Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 270 of 425
Found at i:83059320 original size:27 final size:27
Alignment explanation
Indices: 83059290--83059344 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
83059280 TCACACAAGT
83059290 TAGTCATTT-ACACACGAGAGGGCAAAA
1 TAGTCATTTAACACACGAG-GGGCAAAA
* *
83059317 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
83059344 T
1 T
83059345 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:83059375 original size:27 final size:27
Alignment explanation
Indices: 83059345--83059462 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
83059335 GGGGCAAAAT
* * *
83059345 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
83059372 GGTAATTCTACCATAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83059398 GGTATTTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
83059425 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
83059452 GGTAATTCTAC
1 GGTAATTCTAC
83059463 AACTTATCCA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.30
27 54 0.70
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:83059433 original size:53 final size:54
Alignment explanation
Indices: 83059349--83059462 Score: 162
Period size: 53 Copynumber: 2.1 Consensus size: 54
83059339 CAAAATGGTA
*
83059349 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCATACA-GGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCGGT
* *
83059401 ATTTCTACCCTACAAGGGTAT-TCCAGTAATTCTACCTTACAGGGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCT-CAGTAATTCTACCATACAGGGGTATTTCGGT
*
83059455 AATTCTAC
1 ATTTCTAC
83059463 AACTTATCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
52 5 0.09
53 31 0.56
54 19 0.35
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (54 bp):
ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCGGT
Found at i:83064287 original size:27 final size:26
Alignment explanation
Indices: 83064248--83064381 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
83064238 ATACCCCAAG
*
83064248 TTGTAAAATTACCAAAGTACCCTCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * * *
83064275 TTATAAAACTACCTAAATATCCTTGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
*
83064302 TTGTAAAATTACTGAAATACCCTC-AGT
1 TTGTAAAATTAC-CAAATACCCTCGA-T
* *
83064329 TTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
83064356 TTGTAAAATTATCAAAGTACCCTCGA
1 TTGTAAAATTACCAAA-TACCCTCGA
83064382 ATTAAAAAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
26 4 0.04
27 81 0.91
28 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:83064312 original size:54 final size:54
Alignment explanation
Indices: 83064220--83064380 Score: 175
Period size: 54 Copynumber: 3.0 Consensus size: 54
83064210 GAATACTTTA
* * * *
83064220 GTTTATCAAATTACTGAAATACCC-CAAGTTGTAAAATTACCAAAGTACCCTCG
1 GTTTATAAAACTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCG
* * * * *
83064273 GTTTATAAAACTACCT-AAATATCCTTGATTTGTAAAATTACTGAAA-TACCCTCA
1 GTTTATAAAACTA-CTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCTCG
* * *
83064327 GTTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTCG
1 GTTTATAAAACTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCG
83064381 AATTAAAAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
53 23 0.26
54 61 0.70
55 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (54 bp):
GTTTATAAAACTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCG
Found at i:83064390 original size:27 final size:26
Alignment explanation
Indices: 83064333--83064394 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
83064323 CTCAGTTTGT
* * **
83064333 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTA-TCAAATACCCTCGAATTAA
83064360 AAAATTATCAAAGTACCCTCGAATTAA
1 AAAATTATCAAA-TACCCTCGAATTAA
83064387 AAAATTAT
1 AAAATTAT
83064395 TGTTTACCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTATCAAATACCCTCGAATTAA
Found at i:83064391 original size:81 final size:80
Alignment explanation
Indices: 83064227--83064393 Score: 178
Period size: 81 Copynumber: 2.1 Consensus size: 80
83064217 TTAGTTTATC
**
83064227 AAATTACTGAAATACCCCAAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAACTACCTAAA
1 AAATTACTGAAATACCCCAAGTTGTAAAATTACCAAAGTACCCTCGACTTATAAAACTACCTAAA
* * * **
83064292 TATCCTTGATTTGTA
66 TACCCTCGAATTAAA
* * * *
83064307 AAATTACTGAAATACCCTC-AGTTTGTAAAATTACTGAAA-TACCCTCGACTTGTAAAATTATC-
1 AAATTACTGAAATACCC-CAAG-TTGTAAAATTAC-CAAAGTACCCTCGACTTATAAAACTACCT
83064369 AAAGTACCCTCGAATTAAA
63 AAA-TACCCTCGAATTAAA
83064388 AAATTA
1 AAATTA
83064394 TTGTTTACCC
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
80 22 0.31
81 47 0.65
82 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTACTGAAATACCCCAAGTTGTAAAATTACCAAAGTACCCTCGACTTATAAAACTACCTAAA
TACCCTCGAATTAAA
Found at i:83064437 original size:27 final size:27
Alignment explanation
Indices: 83064373--83064808 Score: 491
Period size: 27 Copynumber: 16.2 Consensus size: 27
83064363 ATTATCAAAG
* * * *
83064373 TACCCTCGAATTAAAAAATTATTG-TT
1 TACCCTCGATTTACAGAATTACTGTTT
*
83064399 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
** *
83064426 TACCCTTAATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
** *
83064453 TACCCTTAATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
83064480 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
83064507 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
83064534 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
83064561 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
83064588 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
83064615 TACCCTTGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
83064642 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
83064669 TACCCTCGATTTACAGAATTACTATCT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
83064696 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
83064723 TACCCTCGACTAACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
83064750 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
83064777 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
83064804 TACCC
1 TACCC
83064809 CTAGGGTGTT
Statistics
Matches: 355, Mismatches: 52, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
26 20 0.06
27 335 0.94
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:83065350 original size:6 final size:6
Alignment explanation
Indices: 83065313--83065437 Score: 51
Period size: 6 Copynumber: 20.3 Consensus size: 6
83065303 TGGCATTCAC
* * * *
83065313 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
83065361 ATCACCTA ATTCTG ATTCTG GTTCTG ATTTTG -TCACCTG ATCCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
83065412 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
83065438 AATTTTTCTT
Statistics
Matches: 89, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
5 6 0.07
6 71 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83065360 original size:31 final size:31
Alignment explanation
Indices: 83065325--83065416 Score: 112
Period size: 31 Copynumber: 3.0 Consensus size: 31
83065315 TCTAATTTTG
*
83065325 ATTCTGTTACCTGATACTGATTCTGATTCTA
1 ATTCTGTCACCTGATACTGATTCTGATTCTA
* * * * *
83065356 ATTCTATCACCTAATTCTGATTCTGGTTCTG
1 ATTCTGTCACCTGATACTGATTCTGATTCTA
* *
83065387 ATTTTGTCACCTGATCCTGATTCTGATTCT
1 ATTCTGTCACCTGATACTGATTCTGATTCT
83065417 CATTTTGATT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGATTCTGATTCTA
Found at i:83068665 original size:79 final size:80
Alignment explanation
Indices: 83068522--83068729 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
83068512 ACCTTCGGAG
* * ** * * * *
83068522 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
83068586 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
83068601 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
83068663 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
83068680 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
83068730 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:83068674 original size:40 final size:40
Alignment explanation
Indices: 83068622--83068729 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
83068612 TATCACGATT
** *
83068622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
83068662 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
83068702 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
83068730 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:83076788 original size:79 final size:80
Alignment explanation
Indices: 83076645--83076852 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
83076635 ACCTTCGGAG
* * ** * * * *
83076645 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
83076709 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
83076724 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
83076786 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
83076803 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
83076853 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:83076797 original size:40 final size:40
Alignment explanation
Indices: 83076745--83076852 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
83076735 TATCACGATT
** *
83076745 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
83076785 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
83076825 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
83076853 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:83082144 original size:40 final size:40
Alignment explanation
Indices: 83082090--83082273 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
83082080 CTCGCACAAG
* *
83082090 GCCTT-GGGTCTTAGCCCGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAG-TCACTAGCACAAAT
* *
83082129 GCCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
** * * * *
83082169 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
83082209 GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
83082250 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
83082274 CATTCGAATA
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 7 0.06
40 82 0.69
41 26 0.22
42 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:83082205 original size:80 final size:81
Alignment explanation
Indices: 83082090--83082273 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 81
83082080 CTCGCACAAG
*
83082090 GCCTT-GGGTCTTAGCCCGGATATGATCACTAGCATAAATGCCTTCGGGA-CTTAG-CCTGGATA
1 GCCTTCGGGTCTTAGCCCGGATATGATAACTAGCATAAATGCCTTC-GGATCTTAGTCC-GGATA
* * *
83082152 TAGTCGC-TAGCACAAAT
64 TAGTCACTTAACACAAAA
* * *
83082169 GCCTTCGGGTTTTGGCCCGGATAT-AGTAACTCGCATAAATGCCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATGA-TAACTAGCATAAATGCCTTCGGATCTTAGTCCGGATAT
83082233 AGTCACTTAACACAAAA
65 AGTCACTTAACACAAAA
*
83082250 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
83082274 CATTCGAATA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
79 9 0.10
80 50 0.56
81 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATGATAACTAGCATAAATGCCTTCGGATCTTAGTCCGGATATA
GTCACTTAACACAAAA
Found at i:83112773 original size:20 final size:20
Alignment explanation
Indices: 83112750--83112794 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
83112740 AGGGACTAAA
*
83112750 ATGAAAAGTTGTAAAATTTT
1 ATGAAAAGTTCTAAAATTTT
*
83112770 ATGAAAATTTCTAAAATTTT
1 ATGAAAAGTTCTAAAATTTT
83112790 ATGAA
1 ATGAA
83112795 TACATGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTT
Found at i:83116262 original size:31 final size:31
Alignment explanation
Indices: 83116221--83116284 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
83116211 CCTTTTCATA
*
83116221 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
** *
83116252 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
83116283 TT
1 TT
83116285 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:83116531 original size:24 final size:24
Alignment explanation
Indices: 83116479--83116644 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
83116469 GCTTTATCAT
*
83116479 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
83116504 ATAACTAGGGCAAAATCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
83116528 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83116551 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
83116575 TTAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83116599 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83116622 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83116645 TCACTTCCTC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 44 0.36
24 69 0.56
25 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:83116555 original size:47 final size:48
Alignment explanation
Indices: 83116478--83116644 Score: 225
Period size: 47 Copynumber: 3.5 Consensus size: 48
83116468 TGCTTTATCA
* * * *
83116478 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAATCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
83116527 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
83116574 GT-TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTT
1 -TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
83116621 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
83116645 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
47 66 0.62
48 28 0.26
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:83116596 original size:71 final size:71
Alignment explanation
Indices: 83116479--83116644 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
83116469 GCTTTATCAT
* * *
83116479 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAATCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
83116543 GCCCTTTA
64 GCCCTTTA
* ** * *
83116551 ATAACTGGGGCGTAAGCCCTTTTGTTAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
83116616 CCTTTA
66 CCTTTA
83116622 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83116645 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 73 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:83116718 original size:20 final size:20
Alignment explanation
Indices: 83116693--83116753 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
83116683 TTATGAATAC
83116693 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83116713 ATCA--TG----TCATACAT
1 ATCATGTGCATATCATACAT
*
83116727 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83116747 ACCATGT
1 ATCATGT
83116754 TTATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 12
0.68 0.06 0.26
Matches are distributed among these distances:
14 11 0.34
16 2 0.06
18 2 0.06
20 17 0.53
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83116724 original size:14 final size:14
Alignment explanation
Indices: 83116705--83116743 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
83116695 CATGTGCATA
83116705 TCATACATATCATG
1 TCATACATATCATG
*
83116719 TCATACATGTCATG
1 TCATACATATCATG
83116733 TGCATATCATA
1 T-CATA-CATA
83116744 CATACCATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 14 0.67
15 4 0.19
16 3 0.14
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (14 bp):
TCATACATATCATG
Found at i:83124381 original size:30 final size:31
Alignment explanation
Indices: 83124341--83124403 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
83124331 CCTTTTCATA
*
83124341 TTTCATATTTCATAACACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
83124371 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
83124402 TT
1 TT
83124404 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:83124698 original size:24 final size:24
Alignment explanation
Indices: 83124595--83124759 Score: 230
Period size: 23 Copynumber: 7.0 Consensus size: 24
83124585 GCTTTATCAT
*
83124595 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
83124620 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
83124643 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83124666 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83124690 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
83124714 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83124737 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83124760 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
22 3 0.02
23 58 0.46
24 54 0.43
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:83124729 original size:71 final size:70
Alignment explanation
Indices: 83124595--83124759 Score: 251
Period size: 71 Copynumber: 2.3 Consensus size: 70
83124585 GCTTTATCAT
*
83124595 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
83124659 CCCTTTA
64 CCCTTTA
* * * *
83124666 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTT-ATAACTGGGGCATAAGC
83124731 CCTTTA
65 CCTTTA
83124737 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83124760 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 30 0.34
71 57 0.66
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCC
CTTTA
Found at i:83124833 original size:20 final size:20
Alignment explanation
Indices: 83124808--83124874 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83124798 TTATGAATAC
83124808 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83124828 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83124848 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83124868 ACCATGT
1 ATCATGT
83124875 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83124839 original size:11 final size:11
Alignment explanation
Indices: 83124808--83124863 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83124798 TTATGAATAC
83124808 ATCATGTGCAT
1 ATCATGTGCAT
*
83124819 ATCA--TACAT
1 ATCATGTGCAT
83124828 ATCATGTGCAT
1 ATCATGTGCAT
*
83124839 ATCA--TACAT
1 ATCATGTGCAT
*
83124848 GTCATGTGCAT
1 ATCATGTGCAT
83124859 ATCAT
1 ATCAT
83124864 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:83124943 original size:25 final size:25
Alignment explanation
Indices: 83124911--83124958 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83124901 ATACATAAAC
* * *
83124911 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
83124936 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
83124959 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:83136797 original size:8 final size:8
Alignment explanation
Indices: 83136784--83136814 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
83136774 TGTGAAACGG
*
83136784 GAAAAGCT
1 GAAAAGTT
83136792 GAAAAGTT
1 GAAAAGTT
83136800 GAAAAGTT
1 GAAAAGTT
83136808 GAAAAGT
1 GAAAAGT
83136815 GGGCTGTCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.52, C:0.03, G:0.26, T:0.19
Consensus pattern (8 bp):
GAAAAGTT
Found at i:83141205 original size:20 final size:20
Alignment explanation
Indices: 83141180--83141223 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
83141170 AGGGACTAAA
83141180 ATGAAAAGTTATAAAATTTG
1 ATGAAAAGTTATAAAATTTG
*
83141200 ATGAAAAGTTATGAAATTTG
1 ATGAAAAGTTATAAAATTTG
83141220 ATGA
1 ATGA
83141224 TTACATGTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGAAAAGTTATAAAATTTG
Found at i:83142994 original size:21 final size:22
Alignment explanation
Indices: 83142968--83143021 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
83142958 CGGCCTCAAG
*
83142968 CACGGGCATGTTCCAGGGA-CA
1 CACGGGCATGTCCCAGGGACCA
* **
83142989 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCATGTCCCAGGGACCA
83143011 CACGGGCATGT
1 CACGGGCATGT
83143022 GAACCCTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (22 bp):
CACGGGCATGTCCCAGGGACCA
Found at i:83145721 original size:40 final size:40
Alignment explanation
Indices: 83145676--83145841 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
83145666 CGGAATATAA
83145676 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
83145716 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
83145756 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTA-C
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83145795 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83145834 CCGGATAT
1 CCGGATAT
83145842 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 4 0.04
39 37 0.35
40 66 0.62
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83153744 original size:40 final size:40
Alignment explanation
Indices: 83153699--83153866 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
83153689 CGGAATATAA
83153699 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
83153739 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
83153779 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
83153819 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83153859 CCGGATAT
1 CCGGATAT
83153867 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83157986 original size:48 final size:48
Alignment explanation
Indices: 83157915--83158042 Score: 186
Period size: 48 Copynumber: 2.7 Consensus size: 48
83157905 GGAACTTCAG
* *
83157915 TGATTTGGCTTCTA-GCCATGATATTAGCACTTTGGGTGTGAGATATAT
1 TGATTTGGCTT-TAGGCCATGATATTAGCACTTCGGGTGCGAGATATAT
*
83157963 TGATTTGGCTTTAGGCCATGATATTAGCACTTCGGGTGCGAGATTTAT
1 TGATTTGGCTTTAGGCCATGATATTAGCACTTCGGGTGCGAGATATAT
* **
83158011 TGAGTTGGCTTCGGGCCATGATATTAGCACTT
1 TGATTTGGCTTTAGGCCATGATATTAGCACTT
83158043 AATGTGTGAG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
47 2 0.03
48 71 0.97
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.38
Consensus pattern (48 bp):
TGATTTGGCTTTAGGCCATGATATTAGCACTTCGGGTGCGAGATATAT
Found at i:83159140 original size:34 final size:33
Alignment explanation
Indices: 83159097--83159163 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 33
83159087 TATGTCAGTA
83159097 ACAGTTCAGT-TTCAGT-TAGGGCCTTAGCCCATT
1 ACAGTTCAGTATT-AGTGT-GGGCCTTAGCCCATT
83159130 ACAGTATCAGTATTAGTGTGGGCCTTAGCCCATT
1 ACAGT-TCAGTATTAGTGTGGGCCTTAGCCCATT
83159164 TTAGTGCCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
33 5 0.16
34 23 0.74
35 3 0.10
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (33 bp):
ACAGTTCAGTATTAGTGTGGGCCTTAGCCCATT
Found at i:83163446 original size:25 final size:25
Alignment explanation
Indices: 83163399--83163447 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
83163389 TTATAACATG
* * * *
83163399 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
83163424 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
83163448 TTATGTATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:83163529 original size:11 final size:11
Alignment explanation
Indices: 83163493--83163548 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83163483 CATGGTATGT
83163493 ATGATATGCAC
1 ATGATATGCAC
* *
83163504 ATGACATG--T
1 ATGATATGCAC
83163513 ATGATATGCAC
1 ATGATATGCAC
*
83163524 ATGATATG--T
1 ATGATATGCAC
83163533 ATGATATGCAC
1 ATGATATGCAC
83163544 ATGAT
1 ATGAT
83163549 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:83163548 original size:20 final size:20
Alignment explanation
Indices: 83163482--83163548 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83163472 ATTTTGATAA
*
83163482 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
83163502 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83163522 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83163542 ACATGAT
1 ACATGAT
83163549 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83163623 original size:24 final size:24
Alignment explanation
Indices: 83163596--83163671 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
83163586 GGAGGAAGTG
83163596 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
83163620 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
83163643 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
83163667 TAAAA
1 TAAAA
83163672 CAGGCTAGGC
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 23 0.46
24 27 0.54
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:83163627 original size:23 final size:23
Alignment explanation
Indices: 83163598--83163670 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
83163588 AGGAAGTGTA
83163598 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
83163621 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
83163644 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
83163668 AAA
1 AAA
83163671 ACAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:83163920 original size:31 final size:31
Alignment explanation
Indices: 83163885--83163945 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
83163875 CGTTTACAGT
83163885 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
83163916 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
83163946 AAATATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:83168720 original size:29 final size:28
Alignment explanation
Indices: 83168686--83168788 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 28
83168676 TAATCGATCA
*
83168686 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TCATTTAAGCT
* *
83168715 CGCACACATAGTGCCATATTATTTAAGCT
1 CGCACACTTAGTGCCAT-TCATTTAAGCT
*
83168744 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATTCATTT-AAGCT
*
83168773 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
83168789 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.06
29 62 0.94
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTCATTTAAGCT
Found at i:83176745 original size:29 final size:28
Alignment explanation
Indices: 83176711--83176813 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
83176701 TAATCGATCA
*
83176711 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
83176740 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
83176769 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
83176798 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
83176814 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:83184971 original size:25 final size:25
Alignment explanation
Indices: 83184928--83184975 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83184918 TTATAACATG
* * *
83184928 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCAATATACCCCTAGGTA
83184953 AAAATGACCAATATACCCCTAGG
1 AAAATGACCAATATACCCCTAGG
83184976 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (25 bp):
AAAATGACCAATATACCCCTAGGTA
Found at i:83185059 original size:11 final size:11
Alignment explanation
Indices: 83185023--83185078 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83185013 CATGGTATGT
83185023 ATGATATGCAC
1 ATGATATGCAC
* *
83185034 ATGACATG--T
1 ATGATATGCAC
83185043 ATGATATGCAC
1 ATGATATGCAC
*
83185054 ATGATATG--T
1 ATGATATGCAC
83185063 ATGATATGCAC
1 ATGATATGCAC
83185074 ATGAT
1 ATGAT
83185079 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:83185078 original size:20 final size:20
Alignment explanation
Indices: 83185012--83185078 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83185002 ATTTTGATAA
*
83185012 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
83185032 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83185052 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83185072 ACATGAT
1 ACATGAT
83185079 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83185158 original size:23 final size:23
Alignment explanation
Indices: 83185129--83185200 Score: 144
Period size: 23 Copynumber: 3.1 Consensus size: 23
83185119 AAGAAGTGTA
83185129 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
83185152 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
83185175 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
83185198 AAA
1 AAA
83185201 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:83185450 original size:31 final size:31
Alignment explanation
Indices: 83185415--83185478 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
83185405 CATTTACAGT
83185415 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
83185446 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
83185477 AA
1 AA
83185479 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:83192860 original size:73 final size:73
Alignment explanation
Indices: 83192763--83192909 Score: 258
Period size: 73 Copynumber: 2.0 Consensus size: 73
83192753 AAATATTGTC
* *
83192763 AAACCCTGAAAGATTCTTTGCTACAATCGACCCCAAGAATAGTAAAACGAAAGAACCCGATGAAA
1 AAACCCCGAAAGATTCTTTGCTACAATCGACCCCAAGAAGAGTAAAACGAAAGAACCCGATGAAA
83192828 GAAAAATA
66 GAAAAATA
* *
83192836 AAACCCCGAAAGATTCTTTTCTACAATCGACCCCAAGAAGAGTAAAAGGAAAGAACCCGATGAAA
1 AAACCCCGAAAGATTCTTTGCTACAATCGACCCCAAGAAGAGTAAAACGAAAGAACCCGATGAAA
83192901 GAAAAATA
66 GAAAAATA
83192909 A
1 A
83192910 GGTAACACTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (73 bp):
AAACCCCGAAAGATTCTTTGCTACAATCGACCCCAAGAAGAGTAAAACGAAAGAACCCGATGAAA
GAAAAATA
Found at i:83194046 original size:21 final size:20
Alignment explanation
Indices: 83194011--83194052 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
83194001 CATGTATTAG
*
83194011 ATATTAAATAGATATTTATT
1 ATATTAAAAAGATATTTATT
83194031 ATATTATAAAAGATATTTATT
1 ATATTA-AAAAGATATTTATT
83194052 A
1 A
83194053 CGTAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
ATATTAAAAAGATATTTATT
Found at i:83194089 original size:30 final size:33
Alignment explanation
Indices: 83194027--83194095 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 33
83194017 AATAGATATT
83194027 TATTATATTATAAAAGATATTTATTACGTAAATA
1 TATTATATTAT-AAAGATATTTATTACGTAAATA
*
83194061 -ATTATATTAT-AAGAT-TTTATT-TGATAAATA
1 TATTATATTATAAAGATATTTATTACG-TAAATA
83194091 TATTA
1 TATTA
83194096 AATAATGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 1 0.03
30 12 0.38
31 9 0.28
33 10 0.31
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (33 bp):
TATTATATTATAAAGATATTTATTACGTAAATA
Found at i:83196588 original size:46 final size:46
Alignment explanation
Indices: 83196541--83196767 Score: 251
Period size: 46 Copynumber: 5.0 Consensus size: 46
83196531 GATCTCTGAT
* * *
83196541 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
83196587 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAATATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * * *
83196633 GGGAAATGAATAAGACCATTGTTGAAAGATACAATGTG-AGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATG-GCAACATGAC
* *
83196679 ATGAAATGAATAAGACCATGGCTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
83196725 A-AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
83196768 TCAAAGATAA
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
45 36 0.24
46 115 0.76
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:83198919 original size:40 final size:40
Alignment explanation
Indices: 83198872--83198977 Score: 167
Period size: 40 Copynumber: 2.6 Consensus size: 40
83198862 TGACGACAAC
*
83198872 TCAGCTATGTATGGCACTTAGTGTGCGGTTCAAGATAGCT
1 TCAGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCT
* *
83198912 TCGGCTATGTATGGCACTTCGTGTGCGATTCAAGATAGCT
1 TCAGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCT
*
83198952 TCAGCTATGTATTGGCACCTAGTGTG
1 TCAGCTATGTA-TGGCACTTAGTGTG
83198978 AGAGAATTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 47 0.80
41 12 0.20
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (40 bp):
TCAGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCT
Found at i:83201264 original size:40 final size:40
Alignment explanation
Indices: 83201209--83201458 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
83201199 AACATTGGAA
83201209 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83201249 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83201289 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83201329 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83201369 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83201408 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83201449 CTATATCCGG
1 ATATATCCGG
83201459 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83209436 original size:40 final size:40
Alignment explanation
Indices: 83209381--83209627 Score: 358
Period size: 40 Copynumber: 6.2 Consensus size: 40
83209371 AACATTGGAA
83209381 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83209421 ATATATCCGGGCTAAGA--CGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83209459 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83209498 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83209538 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83209577 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83209618 CTATATCCGG
1 ATATATCCGG
83209628 TTAAATCCCG
Statistics
Matches: 186, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 38 0.20
39 40 0.22
40 108 0.58
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83211772 original size:40 final size:40
Alignment explanation
Indices: 83211664--83211873 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83211654 CGGGATTTAA
* * * * *
83211664 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83211704 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83211744 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83211784 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83211824 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83211864 CCGGATATAT
1 CCGGATATAT
83211874 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83219903 original size:40 final size:40
Alignment explanation
Indices: 83219795--83220004 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83219785 CGGGATTTAA
* * * * *
83219795 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83219835 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83219875 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83219915 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83219955 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83219995 CCGGATATAT
1 CCGGATATAT
83220005 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83223288 original size:40 final size:40
Alignment explanation
Indices: 83223233--83223350 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
83223223 GGAAAAAAAA
83223233 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
83223273 TATAACCGGGTTAAGTCCCGAAGGCATTCATGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
83223313 TATAACTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
83223351 GTTACATCCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:83226435 original size:27 final size:27
Alignment explanation
Indices: 83226416--83226626 Score: 242
Period size: 27 Copynumber: 7.8 Consensus size: 27
83226406 ATTACCAAAG
* *
83226416 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
** * **
83226443 TACCCTAAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
83226470 TACCCACGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
83226497 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
83226524 TGCCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
83226551 TACCCTCGATTTATAGAATTATCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
* *
83226578 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
83226605 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
83226627 TAAAATACCC
Statistics
Matches: 158, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:83226636 original size:54 final size:54
Alignment explanation
Indices: 83226416--83226655 Score: 243
Period size: 54 Copynumber: 4.4 Consensus size: 54
83226406 ATTACCAAAG
* * ** **
83226416 TACCCTCGATTTACAGAATTACCGTTCTACCCTAAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATT
* *
83226470 TACCCACGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACT-AATT
* * * **
83226524 TGCCATCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTA-TCGTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATT
* * * * **
83226577 CTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
1 -TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATT
* *
83226632 TACCCTTGGTTTACA-ACATTACCA
1 TACCCTCGATTTACAGA-ATTACCA
83226656 AAATACCCTC
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.03
54 151 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAATT
Found at i:83226933 original size:27 final size:27
Alignment explanation
Indices: 83226578--83226931 Score: 356
Period size: 27 Copynumber: 13.2 Consensus size: 27
83226568 ATTATCGTTC
* * ****
83226578 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
83226605 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*
83226632 TACCCTTGGTTTACAACATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * *
83226659 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* ** *
83226686 TATCCC-AGGTTTGTAAAATTACTAAAA
1 TA-CCCTTGGTTTACAAAATTACCAAAA
* ** *
83226713 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
83226740 TACCATTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*
83226767 TACCCTTGGTTT-GAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
83226793 TACCCTTGGTTTACAAAGTTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
83226820 TACCCCTAGTTTGCAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
83226847 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
83226874 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
83226901 TACCCTTGGTTTACAAAATTACC-AAA
1 TACCCTTGGTTTACAAAATTACCAAAA
83226927 TACCC
1 TACCC
83226932 CTAATTTGTG
Statistics
Matches: 277, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
26 40 0.14
27 232 0.84
28 5 0.02
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:83226961 original size:161 final size:161
Alignment explanation
Indices: 83226619--83226946 Score: 430
Period size: 161 Copynumber: 2.0 Consensus size: 161
83226609 CTCGATTTAC
* * *
83226619 AAAATTACTAAAATACCCTTGGTTTACAACATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTACAACATTACCAAAATACCCTAGATCAGCAAAATTACCAA
** * * *
83226684 AATATCCCAGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGG
66 AATATCCCAGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTGG
* **
83226749 TTTATAAAATTACCAAAATACCCTTGGTTTG
131 TTTACAAAATTACCAAAATACCCTAAGTTTG
* **
83226780 AAAATTACCAAAATACCCTTGGTTTACAA-AGTTACCGAAATACCCCTAG-TTTGCAAAATTACC
1 AAAATTACCAAAATACCCTTGGTTTACAACA-TTACCAAAATA-CCCTAGATCAGCAAAATTACC
* *
83226843 AAAATA-CCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCT
64 AAAATATCCC-AGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAT
*
83226907 TGGTTTACAAAATTACC-AAATACCCCTAATTTGTG
128 TGGTTTACAAAATTACCAAAATA-CCCTAAGTT-TG
83226942 AAAAT
1 AAAAT
83226947 ATTGAAATAC
Statistics
Matches: 145, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
160 9 0.06
161 124 0.86
162 12 0.08
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (161 bp):
AAAATTACCAAAATACCCTTGGTTTACAACATTACCAAAATACCCTAGATCAGCAAAATTACCAA
AATATCCCAGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTGG
TTTACAAAATTACCAAAATACCCTAAGTTTG
Found at i:83226981 original size:27 final size:27
Alignment explanation
Indices: 83226951--83227004 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
83226941 GAAAATATTG
* * *
83226951 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTACGATAGAAATACCA
*
83226978 AAATACCCCTGTACGATAGAATTACCA
1 AAATACCCCTGTACGATAGAAATACCA
83227005 TTTTGCCCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTACGATAGAAATACCA
Found at i:83228426 original size:43 final size:43
Alignment explanation
Indices: 83228374--83228517 Score: 225
Period size: 43 Copynumber: 3.3 Consensus size: 43
83228364 AGCATTTTTT
83228374 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
* *
83228417 CACAAACGCCGCTACAGACCATGACCTTTAGCGGCGCTTTCCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
** * * *
83228460 CGTAAATGCCACTAAAAACCATGACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
83228503 CACAAACGCCGCTAA
1 CACAAACGCCGCTAA
83228518 GGAATATAAC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.20
Consensus pattern (43 bp):
CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
Found at i:83230697 original size:40 final size:40
Alignment explanation
Indices: 83230638--83230799 Score: 220
Period size: 40 Copynumber: 4.0 Consensus size: 40
83230628 CGGATGATAA
* * *
83230638 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA-T
*
83230678 CCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
* *
83230718 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
* *
83230758 CTGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTA-CTATAT
83230798 CC
1 CC
83230800 AGCTAAATCC
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.02
40 105 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
Found at i:83230773 original size:80 final size:80
Alignment explanation
Indices: 83230638--83230815 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 80
83230628 CGGATGATAA
* *
83230638 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCAAAGGCATTTG
*
83230703 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* * *
83230718 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGCCCCAAAGGCATTT
83230782 GAGCGAGTAGCTATAT
65 GAGCGAGTAGCTATAT
* *
83230798 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
83230816 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 18 0.20
80 70 0.80
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCAAAGGCATTTG
AGCGAGTAGCTATAT
Found at i:83235690 original size:2 final size:2
Alignment explanation
Indices: 83235683--83235715 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
83235673 AATTGATATT
83235683 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
83235716 TAACAGGACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83236026 original size:14 final size:14
Alignment explanation
Indices: 83236007--83236049 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
83235997 TCAAAGGGAT
83236007 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
*
83236021 GGAGATTTAGAGAT
1 GGAGATTTAGAGAA
83236035 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
83236049 G
1 G
83236050 TAAGAAATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (14 bp):
GGAGATTTAGAGAA
Found at i:83236134 original size:14 final size:14
Alignment explanation
Indices: 83236115--83236144 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83236105 AATGGTGGAA
*
83236115 GGATTTTGATTTGG
1 GGATTTCGATTTGG
83236129 GGATTTCGATTTGG
1 GGATTTCGATTTGG
83236143 GG
1 GG
83236145 GAAAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.40, T:0.43
Consensus pattern (14 bp):
GGATTTCGATTTGG
Found at i:83237265 original size:17 final size:17
Alignment explanation
Indices: 83237239--83237273 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
83237229 AGGGGTTATA
* *
83237239 TTTAGTATTTAGGTGTT
1 TTTAGGATTTAGGGGTT
83237256 TTTAGGATTTAGGGGTT
1 TTTAGGATTTAGGGGTT
83237273 T
1 T
83237274 AGTGTTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (17 bp):
TTTAGGATTTAGGGGTT
Found at i:83237543 original size:41 final size:41
Alignment explanation
Indices: 83237343--83237527 Score: 300
Period size: 41 Copynumber: 4.5 Consensus size: 41
83237333 ATTATATGAC
*
83237343 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
**
83237384 TTTTAGCGGCGTTTTACCAAAAGCGCTTCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
83237425 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
83237466 TTTTAGCAGCGTTTTACCAAAAACGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
83237506 TTTTAACGGCGTTTTACCAAAA
1 TTTTAGCGGCGTTTTACCAAAA
83237528 ACCGCTGCTA
Statistics
Matches: 134, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 21 0.16
41 113 0.84
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:83241105 original size:30 final size:30
Alignment explanation
Indices: 83241071--83241130 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83241061 TTCCCGAGCC
*
83241071 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
83241101 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
83241131 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:83247584 original size:49 final size:50
Alignment explanation
Indices: 83247517--83247763 Score: 266
Period size: 49 Copynumber: 5.0 Consensus size: 50
83247507 AGCTATTGTG
* *
83247517 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTT
* * * * *
83247567 -GGTCGCATGTGTAGTACTAAGTGCT-GGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTG-TAGGCTACTACGTGTACCAGAT-AGTT
* * * * * * *
83247617 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTT
* * *
83247667 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTT
* * * *
83247717 -GGTCTCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAG
83247764 CTTCGGCTCC
Statistics
Matches: 162, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
49 80 0.49
50 48 0.30
51 34 0.21
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTT
Found at i:83247714 original size:101 final size:98
Alignment explanation
Indices: 83247520--83247749 Score: 307
Period size: 100 Copynumber: 2.3 Consensus size: 98
83247510 TATTGTGAGG
* * * *
83247520 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAAATGGTTGGTCACATGTGTAGTACT
* * *
83247585 AAGTGCTGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* *
83247620 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAAATGGTT-GGTCACATGTGTAGTAC
* *
83247685 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * *
83247719 TCTCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTA
83247750 TGCGTACCAG
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.25
100 45 0.39
101 41 0.36
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAAATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:83251847 original size:47 final size:48
Alignment explanation
Indices: 83251758--83251885 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 48
83251748 TCAAGGAATA
* *
83251758 AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGACTACGAGATGAT-
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATG-TG
* *
83251804 AGTCAATGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGATGTG
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGTG
* * * *
83251851 AGCCAGTGTAAGACCATGCCCGGAACATGGCATCG
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCG
83251886 GCACCTTACC
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 12 0.17
47 49 0.70
48 9 0.13
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGTG
Found at i:83259359 original size:23 final size:26
Alignment explanation
Indices: 83259310--83259360 Score: 63
Period size: 23 Copynumber: 2.1 Consensus size: 26
83259300 CACAACATTT
* *
83259310 ATTAACATTTTGAAATGGATAACATA
1 ATTAACATTTTGAAATGCATAAAATA
83259336 ATTAACA-TTT-AAA-GCATAAAATA
1 ATTAACATTTTGAAATGCATAAAATA
83259359 AT
1 AT
83259361 GAACTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 10 0.43
24 3 0.13
25 3 0.13
26 7 0.30
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (26 bp):
ATTAACATTTTGAAATGCATAAAATA
Found at i:83262293 original size:28 final size:29
Alignment explanation
Indices: 83262261--83262375 Score: 164
Period size: 29 Copynumber: 4.0 Consensus size: 29
83262251 TACCTGTATC
*
83262261 TGGCCCATTAGGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
83262289 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
83262318 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
83262347 TGGCCCGTTAGGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
83262375 T
1 T
83262376 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
28 29 0.37
29 49 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:83262313 original size:57 final size:57
Alignment explanation
Indices: 83262252--83262367 Score: 180
Period size: 57 Copynumber: 2.0 Consensus size: 57
83262242 AATTTCACAT
* *
83262252 ACCTGTATCTGGCCCATTAGGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCC-AATC
* *
83262309 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
83262366 AC
1 AC
83262368 ATTCATATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 29 0.54
58 25 0.46
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
Found at i:83263715 original size:8 final size:8
Alignment explanation
Indices: 83263705--83263744 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
83263695 ATGAAAATTC
*
83263705 GGGATTTC
1 GGGATTTT
83263713 GGGATTTT
1 GGGATTTT
83263721 GGGATTTT
1 GGGATTTT
83263729 GGGATTTT
1 GGGATTTT
83263737 GGGATTTT
1 GGGATTTT
83263745 TAGATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.12, C:0.03, G:0.38, T:0.47
Consensus pattern (8 bp):
GGGATTTT
Found at i:83263750 original size:16 final size:16
Alignment explanation
Indices: 83263705--83263752 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
83263695 ATGAAAATTC
* *
83263705 GGGATTTCGGGATTTT
1 GGGATTTTGAGATTTT
*
83263721 GGGATTTTGGGATTTT
1 GGGATTTTGAGATTTT
*
83263737 GGGATTTTTAGATTTT
1 GGGATTTTGAGATTTT
83263753 AAGATTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.15, C:0.02, G:0.33, T:0.50
Consensus pattern (16 bp):
GGGATTTTGAGATTTT
Found at i:83263750 original size:24 final size:24
Alignment explanation
Indices: 83263705--83263752 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
83263695 ATGAAAATTC
*
83263705 GGGATTTCGGGATTTTGGGATTTT
1 GGGATTTCGGGATTTTGAGATTTT
* *
83263729 GGGATTTTGGGATTTTTAGATTTT
1 GGGATTTCGGGATTTTGAGATTTT
83263753 AAGATTTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.02, G:0.33, T:0.50
Consensus pattern (24 bp):
GGGATTTCGGGATTTTGAGATTTT
Found at i:83263758 original size:24 final size:24
Alignment explanation
Indices: 83263707--83263760 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
83263697 GAAAATTCGG
* * **
83263707 GATTTCGGGATTTTGGGATTTTGG
1 GATTTTGGGATTTTGAGATTTTAA
*
83263731 GATTTTGGGATTTTTAGATTTTAA
1 GATTTTGGGATTTTGAGATTTTAA
83263755 GATTTT
1 GATTTT
83263761 TGGGGCTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
GATTTTGGGATTTTGAGATTTTAA
Found at i:83265401 original size:40 final size:40
Alignment explanation
Indices: 83265356--83265642 Score: 328
Period size: 40 Copynumber: 7.2 Consensus size: 40
83265346 CGGAATACAA
*
83265356 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* * * *
83265396 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* *
83265436 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* * * *
83265476 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* *
83265516 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
* ** *
83265556 CCGGATGTAGTCAC-TAGCAC-AATGGCCTTCGGGTCTTATC
1 CCGGATATAACCACAT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
83265596 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACAT-GCACAAATGCCTTCGGGTCTTAGC
83265636 CCGGATA
1 CCGGATA
83265643 CCATTCAATT
Statistics
Matches: 210, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
39 4 0.02
40 203 0.97
41 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
Found at i:83265489 original size:80 final size:80
Alignment explanation
Indices: 83265356--83265561 Score: 403
Period size: 80 Copynumber: 2.6 Consensus size: 80
83265346 CGGAATACAA
*
83265356 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
83265421 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
83265436 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
83265501 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
83265516 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT
1 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT
83265562 GTAGTCACTA
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 125 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
CCTTCGGGTATTAGC
Found at i:83265576 original size:80 final size:80
Alignment explanation
Indices: 83265356--83265642 Score: 402
Period size: 80 Copynumber: 3.6 Consensus size: 80
83265346 CGGAATACAA
83265356 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
83265421 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
*
83265436 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
83265501 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
* * *
83265516 CCGGATTTAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCAC-AA
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTTGCACAAA
* *
83265578 TGGCCTTCGGGTCTTATC
64 T-GCCTTCGGGTATTAGC
** ** * *
83265596 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACCACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
83265643 CCATTCAATT
Statistics
Matches: 190, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 6 0.03
80 183 0.96
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
CCTTCGGGTATTAGC
Found at i:83270695 original size:28 final size:28
Alignment explanation
Indices: 83270657--83270763 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
83270647 GAATCATTCG
* *
83270657 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
83270685 ATATCTCGCACACTAAGTACCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
83270713 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
83270741 ATATTTCGTACAATAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
83270764 ATTTGATTGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:83270718 original size:56 final size:56
Alignment explanation
Indices: 83270657--83270763 Score: 160
Period size: 56 Copynumber: 1.9 Consensus size: 56
83270647 GAATCATTCG
* * *
83270657 ATATTTTGCACACTAAGTGTCATTCTCAATATCTCGCACACTAAGTACCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCAATATCTCGCACAATAAGTACCATTCTCA
* * *
83270713 ATATTTCGTACACTAAGTGCCATTCTCAATATTTCGTACAATAAGTACCAT
1 ATATTTCGCACACTAAGTGCCATTCTCAATATCTCGCACAATAAGTACCAT
83270764 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (56 bp):
ATATTTCGCACACTAAGTGCCATTCTCAATATCTCGCACAATAAGTACCATTCTCA
Found at i:83277755 original size:101 final size:99
Alignment explanation
Indices: 83277638--83277822 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 99
83277628 TATATGTAGC
* * * **
83277638 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTACGCGTACCCGATAACTTCGATCATGTGTGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GATCACATGTGT
83277703 AGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
64 AGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
* * *
83277739 TAGGTCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCACATGTGTAG
83277804 TACTAAGTGCAGGCTACTA
66 TACTAAGTGCAGGCTACTA
83277823 TGCGTACCAG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 30 0.39
100 2 0.03
101 44 0.58
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (99 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCACATGTGTAG
TACTAAGTGCAGGCTACTACGTGTATCAGATAAT
Found at i:83277764 original size:50 final size:50
Alignment explanation
Indices: 83277645--83277835 Score: 258
Period size: 50 Copynumber: 3.8 Consensus size: 50
83277635 AGCTAGGTCG
* * * *
83277645 CATGTGTAGTACTAAGTGTAGGCTACTACGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGATCA
** * *
83277696 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGATCA
* *
83277746 CCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGATCA
* *
83277795 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
83277836 GTTTGGCTAC
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
49 41 0.33
50 47 0.38
51 36 0.29
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGATCA
Found at i:83280098 original size:29 final size:27
Alignment explanation
Indices: 83280037--83280119 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 27
83280027 TAATATTCAT
* *
83280037 ATGGCCCATTAGGCCCAAATCACCTGTTT
1 ATGGCCCATTA-GCCCAAATCACAT-TTC
83280066 ATGGCCCATTAGACCCAAATCACATTTAC
1 ATGGCCCATTAG-CCCAAATCACATTT-C
* * *
83280095 ATGGCCCGTTAGGCCTAATCACATT
1 ATGGCCCATTAGCCCAAATCACATT
83280120 CATATTCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
28 14 0.30
29 33 0.70
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (27 bp):
ATGGCCCATTAGCCCAAATCACATTTC
Found at i:83280347 original size:8 final size:8
Alignment explanation
Indices: 83280334--83280378 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
83280324 GTAGCCAAAC
*
83280334 TTTCGGCT
1 TTTCGGCA
83280342 TTTCGGCA
1 TTTCGGCA
*
83280350 TTTCGACA
1 TTTCGGCA
*
83280358 TTTCGGCT
1 TTTCGGCA
83280366 TTTCGGCA
1 TTTCGGCA
83280374 TTTCG
1 TTTCG
83280379 ACTTTTGCCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.09, C:0.24, G:0.22, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:83280366 original size:24 final size:24
Alignment explanation
Indices: 83280334--83280380 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
83280324 GTAGCCAAAC
83280334 TTTCGGCTTTTCGGCATTTCGACA
1 TTTCGGCTTTTCGGCATTTCGACA
83280358 TTTCGGCTTTTCGGCATTTCGAC
1 TTTCGGCTTTTCGGCATTTCGAC
83280381 TTTTGCCGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.43
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCGACA
Found at i:83280383 original size:16 final size:16
Alignment explanation
Indices: 83280334--83280384 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
83280324 GTAGCCAAAC
* *
83280334 TTTCGGCTTTTCGGCA
1 TTTCGGCATTTCGGCT
*
83280350 TTTCGACATTTCGGCT
1 TTTCGGCATTTCGGCT
*
83280366 TTTCGGCATTTCGACT
1 TTTCGGCATTTCGGCT
83280382 TTT
1 TTT
83280385 GCCGACACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.10, C:0.24, G:0.20, T:0.47
Consensus pattern (16 bp):
TTTCGGCATTTCGGCT
Found at i:83287004 original size:78 final size:80
Alignment explanation
Indices: 83286887--83287068 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
83286877 TACTCGTTCA
* * * *
83286887 AAAGCTTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AAAGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
83286950 ATTTAGTAAC-TCGCAC
64 ATTTAGTAACTTAGCAC
* **
83286966 AATGCCTTCGGGA-TTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
83287030 TTAGTCACTTAGCAC
66 TTAGTAACTTAGCAC
83287045 AAAGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGA
83287069 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 47 0.53
79 29 0.33
80 10 0.11
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
AAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TTAGTAACTTAGCAC
Found at i:83287062 original size:40 final size:40
Alignment explanation
Indices: 83286893--83287068 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
83286883 TTCAAAAGCT
* *
83286893 TTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCC
*
83286933 TTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCC
1 TTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCC
*
83286972 TTCGGGA-TTAGCCCGGAATTAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCC
* * *
83287011 TTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACAAA-GCC
1 TTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCC
83287051 TTCGGGACTTAGCCCGGA
1 TTCGGGACTTAGCCCGGA
83287069 CATCATTCGA
Statistics
Matches: 120, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 26 0.22
39 22 0.18
40 59 0.49
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCC
Found at i:83289332 original size:36 final size:36
Alignment explanation
Indices: 83289287--83289358 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
83289277 TCTATTACTA
83289287 TATGGAATCATAGTTTATAATGTCAGGATTCATCAC
1 TATGGAATCATAGTTTATAATGTCAGGATTCATCAC
83289323 TATGGAATCATAGTTTATAATGTCAGGATTCATCAC
1 TATGGAATCATAGTTTATAATGTCAGGATTCATCAC
83289359 ACTATCACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (36 bp):
TATGGAATCATAGTTTATAATGTCAGGATTCATCAC
Found at i:83291393 original size:32 final size:32
Alignment explanation
Indices: 83291354--83291418 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
83291344 TGGATAACAT
*
83291354 AATTAACATTTAAAGCATCAAACAATGAACTA
1 AATTAACATTTAAAGCATCAAAAAATGAACTA
83291386 AATTAACATTTAAAGCATCAAAAAATGAACTA
1 AATTAACATTTAAAGCATCAAAAAATGAACTA
83291418 A
1 A
83291419 CATAAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.55, C:0.14, G:0.06, T:0.25
Consensus pattern (32 bp):
AATTAACATTTAAAGCATCAAAAAATGAACTA
Found at i:83291674 original size:32 final size:34
Alignment explanation
Indices: 83291638--83291712 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
83291628 GGCCCTGTCG
*
83291638 TGGTCTTA-CATTC-ACATGCCATAACCCAGTTA
1 TGGTCTTATCATTCGACATGCCATAACCCAGCTA
* ** *
83291670 TGGTCTTATTATTCGATTTGCCATAGCCCAGCTA
1 TGGTCTTATCATTCGACATGCCATAACCCAGCTA
83291704 TGGTCTTAT
1 TGGTCTTAT
83291713 TCAGTATCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
32 8 0.22
33 4 0.11
34 24 0.67
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (34 bp):
TGGTCTTATCATTCGACATGCCATAACCCAGCTA
Found at i:83296129 original size:43 final size:43
Alignment explanation
Indices: 83295994--83296151 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
83295984 ATATCGTACA
** * * * * *
83295994 ATGCCAACATCCCATACGTGGTCTTACATGCCATC-ACATATGG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCAACATATCG
* * * *
83296037 ATGCCACTATCCCGGACAGGGTCTTACACGAATCAA-ATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCAACATATCG
83296078 ATGCCAATGTCCCAGACATGGTCTTACACGTAAT-AACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCAACATATCG
*
83296121 ATGCCAATGTCCCAGACGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGA
83296152 GAACACATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 29 0.30
42 13 0.13
43 55 0.57
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCAACATATCG
Found at i:83298627 original size:31 final size:31
Alignment explanation
Indices: 83298589--83298650 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
83298579 AATAGGCTAT
*
83298589 TTGTAAAGCCATTTTGCCACCCTATTTTTAC
1 TTGTAAAGCCAATTTGCCACCCTATTTTTAC
83298620 TTGTAAAGCCAATTTGCCACCCTATTTTTAC
1 TTGTAAAGCCAATTTGCCACCCTATTTTTAC
83298651 ATACCTGCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (31 bp):
TTGTAAAGCCAATTTGCCACCCTATTTTTAC
Found at i:83300696 original size:45 final size:45
Alignment explanation
Indices: 83300646--83300816 Score: 183
Period size: 45 Copynumber: 3.8 Consensus size: 45
83300636 GTAACCCGCC
*
83300646 CATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
83300691 CATAAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * *
83300739 C-T--CTCGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
83300781 CGATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
83300817 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 7, Indels: 25
0.77 0.05 0.18
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 1 0.01
44 21 0.20
45 40 0.38
46 10 0.09
47 20 0.19
48 5 0.05
49 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:83300835 original size:45 final size:45
Alignment explanation
Indices: 83300650--83300835 Score: 120
Period size: 45 Copynumber: 4.1 Consensus size: 45
83300640 CCCGCCCATA
* * * *
83300650 AGTGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGC-A-TCA-T
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAATTCACT
* * *
83300694 AAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT-CA-CT
* * * *
83300741 -CTCGAACTCGGACTCAACTCAACGAGTTCGACATTCGC-A-TCGA-T
1 AGT-GAACTCGGACTCAACTCAACGAGTTCG-GATGCCCAATTC-ACT
83300785 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATTC-CT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATTCACT
83300831 AGTGA
1 AGTGA
83300836 CATGTCACTT
Statistics
Matches: 110, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 24 0.22
45 45 0.41
46 11 0.10
47 22 0.20
48 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTCACT
Found at i:83306245 original size:91 final size:92
Alignment explanation
Indices: 83306136--83306306 Score: 290
Period size: 91 Copynumber: 1.9 Consensus size: 92
83306126 CGCCCATAAG
* *
83306136 TGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83306200 ACGAGCTCGGATGCCTAGTTACATCTC
66 ACGAGCTCGGATGCCTAGTTACATCTC
* *
83306227 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83306292 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
83306307 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 49 0.66
92 25 0.34
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (92 bp):
TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTC
Found at i:83306302 original size:46 final size:46
Alignment explanation
Indices: 83306129--83306302 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
83306119 TGTAACCCGC
* * *
83306129 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
83306175 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
83306220 ACATCTCTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
83306266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83306303 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
45 31 0.29
46 68 0.63
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:83306321 original size:46 final size:44
Alignment explanation
Indices: 83306134--83306321 Score: 116
Period size: 46 Copynumber: 4.1 Consensus size: 44
83306124 CCCGCCCATA
* * ** ** **
83306134 AGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCC-T
* *
83306179 AAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAGT-TACATCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-C--CT
* * *
83306226 -CTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-T
83306270 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCT
83306317 AGTGA
1 AGTGA
83306322 CATGTCACTT
Statistics
Matches: 111, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 30 0.27
46 65 0.59
47 2 0.02
48 8 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCT
Found at i:83307940 original size:26 final size:23
Alignment explanation
Indices: 83307842--83307947 Score: 88
Period size: 24 Copynumber: 4.3 Consensus size: 23
83307832 AGCTCCTCCT
* * *
83307842 GAGCTGATGAATAATAAGCTCTATG
1 GAGCTGA-GAACAGTAAGCTCTA-C
*
83307867 GAGTTGA-AACAGTAAGCTCTGAC
1 GAGCTGAGAACAGTAAGCTCT-AC
*
83307890 GAGCTGAGAACAGTAATCTCTTAC
1 GAGCTGAGAACAGTAAGCTC-TAC
*
83307914 GAGCTGATATATCAGTAAGCTCATAC
1 GAGCTGAGA-A-CAGTAAGCTC-TAC
83307940 GAGCTGAG
1 GAGCTGAG
83307948 GTGAGTCCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
23 17 0.26
24 22 0.33
25 8 0.12
26 19 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (23 bp):
GAGCTGAGAACAGTAAGCTCTAC
Found at i:83308116 original size:15 final size:15
Alignment explanation
Indices: 83308096--83308126 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83308086 AGATCATTTA
83308096 TTCAATTACATACAT
1 TTCAATTACATACAT
83308111 TTCAATTACATACAT
1 TTCAATTACATACAT
83308126 T
1 T
83308127 CATTTCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TTCAATTACATACAT
Found at i:83308143 original size:19 final size:19
Alignment explanation
Indices: 83308099--83308143 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83308089 TCATTTATTC
*
83308099 AATTACATACATTTCAATT
1 AATTACATACATTTCAAAT
*
83308118 ACA-TACATTCATTTCAAAT
1 A-ATTACATACATTTCAAAT
83308137 AATTACA
1 AATTACA
83308144 AGCATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.05
19 20 0.91
20 1 0.05
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTACATACATTTCAAAT
Found at i:83312353 original size:40 final size:39
Alignment explanation
Indices: 83312307--83312445 Score: 167
Period size: 39 Copynumber: 3.6 Consensus size: 39
83312297 CCGGTTATAG
* *
83312307 TAACTCGCACAAATACCTTCGGGACTTAACCAGGATTTAT
1 TAACTCGCACAAATGCCTTCGGGACTTAACCAGGA-TTAC
* *
83312347 TGACTCGCACAAATGCCTTCGGGACTTAACCCA-GATTAG
1 TAACTCGCACAAATGCCTTCGGGACTTAA-CCAGGATTAC
* * *
83312386 TAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAC
1 TAACTCGCACAAATGCCTTCGGGACTTAACCAGG-ATTAC
83312425 TAACTC-CACAAATGCCTTCGG
1 TAACTCGCACAAATGCCTTCGG
83312446 ATCTTAGTCC
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 19 0.22
39 34 0.39
40 29 0.33
41 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (39 bp):
TAACTCGCACAAATGCCTTCGGGACTTAACCAGGATTAC
Found at i:83312387 original size:79 final size:78
Alignment explanation
Indices: 83312276--83312445 Score: 207
Period size: 79 Copynumber: 2.2 Consensus size: 78
83312266 GCTACTCGTT
* * * *
83312276 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAACCAGG
1 CAAATGCCTTCGGGACATAACCCAGATATAGTAACTCGCACAAATACCTTCGGG-CTTAACCAGG
* * *
83312341 ATTTATTGACTCGCA
65 AATTACTAACTC-CA
* * * * *
83312356 CAAATGCCTTCGGGACTTAACCCAGAT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCAGATATAGTAACTCGCACAAATACCTTCGGGCTTAACCAGGA
83312420 ATTACTAACTCCA
66 ATTACTAACTCCA
83312433 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83312446 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
77 15 0.19
78 17 0.22
79 24 0.31
80 22 0.28
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCAGATATAGTAACTCGCACAAATACCTTCGGGCTTAACCAGGA
ATTACTAACTCCA
Found at i:83312403 original size:39 final size:39
Alignment explanation
Indices: 83312276--83312491 Score: 181
Period size: 40 Copynumber: 5.5 Consensus size: 39
83312266 GCTACTCGTT
* * * * *
83312276 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCAGAT-TAGTAACTCGCA
* * *
83312316 CAAATACCTTCGGGACTTAA-CCAGGATTTATTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCA-GA-TTAGTAACTCGCA
83312356 CAAATGCCTTCGGGACTTAACCCAGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCAGATTAGTAACTCGCA
* * * *
83312395 CCAATGCCTTCGGG-CTTAGCCCGGAATTACTAACTC-CA
1 CAAATGCCTTCGGGACTTAACCCAG-ATTAGTAACTCGCA
** * * *
83312433 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCAGAT-TAGTAAC-TCGCA
83312474 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
83312492 GCCCGGACAT
Statistics
Matches: 146, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
37 2 0.01
38 22 0.15
39 50 0.34
40 59 0.40
41 13 0.09
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCAGATTAGTAACTCGCA
Found at i:83320469 original size:40 final size:40
Alignment explanation
Indices: 83320432--83320656 Score: 206
Period size: 40 Copynumber: 5.7 Consensus size: 40
83320422 GCTACTCGTT
* * *
83320432 CAAATGCCTTCGGGACGTAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
83320472 CAAATGCCTTTGGGACTTAACCCGGATTTATTGACTCGCA
1 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
* *
83320512 CAAATGCCTTTGGGACTTAACCCGGACTTAGTAACTTGCA
1 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * * *
83320552 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCCCA
1 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
83320591 CAAATGCC-TTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTTGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
83320632 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTTGGGACTTAACCCGGA
83320657 CATCATTCGA
Statistics
Matches: 151, Mismatches: 29, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
38 3 0.02
39 27 0.18
40 108 0.72
41 13 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:83320546 original size:80 final size:80
Alignment explanation
Indices: 83320432--83320656 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 80
83320422 GCTACTCGTT
* * * * * *
83320432 CAAATGCCTTCGGGACGTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGG
1 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
83320497 ATTTATTGACTCGCA
66 AATTAGTAACTCCCA
* * * *
83320512 CAAATGCCTTTGGGACTTAACCCGGACT-TAGTAACTTGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTTGGGACTTAGCCCGGA-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
83320575 GAATTAGTAACTCCCA
65 GAATTAGTAACTCCCA
* * *
83320591 CAAATGCC-TTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTTGGGA-CTTAGCCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCC
83320654 GGA
64 GGA
83320657 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 6 0.05
79 51 0.43
80 62 0.52
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCCCA
Found at i:83320616 original size:79 final size:80
Alignment explanation
Indices: 83320432--83320653 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 80
83320422 GCTACTCGTT
* * * * * * * *
83320432 CAAATGCC-TTCGGGACGTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCG
1 CAAATGCCTTTC-GGACTTAACCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCA
* * * *
83320496 GATTTATTGACTCGCA
65 GAATTAGTAACTCCCA
*
83320512 CAAATGCCTTTGGGACTTAACCCGGACT-TAGTAACTTGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTTCGGACTTAACCCGGA-TATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCA
83320575 GAATTAGTAACTCCCA
65 GAATTAGTAACTCCCA
** * *
83320591 CAAATGCC-TTCGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTTCGGA-CTTAACCCGGATATAGTAACTT-GCACCAATGCCTTCGGGACTTAGCCC
83320654 GGACATCATT
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 6 0.05
79 56 0.47
80 53 0.45
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTTCGGACTTAACCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCAG
AATTAGTAACTCCCA
Found at i:83320640 original size:119 final size:120
Alignment explanation
Indices: 83320434--83320657 Score: 276
Period size: 119 Copynumber: 1.9 Consensus size: 120
83320424 TACTCGTTCA
** * *
83320434 AATGCCTTCGGGACGTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACGTAGCCCGAATATAGTAACTCCCACAAATGCCTTTCGGACTTAACCCGGAT
* * * * *
83320499 TTATTGACTCGCACAAATGCCTTTGGGACTTAACCCGGACTTAGTAACTTGCACC
66 ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTTGCACC
* **
83320554 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCCCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGGGACGTAGCCC-GAATATAGTAACTCCCACAAATGCCTTTCGGA-CTTAACCCGG
*
83320616 ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAC
64 ATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAACCCGGAC
83320658 ATCATTCGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
118 5 0.06
119 61 0.69
120 22 0.25
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACGTAGCCCGAATATAGTAACTCCCACAAATGCCTTTCGGACTTAACCCGGAT
ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTTGCACC
Found at i:83325895 original size:48 final size:48
Alignment explanation
Indices: 83325766--83325896 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
83325756 TTAATGAGAT
* * * *
83325766 CCAGTGTAAGACCATGTCTAGGACATGGCATTGACGTTGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG
*
83325814 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG
** *
83325862 GTAGTGTAAGACCATATCTGGGACATGGCATCGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
83325897 ACCGATATGA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG
Found at i:83325904 original size:48 final size:47
Alignment explanation
Indices: 83325768--83325937 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 47
83325758 AATGAGATCC
* * * * * *
83325768 AGTGTAAGACCATGTCTAGGACATGGCATTGACGTTGATATGTGTGCC
1 AGTGTAAGACCATATCTGGGACATGGCATCGGC-ATGATATGTGTGCT
* * *
83325816 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGGT
1 AGTGTAAGACCATATCTGGGACATGGCATCGG-CATGATATGTGTGCT
* * *
83325864 AGTGTAAGACCATATCTGGGACATGGCATCGGCACCGATATGAG-ACTT
1 AGTGTAAGACCATATCTGGGACATGGCATCGGCA-TGATATGTGTGC-T
* * *
83325912 TGTATAAGACCATATCTGGGATATGG
1 AGTGTAAGACCATATCTGGGACATGG
83325938 TGTCGACATG
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 102 0.99
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTAAGACCATATCTGGGACATGGCATCGGCATGATATGTGTGCT
Found at i:83326500 original size:58 final size:58
Alignment explanation
Indices: 83326410--83326525 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
83326400 CAGCCACTTA
83326410 TATTCCTTGCAAGTAAGTGATTTAGATGGCCTTTCTTGATGATTTTTGCATTTTTCGG
1 TATTCCTTGCAAGTAAGTGATTTAGATGGCCTTTCTTGATGATTTTTGCATTTTTCGG
83326468 TATTCCTTGCAAGTAAGTGATTTAGATGGCCTTTCTTGATGATTTTTGCATTTTTCGG
1 TATTCCTTGCAAGTAAGTGATTTAGATGGCCTTTCTTGATGATTTTTGCATTTTTCGG
83326526 ACCCTTGTAG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.47
Consensus pattern (58 bp):
TATTCCTTGCAAGTAAGTGATTTAGATGGCCTTTCTTGATGATTTTTGCATTTTTCGG
Found at i:83327485 original size:49 final size:49
Alignment explanation
Indices: 83327347--83327485 Score: 154
Period size: 49 Copynumber: 2.8 Consensus size: 49
83327337 TGATGTGTGT
** **
83327347 TAGTGTAAGACCTGTTTGGGACATGGCATCGACATAGATAAATGGGAGC
1 TAGTGTAAGACCTGTTTGGGACATGGCATCGACATAGATGTATGAAAGC
* * * * *
83327396 TGGTGTAAGACTTGTTTGGGACATGGCATCGGCCTCGATGTATGAAAG-
1 TAGTGTAAGACCTGTTTGGGACATGGCATCGACATAGATGTATGAAAGC
* * *
83327444 TCAGTGTAAGACCTATTTGGGACATGGCGTCGACTTAGATGT
1 T-AGTGTAAGACCTGTTTGGGACATGGCATCGACATAGATGT
83327486 GAGATTCAGT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 72 0.99
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (49 bp):
TAGTGTAAGACCTGTTTGGGACATGGCATCGACATAGATGTATGAAAGC
Done.