Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 27 of 425
Found at i:6973378 original size:22 final size:23
Alignment explanation
Indices: 6973343--6973404 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
6973333 CATTAAATCT
**
6973343 ATTAAAAAACAATT-TGAAAAAA
1 ATTAAAAATTAATTATGAAAAAA
*
6973365 ATTAAAAATTAATTATTAAAAAA
1 ATTAAAAATTAATTATGAAAAAA
*
6973388 ACTCAAAAATATAATTA
1 A-TTAAAAAT-TAATTA
6973405 AAATCAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 12 0.36
23 8 0.24
24 7 0.21
25 6 0.18
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.29
Consensus pattern (23 bp):
ATTAAAAATTAATTATGAAAAAA
Found at i:6982443 original size:21 final size:20
Alignment explanation
Indices: 6982408--6982446 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
6982398 TTAATTCTAT
6982408 AAAAGAAATTATTATTATAA
1 AAAAGAAATTATTATTATAA
*
6982428 AAAAGTAATATATTATTAT
1 AAAAGAAAT-TATTATTAT
6982447 GTTGTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
AAAAGAAATTATTATTATAA
Found at i:6986879 original size:16 final size:16
Alignment explanation
Indices: 6986849--6986896 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
6986839 GAAAATTAAT
6986849 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
6986864 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
6986881 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
6986896 A
1 A
6986897 CTTAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:6986895 original size:11 final size:11
Alignment explanation
Indices: 6986840--6986910 Score: 67
Period size: 11 Copynumber: 6.5 Consensus size: 11
6986830 ATAACTTAAG
*
6986840 AAAATTAATAT
1 AAAATTAAAAT
6986851 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
6986863 AATAA-T-AATT
1 AA-AATTAAAAT
*
6986873 AAAAAT-AAAT
1 AAAATTAAAAT
6986883 AAAATTAAAAT
1 AAAATTAAAAT
*
6986894 AAACTTAAAAT
1 AAAATTAAAAT
6986905 AAAATT
1 AAAATT
6986911 TCTTATTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.28
11 25 0.50
12 7 0.14
13 2 0.04
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:6989819 original size:93 final size:93
Alignment explanation
Indices: 6989707--6989878 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
6989697 CGCCCATAAG
* *
6989707 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6989772 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
6989800 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6989865 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
6989879 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:6989875 original size:46 final size:46
Alignment explanation
Indices: 6989700--6989875 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
6989690 TGTAACCCGC
* * *
6989700 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
6989746 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
6989796 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
6989839 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
6989876 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:6997382 original size:93 final size:93
Alignment explanation
Indices: 6997270--6997441 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
6997260 CGCCCATAAG
* *
6997270 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6997335 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
6997363 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6997428 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
6997442 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:6997438 original size:46 final size:46
Alignment explanation
Indices: 6997263--6997438 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
6997253 TGTAACCCGC
* * *
6997263 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
6997309 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
6997359 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
6997402 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
6997439 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7001356 original size:29 final size:29
Alignment explanation
Indices: 7001300--7001357 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
7001290 ACGTAGACAT
*
7001300 GCTTTAGTAAAAAGCACTGACAATGACGC
1 GCTTTAGTAAAAAGCACTGACAAGGACGC
*
7001329 GCTTTAGTAAAAAGCACTGACGAGGACGC
1 GCTTTAGTAAAAAGCACTGACAAGGACGC
7001358 ATTTTTGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (29 bp):
GCTTTAGTAAAAAGCACTGACAAGGACGC
Found at i:7003586 original size:15 final size:16
Alignment explanation
Indices: 7003566--7003595 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7003556 TGGAATTATT
7003566 ATTTTAAT-TAATATC
1 ATTTTAATATAATATC
7003581 ATTTTAATATAATAT
1 ATTTTAATATAATAT
7003596 GTTGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTAATATAATATC
Found at i:7004060 original size:21 final size:21
Alignment explanation
Indices: 7004031--7004085 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
7004021 CATCATTTTT
* * *
7004031 TTAAAAAAAATTAATAAATAT
1 TTAATAAAAATTAAAAAATAA
*
7004052 TTTAT-AAAATATAAAAAATAA
1 TTAATAAAAAT-TAAAAAATAA
7004073 TTAATAAAAATTA
1 TTAATAAAAATTA
7004086 CACGTGAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 5 0.19
21 17 0.63
22 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TTAATAAAAATTAAAAAATAA
Found at i:7004717 original size:54 final size:54
Alignment explanation
Indices: 7004659--7004958 Score: 271
Period size: 54 Copynumber: 5.2 Consensus size: 54
7004649 TAGGGTTTAA
*
7004659 TTAGGGTTTAGAAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
1 TTAGGGTTTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
* *
7004713 TTAGGATTTAGGAAAAATTAAATTAGAGTATTATGTTTTTAATTGTTTAGGGTT
1 TTAGGGTTTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
* * * *
7004767 TTAAGATTTAGGAAAATTTAAATTAAGGTATTATG-TTTTAATTGTTTAGGATTTTAGCGTTTT
1 TTAGGGTTTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTA-G------G-G--TT
* * * *
7004830 ATTAGGG-TTAGGAAAAATTATATTAGGGTATTAGGTTTTTAATTATTTAAGGTT
1 -TTAGGGTTTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
*
7004884 TTATGGTTTGATTAGAGGTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAGGGTT
1 TTA-GG---G--T-----TTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
*
7004949 TTATGGTTTA
1 TTAGGGTTTA
7004959 ATTTTTTTAA
Statistics
Matches: 203, Mismatches: 19, Indels: 48
0.75 0.07 0.18
Matches are distributed among these distances:
53 16 0.08
54 90 0.44
56 1 0.00
57 2 0.01
59 1 0.00
60 1 0.00
61 2 0.01
63 26 0.13
64 17 0.08
65 47 0.23
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (54 bp):
TTAGGGTTTAGGAAAAATTAAATTAGGGTATTATGTTTTTAATTGTTTAGGGTT
Found at i:7004874 original size:25 final size:25
Alignment explanation
Indices: 7004845--7004892 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7004835 GGTTAGGAAA
*
7004845 AATTATATTAGGGTATTA-GGTTTTT
1 AATTAT-TTAAGGTATTATGGTTTTT
*
7004870 AATTATTTAAGGTTTTATGGTTT
1 AATTATTTAAGGTATTATGGTTT
7004893 GATTAGAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (25 bp):
AATTATTTAAGGTATTATGGTTTTT
Found at i:7004920 original size:65 final size:64
Alignment explanation
Indices: 7004774--7004957 Score: 257
Period size: 65 Copynumber: 2.9 Consensus size: 64
7004764 GTTTTAAGAT
* * * *
7004774 TTAGGAAAATTTAAATTAAGGTATTATG-TTTTAATTGTTT-AGGATTTTA-GCGTTTTATTAGG
1 TTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGG-TTTTATG-GTTTGATTAGG
7004836 G
64 G
* *
7004837 TTAGGAAAAATTATATTAGGGTATTAGGTTTTTAATTATTTAAGGTTTTATGGTTTGATTAGAGG
1 TTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTATGGTTTGATTAG-GG
*
7004902 TTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAGGGTTTTATGGTTT
1 TTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTATGGTTT
7004958 AATTTTTTTA
Statistics
Matches: 108, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
63 24 0.22
64 25 0.23
65 59 0.55
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (64 bp):
TTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTATGGTTTGATTAGGG
Found at i:7005106 original size:59 final size:59
Alignment explanation
Indices: 7005025--7005227 Score: 318
Period size: 59 Copynumber: 3.4 Consensus size: 59
7005015 TACAGTCACT
* * *
7005025 AATATATTTATACAAAACTATTCAAAAGAAATTCTATTTTATTAAATGAAACAATATAAA
1 AATA-ATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
* * *
7005085 AATAATTTGTACAAAAATATTCAGAAGAACTTCTATTTTATTAAATGAAAAAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
*
7005144 AATAATTTGTACAAAAATATTCAAAAGGACTTCTATTTTATTAAATGAAACAATATAAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
*
7005203 AATAATTT-TACAAAAATATTAAAAA
1 AATAATTTGTACAAAAATATTCAAAA
7005228 ATAAATCAAT
Statistics
Matches: 132, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
58 16 0.12
59 112 0.85
60 4 0.03
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.34
Consensus pattern (59 bp):
AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
Found at i:7008245 original size:21 final size:21
Alignment explanation
Indices: 7008221--7008260 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7008211 TTAATTAATT
* *
7008221 TTTATATATTTTTTAAAAATA
1 TTTATATAATTTTAAAAAATA
*
7008242 TTTATTTAATTTTAAAAAA
1 TTTATATAATTTTAAAAAA
7008261 AAATCAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTATATAATTTTAAAAAATA
Found at i:7012502 original size:160 final size:160
Alignment explanation
Indices: 7012238--7012557 Score: 622
Period size: 160 Copynumber: 2.0 Consensus size: 160
7012228 TTCCAATACA
*
7012238 AACATTGTATTAAAGAATGAAAATAAGCATGAACATGATGGTACACGTACAACATAGGCCCTCAT
1 AACATTGTATTAAAGAATGAAAATAAGCATGAACATGATGGTACAAGTACAACATAGGCCCTCAT
*
7012303 TTAAAAAGTCTGACCCAAGCCAAACCCGTGTGTGAAAGGGACAGGCATAGAGAACTTACTTGCAT
66 TTAAAAAGTCTGACCCAAGCCAAACCCCTGTGTGAAAGGGACAGGCATAGAGAACTTACTTGCAT
7012368 GGTTGTTGTGATACTCATGCCGCCATCTTC
131 GGTTGTTGTGATACTCATGCCGCCATCTTC
7012398 AACATTGTATTAAAGAATGAAAATAAGCATGAACATGATGGTACAAGTACAACATAGGCCCTCAT
1 AACATTGTATTAAAGAATGAAAATAAGCATGAACATGATGGTACAAGTACAACATAGGCCCTCAT
7012463 TTAAAAAGTCTGACCCAAGCCAAACCCCTGTGTGAAAGGGACAGGCATAGAGAACTTACTTGCAT
66 TTAAAAAGTCTGACCCAAGCCAAACCCCTGTGTGAAAGGGACAGGCATAGAGAACTTACTTGCAT
7012528 GGTTGTTGTGATACTCATGCCGCCATCTTC
131 GGTTGTTGTGATACTCATGCCGCCATCTTC
7012558 TTCAGGGCGA
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 158 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (160 bp):
AACATTGTATTAAAGAATGAAAATAAGCATGAACATGATGGTACAAGTACAACATAGGCCCTCAT
TTAAAAAGTCTGACCCAAGCCAAACCCCTGTGTGAAAGGGACAGGCATAGAGAACTTACTTGCAT
GGTTGTTGTGATACTCATGCCGCCATCTTC
Found at i:7014905 original size:5 final size:5
Alignment explanation
Indices: 7014889--7014954 Score: 57
Period size: 5 Copynumber: 13.6 Consensus size: 5
7014879 ATTATTTACC
* * * *
7014889 TATAT CTATAT TATAT TTTAT TACAT AATAT T-TAT TATAT TATTT TATAT
1 TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
7014939 TTTA- T-TAT TATAT TAT
1 TATAT TATAT TATAT TAT
7014955 TTTACACTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
3 2 0.04
4 6 0.12
5 35 0.73
6 5 0.10
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:7014947 original size:8 final size:8
Alignment explanation
Indices: 7014920--7014958 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
7014910 TACATAATAT
*
7014920 TTATTATA
1 TTATTTTA
7014928 TTATTTTA
1 TTATTTTA
7014936 -TATTTTA
1 TTATTTTA
*
7014943 TTATTATA
1 TTATTTTA
7014951 TTATTTTA
1 TTATTTTA
7014959 CACTTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TTATTTTA
Found at i:7014950 original size:23 final size:23
Alignment explanation
Indices: 7014920--7014991 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
7014910 TACATAATAT
7014920 TTATTATATTATTTTATATTTTA
1 TTATTATATTATTTTATATTTTA
* *
7014943 TTATTATATTATTTTACACTTTA
1 TTATTATATTATTTTATATTTTA
* *
7014966 ATA-TATGTTATTTTATATTATTA
1 TTATTATATTATTTTATATT-TTA
7014989 TTA
1 TTA
7014992 CATCATATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 13 0.32
23 28 0.68
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (23 bp):
TTATTATATTATTTTATATTTTA
Found at i:7015293 original size:26 final size:27
Alignment explanation
Indices: 7015242--7015293 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
7015232 TCACTTCATT
* *
7015242 TTATATTATTAAATCTTTTATTTATTG
1 TTATATTATTAAATCATTTATATATTG
*
7015269 TTATATT-TTATATCATTTATATATT
1 TTATATTATTAAATCATTTATATATT
7015294 AAATGCTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (27 bp):
TTATATTATTAAATCATTTATATATTG
Found at i:7015341 original size:2 final size:2
Alignment explanation
Indices: 7015334--7015369 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7015324 TGTTTGTTTG
7015334 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7015370 GTTACTACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7015573 original size:18 final size:18
Alignment explanation
Indices: 7015550--7015586 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7015540 TGTTGTTATG
7015550 TAACTAAGATTTGCTATA
1 TAACTAAGATTTGCTATA
7015568 TAACTAAGATTTGCTATA
1 TAACTAAGATTTGCTATA
7015586 T
1 T
7015587 TTATGTATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (18 bp):
TAACTAAGATTTGCTATA
Found at i:7020805 original size:46 final size:48
Alignment explanation
Indices: 7020754--7020892 Score: 182
Period size: 46 Copynumber: 3.0 Consensus size: 48
7020744 ATGGTTGAGC
7020754 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATAG
* * *
7020801 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TA-G
7020846 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
7020893 CCGAGTTCGC
Statistics
Matches: 77, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
45 3 0.04
46 29 0.38
47 29 0.38
48 2 0.03
50 5 0.06
51 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATAG
Found at i:7028343 original size:46 final size:47
Alignment explanation
Indices: 7028290--7028424 Score: 145
Period size: 47 Copynumber: 2.9 Consensus size: 47
7028280 TTGAGCATCT
7028290 GAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAAT-G-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATG-GAATAGATCC
* * * *
7028336 GAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGGAA-TA-G-ATCC
*
7028383 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAT
1 GAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATG-GAAT
7028425 CCGAGTTCGC
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 25 0.35
47 28 0.39
48 2 0.03
50 5 0.07
51 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGGAATAGATCC
Found at i:7032286 original size:33 final size:33
Alignment explanation
Indices: 7032249--7032327 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
7032239 TGGCCTTGCC
* *
7032249 ATGGTCTTACACTCGTAG-TGCCATAACCCAGTT
1 ATGGTCTTACACTC-AAGATGCCATAACCCAGCT
**
7032282 ATGGTCTTATCA-TCAAGATGCCATGGCCCAGCT
1 ATGGTCTTA-CACTCAAGATGCCATAACCCAGCT
7032315 ATGGTCTTACACT
1 ATGGTCTTACACT
7032328 TATTCATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 4 0.10
33 33 0.85
34 2 0.05
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACACTCAAGATGCCATAACCCAGCT
Found at i:7035927 original size:30 final size:30
Alignment explanation
Indices: 7035891--7035950 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
7035881 ATTCTAGAGA
7035891 TAGAGAACTTAACCCATGAACCCGTCTCGT
1 TAGAGAACTTAACCCATGAACCCGTCTCGT
*
7035921 TAGAGAACTTAACCTATGAACCCGTCTCGT
1 TAGAGAACTTAACCCATGAACCCGTCTCGT
7035951 GGGTTCTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (30 bp):
TAGAGAACTTAACCCATGAACCCGTCTCGT
Found at i:7040427 original size:22 final size:22
Alignment explanation
Indices: 7040385--7040427 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7040375 AAATGGTAGC
*
7040385 AAAATAATGAAAAAACTACAAG
1 AAAATAATGAAAAAACAACAAG
7040407 AAAATAAT-AAAAAATCAACAA
1 AAAATAATGAAAAAA-CAACAA
7040428 TTTTTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.72, C:0.09, G:0.05, T:0.14
Consensus pattern (22 bp):
AAAATAATGAAAAAACAACAAG
Found at i:7041020 original size:72 final size:73
Alignment explanation
Indices: 7040933--7041096 Score: 240
Period size: 73 Copynumber: 2.3 Consensus size: 73
7040923 TCATCTATAC
* * *
7040933 CCTTCTCGCTCTTTTTCATTCTCATGTCTGAAGCATCTTC-TTATTTTCATTCTTCTTCCCATTT
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTATTTTCATTCTTCTACCCATTT
7040997 CCTTCCAA
66 CCTTCCAA
* * * *
7041005 CCTTCTCTCTCTTTTTCATTTTCACGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTACCTATTT
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTATTTTCATTCTTCTACCCATTT
*
7041070 CCTTCTAA
66 CCTTCCAA
*
7041078 CATTCTCCCTCTTTTTCAT
1 CCTTCTCCCTCTTTTTCAT
7041097 GCTTCTATCC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 37 0.45
73 45 0.55
ACGTcount: A:0.13, C:0.31, G:0.04, T:0.51
Consensus pattern (73 bp):
CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTATTTTCATTCTTCTACCCATTT
CCTTCCAA
Found at i:7044149 original size:33 final size:33
Alignment explanation
Indices: 7044110--7044176 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
7044100 AACTCTTGTT
7044110 TCCATCATGGATGTTTGAACTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
* *
7044143 TCCATCATGGATGTTTGGATTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
7044176 T
1 T
7044177 TGGTTTAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (33 bp):
TCCATCATGGATGTTTGAACTTGATCAAATTGG
Found at i:7044255 original size:43 final size:43
Alignment explanation
Indices: 7044194--7044279 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
7044184 ATCAGGAATT
7044194 GGTTGGGTATAAAGTTGGAAAAGACATCAAATTGGTTGCCTTA
1 GGTTGGGTATAAAGTTGGAAAAGACATCAAATTGGTTGCCTTA
* *
7044237 GGTTGGGTATCAAGTTGGAAAAGGCATCAAATTGGTTGCCTTA
1 GGTTGGGTATAAAGTTGGAAAAGACATCAAATTGGTTGCCTTA
7044280 TTGATTCGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.30
Consensus pattern (43 bp):
GGTTGGGTATAAAGTTGGAAAAGACATCAAATTGGTTGCCTTA
Found at i:7044381 original size:23 final size:23
Alignment explanation
Indices: 7044326--7044382 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
7044316 TAGTTAATCG
7044326 ATTT-TTAATTTTTATAAATATT
1 ATTTATTAATTTTTATAAATATT
*
7044348 ATTTTTATAATTTTTA-ATAAT-TT
1 ATTTAT-TAATTTTTATA-AATATT
7044371 ATTTAATTAATT
1 ATTT-ATTAATT
7044383 CATTGATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.13
23 13 0.43
24 13 0.43
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTATTAATTTTTATAAATATT
Found at i:7044701 original size:17 final size:17
Alignment explanation
Indices: 7044681--7044713 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7044671 ATTAAGAATG
7044681 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
7044698 TTATTAAATTATATTT
1 TTATTAAATTATATTT
7044714 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:7044980 original size:16 final size:16
Alignment explanation
Indices: 7044959--7045029 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
7044949 TAAATTACTG
*
7044959 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
7044975 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
7044991 ATTATAGTTCTATTCA
1 ATTACAGCTCTATTCA
* *
7045007 ATTACATCCCTATTCA
1 ATTACAGCTCTATTCA
7045023 ATTACAG
1 ATTACAG
7045030 TGAACAAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:7045927 original size:17 final size:19
Alignment explanation
Indices: 7045900--7045938 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7045890 TAAATAAAAA
*
7045900 TTTACTTTTAA-ATTATTT
1 TTTACTTTTAAGATAATTT
7045918 TTTA-TTTTAAGATAATTT
1 TTTACTTTTAAGATAATTT
7045936 TTT
1 TTT
7045939 TAATGAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTACTTTTAAGATAATTT
Found at i:7046530 original size:11 final size:11
Alignment explanation
Indices: 7046516--7046551 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
7046506 TTTCTACGTT
7046516 TTTTGTTTTTG
1 TTTTGTTTTTG
7046527 TTTTG-TTTTG
1 TTTTGTTTTTG
*
7046537 TTTTTTTTTTG
1 TTTTGTTTTTG
7046548 TTTT
1 TTTT
7046552 TGGTAAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (11 bp):
TTTTGTTTTTG
Found at i:7046535 original size:16 final size:16
Alignment explanation
Indices: 7046516--7046551 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7046506 TTTCTACGTT
7046516 TTTTGTTTTTGTTTTG
1 TTTTGTTTTTGTTTTG
*
7046532 TTTTGTTTTTTTTTTG
1 TTTTGTTTTTGTTTTG
7046548 TTTT
1 TTTT
7046552 TGGTAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (16 bp):
TTTTGTTTTTGTTTTG
Found at i:7046818 original size:15 final size:15
Alignment explanation
Indices: 7046798--7046833 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7046788 TTTAATTCTT
*
7046798 TATAAATTATAAAAA
1 TATAAACTATAAAAA
7046813 TATAAACTATAAAAA
1 TATAAACTATAAAAA
*
7046828 TTTAAA
1 TATAAA
7046834 ATTTCATCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:7047882 original size:30 final size:30
Alignment explanation
Indices: 7047846--7047906 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7047836 GGTCACTTTC
7047846 AAACTATGTTGCTACATAATAAAAAAGCTT
1 AAACTATGTTGCTACATAATAAAAAAGCTT
7047876 AAACTATGTTGCTACATAATAAAAAAGCTT
1 AAACTATGTTGCTACATAATAAAAAAGCTT
7047906 A
1 A
7047907 GGAAATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.30
Consensus pattern (30 bp):
AAACTATGTTGCTACATAATAAAAAAGCTT
Found at i:7050003 original size:2 final size:2
Alignment explanation
Indices: 7049996--7050026 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7049986 TAAAGCTCTT
7049996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7050027 GCGTTCTGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7051427 original size:19 final size:19
Alignment explanation
Indices: 7051403--7051444 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
7051393 CATTCTTCAA
7051403 AATTGTTGTTTAATTTTTT
1 AATTGTTGTTTAATTTTTT
7051422 AATTGTTGTTTAATTTTTT
1 AATTGTTGTTTAATTTTTT
7051441 AATT
1 AATT
7051445 TAATTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (19 bp):
AATTGTTGTTTAATTTTTT
Found at i:7056373 original size:94 final size:94
Alignment explanation
Indices: 7056233--7056410 Score: 218
Period size: 94 Copynumber: 1.9 Consensus size: 94
7056223 AGCTCTAAAA
* * * *
7056233 AAAAAAAGAAGTAATTAAGCCCTTATTGTTATTTTTTTTCACTCAATT-GGGTACTTGGACGGCC
1 AAAAAAAGAAGCAATTAAGCCCTGATTGTTATTTTTTTTCACTCAATTCAGGTACTTGAACGGCC
**
7056297 AAAATGTATAAAAAAAGGCTCTCAAACTTT
66 AAAATACAT-AAAAAAGGCTCTCAAACTTT
* * **
7056327 AAAAAAAGAAGCAATTAAGCCCCTGGTT-TT-TTTTTTTTGCATTCAATTCAGGTACTTGAATTG
1 AAAAAAAGAAGCAATTAAG-CCCTGATTGTTATTTTTTTT-CACTCAATTCAGGTACTTGAACGG
7056390 CCAAAATACATAAAAAAGGCT
64 CCAAAATACATAAAAAAGGCT
7056411 AGGGGCGGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 8 0.11
94 38 0.54
95 25 0.35
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (94 bp):
AAAAAAAGAAGCAATTAAGCCCTGATTGTTATTTTTTTTCACTCAATTCAGGTACTTGAACGGCC
AAAATACATAAAAAAGGCTCTCAAACTTT
Found at i:7056786 original size:10 final size:9
Alignment explanation
Indices: 7056739--7056953 Score: 80
Period size: 10 Copynumber: 22.7 Consensus size: 9
7056729 ATTTGACAAA
*
7056739 AAAAATGAT
1 AAAAATTAT
7056748 AAAAA-T-T
1 AAAAATTAT
*
7056755 AAAAATCAAT
1 AAAAAT-TAT
**
7056765 AAAGGTTAT
1 AAAAATTAT
7056774 AAAAATTATT
1 AAAAATTA-T
**
7056784 AAATTTTAAT
1 AAAAATT-AT
7056794 AATAAAATATAT
1 -A-AAAAT-TAT
7056806 AAAATATT-T
1 AAAA-ATTAT
*
7056815 AAAACTTACT
1 AAAAATTA-T
*
7056825 AAAAATTAG
1 AAAAATTAT
*
7056834 AAAAAATAT
1 AAAAATTAT
*
7056843 AAAAATCAT
1 AAAAATTAT
*
7056852 AAAAAATTGT
1 -AAAAATTAT
*
7056862 AAAATTTTAT
1 AAAA-ATTAT
*
7056872 AAAAATCAT
1 AAAAATTAT
7056881 AAAATATTAT
1 AAAA-ATTAT
7056891 -AAAATATAT
1 AAAAAT-TAT
* *
7056900 AGAAATATAG
1 AAAAAT-TAT
*
7056910 AAAAAATAT
1 AAAAATTAT
*
7056919 -AAAATTTT
1 AAAAATTAT
* *
7056927 ATAAAGTCAT
1 A-AAAATTAT
7056937 AAGAAAATTAT
1 -A-AAAATTAT
7056948 AAAAAT
1 AAAAAT
7056954 ATGTAAAGAA
Statistics
Matches: 149, Mismatches: 38, Indels: 38
0.66 0.17 0.17
Matches are distributed among these distances:
7 6 0.04
8 10 0.07
9 56 0.38
10 59 0.40
11 12 0.08
12 5 0.03
13 1 0.01
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7056847 original size:19 final size:19
Alignment explanation
Indices: 7056825--7056922 Score: 58
Period size: 19 Copynumber: 5.2 Consensus size: 19
7056815 AAAACTTACT
7056825 AAAAATTAGAAAAAATAT-
1 AAAAATTAGAAAAAATATA
* * *
7056843 AAAAATCATAAAAAATTGTA
1 AAAAATTAGAAAAAA-TATA
** *
7056863 AAATTTTA-TAAAAATCATA
1 AAAAATTAGAAAAAAT-ATA
* * *
7056882 AAATATTATAAAATATAT-
1 AAAAATTAGAAAAAATATA
*
7056900 AGAAATATAGAAAAAATATA
1 AAAAAT-TAGAAAAAATATA
7056920 AAA
1 AAA
7056923 TTTTATAAAG
Statistics
Matches: 58, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
18 18 0.31
19 28 0.48
20 12 0.21
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
AAAAATTAGAAAAAATATA
Found at i:7056857 original size:29 final size:28
Alignment explanation
Indices: 7056825--7056955 Score: 99
Period size: 29 Copynumber: 4.6 Consensus size: 28
7056815 AAAACTTACT
*
7056825 AAAAATTAGAAAAAATATAAAAATCATA
1 AAAAATTAGAAAATATATAAAAATCATA
*
7056853 AAAAATT-GTAAAATTTTATAAAAATCATA
1 AAAAATTAG-AAAA-TATATAAAAATCATA
* * *
7056882 AAATATTATAAAATATATAGAAAT-ATA
1 AAAAATTAGAAAATATATAAAAATCATA
* * * *
7056909 GAAAAAATATAAAAT-TTTATAAAGTCATA
1 -AAAAATTAGAAAATATATA-AAAATCATA
*
7056938 AGAAAATTATAAAA-ATAT
1 A-AAAATTAGAAAATATAT
7056956 GTAAAGAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 15
0.75 0.12 0.14
Matches are distributed among these distances:
27 7 0.09
28 36 0.44
29 39 0.48
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAAATTAGAAAATATATAAAAATCATA
Found at i:7056952 original size:38 final size:39
Alignment explanation
Indices: 7056795--7056952 Score: 113
Period size: 38 Copynumber: 4.2 Consensus size: 39
7056785 AATTTTAATA
*
7056795 ATAAAATAT-ATAAAATATT-TAAAACT-TACTA-AAAATT
1 ATAAAAAATCATAAAATATTATAAAA-TATA-TAGAAAATT
* * *
7056832 AGAAAAAAT-ATAAAA-ATCATAAAA-A-ATTGTAAAATT
1 ATAAAAAATCATAAAATATTATAAAATATATAG-AAAATT
*
7056868 TTATAAAAATCATAAAATATTATAAAATATATAG-AAATAT
1 ATA-AAAAATCATAAAATATTATAAAATATATAGAAAAT-T
* * *
7056908 AGAAAAAAT-ATAAAATTTTATAAAGTCATA-AGAAAATT
1 ATAAAAAATCATAAAATATTATAAAAT-ATATAGAAAATT
7056946 ATAAAAA
1 ATAAAAA
7056953 TATGTAAAGA
Statistics
Matches: 96, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
34 1 0.01
35 1 0.01
36 9 0.09
37 24 0.25
38 30 0.31
39 25 0.26
40 3 0.03
41 3 0.03
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (39 bp):
ATAAAAAATCATAAAATATTATAAAATATATAGAAAATT
Found at i:7056985 original size:20 final size:21
Alignment explanation
Indices: 7056937--7056994 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
7056927 ATAAAGTCAT
7056937 AAGAAAATTATAAAAATATGTA
1 AAGAAAA-TATAAAAATATGTA
7056959 AAG-AAATAT-AAAAT-TCGTA
1 AAGAAAATATAAAAATAT-GTA
*
7056978 AAGAAAATTACAAAAAT
1 AAGAAAA-TATAAAAAT
7056995 TATCGTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.03
19 11 0.35
20 6 0.19
21 5 0.16
22 8 0.26
ACGTcount: A:0.64, C:0.03, G:0.09, T:0.24
Consensus pattern (21 bp):
AAGAAAATATAAAAATATGTA
Found at i:7059761 original size:244 final size:247
Alignment explanation
Indices: 7059260--7059867 Score: 845
Period size: 244 Copynumber: 2.5 Consensus size: 247
7059250 ATTGTCAGAA
* * * * *
7059260 ATTGCTCAAGGTAAT-GATGATCCAAGATGAATGCCCT-TTCGTTTACCACTGCCTGCCATATAG
1 ATTGCTCAAGG--ATGGA-GATCCAAGATGAATGCACTATTGGCTT-CAATTGCCTGCCATATAG
* *
7059323 TGTTGTGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAATTTGTTTTTCT
62 TGTTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTTCT
* * * * *
7059388 TTTTTACCAAATACACATCTAGCAATTGCGGCTGTTTATGCTTCTTTCCCTGTAGAACCTGCAAC
127 TTTTTACCAAATACAAATCTAGCAATTGCGACTGTTAATGCTTATTTCCCAGTAGAACCTGCAAC
**
7059453 GTTTAAAATACTGGATTGTAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
192 GTTTAAAATACTGGATCCTAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
* *
7059509 ATTGCTCAAGG-T-GTGATCCAAGATGAATGCAGTATTGGCTTCAATTGCCTGCCATATAGTGTT
1 ATTGCTCAAGGATGGAGATCCAAGATGAATGCACTATTGGCTTCAATTGCCTGCCATATAGTGTT
7059572 ATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTG-TTTTCTTTTT
66 ATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTTCTTTTT
*** * * *
7059636 TACCTTTTTCAAATTTTGCAATTGCGACTGGTTAAT-CTTATTGT-CCAGCT-GAACCTGCAACG
131 TACCAAATACAAATCTAGCAATTGCGACT-GTTAATGCTTATT-TCCCAG-TAGAACCTGCAACG
*
7059698 TTTAAAATATTGGATCCTAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
193 TTTAAAATACTGGATCCTAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
* *
7059753 ATTGCTCAAGGTAATGGAGATCCAAGATGAATGCCCTATTGGCTTCCATTGCCTGCCATATAGTG
1 ATTGCTCAAGG--ATGGAGATCCAAGATGAATGCACTATTGGCTTCAATTGCCTGCCATATAGTG
*
7059818 TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAGATACATA
64 TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATA
7059868 TCTCTGCAAA
Statistics
Matches: 323, Mismatches: 28, Indels: 17
0.88 0.08 0.05
Matches are distributed among these distances:
244 114 0.35
245 96 0.30
246 7 0.02
247 1 0.00
248 94 0.29
249 11 0.03
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (247 bp):
ATTGCTCAAGGATGGAGATCCAAGATGAATGCACTATTGGCTTCAATTGCCTGCCATATAGTGTT
ATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTTCTTTTT
TACCAAATACAAATCTAGCAATTGCGACTGTTAATGCTTATTTCCCAGTAGAACCTGCAACGTTT
AAAATACTGGATCCTAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
Found at i:7064660 original size:239 final size:239
Alignment explanation
Indices: 7064241--7064853 Score: 1127
Period size: 239 Copynumber: 2.6 Consensus size: 239
7064231 TTATGTAATT
*
7064241 CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAGTTACACAAAATTCCATTA
1 CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAATTACACAAAATTCCATTA
*
7064306 TTTACTTATATTCACATCAAAGCTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGAG
66 ATTACTTATATTCACATCAAAGCTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGAG
7064371 CTACTGATGCACAAGGATGTACATATCATAGCAACAAAAGGCATCACAGGTCAGAGGATAGTAAC
131 CTACTGATGCACAAGGATGTACATATCATAGCAACAAAAGGCATCACAGGTCAGAGGATAGTAAC
7064436 AACCAGTTTTGCATACGTATTATGTAACACCTCTAACCCACATC
196 AACCAGTTTTGCATACGTATTATGTAACACCTCTAACCCACATC
7064480 CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAATTACACAAAATTCCATTA
1 CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAATTACACAAAATTCCATTA
*
7064545 ATTACTTATATTCACATCAAAGTTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGAG
66 ATTACTTATATTCACATCAAAGCTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGAG
7064610 CTACTGATGCACAAGGATGTACATATCATAGCAACAAAAGGCATCACAGGTCAGAGGATAGTAAC
131 CTACTGATGCACAAGGATGTACATATCATAGCAACAAAAGGCATCACAGGTCAGAGGATAGTAAC
* *
7064675 AATCGGTTTTGCATACGTATTATGTAACACCTCTAACCCACATC
196 AACCAGTTTTGCATACGTATTATGTAACACCTCTAACCCACATC
* *
7064719 CGTCACCGGAACAGGGTTACAAGATGTTACCGAAGTTTAGGGAATAATTACACAAAAATTCCATT
1 CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAATTACAC-AAAATTCCATT
* * *
7064784 AATTACTTATATTCACATCAAAACTGTCCACTCAAGTCATACTCACTAAATTATTAATATCTTGA
65 AATTACTTATATTCACATCAAAGCTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGA
7064849 GCTAC
130 GCTAC
7064854 GGAACTCAAA
Statistics
Matches: 362, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
239 285 0.79
240 77 0.21
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (239 bp):
CGTCACCGGAACAGGGTTACAAGATGTTACCGATGTTTACGGAATAATTACACAAAATTCCATTA
ATTACTTATATTCACATCAAAGCTGTCCACTCGAGTCATAGTCACTAAATTATTAATATCTTGAG
CTACTGATGCACAAGGATGTACATATCATAGCAACAAAAGGCATCACAGGTCAGAGGATAGTAAC
AACCAGTTTTGCATACGTATTATGTAACACCTCTAACCCACATC
Found at i:7065875 original size:35 final size:35
Alignment explanation
Indices: 7065808--7065966 Score: 159
Period size: 35 Copynumber: 4.7 Consensus size: 35
7065798 TCCTCATTGA
* * * * * *
7065808 AATATCATAACTACATTTTACAACTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* **
7065843 AATGCCATACCTACGTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
7065878 AATA-C---CGTA--TTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
7065907 AATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
7065942 GATACCATACCTATGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
7065967 TTGCCATGGA
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
29 21 0.21
30 1 0.01
31 3 0.03
33 3 0.03
34 1 0.01
35 71 0.71
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:7065932 original size:64 final size:64
Alignment explanation
Indices: 7065822--7065947 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 64
7065812 TCATAACTAC
* * * **
7065822 ATTTTACAACTCGGTATGGAAAATGCCATACCTACGTTTCTTAACTCAGTATGGATAATACCGT
1 ATTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCACAACTCAGTATGGATAATACCGT
** *
7065886 ATTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTATGGATGATACC
1 ATTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCACAACTCAGTATGGATAATACC
7065948 ATACCTATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (64 bp):
ATTTCACAACTCAGTATGGAAAATACCATACCTACGTTTCACAACTCAGTATGGATAATACCGT
Found at i:7065984 original size:35 final size:35
Alignment explanation
Indices: 7065887--7065984 Score: 108
Period size: 35 Copynumber: 2.8 Consensus size: 35
7065877 TAATACCGTA
* * *
7065887 TTTCACAACTCAGTATGGTTAATACCATACCTACG
1 TTTCACAACTCAGCATGGATCATACCATACCTACG
* * *
7065922 TTTCACAACTCAGTATGGATGATACCATACCTATG
1 TTTCACAACTCAGCATGGATCATACCATACCTACG
**
7065957 TTTCACAACTTTGCCATGGATCA-ACCAT
1 TTTCACAACTCAG-CATGGATCATACCAT
7065985 GGTTTTATTC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 48 0.87
36 7 0.13
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.32
Consensus pattern (35 bp):
TTTCACAACTCAGCATGGATCATACCATACCTACG
Found at i:7072818 original size:10 final size:10
Alignment explanation
Indices: 7072803--7072848 Score: 76
Period size: 10 Copynumber: 4.6 Consensus size: 10
7072793 ATAGTAAAAT
7072803 ATAAATAAAG
1 ATAAATAAAG
7072813 ATAAATAAAG
1 ATAAATAAAG
7072823 ATAAATAAAG
1 ATAAATAAAG
7072833 ATAAATGAAA-
1 ATAAAT-AAAG
7072843 ATAAAT
1 ATAAAT
7072849 CTTAAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
10 32 0.91
11 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:7074376 original size:21 final size:21
Alignment explanation
Indices: 7074352--7074416 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
7074342 AAGTCTAACT
7074352 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
** *
7074373 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
7074391 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
7074412 GAAGC
1 GAAGC
7074417 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:7074392 original size:39 final size:39
Alignment explanation
Indices: 7074338--7074434 Score: 185
Period size: 39 Copynumber: 2.5 Consensus size: 39
7074328 TGATCTGAAA
*
7074338 CCCGAAGTCTAACTGAAGCACATAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG
7074377 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG
7074416 CCCGAAGGCTAACTGAAGC
1 CCCGAAGGCTAACTGAAGC
7074435 TCACTAGAGC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.37, C:0.25, G:0.25, T:0.13
Consensus pattern (39 bp):
CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG
Found at i:7074876 original size:21 final size:22
Alignment explanation
Indices: 7074836--7074876 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7074826 TTCCAAATAA
* *
7074836 AACATTATATCGTTTCTAATTC
1 AACATTATATCGATTATAATTC
7074858 AACATT-TATCGATTATAAT
1 AACATTATATCGATTATAAT
7074877 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.44
Consensus pattern (22 bp):
AACATTATATCGATTATAATTC
Found at i:7077665 original size:5 final size:5
Alignment explanation
Indices: 7077655--7077763 Score: 82
Period size: 5 Copynumber: 21.6 Consensus size: 5
7077645 TTAATATCCA
* * *
7077655 AAAAT AAAAT AATAA- ATAAT AAAAT AAAGT AAAAT AAAAT AAAAAT ACTAAT
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT A-AAAT
* * * *
7077707 AAAAT AAAAT GAAAT AAAAT AATAA- ACAAT AAAATT AAGA- AAAGT AAAA-
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAA-T AAAAT AAAAT AAAAT
7077756 AAAAT AAA
1 AAAAT AAA
7077764 GGTTGGGTTG
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
4 10 0.12
5 54 0.67
6 17 0.21
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:7077707 original size:27 final size:28
Alignment explanation
Indices: 7077655--7077732 Score: 97
Period size: 27 Copynumber: 2.8 Consensus size: 28
7077645 TTAATATCCA
*
7077655 AAAATAAAATAATAAATAATAAAATAAAGT
1 AAAATAAAATAA-AAATAAT-AAATAAAAT
*
7077685 AAAATAAAATAAAAATACT-AATAAAAT
1 AAAATAAAATAAAAATAATAAATAAAAT
*
7077712 AAAATGAAAT-AAAATAATAAA
1 AAAATAAAATAAAAATAATAAA
7077733 CAATAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
26 7 0.16
27 18 0.42
29 6 0.14
30 12 0.28
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (28 bp):
AAAATAAAATAAAAATAATAAATAAAAT
Found at i:7079293 original size:22 final size:22
Alignment explanation
Indices: 7079265--7079308 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7079255 GGTTGGCCCT
7079265 AAACTCAAGTTAGGATGGTCCC
1 AAACTCAAGTTAGGATGGTCCC
7079287 AAACTCAAGTTAGGATGGTCCC
1 AAACTCAAGTTAGGATGGTCCC
7079309 TCCATCCTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (22 bp):
AAACTCAAGTTAGGATGGTCCC
Found at i:7080902 original size:23 final size:23
Alignment explanation
Indices: 7080872--7080958 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
7080862 GCTTTACTGA
* *
7080872 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
7080895 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
7080916 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
7080938 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
7080959 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:7084641 original size:26 final size:24
Alignment explanation
Indices: 7084601--7084660 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
7084591 TTATTTCATT
* * *
7084601 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
7084625 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
7084651 AAATAAATAT
1 AAATAAATAT
7084661 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:7084672 original size:22 final size:22
Alignment explanation
Indices: 7084631--7084689 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
7084621 ATAATAAATC
* *
7084631 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
7084651 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
7084673 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
7084690 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:7084766 original size:15 final size:16
Alignment explanation
Indices: 7084736--7084768 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7084726 AAATAGTTAT
7084736 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
7084753 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
7084768 A
1 A
7084769 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:7085251 original size:17 final size:18
Alignment explanation
Indices: 7085229--7085262 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7085219 AGTCAAATTG
7085229 AAATTGC-AAAATTAAAT
1 AAATTGCGAAAATTAAAT
7085246 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
7085263 ATGGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:7085997 original size:10 final size:9
Alignment explanation
Indices: 7085982--7086037 Score: 67
Period size: 10 Copynumber: 5.7 Consensus size: 9
7085972 ATACTAAAAG
7085982 ATAAATACAA
1 ATAAATA-AA
7085992 ATAAATAAA
1 ATAAATAAA
7086001 GATAAATAAA
1 -ATAAATAAA
7086011 GATAAATGAAA
1 -ATAAAT-AAA
7086022 ATAAATGAAA
1 ATAAAT-AAA
7086032 ATAAAT
1 ATAAAT
7086038 CCTAAAATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.89
11 3 0.07
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (9 bp):
ATAAATAAA
Found at i:7086001 original size:20 final size:20
Alignment explanation
Indices: 7085978--7086037 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
7085968 TTAAATACTA
7085978 AAAGATAAATACAAATAAAT-
1 AAAGATAAATA-AAATAAATG
7085998 AAAGATAAATAAAGATAAATG
1 AAAGATAAATAAA-ATAAATG
7086019 AAA-ATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
7086038 CCTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.05
20 29 0.78
21 6 0.16
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAAATAAATG
Found at i:7086012 original size:30 final size:30
Alignment explanation
Indices: 7085978--7086037 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
7085968 TTAAATACTA
7085978 AAAGATAAAT-ACAAATAAAT-AAAGATAAAT
1 AAAGATAAATGA-AAATAAATGAAA-ATAAAT
7086008 AAAGATAAATGAAAATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAATGAAAATAAAT
7086038 CCTAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (30 bp):
AAAGATAAATGAAAATAAATGAAAATAAAT
Found at i:7087654 original size:12 final size:12
Alignment explanation
Indices: 7087637--7087668 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7087627 CAGCCTGCTC
7087637 ATATTAATTTTT
1 ATATTAATTTTT
7087649 ATATT-ATTTTT
1 ATATTAATTTTT
7087660 ATA-TAATTT
1 ATATTAATTT
7087669 AAAATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:7087928 original size:21 final size:20
Alignment explanation
Indices: 7087902--7087955 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
7087892 CAAAATAGAG
*
7087902 AAAAAACAGCAAGAAAATAA
1 AAAAAACAGCAAAAAAATAA
*
7087922 TAAAAAATAGCAAAAAAATAA
1 -AAAAAACAGCAAAAAAATAA
*
7087943 AAAAAGCAGCAAA
1 AAAAAACAGCAAA
7087956 TTTTTTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.07
Consensus pattern (20 bp):
AAAAAACAGCAAAAAAATAA
Found at i:7087941 original size:18 final size:17
Alignment explanation
Indices: 7087915--7087950 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
7087905 AAACAGCAAG
*
7087915 AAAATAATAAAAAATAGC
1 AAAAAAATAAAAAA-AGC
7087933 AAAAAAATAAAAAAAGC
1 AAAAAAATAAAAAAAGC
7087950 A
1 A
7087951 GCAAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAAAATAAAAAAAGC
Found at i:7089089 original size:16 final size:18
Alignment explanation
Indices: 7089063--7089099 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
7089053 TAAATAAAAA
*
7089063 TTTACTTTTAA-ATTATT
1 TTTACTTTTAAGATAATT
7089080 TTTA-TTTTAAGATAATT
1 TTTACTTTTAAGATAATT
7089097 TTT
1 TTT
7089100 TTAATGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTACTTTTAAGATAATT
Found at i:7089349 original size:18 final size:17
Alignment explanation
Indices: 7089287--7089352 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
7089277 CAAATAAAAT
7089287 AAATAGATATTTAAA--A
1 AAATAGA-ATTTAAATTA
7089303 AAATTA-AATTTAAATTA
1 AAA-TAGAATTTAAATTA
*
7089320 AAATAGATTTTATAATT-
1 AAATAGAATTTA-AATTA
7089337 AAATAGTAATTTAAAT
1 AAATAG-AATTTAAAT
7089353 CAAATTTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
15 7 0.17
16 6 0.14
17 20 0.48
18 9 0.21
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (17 bp):
AAATAGAATTTAAATTA
Found at i:7089357 original size:17 final size:16
Alignment explanation
Indices: 7089283--7089357 Score: 57
Period size: 17 Copynumber: 4.6 Consensus size: 16
7089273 TAAACAAATA
7089283 AAAT-AAATAGATATTT
1 AAATAAAATAGA-ATTT
7089299 AAA-AAAATTA-AATTT
1 AAATAAAA-TAGAATTT
*
7089314 AAATTAAAATAGATTTT
1 AAA-TAAAATAGAATTT
*
7089331 ATAATTAAATAGTAATTT
1 A-AATAAAATAG-AATTT
*
7089349 AAATCAAAT
1 AAATAAAAT
7089358 TTAGAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
15 7 0.15
16 9 0.19
17 25 0.52
18 7 0.15
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (16 bp):
AAATAAAATAGAATTT
Found at i:7092184 original size:18 final size:18
Alignment explanation
Indices: 7092157--7092191 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7092147 ACATGATTAG
*
7092157 TAATTGGATTTAATCAAA
1 TAATTAGATTTAATCAAA
7092175 TAATTAGATTTAATCAA
1 TAATTAGATTTAATCAA
7092192 TAGTATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (18 bp):
TAATTAGATTTAATCAAA
Found at i:7100108 original size:17 final size:17
Alignment explanation
Indices: 7100088--7100128 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7100078 AATTAATAAA
*
7100088 AAATATATAAAATTAT-T
1 AAATAT-TAAAATAATGT
7100105 AAATATTAAAATAATGT
1 AAATATTAAAATAATGT
7100122 AAATATT
1 AAATATT
7100129 TTTAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
AAATATTAAAATAATGT
Found at i:7102525 original size:41 final size:40
Alignment explanation
Indices: 7102468--7102544 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 40
7102458 AAAAAATAAA
*
7102468 AATAAAAAATCAATAAAAGT-TGTAAAATTTATTAAATTTT
1 AATAAAAAATCAAT-AAAGTATGTAAAACTTATTAAATTTT
*
7102508 AATAACAAAAT-ATATAAAGTATTTAAAACTTATTAAA
1 AATAA-AAAATCA-ATAAAGTATGTAAAACTTATTAAA
7102545 AATTAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
40 11 0.34
41 21 0.66
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (40 bp):
AATAAAAAATCAATAAAGTATGTAAAACTTATTAAATTTT
Found at i:7102642 original size:20 final size:20
Alignment explanation
Indices: 7102600--7102652 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
7102590 AAAATTTTAC
* *
7102600 AAATATCATA-AAATATTATA
1 AAATAT-ATAGAAATATAAAA
7102620 AAATATATAGAAATATAAAA
1 AAATATATAGAAATATAAAA
* *
7102640 AAAAATTTAGAAA
1 AAATATATAGAAA
7102653 ATTATATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (20 bp):
AAATATATAGAAATATAAAA
Found at i:7103297 original size:86 final size:85
Alignment explanation
Indices: 7103122--7103348 Score: 210
Period size: 86 Copynumber: 2.6 Consensus size: 85
7103112 TAATTGAGTG
* * * *
7103122 AAAAAAAG-GGGCTTAA-TGACTTTTTTTTAAAAAGTTTGAGGGCA-TTTTTTATTAATTTTGAC
1 AAAAAAAGAGGGCTTAATTG-CTTTTTTTGAAAAAATTTGA--G-ATTTTTTTATGAATTTTGAA
* *
7103184 AGTTTAAGTACCCAATTCAGTGTA
62 AGTTCAAATACCCAATTCAGTGTA
*
7103208 AAAAAAAGTAGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGATTTTTTTATGCATTTTGAAAGT
1 AAAAAAAG-AGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGATTTTTTTATGAATTTTGAAAGT
* *
7103273 TCAAATA-TCAATTGAGTGTAAA
65 TCAAATACCCAATTCAGTGT--A
* * **
7103295 AAAAAAAAAGGAGACTTAATTACTTTTTTTTGAAAAAATCCGAAGATTTTTTTA
1 AAAAAAAGAGG-G-CTTAATTGC-TTTTTTTGAAAAAATTTG-AGATTTTTTTA
7103349 CAACTTTAAG
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
85 11 0.09
86 35 0.30
87 9 0.08
88 34 0.29
89 18 0.15
90 11 0.09
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.39
Consensus pattern (85 bp):
AAAAAAAGAGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGATTTTTTTATGAATTTTGAAAGTT
CAAATACCCAATTCAGTGTA
Found at i:7105822 original size:18 final size:18
Alignment explanation
Indices: 7105796--7105885 Score: 117
Period size: 18 Copynumber: 5.0 Consensus size: 18
7105786 TACCGTTTAT
*
7105796 GGTACTATTCACGTATAC
1 GGTACTATTCATGTATAC
* * *
7105814 GGCACTATTTATGTATAT
1 GGTACTATTCATGTATAC
7105832 GGTACTATTCATGTATAC
1 GGTACTATTCATGTATAC
*
7105850 AGTACTATTCATGTATAC
1 GGTACTATTCATGTATAC
* *
7105868 GGTACTGTTCACGTATAC
1 GGTACTATTCATGTATAC
7105886 AGTAGTTGGG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (18 bp):
GGTACTATTCATGTATAC
Found at i:7105840 original size:36 final size:36
Alignment explanation
Indices: 7105793--7105887 Score: 136
Period size: 36 Copynumber: 2.6 Consensus size: 36
7105783 TACTACCGTT
* *
7105793 TATGGTACTATTCACGTATACGGCACTATTTATGTA
1 TATGGTACTATTCACGTATACAGCACTATTCATGTA
* *
7105829 TATGGTACTATTCATGTATACAGTACTATTCATGTA
1 TATGGTACTATTCACGTATACAGCACTATTCATGTA
* *
7105865 TACGGTACTGTTCACGTATACAG
1 TATGGTACTATTCACGTATACAG
7105888 TAGTTGGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (36 bp):
TATGGTACTATTCACGTATACAGCACTATTCATGTA
Found at i:7106761 original size:11 final size:11
Alignment explanation
Indices: 7106747--7106771 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7106737 TGGCATGTGC
7106747 ATGTCAAACGG
1 ATGTCAAACGG
7106758 ATGTCAAACGG
1 ATGTCAAACGG
7106769 ATG
1 ATG
7106772 AGTGGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (11 bp):
ATGTCAAACGG
Found at i:7111009 original size:248 final size:248
Alignment explanation
Indices: 7110566--7111176 Score: 949
Period size: 248 Copynumber: 2.5 Consensus size: 248
7110556 ATTGTCAGAA
* * *
7110566 ATTGCTCAAGGTAATGATGATCCAAGCTGAATGCCCTATTGGCTTCAATTGCCTGCCATATAGTG
1 ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCTAGTGGCTTCAATTGCCTGCCATATAGTG
7110631 TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTCTTTT
66 TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTCTTTT
* * * * *
7110696 TTACCTTAAACACATCTAGCAATTGCGGCTGTTTAAGCTTCTTTCCCTGTAGAACCTGCAACGTT
131 TTACCTTAAACAAATCTAGCAATTGCGACTGGTTAAGCTTATTTCCCAGTAGAACCTGCAACGTT
*
7110761 TAAAATACTGGTTTATAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
196 TAAAATACTGGATTATAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
*
7110814 ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCTAGTGGCTTCAATTGCTTGCCATATAGTG
1 ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCTAGTGGCTTCAATTGCCTGCCATATAGTG
* *
7110879 TCATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATCCATAAACTTGTTTTCTTTT
66 TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTCTTTT
**** * * *
7110944 TTACCTTTTTGAAATCTTGCAATTGCGACTGGTTAATCTTATTGT-CCAGCT-GAACCTGTAACG
131 TTACCTTAAACAAATCTAGCAATTGCGACTGGTTAAGCTTATT-TCCCAG-TAGAACCTGCAACG
* * *
7111007 TTTAAAATACTGGATTGTAAGCTCAAACATTATATGTTATAAACTTAGGAGAGAG
194 TTTAAAATACTGGATTATAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
* *
7111062 ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCT-GTTGGCTTCCATTGCCTGCCATTTAGT
1 ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCTAG-TGGCTTCAATTGCCTGCCATATAGT
*
7111126 GTTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAGATACATA
65 GTTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATA
7111177 TCTCTGCAAA
Statistics
Matches: 332, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
247 1 0.00
248 329 0.99
249 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (248 bp):
ATTGCTCAAGGTAATGGTGATCCAAGATGAATGCCCTAGTGGCTTCAATTGCCTGCCATATAGTG
TTATGTATGTATTCATAAAGTAGTTAATTTGAAAGGAAAAGAAATACATAAACTTGTTTTCTTTT
TTACCTTAAACAAATCTAGCAATTGCGACTGGTTAAGCTTATTTCCCAGTAGAACCTGCAACGTT
TAAAATACTGGATTATAAGCTCAAACATTATATGTTATAAACCTAGGAAAGAG
Found at i:7120692 original size:93 final size:93
Alignment explanation
Indices: 7120585--7120811 Score: 337
Period size: 93 Copynumber: 2.4 Consensus size: 93
7120575 CTATCGAATG
* * *** *
7120585 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAGCTGCTATGTACACTTTTTATGTACACT
1 TGAAAAGGAAAGGTATACTCTGTGTGTACCACATGAAAAGGCTATGTACACTTTGTATGTACACT
7120650 TGAAATGATATACTTTGTGTATATCATT
66 TGAAATGATATACTTTGTGTATATCATT
** *
7120678 TGAAAAGGAAAGGTATACTCTGTGTGTACCATTTGAAAAGGCTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTCTGTGTGTACCACATGAAAAGGCTATGTACACTTTGTATGTACACT
*
7120743 TGAAATGGTATACTTTGTGTATATCATT
66 TGAAATGATATACTTTGTGTATATCATT
* **
7120771 TGAAAAGAAAAGGTATACTCTGTGTGTACCATTTGAAAAGG
1 TGAAAAGGAAAGGTATACTCTGTGTGTACCACATGAAAAGG
7120812 AAAGGTATAC
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 123 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (93 bp):
TGAAAAGGAAAGGTATACTCTGTGTGTACCACATGAAAAGGCTATGTACACTTTGTATGTACACT
TGAAATGATATACTTTGTGTATATCATT
Found at i:7120702 original size:33 final size:33
Alignment explanation
Indices: 7120658--7120865 Score: 212
Period size: 33 Copynumber: 6.5 Consensus size: 33
7120648 CTTGAAATGA
* *
7120658 TATACTTTGTGTATATCATTTGAAAAGGAAAGG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
* ** *
7120691 TATACTCTGTGTGTACCATTTGAAAAGGCTATG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
* * *
7120724 TACACTTTGTGTGTA-CACTTG---A--AATGG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
* * *
7120751 TATACTTTGTGTATATCATTTGAAAAGAAAAGG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
*
7120784 TATACTCTGTGTGTACCATTTGAAAAGGAAAGG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
* *
7120817 TATACTTTGTGTGTACCATTTGAAAAAGAAATG
1 TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
* * *
7120850 TACACCTTGAGTGTAC
1 TATACTTTGTGTGTAC
7120866 TACTGGAAAA
Statistics
Matches: 142, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
27 14 0.10
28 5 0.04
29 1 0.01
31 1 0.01
32 5 0.04
33 116 0.82
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (33 bp):
TATACTTTGTGTGTACCATTTGAAAAGGAAAGG
Found at i:7120795 original size:60 final size:60
Alignment explanation
Indices: 7120685--7120808 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
7120675 ATTTGAAAAG
* *** * *
7120685 GAAAGGTATACTCTGTGTGTACCATTTGAAAAGGCTATGTACACTTTGTGTGTA-CACTT
1 GAAAGGTATACTCTGTGTATACCATTTGAAAAGAAAAGGTACACTCTGTGTGTACCACTT
* * * *
7120744 GAAATGGTATACTTTGTGTATATCATTTGAAAAGAAAAGGTATACTCTGTGTGTACCATTT
1 GAAA-GGTATACTCTGTGTATACCATTTGAAAAGAAAAGGTACACTCTGTGTGTACCACTT
7120805 GAAA
1 GAAA
7120809 AGGAAAGGTA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 4 0.08
60 41 0.77
61 8 0.15
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (60 bp):
GAAAGGTATACTCTGTGTATACCATTTGAAAAGAAAAGGTACACTCTGTGTGTACCACTT
Found at i:7120824 original size:93 final size:93
Alignment explanation
Indices: 7120630--7120841 Score: 334
Period size: 93 Copynumber: 2.3 Consensus size: 93
7120620 AAGCTGCTAT
* * *
7120630 GTACACTTTTTATGTACACTTGAAATGATATACTTTGTGTATATCATTTGAAAAGGAAAGGTATA
1 GTACACTTTGTGTGTACACTTGAAATGATATACTTTGTGTATATCATTTGAAAAGAAAAGGTATA
** *
7120695 CTCTGTGTGTACCATTTGAAAAGGCTAT
66 CTCTGTGTGTACCATTTGAAAAGGAAAG
*
7120723 GTACACTTTGTGTGTACACTTGAAATGGTATACTTTGTGTATATCATTTGAAAAGAAAAGGTATA
1 GTACACTTTGTGTGTACACTTGAAATGATATACTTTGTGTATATCATTTGAAAAGAAAAGGTATA
7120788 CTCTGTGTGTACCATTTGAAAAGGAAAG
66 CTCTGTGTGTACCATTTGAAAAGGAAAG
* *
7120816 GTATACTTTGTGTGTACCATTTGAAA
1 GTACACTTTGTGTGTA-CACTTGAAA
7120842 AAGAAATGTA
Statistics
Matches: 109, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
93 101 0.93
94 8 0.07
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (93 bp):
GTACACTTTGTGTGTACACTTGAAATGATATACTTTGTGTATATCATTTGAAAAGAAAAGGTATA
CTCTGTGTGTACCATTTGAAAAGGAAAG
Found at i:7120875 original size:66 final size:67
Alignment explanation
Indices: 7120744--7120881 Score: 156
Period size: 66 Copynumber: 2.1 Consensus size: 67
7120734 GTGTACACTT
* * * * *
7120744 GAAATGGTATACTTTGTGTATATCATTTGAAAAGAAAAGGTATACTCTGTGTGTACCATTTGAAA
1 GAAATGGTATACTTTGTGTATACCATTTGAAAAGAAAAGGTACACTCTGAGTGTACCACTGGAAA
*
7120809 AG
66 AC
* * *
7120811 GAAA-GGTATACTTTGTGTGTACCATTTGAAAA-AGAAATGTACAC-CTTGAGTGTACTACTGGA
1 GAAATGGTATACTTTGTGTATACCATTTGAAAAGA-AAAGGTACACTC-TGAGTGTACCACTGGA
7120873 AAAC
64 AAAC
7120877 GAAAT
1 GAAAT
7120882 ATCCATCGAT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
65 2 0.03
66 53 0.90
67 4 0.07
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (67 bp):
GAAATGGTATACTTTGTGTATACCATTTGAAAAGAAAAGGTACACTCTGAGTGTACCACTGGAAA
AC
Found at i:7123531 original size:9 final size:8
Alignment explanation
Indices: 7123519--7123567 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
7123509 CCTTTTCAGC
7123519 TTTTTTTA
1 TTTTTTTA
7123527 TTTTTTTA
1 TTTTTTTA
7123535 -TTTTTT-
1 TTTTTTTA
* *
7123541 CTTTTTCA
1 TTTTTTTA
7123549 TTTTTTTA
1 TTTTTTTA
7123557 TTTATTTTA
1 TTT-TTTTA
7123566 TT
1 TT
7123568 ATATAAAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
7 11 0.31
8 17 0.49
9 7 0.20
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7123545 original size:31 final size:31
Alignment explanation
Indices: 7123505--7123567 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 31
7123495 CTGCCTTTTC
7123505 TTTTCC-TTTTCAGCTTTTTTTATTT-TTTTAT
1 TTTTCCTTTTTCA--TTTTTTTATTTATTTTAT
*
7123536 TTTTTCTTTTTCATTTTTTTATTTATTTTAT
1 TTTTCCTTTTTCATTTTTTTATTTATTTTAT
7123567 T
1 T
7123568 ATATAAAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 11 0.38
31 12 0.41
32 6 0.21
ACGTcount: A:0.11, C:0.10, G:0.02, T:0.78
Consensus pattern (31 bp):
TTTTCCTTTTTCATTTTTTTATTTATTTTAT
Found at i:7123555 original size:30 final size:32
Alignment explanation
Indices: 7123505--7123567 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
7123495 CTGCCTTTTC
7123505 TTTTCCTTTTCAGCTTTTTTTATTT-TTTTATT
1 TTTTCCTTTTCA-CTTTTTTTATTTATTTTATT
*
7123537 TTTTCTTTTTCA-TTTTTTTATTTATTTTATT
1 TTTTCCTTTTCACTTTTTTTATTTATTTTATT
7123568 ATATAAAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 11 0.38
31 7 0.24
32 11 0.38
ACGTcount: A:0.11, C:0.10, G:0.02, T:0.78
Consensus pattern (32 bp):
TTTTCCTTTTCACTTTTTTTATTTATTTTATT
Found at i:7135925 original size:75 final size:75
Alignment explanation
Indices: 7135798--7135944 Score: 181
Period size: 75 Copynumber: 2.0 Consensus size: 75
7135788 ACAGCTCTTA
** * *** *
7135798 TGAGCTTCCTGATACTTTGCTCTCATGAGCTTCCCAATATTTGGCTCTCATGAGCTTCCCGATTA
1 TGAGCTTCCTGATAAATGGCTCTCATGAGCTTCCCAATATACAGCTCACATGAGCTT-CCGATTA
7135863 -ATGGCTCTCT
65 TATGGCTCTCT
* *
7135873 TGAGCTTCCTGATAAATGGCTCGT-ATGAGCTTCCCGATATACAGCTCACATGAGCTTCCTATTA
1 TGAGCTTCCTGATAAATGGCTC-TCATGAGCTTCCCAATATACAGCTCACATGAGCTTCCGATTA
7135937 TATGGCTC
65 TATGGCTC
7135945 AAAAGAGGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
74 6 0.10
75 54 0.89
76 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (75 bp):
TGAGCTTCCTGATAAATGGCTCTCATGAGCTTCCCAATATACAGCTCACATGAGCTTCCGATTAT
ATGGCTCTCT
Found at i:7135932 original size:50 final size:49
Alignment explanation
Indices: 7135816--7135944 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 49
7135806 CTGATACTTT
* **
7135816 GCTCTCATGAGCTTCCCAATATTTGGCTCTCATGAGCTTCCCGATTAATG
1 GCTCTCATGAGCTTCCTAATAAATGGCTCTCATGAGCTTCCCGATTAA-G
* *
7135866 GCTCTCTTGAGCTTCCTGATAAATGGCTCGT-ATGAGCTTCCCGATATACA-
1 GCTCTCATGAGCTTCCTAATAAATGGCTC-TCATGAGCTTCCCGAT-TA-AG
* * *
7135916 GCTCACATGAGCTTCCTATTATATGGCTC
1 GCTCTCATGAGCTTCCTAATAAATGGCTC
7135945 AAAAGAGGTT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
50 62 0.94
51 3 0.05
52 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (49 bp):
GCTCTCATGAGCTTCCTAATAAATGGCTCTCATGAGCTTCCCGATTAAG
Found at i:7135945 original size:25 final size:24
Alignment explanation
Indices: 7135791--7135944 Score: 116
Period size: 25 Copynumber: 6.2 Consensus size: 24
7135781 ACACACCACA
* *
7135791 GCTCTTATGAGCTTCCTGATACT-TT
1 GCTCTCATGAGCTTCC-GATA-TATG
* *
7135816 GCTCTCATGAGCTTCCCAATATTTG
1 GCTCTCATGAGCTT-CCGATATATG
7135841 GCTCTCATGAGCTTCCCGAT-TAATG
1 GCTCTCATGAGCTT-CCGATAT-ATG
* *
7135866 GCTCTCTTGAGCTTCCTGATAAATG
1 GCTCTCATGAGCTTCC-GATATATG
**
7135891 GCTCGT-ATGAGCTTCCCGATATACA
1 GCTC-TCATGAGCTT-CCGATATATG
* *
7135916 GCTCACATGAGCTTCCTATTATATG
1 GCTCTCATGAGCTTCCGA-TATATG
7135941 GCTC
1 GCTC
7135945 AAAAGAGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
24 7 0.07
25 93 0.89
26 5 0.05
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCGATATATG
Found at i:7138235 original size:14 final size:14
Alignment explanation
Indices: 7138194--7138242 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 14
7138184 TAATATATTA
*
7138194 TAAAATATAAAGAT
1 TAAAATATAAAAAT
7138208 TAAATTATATTAAAAAT
1 TAAA--ATA-TAAAAAT
7138225 TAAAATATAAAAAT
1 TAAAATATAAAAAT
7138239 TAAA
1 TAAA
7138243 TCTTAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 15 0.48
15 3 0.10
16 3 0.10
17 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (14 bp):
TAAAATATAAAAAT
Found at i:7145919 original size:3 final size:3
Alignment explanation
Indices: 7145913--7145944 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7145903 TAATAGTAAT
7145913 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7145945 TATCCAATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7148403 original size:21 final size:21
Alignment explanation
Indices: 7148378--7148418 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7148368 ATATAAACAC
*
7148378 ATACTTTTACCTCCATTTATG
1 ATACTTTAACCTCCATTTATG
*
7148399 ATACTTTAACCTTCATTTAT
1 ATACTTTAACCTCCATTTAT
7148419 ATTATTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (21 bp):
ATACTTTAACCTCCATTTATG
Found at i:7152390 original size:35 final size:36
Alignment explanation
Indices: 7152316--7152392 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
7152306 TGTAACATTA
7152316 AAAAATATATTTAATATTTTATATTAAAATTTTAAT
1 AAAAATATATTTAATATTTTATATTAAAATTTTAAT
* *
7152352 AAAAATATA-TTAA-ATTATTAT-TTATATATTTTTAT
1 AAAAATATATTTAATATT-TTATATTA-AAATTTTAAT
7152387 AAAAAT
1 AAAAAT
7152393 TAAAATTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
34 6 0.16
35 22 0.59
36 9 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (36 bp):
AAAAATATATTTAATATTTTATATTAAAATTTTAAT
Found at i:7156284 original size:24 final size:25
Alignment explanation
Indices: 7156256--7156310 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
7156246 TTCTTACATC
* * *
7156256 ATTAAAAGTTTTTAT-AATATATAT
1 ATTAAAAGTTTCTATAAAAATAAAT
7156280 ATT-AAAGTTTCTATAAAAATAAAT
1 ATTAAAAGTTTCTATAAAAATAAAT
7156304 ATTAAAA
1 ATTAAAA
7156311 CTTAGAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 10 0.38
24 13 0.50
25 3 0.12
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
ATTAAAAGTTTCTATAAAAATAAAT
Found at i:7156868 original size:33 final size:33
Alignment explanation
Indices: 7156830--7156894 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
7156820 ATAAATTTAA
*
7156830 AAAATACAATATAT-TAAATATATTAAAAATATT
1 AAAATA-AATATATATAAATAAATTAAAAATATT
* *
7156863 AAAATAAATATATATCAATAAATTGAAAATAT
1 AAAATAAATATATATAAATAAATTAAAAATAT
7156895 GCAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 7 0.25
33 21 0.75
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (33 bp):
AAAATAAATATATATAAATAAATTAAAAATATT
Found at i:7160371 original size:22 final size:23
Alignment explanation
Indices: 7160338--7160383 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7160328 AATTCGTTTG
*
7160338 TCATCTGG-AAAAGTTCTATAGC
1 TCATCTGGAAAAAGGTCTATAGC
7160360 TCAT-TGGAAAAAAGGTCTATAGC
1 TCATCTGG-AAAAAGGTCTATAGC
7160383 T
1 T
7160384 AGTTTGGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 4 0.19
23 14 0.67
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (23 bp):
TCATCTGGAAAAAGGTCTATAGC
Found at i:7175201 original size:30 final size:30
Alignment explanation
Indices: 7175166--7175223 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
7175156 TAAGCACTTC
7175166 CACACGGGTGAT-CCACACGCCCGTGTGTGA
1 CACACGGGT-ATACCACACGCCCGTGTGTGA
7175196 CACACGGGTATACCACACGCCCGTGTGT
1 CACACGGGTATACCACACGCCCGTGTGT
7175224 CATGGCCGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (30 bp):
CACACGGGTATACCACACGCCCGTGTGTGA
Found at i:7176407 original size:19 final size:20
Alignment explanation
Indices: 7176371--7176408 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7176361 ATTTTTATTT
*
7176371 AATTTTGTTTTGATTTACTA
1 AATTTTCTTTTGATTTACTA
7176391 AATTTTCTTTT-ATTTACT
1 AATTTTCTTTTGATTTACT
7176409 TCTAGCAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (20 bp):
AATTTTCTTTTGATTTACTA
Found at i:7180826 original size:47 final size:47
Alignment explanation
Indices: 7180772--7180866 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
7180762 CAAACATGAT
7180772 GAAATGACTCAAACATATATGCTTTTATGTGAAATATTTGACGTGTG
1 GAAATGACTCAAACATATATGCTTTTATGTGAAATATTTGACGTGTG
7180819 GAAATGACTCAAACATATATGCTTTTATGTGAAATATTTGACGTGTG
1 GAAATGACTCAAACATATATGCTTTTATGTGAAATATTTGACGTGTG
7180866 G
1 G
7180867 GGTATCAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (47 bp):
GAAATGACTCAAACATATATGCTTTTATGTGAAATATTTGACGTGTG
Found at i:7182976 original size:14 final size:14
Alignment explanation
Indices: 7182957--7182990 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
7182947 TATCATCCTC
7182957 TTCTTTTATTTGTT-
1 TTCTTTTATTT-TTA
7182971 TTCTTTTATTTTTA
1 TTCTTTTATTTTTA
7182985 TTCTTT
1 TTCTTT
7182991 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 17 0.89
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (14 bp):
TTCTTTTATTTTTA
Found at i:7183000 original size:23 final size:22
Alignment explanation
Indices: 7182969--7183016 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
7182959 CTTTTATTTG
* * *
7182969 TTTTCTTTTATTTTTATTCTTTC
1 TTTTATTTTAATTTTA-TCTCTC
7182992 TTTTATTTTAATTTTATCTCTC
1 TTTTATTTTAATTTTATCTCTC
7183014 TTT
1 TTT
7183017 ATTCAACCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTATTTTAATTTTATCTCTC
Found at i:7183158 original size:26 final size:26
Alignment explanation
Indices: 7183122--7183176 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
7183112 TGTTTTATTC
*
7183122 TACCATACTGCTTATAGGATCATCCT
1 TACCATACTGCTTATAGAATCATCCT
7183148 TACCATACTGCTTATAGAATCATCCT
1 TACCATACTGCTTATAGAATCATCCT
7183174 TAC
1 TAC
7183177 TCACTATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (26 bp):
TACCATACTGCTTATAGAATCATCCT
Found at i:7187857 original size:16 final size:16
Alignment explanation
Indices: 7187836--7187866 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7187826 TATCCATTAT
7187836 TTTTATTTTGATTTAA
1 TTTTATTTTGATTTAA
7187852 TTTTATTTTGATTTA
1 TTTTATTTTGATTTA
7187867 CTAAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTATTTTGATTTAA
Found at i:7187886 original size:19 final size:20
Alignment explanation
Indices: 7187850--7187887 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7187840 ATTTTGATTT
7187850 AATTTTATTTTGATTTACTA
1 AATTTTATTTTGATTTACTA
*
7187870 AATTTTCTTTT-ATTTACT
1 AATTTTATTTTGATTTACT
7187888 TCTAGCAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
AATTTTATTTTGATTTACTA
Found at i:7191026 original size:46 final size:44
Alignment explanation
Indices: 7190967--7191081 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7190957 ACAGGACAGA
* *
7190967 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7191013 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7191057 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7191082 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7191062 original size:44 final size:45
Alignment explanation
Indices: 7190967--7191100 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7190957 ACAGGACAGA
* *
7190967 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7191013 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7191057 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7191101 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7196978 original size:46 final size:44
Alignment explanation
Indices: 7196919--7197033 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7196909 ACAGGACAGA
* *
7196919 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7196965 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7197009 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7197034 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7197014 original size:44 final size:45
Alignment explanation
Indices: 7196919--7197052 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7196909 ACAGGACAGA
* *
7196919 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7196965 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7197009 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7197053 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7200569 original size:18 final size:18
Alignment explanation
Indices: 7200546--7200598 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
7200536 CCACCACCAA
7200546 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
7200564 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
7200576 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
7200594 CTCCA
1 CTCCA
7200599 TTATCGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.19
15 2 0.07
16 5 0.19
17 2 0.07
18 8 0.30
ACGTcount: A:0.23, C:0.49, G:0.08, T:0.21
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:7200572 original size:30 final size:30
Alignment explanation
Indices: 7200536--7200598 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
7200526 CTAGCCTTTG
7200536 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
7200566 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7200596 CCA
1 CCA
7200599 TTATCGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:7205177 original size:16 final size:16
Alignment explanation
Indices: 7205158--7205188 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7205148 AGGGCATCTT
*
7205158 AAAAAAAAGAGAAAAG
1 AAAAAAAAAAGAAAAG
7205174 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
7205189 AAAGAGAGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:7205799 original size:22 final size:23
Alignment explanation
Indices: 7205757--7205800 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7205747 GCTAGAGGAT
7205757 GGGTACAGGGCCTAGAAGAGAAG
1 GGGTACAGGGCCTAGAAGAGAAG
7205780 GGGTACAGGGCCT-GAAGAGAA
1 GGGTACAGGGCCTAGAAGAGAA
7205801 AGTCAGAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.34, C:0.14, G:0.43, T:0.09
Consensus pattern (23 bp):
GGGTACAGGGCCTAGAAGAGAAG
Found at i:7206201 original size:13 final size:13
Alignment explanation
Indices: 7206183--7206229 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
7206173 CACGCCGAGG
7206183 TATTTTTAATTTC
1 TATTTTTAATTTC
7206196 TATTTTTTAATTTC
1 TA-TTTTTAATTTC
**
7206210 TGCTTTTAATTTC
1 TATTTTTAATTTC
7206223 TATTTTT
1 TATTTTT
7206230 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:7206204 original size:14 final size:14
Alignment explanation
Indices: 7206185--7206229 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
7206175 CGCCGAGGTA
7206185 TTTTTAATTTCTAT
1 TTTTTAATTTCTAT
*
7206199 TTTTTAATTTCT-G
1 TTTTTAATTTCTAT
*
7206212 CTTTTAATTTCTAT
1 TTTTTAATTTCTAT
7206226 TTTT
1 TTTT
7206230 CAAAAATCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTAATTTCTAT
Found at i:7206324 original size:100 final size:96
Alignment explanation
Indices: 7206126--7206481 Score: 421
Period size: 100 Copynumber: 3.7 Consensus size: 96
7206116 CAATTTATGC
* * * * *
7206126 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
* *
7206191 ATTTCTATTTTTTAATTTCTGCTTTTAATTTCTA
66 ATTTCTGTTTTTTAATTTATGC--TTAA-TTCTA
7206225 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
7206289 AATTTCTGTTTTTCAATTTTTGCCTTACAAATTCTA
65 AATTTCTGTTTTTTAATTTATG-CTT---AATTCTA
7206325 CTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
7206388 AATTT-TCGTTTTTTTAATTTATG--T--TTCTA
65 AATTTCT-G-TTTTTTAATTTATGCTTAATTCTA
* * *
7206417 ----AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
7206478 ATTT
66 ATTT
7206482 TTTTTGTCAA
Statistics
Matches: 234, Mismatches: 13, Indels: 29
0.85 0.05 0.11
Matches are distributed among these distances:
89 60 0.26
92 5 0.02
97 1 0.00
98 42 0.18
99 57 0.24
100 67 0.29
101 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (96 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTGTTTTTTAATTTATGCTTAATTCTA
Found at i:7206594 original size:147 final size:148
Alignment explanation
Indices: 7206398--7207007 Score: 781
Period size: 147 Copynumber: 4.1 Consensus size: 148
7206388 AATTTTCGTT
* * * * *
7206398 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
7206462 CGCTGAGGTAATTTCAATTT-T-TTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTCAATTTCTGTTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
*
7206524 CCTCAAGACACGTTGAGGTA
131 CCTCAAG--ACGCTGAGGTA
* * *
7206544 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
7206609 CGCTGAGGTAATTTCAATTTTTG-TTTGTC-AAAAATCAACT-ATATTGTGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTCAATTTCTGTTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
*
7206671 CCTCAAGACACGTTGAGGTA
131 CCTCAAG--ACGCTGAGGTA
* * * *
7206691 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
7206756 CGTTGAGGTATTTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
66 CGCTGAGGTAATTTCAATTTCTGTTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
7206821 ACCTCAAGACGCTGAGGTA
130 ACCTCAAGACGCTGAGGTA
* * *
7206840 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
7206903 CGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTCTGTTTTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
7206967 AACCTCAAGACGCTGAGGTG
129 AACCTCAAGACGCTGAGGTA
* *
7206987 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
7207008 TTTCTGTGTT
Statistics
Matches: 414, Mismatches: 40, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
146 16 0.04
147 315 0.76
148 22 0.05
149 24 0.06
150 11 0.03
151 26 0.06
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (148 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTCTGTTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
CCTCAAGACGCTGAGGTA
Done.