738745 AGCTATGATT
82738755 AGTAAGCTCCTCCTGAGCTGATGGAC
1 AGTAAGCTCCTCCTGAGCTGATGGAC
82738781 AGTAAGCTCCTCCTGAGCTGATGGAC
1 AGTAAGCTCCTCCTGAGCTGATGGAC
82738807 AGTAAGCTC
1 AGTAAGCTC
82738816 TATTGAGCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (26 bp):
AGTAAGCTCCTCCTGAGCTGATGGAC
Found at i:82738863 original size:24 final size:23
Alignment explanation
Indices: 82738805--82738873 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
82738795 GAGCTGATGG
82738805 ACAGTAAGCTCTATTGAGCTG-AA
1 ACAGTAAGCTCTA-TGAGCTGAAA
** *
82738828 ATGGTAAACTCTGATGAGCTGAAA
1 ACAGTAAGCTCT-ATGAGCTGAAA
*
82738852 ACAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTC-TATGAGCTGA
82738874 TATATCGGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 16 0.44
24 19 0.53
25 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTATGAGCTGAAA
Found at i:82738935 original size:30 final size:30
Alignment explanation
Indices: 82738894--82738960 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
82738884 AGCTCATATG
*
82738894 AATTTA-CACATTCAGCCTTCGATCTATTC
1 AATTTAGCACATTCAGCATTCGATCTATTC
* *
82738923 AATTTAGCACATTCAGCATTTGGTCTATTC
1 AATTTAGCACATTCAGCATTCGATCTATTC
82738953 AATTTAGC
1 AATTTAGC
82738961 CTATAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 6 0.18
30 28 0.82
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.39
Consensus pattern (30 bp):
AATTTAGCACATTCAGCATTCGATCTATTC
Found at i:82744222 original size:46 final size:46
Alignment explanation
Indices: 82744070--82744286 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
82744060 TGTGTGAACA
* * * * *
82744070 AGTGTAAGACATGGCTGGGACATGCATCGGCCAC-ATTATGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * *
82744116 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
82744164 AGTGTAATACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * * * *
82744210 AGTGCAAGACATGTCTAGGACATGCGTCGG-CTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
*
82744256 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
82744287 ACACTTTACC
Statistics
Matches: 141, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 68 0.48
47 42 0.30
48 27 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:82744285 original size:94 final size:94
Alignment explanation
Indices: 82744070--82744286 Score: 239
Period size: 94 Copynumber: 2.3 Consensus size: 94
82744060 TGTGTGAACA
* * * * *
82744070 AGTGTAAGACATGGCTGGGACATGCATCGGCCACATTATGAAAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCCAGTGCAAGACCATGTCTAG
82744135 GACATGGCATCGGCATTGAGACGAGTGCT
66 GACATGGCATCGGCATTGAGACGAGTGCT
* * *
82744164 AGTGTAATACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCCAGTGCAAGA-CATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAAAGCCAGTGCAAGACCATGTCTA
* *
82744227 GGACAT-GCGTCGGC-TATGAGATGA-TAG-T
65 GGACATGGCATCGGCAT-TGAGACGAGT-GCT
*
82744255 CAGTGTAAGACCATGTCTAGGACATGGCATCG
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCG
82744287 ACACTTTACC
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
91 3 0.03
92 23 0.22
93 26 0.25
94 52 0.50
95 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCCAGTGCAAGACCATGTCTAG
GACATGGCATCGGCATTGAGACGAGTGCT
Found at i:82747008 original size:54 final size:54
Alignment explanation
Indices: 82746941--82747091 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
82746931 TACCCTACAA
* *
82746941 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
82746995 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
82747049 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
82747092 CTGTAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:82747029 original size:81 final size:81
Alignment explanation
Indices: 82746938--82747098 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
82746928 TTCTACCCTA
* * *
82746938 CAAGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
*
82747003 TGGTAATTTTGTAAAC
66 TGGTAATTCTGTAAAC
* * * * * *
82747019 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
82747084 TGGTAATTCTGTAAA
66 TGGTAATTCTGTAAA
82747099 TTGAAGGTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTCTGTAAAC
Found at i:82747098 original size:27 final size:27
Alignment explanation
Indices: 82746938--82747091 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
82746928 TTCTACCCTA
*
82746938 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
82746965 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
82746992 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
82747019 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
82747046 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
82747073 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
82747092 CTGTAAATTG
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:82747117 original size:81 final size:81
Alignment explanation
Indices: 82746949--82747118 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
82746939 AAGGGTATTT
* * *
82746949 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
***
82747014 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
82747030 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
**
82747095 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
82747111 CGGTAATT
1 CGGTAATT
82747119 CTGTAAACTG
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 69 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:82747348 original size:27 final size:27
Alignment explanation
Indices: 82747086--82747326 Score: 310
Period size: 27 Copynumber: 8.9 Consensus size: 27
82747076 GGGTATTTTG
* * *
82747086 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82747113 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
82747140 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82747167 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
82747194 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82747221 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
82747248 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
**
82747275 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
82747302 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA
82747327 TGGTAATTTT
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 182 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:82747348 original size:54 final size:54
Alignment explanation
Indices: 82747085--82747334 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
82747075 AGGGTATTTT
* * **
82747085 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82747139 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82747193 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82747247 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
82747301 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
82747335 TTACAAGTCG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:82747348 original size:81 final size:81
Alignment explanation
Indices: 82747084--82747334 Score: 364
Period size: 81 Copynumber: 3.1 Consensus size: 81
82747074 AAGGGTATTT
* * * * *
82747084 TGGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
82747149 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
82747165 TAGTAATTCTGTAAA-CTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTC
1 TGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTC
82747228 TGTAAA-CTGAGGGTAAAA
64 TGTAAATC-GAGGGTAAAA
*
82747246 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
82747311 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
82747327 TGGTAATT
1 TGGTAATT
82747335 TTACAAGTCG
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:82750864 original size:54 final size:54
Alignment explanation
Indices: 82750797--82750947 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
82750787 CTACCCTACA
* *
82750797 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
82750851 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
82750905 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
82750948 CTGTAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:82750896 original size:81 final size:81
Alignment explanation
Indices: 82750796--82750954 Score: 228
Period size: 81 Copynumber: 2.0 Consensus size: 81
82750786 TCTACCCTAC
* * *
82750796 AGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTG
1 AGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTG
*
82750861 GTAATTTTGTAAACCA
66 GTAATTCTGTAAACCA
* * * * * *
82750877 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTG
1 AGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTG
82750942 GTAATTCTGTAAA
66 GTAATTCTGTAAA
82750955 TTGAAGGTAA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTG
GTAATTCTGTAAACCA
Found at i:82750954 original size:27 final size:27
Alignment explanation
Indices: 82750796--82750947 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
82750786 TCTACCCTAC
* *
82750796 AGGGTATTTCGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
82750823 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
82750850 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
82750877 AGGGTATTTTAGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
82750904 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
82750931 AGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATT
82750948 CTGTAAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:82750973 original size:81 final size:81
Alignment explanation
Indices: 82750805--82750974 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
82750795 CAGGGTATTT
* * *
82750805 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
***
82750870 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
82750886 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
**
82750951 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
82750967 CGGTAATT
1 CGGTAATT
82750975 CTGTAAACTG
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 69 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:82751204 original size:27 final size:27
Alignment explanation
Indices: 82750942--82751182 Score: 310
Period size: 27 Copynumber: 8.9 Consensus size: 27
82750932 GGGTATTTTG
* * *
82750942 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82750969 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
82750996 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82751023 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
82751050 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
82751077 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
82751104 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
**
82751131 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
82751158 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA
82751183 TGGTAATTTT
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 182 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:82751204 original size:54 final size:54
Alignment explanation
Indices: 82750941--82751190 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
82750931 AGGGTATTTT
* * **
82750941 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82750995 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82751049 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
82751103 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
82751157 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
82751191 TTACAAGTCG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:82751204 original size:81 final size:81
Alignment explanation
Indices: 82750940--82751190 Score: 364
Period size: 81 Copynumber: 3.1 Consensus size: 81
82750930 AAGGGTATTT
* * * * *
82750940 TGGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
82751005 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
82751021 TAGTAATTCTGTAAA-CTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTC
1 TGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTC
82751084 TGTAAA-CTGAGGGTAAAA
64 TGTAAATC-GAGGGTAAAA
*
82751102 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
82751167 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
82751183 TGGTAATT
1 TGGTAATT
82751191 TTACAAGTCG
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:82756654 original size:49 final size:50
Alignment explanation
Indices: 82756590--82756715 Score: 157
Period size: 50 Copynumber: 2.5 Consensus size: 50
82756580 CTGGTACGCA
* ** *
82756590 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAACAGTCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TCTAATACACG
* * * *
82756639 TAGTAGCTTGGACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATCTAATACACG
82756689 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
82756716 TTGATCATAG
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
49 27 0.42
50 34 0.52
51 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATCTAATACACG
Found at i:82759846 original size:41 final size:41
Alignment explanation
Indices: 82759801--82759918 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82759791 TGAAAGATAA
82759801 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82759842 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82759872 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82759913 ATGTAG
1 ATGTAG
82759919 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82759857 original size:71 final size:71
Alignment explanation
Indices: 82759769--82759932 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82759759 GAGATGTATC
82759769 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82759834 AGGACA
66 AGGACA
82759840 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82759905 AGGACA
66 AGGACA
82759911 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82759933 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82766893 original size:40 final size:39
Alignment explanation
Indices: 82766848--82767054 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
82766838 CGGAATACAA
*
82766848 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82766888 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82766928 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82766968 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
82767008 CCGGATA-AATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82767047 CCGGATAT
1 CCGGATAT
82767055 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 33 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82766988 original size:80 final size:80
Alignment explanation
Indices: 82766848--82767053 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
82766838 CGGAATACAA
* *
82766848 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
82766913 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
82766928 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
*
82766991 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** ** * *
82767008 CCGGATA-AATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
82767054 TCATTCAATT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 2 0.02
79 32 0.30
80 73 0.68
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:82773973 original size:93 final size:93
Alignment explanation
Indices: 82773861--82774031 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82773851 GCCCATAAGT
* *
82773861 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82773926 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82773954 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82774019 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82774032 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82774047 original size:46 final size:46
Alignment explanation
Indices: 82773853--82774033 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
82773843 TGTAACCCGC
* * *
82773853 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
82773899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
82773949 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
82773992 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
82774034 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:82777666 original size:40 final size:39
Alignment explanation
Indices: 82777621--82777827 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
82777611 CGGAATACAA
* *
82777621 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
82777661 CCGGATCTAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
82777701 CCGG-TTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
82777740 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
82777780 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACT-GCACAAATGCCTTCGGGTCTTAGC
82777820 CCGGATAT
1 CCGGATAT
82777828 CATTCAATTG
Statistics
Matches: 142, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 37 0.26
40 104 0.73
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACAACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82777739 original size:79 final size:80
Alignment explanation
Indices: 82777621--82777825 Score: 243
Period size: 79 Copynumber: 2.6 Consensus size: 80
82777611 CGGAATACAA
* * *
82777621 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATCTA-ACAACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATCTAGAC-ACTAGCACAAAT
*
82777685 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * *
82777701 CCGG-TTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATCTAGACACTAGCACAAATG
*
82777765 CCTTCGGGTCTTAAC
66 CCTTCGGGTATTAAC
** * ** * *
82777780 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
82777826 ATCATTCAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
79 68 0.64
80 38 0.36
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATCTAGACACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:82781372 original size:68 final size:69
Alignment explanation
Indices: 82781300--82781496 Score: 281
Period size: 70 Copynumber: 2.8 Consensus size: 69
82781290 ACACCCTGTA
* * * * *
82781300 GTAGCTAGGTCACATGTGTGATACGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
82781363 TAAAT
65 TAAAT
*
82781368 GTAGCTAGGTCGCATGCGTGATCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAGA
82781433 TAAAT
65 TAAAT
*
82781438 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
82781497 AGACAAATCG
Statistics
Matches: 119, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
67 3 0.03
68 23 0.19
69 1 0.01
70 55 0.46
71 37 0.31
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATACAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
AAAT
Found at i:82781410 original size:40 final size:40
Alignment explanation
Indices: 82781366--82781482 Score: 94
Period size: 40 Copynumber: 3.1 Consensus size: 40
82781356 TGAAAGATAA
82781366 ATGTAGCTAGGTCGCATGCGTGATCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATCCAAGTGAAGGACACC
* * * * *
82781406 ATGTAGAC-AAG-AG-A-GC-T-A--C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATCCAAGTGAAGGACACC
82781436 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGA-TCCAAGTGAAGGACACC
82781477 ATGTAG
1 ATGTAG
82781483 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 25
0.61 0.11 0.28
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 2 0.04
36 1 0.02
37 2 0.04
38 2 0.04
39 1 0.02
40 16 0.30
41 7 0.13
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (40 bp):
ATGTAGCTAGGTCGCATGCGTGATCCAAGTGAAGGACACC
Found at i:82781423 original size:70 final size:71
Alignment explanation
Indices: 82781334--82781496 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
82781324 GAGATGTATC
82781334 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGA-TCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82781398 AGGACA
66 AGGACA
82781404 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82781469 AGGACA
66 AGGACA
82781475 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82781497 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 55 0.60
71 37 0.40
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82783297 original size:15 final size:15
Alignment explanation
Indices: 82783250--82783305 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
82783240 CAAGAAAATC
*
82783250 GAATAAATAAATCCA
1 GAATAAAGAAATCCA
*
82783265 -AGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
82783280 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
82783295 GAATAAAGAAA
1 GAATAAAGAAA
82783306 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:82786842 original size:29 final size:28
Alignment explanation
Indices: 82786808--82786910 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
82786798 TAATCGTTCA
82786808 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
82786837 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
82786866 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
82786895 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82786911 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:82794920 original size:29 final size:28
Alignment explanation
Indices: 82794886--82794988 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
82794876 TAATCGTTCA
82794886 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
82794915 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
82794944 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
82794973 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
82794989 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:82797785 original size:50 final size:49
Alignment explanation
Indices: 82797665--82797794 Score: 172
Period size: 50 Copynumber: 2.6 Consensus size: 49
82797655 CTGGTCCGCA
* * ** *
82797665 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
82797714 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
*
82797764 TAGTAGCCTGTACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
82797795 TCACAGTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
49 29 0.40
50 39 0.54
51 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:82805394 original size:40 final size:40
Alignment explanation
Indices: 82805338--82805505 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
82805328 CAATTGAATG
* *
82805338 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
82805379 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * *
82805418 CTATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
82805458 ATATCCTGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
82805498 ATATCCGG
1 ATATCCGG
82805506 TTGTATCCGA
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
39 8 0.07
40 95 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:82805472 original size:80 final size:79
Alignment explanation
Indices: 82805339--82805489 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 79
82805329 AATTGAATGA
* *
82805339 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCAT
82805404 TCGTGCAAGTTGTTC
65 TCGTGCAAGTTGTTC
* * *
82805419 TATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCTGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGCA
82805483 TTCGTGC
64 TTCGTGC
82805490 GTGTGGTTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
79 2 0.03
80 61 0.95
81 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (79 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGTTC
Found at i:82805503 original size:80 final size:79
Alignment explanation
Indices: 82805338--82805505 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
82805328 CAATTGAATG
* *
82805338 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
82805403 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * * *
82805418 CTATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCTGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
82805482 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
82805498 ATATCCGG
1 ATATCCGG
82805506 TTGTATCCGA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:82811364 original size:39 final size:40
Alignment explanation
Indices: 82811266--82811448 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
82811256 GAATGATGTT
* * *
82811266 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TC
* *
82811306 TGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTC
* *
82811346 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* * *
82811385 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
82811425 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
82811449 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.30
40 75 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:82811470 original size:79 final size:79
Alignment explanation
Indices: 82811317--82811471 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
82811307 GGACTAAGAT
* * **
82811317 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
82811382 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
82811396 CCGAAGGCATTTGTGCGAGCTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGCTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
82811459 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
82811472 ATTCCGAAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:82815472 original size:15 final size:16
Alignment explanation
Indices: 82815452--82815481 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82815442 CGAATAGCAT
82815452 CGTAC-TTACTCACAA
1 CGTACTTTACTCACAA
82815467 CGTACTTTACTCACA
1 CGTACTTTACTCACA
82815482 CTTCATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (16 bp):
CGTACTTTACTCACAA
Found at i:82821275 original size:39 final size:38
Alignment explanation
Indices: 82821228--82821356 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 38
82821218 GTATGAGATT
82821228 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * * *
82821266 GAATAATATCCGGACATGAGATTCGTAGGCTATATGCTA
1 GAA-AATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
82821305 GAAATATATCCGGACTTGAGGTCCGCAGGCTACATGCTG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTG
82821344 GAAAAATATCCGG
1 G-AAAATATCCGG
82821357 GTTAAAGACC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.05
39 71 0.91
40 3 0.04
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (38 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:82821374 original size:78 final size:76
Alignment explanation
Indices: 82821228--82821382 Score: 179
Period size: 78 Copynumber: 2.0 Consensus size: 76
82821218 GTATGAGATT
* * * * *
82821228 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAATAATATCCGGACATGAGATTCGTA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACTCGCA
*
82821293 GGCTATATGCTA
66 GGCT-TACGCTA
* **
82821305 GAAATATATCCGGACTTGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGG-GTTAAAGAC-CT
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACTC-
82821368 GCAGGCTTACGCTA
63 GCAGGCTTACGCTA
82821382 G
1 G
82821383 TAATGTATTC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
77 13 0.20
78 53 0.80
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACTCGCA
GGCTTACGCTA
Found at i:82822468 original size:27 final size:27
Alignment explanation
Indices: 82822438--82822578 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
82822428 GTGACTAAGT
*
82822438 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
82822465 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
82822492 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
82822519 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
82822546 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
82822573 CACCAG
1 CACCAG
82822579 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.10
27 87 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:82822520 original size:54 final size:54
Alignment explanation
Indices: 82822438--82822578 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
82822428 GTGACTAAGT
* *
82822438 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
82822492 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
82822546 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
82822579 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:82822704 original size:26 final size:27
Alignment explanation
Indices: 82822675--82822750 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
82822665 CAAAATTAAT
*
82822675 CCTAGGGGTATAACAGTAATTTTGC-A
1 CCTAGGGGTATAACAGTAATTTTCCAA
82822701 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTTCCA-A
* * *
82822729 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
82822751 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 24 0.55
28 20 0.45
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCCAA
Found at i:82824258 original size:25 final size:26
Alignment explanation
Indices: 82824191--82824296 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82824181 TGAAATTCCC
82824191 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82824217 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82824243 ATCAT-GAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82824267 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
82824293 ATCA
1 ATCA
82824297 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
24 10 0.13
25 27 0.36
26 38 0.51
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82824278 original size:50 final size:52
Alignment explanation
Indices: 82824191--82824296 Score: 180
Period size: 50 Copynumber: 2.1 Consensus size: 52
82824181 TGAAATTCCC
82824191 ATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATT
* *
82824243 ATCAT-GAACATTTACCTAA-CCATTATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATT
82824293 ATCA
1 ATCA
82824297 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 33 0.63
51 14 0.27
52 5 0.10
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATT
Found at i:82832505 original size:40 final size:40
Alignment explanation
Indices: 82832449--82832616 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
82832439 CAATTGAATG
* *
82832449 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
82832490 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
82832529 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
82832569 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
82832609 ATATCCGG
1 ATATCCGG
82832617 TTGTATCCGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:82832582 original size:80 final size:79
Alignment explanation
Indices: 82832449--82832616 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
82832439 CAATTGAATG
* *
82832449 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
82832514 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
82832529 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
82832593 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
82832609 ATATCCGG
1 ATATCCGG
82832617 TTGTATCCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:82840168 original size:40 final size:40
Alignment explanation
Indices: 82840078--82840245 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
82840068 CAATTGAATG
* *
82840078 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG--TT
* *
82840119 -TATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* * *
82840158 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* * *
82840198 ATATCCGGGCTAAGACCCGAATGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
82840238 ATATCCGG
1 ATATCCGG
82840246 TTGTATCCGA
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 5 0.05
40 104 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
Found at i:82840211 original size:80 final size:79
Alignment explanation
Indices: 82840078--82840245 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
82840068 CAATTGAATG
* * *
82840078 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
82840143 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * *
82840158 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAATGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
82840222 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
82840238 ATATCCGG
1 ATATCCGG
82840246 TTGTATCCGA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 74 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:82843409 original size:39 final size:39
Alignment explanation
Indices: 82843365--82843439 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
82843355 TATGAGATTG
* *
82843365 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
1 AAAATATCCAGACATGAGATCCACAGGCTATATGCTGGA
* *
82843404 AAAATATTCAGACATGAGATCCGCAGGCTATATGCT
1 AAAATATCCAGACATGAGATCCACAGGCTATATGCT
82843440 AGATGTAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (39 bp):
AAAATATCCAGACATGAGATCCACAGGCTATATGCTGGA
Found at i:82844841 original size:24 final size:24
Alignment explanation
Indices: 82844814--82844876 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
82844804 CTTATTATGT
82844814 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82844838 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
82844862 TTGCACACATAGTGC
1 TCGCACACATAGTGC
82844877 ATTTGAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:82852602 original size:24 final size:24
Alignment explanation
Indices: 82852575--82852637 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
82852565 CTTATTATGT
82852575 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82852599 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82852623 TCGCACACATAGTGC
1 TCGCACACATAGTGC
82852638 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:82861555 original size:27 final size:28
Alignment explanation
Indices: 82861498--82861567 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
82861488 AAATTTGTAC
**
82861498 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
82861526 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
82861553 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82861568 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:82873494 original size:40 final size:40
Alignment explanation
Indices: 82873424--82873599 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
82873414 TGTACGGATA
* * * *
82873424 AAGTCCCGAAGGC-TTTATGCTAAGTGACTAAATCCGGACT
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCT
*
82873464 AAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCT
1 AAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCT
*
82873504 AAG-CCCGAAGGCA-TTGTGCGAGTTACTAAATCCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCT
82873542 AAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCT
*
82873582 ATGTCCCGAAGGCATTTG
1 AAGTCCCGAAGGCATTTG
82873600 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
38 26 0.21
39 19 0.16
40 67 0.55
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCT
Found at i:82873558 original size:78 final size:79
Alignment explanation
Indices: 82873424--82873597 Score: 228
Period size: 78 Copynumber: 2.2 Consensus size: 79
82873414 TGTACGGATA
* * * *
82873424 AAGTCCCGAAGGCTTTATGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT
1 AAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT
*
82873489 TACTA-ATTCCGGGCT
65 TACTATA-ACCGGGCT
**
82873504 AAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGT
1 AAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGT
82873567 TACTATAACCGGGCT
65 TACTATAACCGGGCT
*
82873582 ATGTCCCGAAGGCATT
1 AAGTCCCGAAGGCATT
82873598 TGAACGAGTA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.63
79 27 0.33
80 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
AAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTT
ACTATAACCGGGCT
Found at i:82874401 original size:18 final size:16
Alignment explanation
Indices: 82874378--82874412 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
82874368 AAATCACTAA
82874378 AAATAGTAGAATAGAATT
1 AAATAGT-GAATA-AATT
82874396 AAATAGTGAATAAATT
1 AAATAGTGAATAAATT
82874412 A
1 A
82874413 TGTAAACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (16 bp):
AAATAGTGAATAAATT
Found at i:82876809 original size:13 final size:13
Alignment explanation
Indices: 82876791--82876816 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82876781 TCGACAGGGA
82876791 CATGCCCGTGTGG
1 CATGCCCGTGTGG
82876804 CATGCCCGTGTGG
1 CATGCCCGTGTGG
82876817 GGTGGCTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (13 bp):
CATGCCCGTGTGG
Found at i:82879752 original size:85 final size:85
Alignment explanation
Indices: 82879594--82879764 Score: 207
Period size: 85 Copynumber: 2.0 Consensus size: 85
82879584 AATGCTCCAC
* ** ** * * * * * *
82879594 ATACTTGTGTTGTTGCAGGTATGTCACGGGATCATCTGAAATTTGATTTTGACCTGATCTCTGAT
1 ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCCAAAATTGGATTATGACCTAATATATGAC
* **
82879659 ATTGTCTTATGTATGGTGAA
66 ATTATCTTACCTATGGTGAA
*
82879679 ATACTTGTGTTGTTGTACGTATGTCACAAGATCATCCAAAATTGGATTATGACCTAATATATGAC
1 ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCCAAAATTGGATTATGACCTAATATATGAC
82879744 ATTATCTTACCTATGGTGAA
66 ATTATCTTACCTATGGTGAA
82879764 A
1 A
82879765 GCAAGTCCTA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (85 bp):
ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCCAAAATTGGATTATGACCTAATATATGAC
ATTATCTTACCTATGGTGAA
Found at i:82888828 original size:19 final size:20
Alignment explanation
Indices: 82888804--82888847 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
82888794 AGGCATGTTG
82888804 AGGGGA-CAAAGGAGAAAAA
1 AGGGGATCAAAGGAGAAAAA
* **
82888823 AGGGGATCATAGGAGTGAAA
1 AGGGGATCAAAGGAGAAAAA
82888843 AGGGG
1 AGGGG
82888848 GTTTAAGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.45, C:0.05, G:0.43, T:0.07
Consensus pattern (20 bp):
AGGGGATCAAAGGAGAAAAA
Found at i:82891335 original size:50 final size:50
Alignment explanation
Indices: 82891260--82891636 Score: 341
Period size: 50 Copynumber: 7.5 Consensus size: 50
82891250 TAGGTACGCA
*
82891260 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * * * * * *
82891310 TAGTAGCCTGCGCTTAGTACGACACACGTGACTTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * ** * * ** *
82891360 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTACACG
* *
82891411 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * * * *
82891461 TAGTAGCCTGCACTTAGTGCTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* ** * *
82891511 TAGTAG-CTACACTTAGTACTACACACATGATCGAAGT-T-AA-CGGGTACACA
1 TAGTAGCCTGCACTTAGTACT--ACACATG--CGACCTATCAATCTGGTACACG
** *
82891561 TAGTAGTTTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
82891611 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
82891637 CGTGAATCAC
Statistics
Matches: 255, Mismatches: 61, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
47 3 0.01
48 1 0.00
49 24 0.09
50 170 0.67
51 53 0.21
52 1 0.00
53 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
Found at i:82891454 original size:101 final size:101
Alignment explanation
Indices: 82891310--82891491 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
82891300 CTGGTAAACG
* * * * *
82891310 TAGTAGCCTGCGCTTAGTACGACACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACGACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
82891375 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
* * * *
82891411 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACGACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
*
82891476 AGTGCTACACACGTGA
66 AGTACTACACACGTGA
82891492 CTTAACCATC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACGACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
Found at i:82891609 original size:150 final size:151
Alignment explanation
Indices: 82891252--82891641 Score: 656
Period size: 150 Copynumber: 2.6 Consensus size: 151
82891242 AAAGCTCTTA
* *
82891252 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTAAACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
82891317 CTGCGCTTAGTACGACACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
82891382 CACACGTGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* *
82891403 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
82891468 CTGCACTTAGTGCTACACACGTGACTTAACCATCTGATACACGTAGTAG-CTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
82891532 CACACATGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* * *
82891553 GGTACACATAGTAGTTTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
82891618 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
82891642 ATCACAATGA
Statistics
Matches: 223, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
150 117 0.52
151 106 0.48
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACATGATCGAAGTTAACG
Found at i:82892020 original size:19 final size:20
Alignment explanation
Indices: 82891998--82892037 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
82891988 AGTTATATCG
82891998 TCAAAATAATCACATA-ATA
1 TCAAAATAATCACATATATA
* *
82892017 TCAAATTATTCACATATATA
1 TCAAAATAATCACATATATA
82892037 T
1 T
82892038 ATACTTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (20 bp):
TCAAAATAATCACATATATA
Found at i:82897940 original size:30 final size:29
Alignment explanation
Indices: 82897897--82897960 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
82897887 CAAGTAGCCG
82897897 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
82897926 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
82897956 AAGCT
1 AAGCT
82897961 TCCGATTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:82899505 original size:29 final size:29
Alignment explanation
Indices: 82899411--82899505 Score: 93
Period size: 29 Copynumber: 3.3 Consensus size: 29
82899401 TACTCGATCA
** *
82899411 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
* * * * * *
82899440 CGAACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACATTTCAAGCT
82899469 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
82899498 CGCACACT
1 CGCACACT
82899506 CAATGCCAAT
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
28 2 0.04
29 49 0.96
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:82907363 original size:25 final size:26
Alignment explanation
Indices: 82907331--82907429 Score: 123
Period size: 25 Copynumber: 3.8 Consensus size: 26
82907321 CCTAAGTATG
*
82907331 AAAATTACCATT-TACCTCTAGGTGC
1 AAAATTACCATTATACCCCTAGGTGC
* *
82907356 AATATTACCATTATACCCCTGAGTATG-
1 AAAATTACCATTATACCCCT-AG-GTGC
*
82907383 AAAATTACCATT-TACCCCTAGGTAC
1 AAAATTACCATTATACCCCTAGGTGC
82907408 AAAATTACCATTATACCCCTAG
1 AAAATTACCATTATACCCCTAG
82907430 CGTTAATTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
24 1 0.02
25 25 0.40
26 22 0.35
27 13 0.21
28 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACCATTATACCCCTAGGTGC
Found at i:82907394 original size:52 final size:52
Alignment explanation
Indices: 82907316--82907428 Score: 190
Period size: 52 Copynumber: 2.2 Consensus size: 52
82907306 ATTTACTAAA
* * *
82907316 ATACCCCTAAGTATGAAAATTACCATTTACCTCTAGGTGCAATATTACCATT
1 ATACCCCTAAGTATGAAAATTACCATTTACCCCTAGGTACAAAATTACCATT
*
82907368 ATACCCCTGAGTATGAAAATTACCATTTACCCCTAGGTACAAAATTACCATT
1 ATACCCCTAAGTATGAAAATTACCATTTACCCCTAGGTACAAAATTACCATT
82907420 ATACCCCTA
1 ATACCCCTA
82907429 GCGTTAATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (52 bp):
ATACCCCTAAGTATGAAAATTACCATTTACCCCTAGGTACAAAATTACCATT
Found at i:82907424 original size:26 final size:27
Alignment explanation
Indices: 82907316--82907429 Score: 130
Period size: 26 Copynumber: 4.4 Consensus size: 27
82907306 ATTTACTAAA
* *
82907316 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
* * *
82907343 -TACCTCTAGGT-GCAATATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
*
82907368 ATACCCCT-GAGTATGAAAATTACCATT
1 ATACCCCTAG-GTATCAAAATTACCATT
82907395 -TACCCCTAGGTA-CAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
82907420 ATACCCCTAG
1 ATACCCCTAG
82907430 CGTTAATTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
25 24 0.33
26 36 0.50
27 12 0.17
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (27 bp):
ATACCCCTAGGTATCAAAATTACCATT
Found at i:82907571 original size:28 final size:28
Alignment explanation
Indices: 82907531--82907600 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
82907521 GGAGGAAGCG
82907531 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
82907559 TTCTGGTGGCTCTGCCATAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
82907587 ATCTGGTGACTCTG
1 TTCTGGTGGCTCTG
82907601 TGACAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:82908189 original size:33 final size:33
Alignment explanation
Indices: 82908147--82908210 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
82908137 AAAAGAGATT
82908147 ACCTGATTTCAAAATATCGTGAAACAAGACAAA
1 ACCTGATTTCAAAATATCGTGAAACAAGACAAA
82908180 ACCTGATTTCAAAATATCGTGAAACAAGACA
1 ACCTGATTTCAAAATATCGTGAAACAAGACA
82908211 GCTTCCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (33 bp):
ACCTGATTTCAAAATATCGTGAAACAAGACAAA
Found at i:82915219 original size:27 final size:27
Alignment explanation
Indices: 82915189--82915250 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
82915179 ATTTACTAAA
82915189 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* *
82915216 ATACCCCT-AGGTGCAAATTTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
82915242 ATACCCCTA
1 ATACCCCTA
82915251 GGATTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:82915412 original size:27 final size:26
Alignment explanation
Indices: 82915352--82915440 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
82915342 TGGAGGAAGC
*
82915352 GTTCTGGTGGCTCTGCTACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
82915379 GTTTCTGGTGGCTCTGCCACAATATCT
1 G-TTCTGGTGGCTCTGCCACAATATCT
* **
82915406 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
82915433 GTTCTGGT
1 GTTCTGGT
82915441 AGCCATGCTA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.12
27 32 0.57
28 17 0.30
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:82918938 original size:30 final size:30
Alignment explanation
Indices: 82918902--82918958 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
82918892 CCGAAGTTAG
*
82918902 TTAAATCGCACACTTAGTGCCAAAGCTAGT
1 TTAAATCGCACACTTAGTGACAAAGCTAGT
82918932 TTAAATCGCACACTTAGTGACAAAGCT
1 TTAAATCGCACACTTAGTGACAAAGCT
82918959 TCCGATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (30 bp):
TTAAATCGCACACTTAGTGACAAAGCTAGT
Found at i:82921691 original size:48 final size:48
Alignment explanation
Indices: 82921616--82921907 Score: 485
Period size: 48 Copynumber: 6.1 Consensus size: 48
82921606 CAAGATAAAT
* * *
82921616 AGATATGTATATGTGGTAAAGCGGAATGGCTAATGCGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
82921664 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
82921712 AGATATGTATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
82921760 AGATATGTATATGTGGTAAAGCCGAATGGCTGGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
82921808 AGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
82921856 AGATATTTATATGTGGTAAAGACGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
82921904 AGAT
1 AGAT
82921908 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 229 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:82922087 original size:37 final size:37
Alignment explanation
Indices: 82922037--82922187 Score: 198
Period size: 37 Copynumber: 4.1 Consensus size: 37
82922027 ACATGAAACT
* *
82922037 TGGAAATATATTCCGAGTAAGACCCGAGGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
82922074 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
*
82922111 TGGAGAT-TATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
* * * * *
82922148 TGGAGAT-TTTGTCTGGGAAAGACCCGATAACTACGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
82922185 TGG
1 TGG
82922188 GGACTATTCG
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 3 0.03
37 103 0.97
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:82923140 original size:19 final size:18
Alignment explanation
Indices: 82923102--82923137 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82923092 GATAGTGTGG
82923102 TGATTTTTGACTATTAAA
1 TGATTTTTGACTATTAAA
82923120 TGATTTTTGACTATTAAA
1 TGATTTTTGACTATTAAA
82923138 ATGTGTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (18 bp):
TGATTTTTGACTATTAAA
Found at i:82923146 original size:18 final size:18
Alignment explanation
Indices: 82923102--82923146 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
82923092 GATAGTGTGG
*
82923102 TGATTTTTGACTATTAAA
1 TGATGTTTGACTATTAAA
*
82923120 TGATTTTTGACTATTAAAA
1 TGATGTTTGACTATT-AAA
82923139 TG-TGTTTG
1 TGATGTTTG
82923147 TTGTATTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (18 bp):
TGATGTTTGACTATTAAA
Found at i:82923862 original size:40 final size:40
Alignment explanation
Indices: 82923488--82923853 Score: 579
Period size: 40 Copynumber: 9.2 Consensus size: 40
82923478 TATATAGCCA
* * * *
82923488 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
82923528 GGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
82923568 AGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
82923608 GGCTAAGTTCTGAAGAGCATTCGTGCTAGTGACGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
82923648 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
82923688 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
82923728 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* * * *
82923768 GGCTAAGTTTCAAAGAGCATTCGTGCTAGTAATGTACCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
82923808 GGCTAAGTTCCGAAGAGCATTCGCGCTAGTGATATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
82923848 GGCTAA
1 GGCTAA
82923854 ACCTCGAAGG
Statistics
Matches: 298, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 298 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
Found at i:82923984 original size:29 final size:29
Alignment explanation
Indices: 82923915--82923986 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 29
82923905 TCAACTGAGT
* *
82923915 ACTATGTGTGCCAGATCAGTAGTTGAGGC
1 ACTATGTGTGCGAGATCAGTAATTGAGGC
**
82923944 ACTATGTGTGCGAGATTGGTAATTGAGGC
1 ACTATGTGTGCGAGATCAGTAATTGAGGC
82923973 ACTATGTGTGCGAG
1 ACTATGTGTGCGAG
82923987 CTCTTTAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
ACTATGTGTGCGAGATCAGTAATTGAGGC
Found at i:82923995 original size:29 final size:29
Alignment explanation
Indices: 82923881--82924009 Score: 104
Period size: 29 Copynumber: 4.5 Consensus size: 29
82923871 GCTGGAGTTA
* * * *
82923881 TGAGGCACTGTGTGTGCAAGTTCT-TCAAC
1 TGAGGCACTATGTGTGCGAGATCTGT-AAT
* * * *
82923910 TGA-GTACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGATCTGTAAT
82923938 TGAGGCACTATGTGTGCGAGAT-TGGTAAT
1 TGAGGCACTATGTGTGCGAGATCT-GTAAT
* *
82923967 TGAGGCACTATGTGTGCGAGCTCTTTAAT
1 TGAGGCACTATGTGTGCGAGATCTGTAAT
* *
82923996 CGA-GCGCTATGTGT
1 TGAGGCACTATGTGT
82924010 ACGAAATCAG
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
28 29 0.36
29 51 0.63
30 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGATCTGTAAT
Found at i:82924899 original size:2 final size:2
Alignment explanation
Indices: 82924892--82924924 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82924882 TGATGCTTAT
82924892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82924925 GCATGTGTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82927217 original size:48 final size:48
Alignment explanation
Indices: 82927146--82927621 Score: 815
Period size: 48 Copynumber: 10.1 Consensus size: 48
82927136 GAAGATAAAT
*
82927146 AGATATGTATATGTTGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927194 AGATATGTATATGTGGTGAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927242 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
82927290 AGATATGTATATGTGGTAAAGCCGAATGGCTAA--TG-----TGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927331 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927379 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927427 A-ATATGTATATGTGGTAAAGCCGAATTGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82927474 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
82927522 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
82927570 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
82927618 AGAT
1 AGAT
82927622 GTGTGTATAT
Statistics
Matches: 407, Mismatches: 13, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
41 38 0.09
43 2 0.00
46 2 0.00
47 45 0.11
48 320 0.79
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:82927801 original size:37 final size:37
Alignment explanation
Indices: 82927751--82927901 Score: 207
Period size: 37 Copynumber: 4.1 Consensus size: 37
82927741 ACATGAAACT
82927751 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAAAT-TATGTCCGGGTAAGACCCGATGACTACGTG
82927788 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAAAT-TATGTCCGGGTAAGACCCGATGACTACGTG
* * *
82927825 TGGAGATTATGTTCGGGTAAGACCCGATGGCTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
* * * *
82927862 CGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
82927899 TGG
1 TGG
82927902 GGACTATTCA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 3 0.03
37 101 0.97
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:82932719 original size:27 final size:27
Alignment explanation
Indices: 82932189--82932717 Score: 643
Period size: 27 Copynumber: 19.6 Consensus size: 27
82932179 AAAGTACTCC
82932189 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
82932216 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
82932243 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
82932270 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
82932297 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82932324 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
82932351 C-AGTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * * *
82932378 TGATTTAAAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
82932405 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
82932432 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
82932459 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
82932486 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
82932513 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
82932539 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
82932567 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
82932594 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82932621 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
82932648 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
82932675 TGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82932702 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
82932718 TAAAATACCC
Statistics
Matches: 435, Mismatches: 59, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.01
27 427 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:82936624 original size:372 final size:372
Alignment explanation
Indices: 82935939--82936682 Score: 1452
Period size: 372 Copynumber: 2.0 Consensus size: 372
82935929 AGGTACATCA
82935939 ATGTTAGTAGAGGAAGGATACTAAAGAAAGTTGAAACAACTATTATATTGTGAGATATAAATATG
1 ATGTTAGTAGAGGAAGGATACTAAAGAAAGTTGAAACAACTATTATATTGTGAGATATAAATATG
82936004 TGGTATATTTACTAAATTTTAAAGAAGTAAAAAGTGATAGGGGTAAAACTATGGGATATTCAAAA
66 TGGTATATTTACTAAATTTTAAAGAAGTAAAAAGTGATAGGGGTAAAACTATGGGATATTCAAAA
*
82936069 GTTGATGGGTTAAAGTGTAAATTAAAAAAACTTAAAGGACTAAAATTGTAAATATCCAAAAGTAG
131 GCTGATGGGTTAAAGTGTAAATTAAAAAAACTTAAAGGACTAAAATTGTAAATATCCAAAAGTAG
82936134 AAAGGACATAAATGACAATACAAAATTTGACCATGGGAAAATTGTCATTTAACAAGAAATATAAT
196 AAAGGACATAAATGACAATACAAAATTTGACCATGGGAAAATTGTCATTTAACAAGAAATATAAT
82936199 TTCAGGAAAAATTATCAAAATACCCTTGGATGTGTGAATGAATTGTGGCCATTGGATTTGCTTAG
261 TTCAGGAAAAATTATCAAAATACCCTTGGATGTGTGAATGAATTGTGGCCATTGGATTTGCTTAG
82936264 CCTTAAAGTACAAAATATAAGCCATTAGATTGTAATCATGATGTTAG
326 CCTTAAAGTACAAAATATAAGCCATTAGATTGTAATCATGATGTTAG
82936311 ATGTTAGTAGAGGAAGGATACTAAAGAAAGTTGAAACAACTATTATATTGTGAGATATAAATATG
1 ATGTTAGTAGAGGAAGGATACTAAAGAAAGTTGAAACAACTATTATATTGTGAGATATAAATATG
*
82936376 TGGTATATTTACTAAATTTTAAAGAAGTAAAAAGTGATAGGGGTAAAACTGTGGGATATTCAAAA
66 TGGTATATTTACTAAATTTTAAAGAAGTAAAAAGTGATAGGGGTAAAACTATGGGATATTCAAAA
*
82936441 GCTGATGGGTTAAAGTGTAAATTAAAAAAACTTAAAGGACTAAAATTGTAAATATCCAAAATTAG
131 GCTGATGGGTTAAAGTGTAAATTAAAAAAACTTAAAGGACTAAAATTGTAAATATCCAAAAGTAG
82936506 AAAGGACATAAATGACAATACAAAATTTGACCATGGGAAAATTGTCATTTAACAAGAAATATAAT
196 AAAGGACATAAATGACAATACAAAATTTGACCATGGGAAAATTGTCATTTAACAAGAAATATAAT
*
82936571 TTCAGGAAAAATTATCAACATACCCTTGGATGTGTGAATGAATTGTGGCCATTGGATTTGCTTAG
261 TTCAGGAAAAATTATCAAAATACCCTTGGATGTGTGAATGAATTGTGGCCATTGGATTTGCTTAG
82936636 CCTTAAAGTACAAAATATAAGCCATTAGATTGTAATCATGATGTTAG
326 CCTTAAAGTACAAAATATAAGCCATTAGATTGTAATCATGATGTTAG
82936683 TGATAGTTTA
Statistics
Matches: 368, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
372 368 1.00
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (372 bp):
ATGTTAGTAGAGGAAGGATACTAAAGAAAGTTGAAACAACTATTATATTGTGAGATATAAATATG
TGGTATATTTACTAAATTTTAAAGAAGTAAAAAGTGATAGGGGTAAAACTATGGGATATTCAAAA
GCTGATGGGTTAAAGTGTAAATTAAAAAAACTTAAAGGACTAAAATTGTAAATATCCAAAAGTAG
AAAGGACATAAATGACAATACAAAATTTGACCATGGGAAAATTGTCATTTAACAAGAAATATAAT
TTCAGGAAAAATTATCAAAATACCCTTGGATGTGTGAATGAATTGTGGCCATTGGATTTGCTTAG
CCTTAAAGTACAAAATATAAGCCATTAGATTGTAATCATGATGTTAG
Found at i:82938845 original size:35 final size:35
Alignment explanation
Indices: 82938792--82938995 Score: 115
Period size: 35 Copynumber: 5.6 Consensus size: 35
82938782 GGTTATCTAC
* ** *
82938792 AGGTCCTTCAGGAAGACACCATGTAAACGATATAT
1 AGGTCCTTCGGGGTGACACCGTGTAAACGATATAT
*
82938827 AGGTCCTTCGGGGTGACACTGTGTAAACTG-TATAT
1 AGGTCCTTCGGGGTGACACCGTGTAAAC-GATATAT
** * * *
82938862 AGGTTATTTAGGGCGATATTGTTTACACAGTGTAAATGATATAT
1 AGG-TCCTTCGGG-G----TG---ACACCGTGTAAACGATATAT
* * ** *
82938906 AGGTCCTTCGAGGCGACACCGTGTAAATAATATAC
1 AGGTCCTTCGGGGTGACACCGTGTAAACGATATAT
* * *
82938941 AAGTCCTTCGGGGTGACACTGTGTAAAC-ATTATAC
1 AGGTCCTTCGGGGTGACACCGTGTAAACGA-TATAT
* *
82938976 AGGTCCTACGGAGTGACACC
1 AGGTCCTTCGGGGTGACACC
82938996 TCGAAAGGGA
Statistics
Matches: 130, Mismatches: 27, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
34 1 0.01
35 92 0.71
36 7 0.05
37 1 0.01
38 1 0.01
41 2 0.02
42 1 0.01
43 6 0.05
44 19 0.15
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (35 bp):
AGGTCCTTCGGGGTGACACCGTGTAAACGATATAT
Found at i:82939913 original size:22 final size:22
Alignment explanation
Indices: 82939888--82939939 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
82939878 GAGAGACCCT
*
82939888 CGTCCTGATGACGCGATAAGGG
1 CGTCCTGATGACGCGATAAAGG
82939910 CGTCCTGATGACGCGATAAAGG
1 CGTCCTGATGACGCGATAAAGG
*
82939932 TGTCCTGA
1 CGTCCTGA
82939940 CAACGTTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (22 bp):
CGTCCTGATGACGCGATAAAGG
Found at i:82946937 original size:40 final size:40
Alignment explanation
Indices: 82946829--82947038 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82946819 CGGGATTTAA
* * * * *
82946829 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82946869 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82946909 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82946949 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82946989 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82947029 CCGGATATAT
1 CCGGATATAT
82947039 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82955072 original size:40 final size:40
Alignment explanation
Indices: 82954964--82955173 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82954954 CGGGATTTAA
* * * * *
82954964 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82955004 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82955044 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82955084 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82955124 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82955164 CCGGATATAT
1 CCGGATATAT
82955174 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82961956 original size:40 final size:39
Alignment explanation
Indices: 82961912--82962134 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 39
82961902 GCTACTCGTT
*
82961912 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGTT-TAGTAACTCGCA
*
82961952 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGG-TTTAGTAACTCGCA
* *
82961992 CAAATGCCTTCGGATCTTAGTCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCG-GTTTAGTAACTCGCA
* *
82962032 CGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGG-TTTAGTAACTCGCA
* * * * *
82962072 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGG-TTTAGTAAC-TCGCA
82962113 CAAA-GCCTTCGGGA-CTTAGCCC
1 CAAATGCCTTC-GGATCTTAGCCC
82962135 AGACATCATT
Statistics
Matches: 165, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
39 3 0.02
40 150 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGATCTTAGCCCGGTTTAGTAACTCGCA
Found at i:82962131 original size:80 final size:79
Alignment explanation
Indices: 82961912--82962134 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 79
82961902 GCTACTCGTT
* * * *
82961912 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAAA-GCCTTCGGGACTTAGCCCG
82961976 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * *
82961992 CAAATGCCTTCGGATCTTAGTCCGAATTTAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCG
82962056 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * *
82962072 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGCCC
82962135 AGACATCATT
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 6 0.05
80 107 0.87
81 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:82977887 original size:46 final size:44
Alignment explanation
Indices: 82977834--82978008 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 44
82977824 TCATTTGTTT
82977834 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATG-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GAA
*
82977880 GAGCTAGTGTAAGACCAGGTCCT-GGACATGGCATCGGCATTGAGACAA
1 GAGCTAGTGTAAGA-CATGT-CTGGGACAT-GCATCGGCATTGAG--AA
* *
82977928 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGATC-TTGAGACTTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG-GCATTGAGA---A
* *
82977975 -AGCCAGTGTAAGACATGTCTGGGACATTCATCGG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG
82978009 TTACGAGATG
Statistics
Matches: 109, Mismatches: 8, Indels: 25
0.77 0.06 0.18
Matches are distributed among these distances:
44 1 0.01
45 5 0.05
46 58 0.53
47 22 0.20
48 23 0.21
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAA
Found at i:82978028 original size:46 final size:46
Alignment explanation
Indices: 82977933--82978049 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
82977923 GACAAGGGCT
* *
82977933 AGTGTAAGACATGTCTGGGACATGCATCGATCTTGAGACTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGATCTCGAGACTGAAGCC
* * *
82977979 AGTGTAAGACATGTCTGGGACATTCATCGGT-TACGAGA-TGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGATCT-CGAGACTGA-AGCC
* *
82978025 AGTGTAAGACCATATTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
82978050 GCATTAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
45 3 0.05
46 45 0.75
47 12 0.20
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGATCTCGAGACTGAAGCC
Found at i:82984852 original size:46 final size:46
Alignment explanation
Indices: 82984684--82984859 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
82984674 TGTAACCCGC
* * * * *
82984684 CCATAAGAGAACCCGGACTCAACTCAACGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
82984730 CCATAAGTGAACTCGAACTGAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* * *
82984780 -C-TCACG-G-ACTCAGACTCAACTCAACGAGCTTGGACATTCACAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
82984823 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82984860 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 4 0.04
45 2 0.02
46 56 0.54
47 23 0.22
48 2 0.02
49 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:82989349 original size:9 final size:9
Alignment explanation
Indices: 82989335--82989372 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
82989325 TGGCTCTAAC
82989335 AGAGTTGAA
1 AGAGTTGAA
82989344 AGAGTTGAA
1 AGAGTTGAA
82989353 AGAGTTGAA
1 AGAGTTGAA
82989362 AGAGTTGAA
1 AGAGTTGAA
82989371 AG
1 AG
82989373 CACAGTTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (9 bp):
AGAGTTGAA
Found at i:82993293 original size:16 final size:16
Alignment explanation
Indices: 82993272--82993311 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
82993262 ACTCGAACTC
*
82993272 AACTCAACGAGTTCGG
1 AACTCAACGAGTTCAG
82993288 AACTCAACGAGTTCAG
1 AACTCAACGAGTTCAG
82993304 AACTCAAC
1 AACTCAAC
82993312 CATCCTAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (16 bp):
AACTCAACGAGTTCAG
Found at i:83001197 original size:30 final size:31
Alignment explanation
Indices: 83001152--83001210 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
83001142 ATTTCATACG
*
83001152 AACTTTGGCAAAATTACA-TTTTTGCCCTTA
1 AACTTTGGCAAAATTACACTTTTGGCCCTTA
* *
83001182 AACTTTTGCATAATTACACTTTTGGCCCT
1 AACTTTGGCAAAATTACACTTTTGGCCCT
83001211 AGGTTCGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (31 bp):
AACTTTGGCAAAATTACACTTTTGGCCCTTA
Found at i:83003682 original size:46 final size:47
Alignment explanation
Indices: 83003527--83003789 Score: 222
Period size: 46 Copynumber: 5.6 Consensus size: 47
83003517 TCACTTGTGT
* * * *
83003527 GAGCTAGTGTAAGA-CATGTCTAGGACATGCATCAGCC-ACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTTCA-GATGA
* * * * * * *
83003573 GAGCTAGTGCAAGACCATGTCTGAGACATGGAATTGGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTCAGATGA
* *
83003621 GGGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTCAGACTTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTTCAGA-TGA
*
83003668 -AGCTAGTGTAAGA-CATGCCTGGGACATGCATCGG--TTACGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTT-C-AGATGA
* ** *
83003713 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGAGAT-A
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTCAGATGA
83003759 TGAGCTAGTGTAAGACCATGTCTGGGACATG
1 -GAGCTAGTGTAAGACCATGTCTGGGACATG
83003790 GCCTTGGCAC
Statistics
Matches: 176, Mismatches: 27, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
44 2 0.01
45 4 0.02
46 72 0.41
47 69 0.39
48 26 0.15
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTTCAGATGA
Found at i:83005506 original size:39 final size:39
Alignment explanation
Indices: 83005449--83005645 Score: 243
Period size: 39 Copynumber: 5.0 Consensus size: 39
83005439 GATGTGTATG
* *
83005449 AATTGTGCGA-ATCGTGATATCCGGGCTAAGCTCGAAGGC
1 AATTGTGCGAGAT-ATGATATCCGGGCTAAGCCCGAAGGC
83005488 AATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
83005527 AATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
* * * * *
83005566 GATTGTGCGAGTTGTGATATCTGGGTTAAGTCCCGAAGGC
1 AATTGTGCGAGATATGATATCCGGGCTAAG-CCCGAAGGC
* * * * * *
83005606 ATTTGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 AATTGTGCGAGATATGATATCCGGGCTAAG-CCCGAAGGC
83005646 GTTTGAGCGA
Statistics
Matches: 140, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 98 0.70
40 42 0.30
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
AATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
Found at i:83005672 original size:79 final size:77
Alignment explanation
Indices: 83005469--83005686 Score: 206
Period size: 79 Copynumber: 2.8 Consensus size: 77
83005459 ATCGTGATAT
* * * * * *
83005469 CCGGGCTAAGCTCGAAGGCAATTGTGCGA-GATATGATATCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAGCGAGGA-GTGATATCC-GGTTAAGCCCGAAGGCATTTGT
* *
83005533 GCGAGATATGATAT
64 GCGAGATATCATAA
* ** *
83005547 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCTGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAGCGAGGAGTGATATC-CGGTTAAG-CCCGAAGGCATTTGT
* *
83005612 GCGGGTTATCATAA
64 GCGAGATATCATAA
* * *
83005626 CCGGGCTATGTCCCGAAGGCGTTTGAGCGAGGAGCT-ATATCCGGTTAAACTCCGAAGGCAT
1 CCGGGCTAAG-CCCGAAGGCGATTGAGCGAGGAG-TGATATCCGGTTAAGC-CCGAAGGCAT
83005687 GTGATTTGAA
Statistics
Matches: 115, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
78 41 0.36
79 49 0.43
80 24 0.21
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCGATTGAGCGAGGAGTGATATCCGGTTAAGCCCGAAGGCATTTGTGC
GAGATATCATAA
Found at i:83011343 original size:123 final size:123
Alignment explanation
Indices: 83011124--83011462 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
83011114 GAATTATGTG
83011124 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
83011189 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
83011247 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
83011312 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
83011370 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
83011435 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
83011463 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:83011674 original size:40 final size:40
Alignment explanation
Indices: 83011431--83011653 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
83011421 TGAATGATAC
* * * **
83011431 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * * *
83011471 CCGGGTTAAGACTCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
83011511 CTGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
83011551 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
83011591 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
83011631 CCGGGCTAAGACCCGAGGGCATT
1 CCGGGCTAATACCCGAAGGCATT
83011654 CATGCGTGTG
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
40 158 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:83014413 original size:71 final size:71
Alignment explanation
Indices: 83014332--83014495 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
83014322 GAGATGTATC
83014332 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83014397 AGGACA
66 AGGACA
*
83014403 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
83014468 CGGACA
66 AGGACA
83014474 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
83014496 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:83017114 original size:28 final size:28
Alignment explanation
Indices: 83017082--83017178 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
83017072 CCGTAGATCA
83017082 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
83017110 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
83017138 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
83017166 CGATA-TACCCCTA
1 CGAAATTACCCCTA
83017179 GGGTTTTAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 8 0.12
28 58 0.88
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:83023479 original size:20 final size:20
Alignment explanation
Indices: 83023454--83023491 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83023444 GTTTATTCGC
*
83023454 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
83023474 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
83023492 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:83025150 original size:28 final size:28
Alignment explanation
Indices: 83025118--83025214 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
83025108 ACGTAGATCA
83025118 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
83025146 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
83025174 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
83025202 CGATA-TACCCCTA
1 CGAAATTACCCCTA
83025215 GGGTTTTAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 8 0.12
28 60 0.88
ACGTcount: A:0.44, C:0.27, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:83031284 original size:123 final size:123
Alignment explanation
Indices: 83031065--83031402 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
83031055 GAATTATGTG
*
83031065 AAATGAAATATGGATGTGTAATGATTATTAATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
83031130 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
83031188 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
83031253 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
83031311 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCC-G
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
83031375 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
83031403 AATTATATCC
Statistics
Matches: 206, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
122 27 0.13
123 179 0.87
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:83031440 original size:40 final size:40
Alignment explanation
Indices: 83031374--83031614 Score: 295
Period size: 40 Copynumber: 6.0 Consensus size: 40
83031364 AATGATACCC
* * * * **
83031374 GGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* * * *
83031414 GGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATATCCG
*
83031454 GGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
*
83031494 GGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* *
83031534 GGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* * ** *
83031574 GGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
83031614 G
1 G
83031615 TTGTATTCCG
Statistics
Matches: 179, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
Found at i:83037458 original size:14 final size:14
Alignment explanation
Indices: 83037439--83037469 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
83037429 ACATAAATAT
83037439 CTCAAAATATAGAA
1 CTCAAAATATAGAA
83037453 CTCAAAATATAGAA
1 CTCAAAATATAGAA
83037467 CTC
1 CTC
83037470 CTTTTCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (14 bp):
CTCAAAATATAGAA
Found at i:83041294 original size:42 final size:44
Alignment explanation
Indices: 83041191--83041327 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 44
83041181 TGTGATTTCA
* * * *
83041191 TGTAAGACCAC-GTTTGGGACATTGGCATCGATTTGTGATTTATG
1 TGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGAGTTATG
* * *
83041235 TGCAAGACCATGTCTGGGACATTGGCATTG-TATATGAGTT-TG
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGAGTTATG
* * * **
83041277 TGTAAGACCCTGTCTGGGATAATGGCATCGATATGTGA-TTACA
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGAGTTATG
83041320 TGTAAGAC
1 TGTAAGAC
83041328 AACATCTAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
42 29 0.39
43 21 0.28
44 25 0.33
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGAGTTATG
Found at i:83051851 original size:26 final size:27
Alignment explanation
Indices: 83051795--83051851 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
83051785 AGGCTACCAA
* *
83051795 ATATTGTGACGAAGTCACCAGATACAG
1 ATATTGTGACGAAGCCACAAGATACAG
* *
83051822 ATATTGTGGCGAGGCCACAAGA-ACAG
1 ATATTGTGACGAAGCCACAAGATACAG
83051848 ATAT
1 ATAT
83051852 ATGTATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
ATATTGTGACGAAGCCACAAGATACAG
Found at i:83052678 original size:54 final size:54
Alignment explanation
Indices: 83052604--83052721 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
83052594 GGGCAAAATG
* * * * *
83052604 GTAATTTTACCCCACAAGGGTATCTCGGTAATTTTACCATACAGGGGTATTTCA
1 GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
* * * *
83052658 GTATTTCTACCCTATAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
83052712 GTAATTCTAC
1 GTAATTCTAC
83052722 AACTTATCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
Found at i:83052718 original size:27 final size:27
Alignment explanation
Indices: 83052603--83052721 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
83052593 GGGGCAAAAT
* * *
83052603 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
83052630 GGTAATTTTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
83052657 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
83052684 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
83052711 GGTAATTCTAC
1 GGTAATTCTAC
83052722 AACTTATCCA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:83058593 original size:27 final size:26
Alignment explanation
Indices: 83058545--83058604 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
83058535 GCGAGGCTGC
*
83058545 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
83058572 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
83058598 CAGATAT
1 CAGATAT
83058605 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83058691 original size:27 final size:26
Alignment explanation
Indices: 83058643--83058694 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83058633 GCGAGGCTGC
*
83058643 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
83058669 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
83058695 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Done.