Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 275 of 425
Found at i:84793108 original size:35 final size:35
Alignment explanation
Indices: 84792973--84793139 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
84792963 GGCAAAGTGT
* **
84792973 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
84793008 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
84793043 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
84793083 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
84793119 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
84793140 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:84793131 original size:36 final size:35
Alignment explanation
Indices: 84793069--84793139 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
84793059 ATTATCAAAT
* *
84793069 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
84793104 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
84793140 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:84794615 original size:37 final size:37
Alignment explanation
Indices: 84794562--84794652 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
84794552 TATAAAAGAA
84794562 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84794599 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84794636 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
84794653 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:84794803 original size:49 final size:49
Alignment explanation
Indices: 84794748--84795011 Score: 438
Period size: 49 Copynumber: 5.4 Consensus size: 49
84794738 TTTTATTTCA
* *
84794748 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
*
84794797 GCCATTAGGCCTCATCACATATACATACACTTCCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
*
84794846 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
*
84794895 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
* * *
84794944 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
* *
84794993 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
84795012 CATATATGTA
Statistics
Matches: 205, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 205 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
Found at i:84794888 original size:27 final size:27
Alignment explanation
Indices: 84794857--84794941 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
84794847 CCATTAGGCC
84794857 TCATCACATATACATCCACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
** *** *
84794884 TCATCAC--AT-CGGCCA-TTAGGC-C
1 TCATCACATATACATCCACTTTCACAT
84794906 TCATCACATATACATCCACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
84794933 TCATCACAT
1 TCATCACAT
84794942 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
22 7 0.17
23 3 0.07
24 6 0.15
25 6 0.15
26 3 0.07
27 16 0.39
ACGTcount: A:0.31, C:0.34, G:0.05, T:0.31
Consensus pattern (27 bp):
TCATCACATATACATCCACTTTCACAT
Found at i:84803845 original size:40 final size:40
Alignment explanation
Indices: 84803760--84803910 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
84803750 AATTGAATGA
* * * **
84803760 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
84803800 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
84803841 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
84803880 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
84803911 ACTGGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:84807095 original size:25 final size:25
Alignment explanation
Indices: 84807066--84807113 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84807056 TTATAATATG
* * *
84807066 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84807091 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84807114 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84807182 original size:20 final size:20
Alignment explanation
Indices: 84807157--84807215 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
84807147 TAAATATGGT
84807157 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
84807177 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
84807197 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
84807216 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:84807197 original size:11 final size:11
Alignment explanation
Indices: 84807161--84807215 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
84807151 TATGGTATGT
84807161 ATGATATGCAC
1 ATGATATGCAC
* *
84807172 ATGAAATG--T
1 ATGATATGCAC
84807181 ATGATATGCAC
1 ATGATATGCAC
*
84807192 ATGATATG--T
1 ATGATATGCAC
84807201 ATGATATGCAC
1 ATGATATGCAC
84807212 ATGA
1 ATGA
84807216 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:84807296 original size:23 final size:24
Alignment explanation
Indices: 84807266--84807407 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
84807256 GAGGAAGTGA
84807266 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
84807289 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
84807313 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
84807336 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
84807360 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
84807384 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84807408 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 36 0.33
24 63 0.57
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:84807340 original size:47 final size:47
Alignment explanation
Indices: 84807266--84807407 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
84807256 GAGGAAGTGA
84807266 AAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
84807313 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
84807360 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
84807408 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 56 0.64
48 20 0.23
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:84807634 original size:31 final size:31
Alignment explanation
Indices: 84807599--84807662 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
84807589 CGTTTACAGT
84807599 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
84807630 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
84807661 AA
1 AA
84807663 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:84815199 original size:25 final size:25
Alignment explanation
Indices: 84815170--84815217 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
84815160 TTATAATATG
* *
84815170 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84815195 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84815218 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84815351 original size:24 final size:24
Alignment explanation
Indices: 84815324--84815465 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
84815314 GAGGAAGTGA
84815324 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
84815348 AAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
84815372 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
84815395 AAAAGGG-TTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
84815418 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
84815442 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84815466 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
22 15 0.14
23 13 0.12
24 68 0.64
25 11 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:84815433 original size:46 final size:46
Alignment explanation
Indices: 84815324--84815465 Score: 185
Period size: 46 Copynumber: 3.0 Consensus size: 46
84815314 GAGGAAGTGA
*
84815324 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGG-TTATGCCCCAGTTATC
*
84815372 AAAAGGGCTTATGCCCCAGTTATAAAAGGGTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGTTATGCCCCAGTTATC
* * * *
84815418 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGTTATGCC-CCAGTTAT
84815466 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
46 34 0.40
47 13 0.15
48 30 0.35
49 8 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGTTATGCCCCAGTTATC
Found at i:84815446 original size:70 final size:72
Alignment explanation
Indices: 84815324--84815466 Score: 202
Period size: 70 Copynumber: 2.0 Consensus size: 72
84815314 GAGGAAGTGA
*
84815324 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGC-TAGGCCT
84815387 CCAGTTAT
65 CCAGTTAT
** * * *
84815395 AAAAGGG-TTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGCTAGGCCTC
84815459 CAGTTAT
66 CAGTTAT
84815466 A
1 A
84815467 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
70 45 0.70
71 19 0.30
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:84815692 original size:31 final size:31
Alignment explanation
Indices: 84815657--84815720 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
84815647 CGTTTACAGT
84815657 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
84815688 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
84815719 AA
1 AA
84815721 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:84818842 original size:85 final size:86
Alignment explanation
Indices: 84818678--84818843 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 86
84818668 CAATATGTGT
* **
84818678 TTTCGTGTAAAACCACATCTGGGATGTTGGCATCGACTTATGATTTACGTGTAAGGGCACGTCTG
1 TTTCGTGTAAAACCACATCTGGGATGTTGGCATCGACTTATGATTTACATGTAAGACCACGTCTG
*
84818743 AGACGTTGGTATTGTATTTGA
66 AGACGTTGGCATTGTATTTGA
* * *
84818764 TTTCGTGTAAGACC-CTTTCTGGGATAG-TGGCATCGA-TATTTG-TTTACATGTAAGACCACGT
1 TTTCGTGTAAAACCAC-ATCTGGGAT-GTTGGCATCGACT-TATGATTTACATGTAAGACCACGT
* *
84818825 CTGGGATGTTGGCATTGTA
63 CTGAGACGTTGGCATTGTA
84818844 CGAGCTTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
85 34 0.50
86 33 0.49
87 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.36
Consensus pattern (86 bp):
TTTCGTGTAAAACCACATCTGGGATGTTGGCATCGACTTATGATTTACATGTAAGACCACGTCTG
AGACGTTGGCATTGTATTTGA
Found at i:84824242 original size:27 final size:29
Alignment explanation
Indices: 84824168--84824243 Score: 104
Period size: 28 Copynumber: 2.7 Consensus size: 29
84824158 AACATGTCAG
*
84824168 GAAAGAATAAGCCTTTGTGG-TGAACTAC
1 GAAAGAATAAGCCTTTATGGCTGAACTAC
*
84824196 GAAAGAATAAGCCTTTATGGCT-AACTAT
1 GAAAGAATAAGCCTTTATGGCTGAACTAC
*
84824224 GAAAG-ATTAGCCTTTATGGC
1 GAAAGAATAAGCCTTTATGGC
84824244 GGACTCCATA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 14 0.32
28 29 0.66
29 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (29 bp):
GAAAGAATAAGCCTTTATGGCTGAACTAC
Found at i:84827305 original size:21 final size:22
Alignment explanation
Indices: 84827273--84827318 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
84827263 AAGCAGAGTC
84827273 ACATGCCCGTGTGGACACAGGG
1 ACATGCCCGTGTGGACACAGGG
84827295 ACATG-CCGTGTGGACACAGGG
1 ACATGCCCGTGTGGACACAGGG
84827316 ACA
1 ACA
84827319 CACCCATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.13
Consensus pattern (22 bp):
ACATGCCCGTGTGGACACAGGG
Found at i:84829711 original size:29 final size:29
Alignment explanation
Indices: 84829654--84829747 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
84829644 AATTTAAGCC
* *** *
84829654 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACACAGTGCCGTATTTTTCCAGCT
*
84829683 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACACAGTGCCGTATTTTTCCAGCT
* * * *
84829712 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACACAGTGCCGTATTTTTCCAGCT
84829741 CGCACAC
1 CGCACAC
84829748 TTAGTGCCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACACAGTGCCGTATTTTTCCAGCT
Found at i:84829752 original size:29 final size:29
Alignment explanation
Indices: 84829683--84829755 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
84829673 CCTTCGAGCT
** *
84829683 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCGTATTTTTCCAGCA
* *
84829712 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACATAGTGCCGTATTTTTCCAGCA
*
84829741 CGCACACTTAGTGCC
1 CGCACACATAGTGCC
84829756 AATCTCGTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.29
Consensus pattern (29 bp):
CGCACACATAGTGCCGTATTTTTCCAGCA
Found at i:84836337 original size:21 final size:21
Alignment explanation
Indices: 84836312--84836352 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
84836302 AAAGAATAAG
**
84836312 AAATAAAACTATCTTAAAATA
1 AAATAAAACTAAATTAAAATA
*
84836333 AAATAGAACTAAATTAAAAT
1 AAATAAAACTAAATTAAAAT
84836353 CCTAAAACAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATAAAACTAAATTAAAATA
Found at i:84844585 original size:42 final size:41
Alignment explanation
Indices: 84844397--84844609 Score: 165
Period size: 42 Copynumber: 5.0 Consensus size: 41
84844387 TTCCGATATG
* * * * *
84844397 TGATTTTGTGTAAGATCACGTATGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA
*
84844438 TGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCAAATA
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATTGGCATC-GATA
* ** * * * * * *
84844483 TGATTTCGTGTAAAACCACATGTAGGACGTTGTCATTGATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA
* *
84844524 TGAGATTTACATGTGAGACCATGTCTGGGACATTGGCATCGTATA
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG-ATA
* * * *
84844569 TGATTTTGTGTAAGACCCTGTCTGGGATAGTGGCATCGATA
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA
84844610 AACCACGTCT
Statistics
Matches: 131, Mismatches: 33, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
41 7 0.05
42 49 0.37
43 20 0.15
44 49 0.37
45 6 0.05
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA
Found at i:84851435 original size:14 final size:15
Alignment explanation
Indices: 84851416--84851445 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84851406 GTTTATTATA
84851416 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
84851430 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
84851445 T
1 T
84851446 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:84854760 original size:25 final size:25
Alignment explanation
Indices: 84854726--84854777 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
84854716 AGGTTCGAGA
84854726 TGATTGGTTGATTGTGGTAATCTGT
1 TGATTGGTTGATTGTGGTAATCTGT
84854751 TGATTGGTTGATTGTGGTAATCTGT
1 TGATTGGTTGATTGTGGTAATCTGT
84854776 TG
1 TG
84854778 TAATGGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.04, G:0.33, T:0.48
Consensus pattern (25 bp):
TGATTGGTTGATTGTGGTAATCTGT
Found at i:84860832 original size:39 final size:39
Alignment explanation
Indices: 84860718--84860888 Score: 211
Period size: 39 Copynumber: 4.3 Consensus size: 39
84860708 ACGACTAGCT
*
84860718 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* * *
84860758 CGAATGCCTTCGAGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAACCCGGATTTAGTAACTCGCA
*
84860798 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
84860837 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCACA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
84860876 CGAACGCCTTCGG
1 CAAATGCCTTCGG
84860889 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
39 73 0.62
40 40 0.34
41 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:84865536 original size:27 final size:27
Alignment explanation
Indices: 84865495--84865607 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
84865485 TGGGCCATGT
* *
84865495 ATGACCGA-ACTACCCCTATAGGGTAAA
1 ATGACCGAGA-TACCCCCATAAGGTAAA
*
84865522 ATAACCGAGATACCCCCATAAGGTAAA
1 ATGACCGAGATACCCCCATAAGGTAAA
* *
84865549 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAGATACCCCCATAAGGTAAA
* * * *
84865576 ATGATCAAGGTACCCCTATAAGGTAAA
1 ATGACCGAGATACCCCCATAAGGTAAA
84865603 ATGAC
1 ATGAC
84865608 TGTAATACAC
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 71 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (27 bp):
ATGACCGAGATACCCCCATAAGGTAAA
Found at i:84865615 original size:54 final size:53
Alignment explanation
Indices: 84865495--84865664 Score: 171
Period size: 54 Copynumber: 3.2 Consensus size: 53
84865485 TGGGCCATGT
* * * * *
84865495 ATGACCGAACTACCCCTATAGGGTAAAATAACCGAGATACCCCCATAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGA-CAAGATACCCCTATAAGGTAAA
* * *
84865549 ATGACCGAAATACCCCCATAGGGTAAAATGATCAAGGTACCCCTATAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGA-CAAGATACCCCTATAAGGTAAA
* * * * * *
84865603 ATGACTGTAATACACTTGTACGGTAAAATGACTATA-ATATCCCTATAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGAC-A-AGATACCCCTATAAGGTAAA
84865657 ATGACTGA
1 ATGACTGA
84865665 CTTGCCCTAT
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 95 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.22
Consensus pattern (53 bp):
ATGACTGAAATACCCCTATAGGGTAAAATGACAAGATACCCCTATAAGGTAAA
Found at i:84865627 original size:27 final size:27
Alignment explanation
Indices: 84865508--84865663 Score: 104
Period size: 27 Copynumber: 5.8 Consensus size: 27
84865498 ACCGAACTAC
* * * *
84865508 CCCTATAGGGTAAAATAACCG-AGATAC
1 CCCTATAAGGTAAAATGACTGTA-ATAT
* * * *
84865535 CCCCATAAGGTAAAATGACCGAAATAC
1 CCCTATAAGGTAAAATGACTGTAATAT
* * * *
84865562 CCCCATAGGGTAAAATGA-T-CAAGGTAC
1 CCCTATAAGGTAAAATGACTGTAA--TAT
84865589 CCCTATAAGGTAAAATGACTGTAATA-
1 CCCTATAAGGTAAAATGACTGTAATAT
* * * *
84865615 CACTTGTACGGTAAAATGACTATAATAT
1 C-CCTATAAGGTAAAATGACTGTAATAT
84865643 CCCTATAAGGTAAAATGACTG
1 CCCTATAAGGTAAAATGACTG
84865664 ACTTGCCCTA
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 97 0.92
28 3 0.03
29 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
CCCTATAAGGTAAAATGACTGTAATAT
Found at i:84873370 original size:29 final size:29
Alignment explanation
Indices: 84873331--84873390 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
84873321 AATGGTCTAA
84873331 TTACCATATAAGGACCTCAAATTTAAAAT
1 TTACCATATAAGGACCTCAAATTTAAAAT
*
84873360 TTACCATATAAGGACCTCCAATTTAAAAT
1 TTACCATATAAGGACCTCAAATTTAAAAT
84873389 TT
1 TT
84873391 CATAACAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (29 bp):
TTACCATATAAGGACCTCAAATTTAAAAT
Found at i:84875882 original size:28 final size:29
Alignment explanation
Indices: 84875850--84875947 Score: 123
Period size: 28 Copynumber: 3.5 Consensus size: 29
84875840 ATAATAAGCC
*
84875850 CGCACACTTAGTGCTTA-ATAGTCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
84875878 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* **
84875906 CGCACACTTAGTGC-TATACAATTTGAAC-
1 CGCACACTTAGTGCTTATATAA-TCAAACT
84875934 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84875948 CAATTCATGA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 2 0.03
28 58 0.91
29 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:84887157 original size:44 final size:44
Alignment explanation
Indices: 84887109--84887311 Score: 161
Period size: 44 Copynumber: 4.7 Consensus size: 44
84887099 ATGTGATTTT
* * *
84887109 GTGTGAGATCACGTATGGGACATTGGCATCGATTTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATTTAC
* * **
84887153 GTGTGAGACCATGTCTGGGACATTGGCATC-AAAT-ATGATTT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGA-GATTTAC
* * * * * *
84887195 GTGTAAAACCACTTGTAGGACGTTGTCATCGATTTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATTTAC
* * **
84887239 GTGTAAGACCATGTCTGGGACATTGCCATC-AAAT-ATGATTT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGA-GATTTAC
84887281 GTGTAAGACC-CTGTCTGGGAC-TGTGGCATCG
1 GTGTAAGACCAC-GTCTGGGACAT-TGGCATCG
84887312 GTAGACCACG
Statistics
Matches: 125, Mismatches: 26, Indels: 17
0.74 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 51 0.41
43 21 0.17
44 52 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (44 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATTTAC
Found at i:84887231 original size:86 final size:86
Alignment explanation
Indices: 84887126--84887286 Score: 286
Period size: 86 Copynumber: 1.9 Consensus size: 86
84887116 ATCACGTATG
* *
84887126 GGACATTGGCATCGATTTGAGATTTACGTGTGAGACCATGTCTGGGACATTGGCATCAAATATGA
1 GGACATTGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATATGA
84887191 TTTCGTGTAAAACCACTTGTA
66 TTTCGTGTAAAACCACTTGTA
* *
84887212 GGACGTTGTCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATATGA
1 GGACATTGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATATGA
84887277 TTTCGTGTAA
66 TTTCGTGTAA
84887287 GACCCTGTCT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (86 bp):
GGACATTGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATATGA
TTTCGTGTAAAACCACTTGTA
Found at i:84887286 original size:42 final size:43
Alignment explanation
Indices: 84887146--84887301 Score: 167
Period size: 42 Copynumber: 3.7 Consensus size: 43
84887136 ATCGATTTGA
* *
84887146 GATTTACGTGTGAGACCATGTCTGGGACATTGGCATCAAATAT
1 GATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATAT
* * * * * * *
84887189 GATTT-CGTGTAAAACCACT-TGTAGGACGTTGTCATC-GATTT
1 GATTTACGTGTAAGACCA-TGTCTGGGACATTGCCATCAAATAT
84887230 GAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATAT
1 --GATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATAT
*
84887275 GATTT-CGTGTAAGACCCTGTCTGGGAC
1 GATTTACGTGTAAGACCATGTCTGGGAC
84887302 TGTGGCATCG
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.03
42 44 0.48
43 17 0.19
44 24 0.26
45 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATAT
Found at i:84887311 original size:86 final size:86
Alignment explanation
Indices: 84887124--84887311 Score: 274
Period size: 86 Copynumber: 2.2 Consensus size: 86
84887114 AGATCACGTA
* *
84887124 TGGGACAT-TGGCATCGATTTGAGATTTACGTGTGAGACCATGTCTGGGACATTGGCATCAAATA
1 TGGGAC-TGTGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATA
*
84887188 TGATTTCGTGTAAAACCACTTG
65 TGATTTCGTGTAAAACCACTTC
* *
84887210 TAGGAC-GTTGTCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATA
1 TGGGACTG-TGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATA
*
84887274 TGATTTCGTGTAAGACC-CTGTC
65 TGATTTCGTGTAAAACCACT-TC
84887296 TGGGACTGTGGCATCG
1 TGGGACTGTGGCATCG
84887312 GTAGACCACG
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 87 0.97
87 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (86 bp):
TGGGACTGTGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGCCATCAAATAT
GATTTCGTGTAAAACCACTTC
Found at i:84893869 original size:27 final size:28
Alignment explanation
Indices: 84893813--84893882 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
84893803 AAACTTGTAC
84893813 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
84893841 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
84893868 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
84893883 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:84893893 original size:27 final size:27
Alignment explanation
Indices: 84893813--84893894 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
84893803 AAACTTGTAC
* *
84893813 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
84893841 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
84893868 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
84893895 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:84897442 original size:14 final size:15
Alignment explanation
Indices: 84897423--84897452 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84897413 GTTTATTATA
84897423 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
84897437 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
84897452 T
1 T
84897453 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:84903685 original size:40 final size:39
Alignment explanation
Indices: 84903520--84903703 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
84903510 AAATTGAATG
* * *
84903520 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
84903560 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
84903600 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
84903640 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
84903679 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
84903704 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:84903728 original size:80 final size:81
Alignment explanation
Indices: 84903560--84903748 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
84903550 GCTGGAAATT
* * * *
84903560 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
84903625 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
84903641 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
84903704 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
84903720 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
84903749 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:84911801 original size:40 final size:39
Alignment explanation
Indices: 84911636--84911819 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
84911626 AAATTGAATG
* * *
84911636 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
84911676 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
84911716 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
84911756 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
84911795 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
84911820 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:84911844 original size:80 final size:81
Alignment explanation
Indices: 84911676--84911864 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
84911666 GCTGGAAATT
* * * *
84911676 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
84911741 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
84911757 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
84911820 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
84911836 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
84911865 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:84918807 original size:2 final size:2
Alignment explanation
Indices: 84918795--84918834 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
84918785 ATCAATATTA
*
84918795 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84918835 TTCACAATGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84921522 original size:99 final size:97
Alignment explanation
Indices: 84921394--84921631 Score: 255
Period size: 99 Copynumber: 2.4 Consensus size: 97
84921384 GGAAGAAATG
* * * *
84921394 CTCCCAAAAGATAGAGTTCATACAACTCAATCAGTTTACTCAGAGCGCAAGGTTAACTCAATTAA
1 CTCCCAAAAGATGGAGTT-ATACAGCTCAATC-GTTTACTCAGAACGCAAGGCTAACTCAATTAA
* *
84921459 AGCAAATCAAT-TTAAT-AGTCATATTGGAAGTAGC
64 AGCAAAT-AATCTCAATGA-TCATATTAGAAGTAGC
* * * * * * *
84921493 CTCCCAAAAGATGGAGTATATCCAGCTCAACTGGTTTACTCGGAACGTAGGGCTAACTTAGTTAA
1 CTCCCAAAAGATGGAGT-TATACAGCTCAA-TCGTTTACTCAGAACGCAAGGCTAACTCAATTAA
*
84921558 AGCTAATAATCTCAATGATCATATTAGAAGTAGC
64 AGCAAATAATCTCAATGATCATATTAGAAGTAGC
*
84921592 CTCCCAAAAGATGGAGTTTATACAGCTAAATCGATTTACT
1 CTCCCAAAAGATGGAG-TTATACAGCTCAATCG-TTTACT
84921632 TGGATTGTAG
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
98 5 0.04
99 107 0.92
100 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (97 bp):
CTCCCAAAAGATGGAGTTATACAGCTCAATCGTTTACTCAGAACGCAAGGCTAACTCAATTAAAG
CAAATAATCTCAATGATCATATTAGAAGTAGC
Found at i:84921671 original size:99 final size:99
Alignment explanation
Indices: 84921477--84921694 Score: 233
Period size: 99 Copynumber: 2.2 Consensus size: 99
84921467 AATTTAATAG
* * *
84921477 TCATATTGGAAGTAGCCTCCCAAAAGATGGAGTATATCCAGCTCAACTGGTTTACTCGGAACGTA
1 TCATATTGGAAGTAGCCTCCCAAAAGATGGAGTATATACAGCTAAACTGATTTACTCGGAACGTA
* * * * * *
84921542 GGGCTAACTTAGTTAAAGCTAATAATCTCAATGA
66 GGGCTAACTCACTTAAAGCAAAAAAACTCAACGA
* * * **
84921576 TCATATTAGAAGTAGCCTCCCAAAAGATGGAGTTTATACAGCTAAA-TCGATTTACTTGGATTGT
1 TCATATTGGAAGTAGCCTCCCAAAAGATGGAGTATATACAGCTAAACT-GATTTACTCGGAACGT
* * * *
84921640 AGGGTTAACTCACTTCATG-AAAAAACACTCAACGG
65 AGGGCTAACTCACTTAAAGCAAAAAA-ACTCAACGA
*
84921675 TCATGTTGGAAGTAGCCTCC
1 TCATATTGGAAGTAGCCTCC
84921695 AAGATGAGCT
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
98 5 0.05
99 92 0.95
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (99 bp):
TCATATTGGAAGTAGCCTCCCAAAAGATGGAGTATATACAGCTAAACTGATTTACTCGGAACGTA
GGGCTAACTCACTTAAAGCAAAAAAACTCAACGA
Found at i:84925231 original size:42 final size:42
Alignment explanation
Indices: 84925172--84925293 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
84925162 TAGGGTTAGT
*
84925172 TGAGATTACATGTAAGACCGTATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
84925214 TGAGATTTCATGTAAGACCATAGCTGAGCTATTGTCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
** * *
84925257 TGAGATCCCATGTAAGATCACATCTGGGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
84925294 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:84929167 original size:14 final size:14
Alignment explanation
Indices: 84929148--84929178 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
84929138 TAGCGAAGAA
84929148 ATTGAATGAATTTG
1 ATTGAATGAATTTG
84929162 ATTGAATGAATTTG
1 ATTGAATGAATTTG
84929176 ATT
1 ATT
84929179 TTACAAGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.45
Consensus pattern (14 bp):
ATTGAATGAATTTG
Found at i:84929411 original size:17 final size:17
Alignment explanation
Indices: 84929389--84929421 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
84929379 GCTAATAAGG
*
84929389 TAAGTCTGTGTGACTAT
1 TAAGTCCGTGTGACTAT
84929406 TAAGTCCGTGTGACTA
1 TAAGTCCGTGTGACTA
84929422 AATAAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (17 bp):
TAAGTCCGTGTGACTAT
Found at i:84929848 original size:47 final size:46
Alignment explanation
Indices: 84929780--84929903 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
84929770 TGTGTACTAG
* *
84929780 TGTAAGACATGTCTGGGACATGTATCGGCCACAT-TATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCA-ATAGATGAGAGCCAA
* * *
84929826 TGTAAGACCATGTCTGGGACATGGCATTGG-CAATGAGATGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCAAT-AGATGAGAGCCAA
84929874 TGTAAGACATGTCTGGGACATGCATCGGCC
1 TGTAAGACATGTCTGGGACATGCATCGGCC
84929904 TCGAGATATA
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
46 15 0.22
47 31 0.46
48 21 0.31
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCAATAGATGAGAGCCAA
Found at i:84929926 original size:48 final size:47
Alignment explanation
Indices: 84929780--84929929 Score: 146
Period size: 48 Copynumber: 3.2 Consensus size: 47
84929770 TGTGTACTAG
* * * *
84929780 TGTAAGACATGTCTGGGACATGTATCGGCCAC-A-TTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-AGAGCTAA
* * * *
84929826 TGTAAGACCATGTCTGGGACATGGCATTGGCAAT-GAGAT-GAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATATAGAGCTAA
*
84929874 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-GAGCTAA
84929922 TGTAAGAC
1 TGTAAGAC
84929930 CTGTGACATG
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
45 1 0.01
46 19 0.23
47 29 0.35
48 32 0.39
49 1 0.01
50 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAGAGCTAA
Found at i:84930015 original size:49 final size:48
Alignment explanation
Indices: 84929959--84930131 Score: 127
Period size: 49 Copynumber: 3.6 Consensus size: 48
84929949 TGATGTGTGT
*
84929959 CAGTGTAAGACATGTCTGGGACATGGCATCAACACTGATAGATGAGAGC
1 CAGTGTAAGACATGTCTGGGACATGGCATCAAC-CTGATAGATGAAAGC
* * * * * * * *
84930008 CAGTGTAAGACCTATCTGGGGCACGACAT-AGGCCTCGATATATGAAAGT
1 CAGTGTAAGACATGTCTGGGACATGGCATCA-ACCT-GATAGATGAAAGC
* * * * * * **
84930057 CATTGTAAGACCTGTCTAGGACATGGTATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACATGTCTGGGACATGGCATCAAC-CTGATAGATGAAAGC
84930104 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGA-CATGTCTGGGACATGGC
84930132 GTCGGTATCT
Statistics
Matches: 92, Mismatches: 27, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
47 13 0.14
48 17 0.18
49 61 0.66
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCAACCTGATAGATGAAAGC
Found at i:84941234 original size:14 final size:15
Alignment explanation
Indices: 84941202--84941248 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
84941192 TCAAACAGTA
*
84941202 AAATTAATACATGAA-
1 AAATTAACACAT-AAT
84941217 AAATTAACACAT-AT
1 AAATTAACACATAAT
*
84941231 AAATTCACACATAAT
1 AAATTAACACATAAT
84941246 AAA
1 AAA
84941249 CACAAAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 11 0.39
15 16 0.57
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.26
Consensus pattern (15 bp):
AAATTAACACATAAT
Found at i:84953858 original size:28 final size:28
Alignment explanation
Indices: 84953826--84953904 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
84953816 GCAATCAAAT
* *
84953826 ATGGCACTCAGTGTACAAAATATTGAGA
1 ATGGCACTTAGTGTGCAAAATATTGAGA
* ** *
84953854 ATGGCACTTAGCGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTGCAAAATATTGAGA
*
84953882 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCAAAATAT
84953905 CGAATGATTC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTGAGA
Found at i:84954344 original size:21 final size:22
Alignment explanation
Indices: 84954312--84954354 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
84954302 AAGAACGTAT
*
84954312 TATGATTTATGTGGAAATGAAA
1 TATGATTTATGTGCAAATGAAA
*
84954334 TATGA-TTATGTGCCAATGAAA
1 TATGATTTATGTGCAAATGAAA
84954355 CATAAATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (22 bp):
TATGATTTATGTGCAAATGAAA
Found at i:84957943 original size:13 final size:13
Alignment explanation
Indices: 84957925--84957958 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84957915 CAAAAATATT
*
84957925 ATTTAATTAATTA
1 ATTTAATTAACTA
84957938 ATTTAATTAACTA
1 ATTTAATTAACTA
*
84957951 AATTAATT
1 ATTTAATT
84957959 TCTCAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTTAATTAACTA
Found at i:84969205 original size:27 final size:27
Alignment explanation
Indices: 84969175--84969267 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
84969165 TAAACATGTT
* * *
84969175 ATGAAAGAAATGCCTTTGTAGTGAATC
1 ATGAAAGAAAAGCCTTTATAGCGAATC
*
84969202 ATGAAAGAAAAGCCTTTATGGCGAATC
1 ATGAAAGAAAAGCCTTTATAGCGAATC
* * * * *
84969229 ATGAAAAAAAAAACATTTGTGGCGAATC
1 ATG-AAAGAAAAGCCTTTATAGCGAATC
*
84969257 ATGCAAGAAAA
1 ATGAAAGAAAA
84969268 AAAATTGTGG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (27 bp):
ATGAAAGAAAAGCCTTTATAGCGAATC
Found at i:84969252 original size:28 final size:28
Alignment explanation
Indices: 84969197--84969271 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
84969187 CCTTTGTAGT
* * *
84969197 GAATCATG-AAAGAAAAGCCTTTATGGC
1 GAATCATGAAAAAAAAAACATTTATGGC
*
84969224 GAATCATGAAAAAAAAAACATTTGTGGC
1 GAATCATGAAAAAAAAAACATTTATGGC
84969252 GAATCATGCAAGAAAAAAAA
1 GAATCATG-AA-AAAAAAAA
84969272 TTGTGGTGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 8 0.20
28 23 0.56
29 2 0.05
30 8 0.20
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.19
Consensus pattern (28 bp):
GAATCATGAAAAAAAAAACATTTATGGC
Found at i:84972478 original size:40 final size:40
Alignment explanation
Indices: 84972420--84972643 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
84972410 TATTCGGATG
84972420 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* *
84972460 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
84972503 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
84972543 ATATCCGAGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* * * *
84972583 ATATCCGGGCTAAAACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
84972623 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
84972644 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 109 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
Found at i:84972563 original size:83 final size:79
Alignment explanation
Indices: 84972424--84972643 Score: 273
Period size: 83 Copynumber: 2.7 Consensus size: 79
84972414 CGGATGATAT
* **
84972424 CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCA
84972489 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
* *
84972507 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTATATCCG-GCTAAGTCCCGAAGGCATTCA
*
84972572 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* * * *
84972587 CCGGGCTAAAACCCGAAGGCATTTGTACGAGTTG-CTATATCCGGCTAAATCCCGAAG
1 CCGGGCTAAATCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGCTAAGTCCCGAAG
84972644 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.12
80 44 0.36
81 2 0.02
82 1 0.01
83 61 0.50
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTATATCCGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:84975916 original size:15 final size:15
Alignment explanation
Indices: 84975896--84975935 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
84975886 AAATGGTAAT
84975896 AAACAGTTTGCACAA
1 AAACAGTTTGCACAA
84975911 AAACAGTTTGCACAA
1 AAACAGTTTGCACAA
84975926 AAACAGTTTG
1 AAACAGTTTG
84975936 GACAGCAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (15 bp):
AAACAGTTTGCACAA
Found at i:84977685 original size:23 final size:23
Alignment explanation
Indices: 84977659--84977703 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
84977649 TGGGTATGTG
* * *
84977659 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
84977682 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
84977704 TTGAATTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:84992849 original size:21 final size:21
Alignment explanation
Indices: 84992823--84992866 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
84992813 TAAATCAATT
84992823 TCATACAAATTACTTCTAGAA
1 TCATACAAATTACTTCTAGAA
84992844 TCATACAAATTACTTCTAGAA
1 TCATACAAATTACTTCTAGAA
84992865 TC
1 TC
84992867 CAAGTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (21 bp):
TCATACAAATTACTTCTAGAA
Found at i:84994179 original size:28 final size:28
Alignment explanation
Indices: 84994139--84994196 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
84994129 AGCTTGGCCG
84994139 AATTACATATAGGTCCCTAGTAGCCCAA
1 AATTACATATAGGTCCCTAGTAGCCCAA
84994167 AATTACATATAGGTCCCTAGTAGCCCAA
1 AATTACATATAGGTCCCTAGTAGCCCAA
84994195 AA
1 AA
84994197 CATTCATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (28 bp):
AATTACATATAGGTCCCTAGTAGCCCAA
Found at i:85001533 original size:53 final size:53
Alignment explanation
Indices: 85001462--85001567 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
85001452 TAAAGGAAAG
85001462 AGAAAAAAAAAGATATCATCTTCTTCTCATTTCCTTCTCCACTGAAAATACCA
1 AGAAAAAAAAAGATATCATCTTCTTCTCATTTCCTTCTCCACTGAAAATACCA
85001515 AGAAAAAAAAAGATATCATCTTCTTCTCATTTCCTTCTCCACTGAAAATACCA
1 AGAAAAAAAAAGATATCATCTTCTTCTCATTTCCTTCTCCACTGAAAATACCA
85001568 GCAATTGAGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.30
Consensus pattern (53 bp):
AGAAAAAAAAAGATATCATCTTCTTCTCATTTCCTTCTCCACTGAAAATACCA
Found at i:85002560 original size:49 final size:49
Alignment explanation
Indices: 85002500--85002676 Score: 143
Period size: 49 Copynumber: 3.6 Consensus size: 49
85002490 TGTTATGTGT
* * *
85002500 CAGTATAAGACCTATCTGAGACATGGCATCGAAACCGATAAT-TGAGAGC
1 CAGTGTAAGACCTGTCTGAGACATGGCATCG-AACCGATAATATGAAAGC
* *
85002549 CAGTGTAAGACCTGTCTG-GAACATGGCATC-AGCCTCGAT-ATATGAAAGT
1 CAGTGTAAGACCTGTCTGAG-ACATGGCATCGA-AC-CGATAATATGAAAGC
* * ** * **
85002598 CAGTGTAAGACCTGTCT-AGGACACGGTATCG-A-CTTTAATGTGCTAGC
1 CAGTGTAAGACCTGTCTGA-GACATGGCATCGAACCGATAATATGAAAGC
85002645 CAGTGTAAGACCATGTCTGAGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGAGACATGGCATCG
85002677 GCATTTGATC
Statistics
Matches: 102, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
46 2 0.02
47 19 0.19
48 19 0.19
49 61 0.60
50 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGAGACATGGCATCGAACCGATAATATGAAAGC
Found at i:85003405 original size:30 final size:30
Alignment explanation
Indices: 85003364--85003432 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
85003354 CACACGAGTA
*
85003364 GACACATGGGCGTGTGAATAGGCCATGTGT
1 GACACACGGGCGTGTGAATAGGCCATGTGT
*
85003394 GACACACGGGCGTGTGTATAGGCCATGTGT
1 GACACACGGGCGTGTGAATAGGCCATGTGT
85003424 GACACACGG
1 GACACACGG
85003433 TATGCCCCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.20
Consensus pattern (30 bp):
GACACACGGGCGTGTGAATAGGCCATGTGT
Found at i:85006450 original size:15 final size:15
Alignment explanation
Indices: 85006430--85006476 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
85006420 AATAGTTTGT
85006430 AACACTTGGATAAGG
1 AACACTTGGATAAGG
85006445 AACACTTGGATAAGG
1 AACACTTGGATAAGG
85006460 AACACTTGGATAAGG
1 AACACTTGGATAAGG
85006475 AA
1 AA
85006477 TGATAGAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.19
Consensus pattern (15 bp):
AACACTTGGATAAGG
Found at i:85008143 original size:25 final size:25
Alignment explanation
Indices: 85008115--85008164 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
85008105 AATAGAACAT
85008115 GCCACCCTCAAGGTATTTTAGTCTA
1 GCCACCCTCAAGGTATTTTAGTCTA
85008140 GCCACCCTCAAGGTATTTTAGTCTA
1 GCCACCCTCAAGGTATTTTAGTCTA
85008165 TCTTTTCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (25 bp):
GCCACCCTCAAGGTATTTTAGTCTA
Found at i:85008713 original size:23 final size:23
Alignment explanation
Indices: 85008693--85008738 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
85008683 TTAAATTTTT
85008693 AATTATTTAGTGACAATATTTAG
1 AATTATTTAGTGACAATATTTAG
*
85008716 AATTATTTAGTGATAATATTTAG
1 AATTATTTAGTGACAATATTTAG
85008739 GAAAAATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
AATTATTTAGTGACAATATTTAG
Found at i:85014619 original size:46 final size:46
Alignment explanation
Indices: 85014458--85014633 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 46
85014448 TGTAACCCGC
* * *** *
85014458 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * * *
85014504 CCATGAGTGAACTCAGACTCAAATCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
85014554 -C-TCA-CGAACTTGGACTCAACTCAACAAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
85014597 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85014634 TGCTTAACCA
Statistics
Matches: 99, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.58
47 25 0.25
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:85019587 original size:23 final size:23
Alignment explanation
Indices: 85019557--85019606 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
85019547 ATTTTTAAAT
*
85019557 TTTA-AATTATATAGTGATAATA
1 TTTAGAATTATATACTGATAATA
*
85019579 TTTAGAATTATTTACTGATAATA
1 TTTAGAATTATATACTGATAATA
85019602 TTTAG
1 TTTAG
85019607 GAAAGATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (23 bp):
TTTAGAATTATATACTGATAATA
Found at i:85020944 original size:14 final size:12
Alignment explanation
Indices: 85020910--85020946 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
85020900 ATAATAATAA
85020910 GTTAGTATATAT
1 GTTAGTATATAT
85020922 GTTAGTATATAT
1 GTTAGTATATAT
85020934 GTTA-TATTATAT
1 GTTAGTA-TATAT
85020946 G
1 G
85020947 ATAACTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.51
Consensus pattern (12 bp):
GTTAGTATATAT
Found at i:85023349 original size:21 final size:22
Alignment explanation
Indices: 85023314--85023379 Score: 125
Period size: 22 Copynumber: 3.0 Consensus size: 22
85023304 GTGTATATTT
85023314 ATTTTATGAAATTATTCAAAGA
1 ATTTTATGAAATTATTCAAAGA
85023336 ATTTTATG-AATTATTCAAAGA
1 ATTTTATGAAATTATTCAAAGA
85023357 ATTTTATGAAATTATTCAAAGA
1 ATTTTATGAAATTATTCAAAGA
85023379 A
1 A
85023380 GACTCAAGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.49
22 22 0.51
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (22 bp):
ATTTTATGAAATTATTCAAAGA
Found at i:85024455 original size:27 final size:27
Alignment explanation
Indices: 85024417--85024468 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
85024407 TAGCTATACA
85024417 TGCCATACTTATGTGTTGATAGTGTAT
1 TGCCATACTTATGTGTTGATAGTGTAT
85024444 TGCCATACTTATGTGTTGATAGTGT
1 TGCCATACTTATGTGTTGATAGTGT
85024469 GACGACTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.44
Consensus pattern (27 bp):
TGCCATACTTATGTGTTGATAGTGTAT
Found at i:85028320 original size:40 final size:39
Alignment explanation
Indices: 85028263--85028447 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
85028253 ATTAAATGAT
* * *
85028263 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
85028303 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
85028343 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
85028383 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
85028423 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
85028448 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:85028399 original size:80 final size:80
Alignment explanation
Indices: 85028262--85028468 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
85028252 AATTAAATGA
* * ** * *
85028262 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
85028327 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
85028340 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
85028405 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
85028422 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
85028469 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:85028453 original size:40 final size:39
Alignment explanation
Indices: 85028261--85028468 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
85028251 CAATTAAATG
* * ** *
85028261 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
85028301 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
85028341 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
85028381 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
85028421 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
85028461 ATATCCGG
1 ATATCCGG
85028469 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:85036381 original size:80 final size:80
Alignment explanation
Indices: 85036245--85036450 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
85036235 AATTAAATGA
* * ** * *
85036245 TATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
85036309 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
85036322 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
85036387 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
85036404 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
85036451 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 12 0.11
80 93 0.85
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:85036428 original size:40 final size:39
Alignment explanation
Indices: 85036244--85036450 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
85036234 CAATTAAATG
* * * *
85036244 ATATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * * * * *
85036283 AAATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
* *
85036323 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
85036363 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * *
85036403 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
85036443 ATATCCGG
1 ATATCCGG
85036451 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 14 0.10
40 127 0.89
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:85043388 original size:28 final size:28
Alignment explanation
Indices: 85043319--85043419 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85043309 GACAAGATTG
* * * *
85043319 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85043349 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85043377 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85043406 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85043420 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85050285 original size:40 final size:40
Alignment explanation
Indices: 85050230--85050397 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
85050220 TGAATGATAC
* *
85050230 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
85050270 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
85050310 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
85050350 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
85050390 CC-GGCTAA
1 CCGGGCTAA
85050398 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:85063093 original size:42 final size:42
Alignment explanation
Indices: 85062996--85063170 Score: 156
Period size: 42 Copynumber: 4.2 Consensus size: 42
85062986 ACACATAGAA
* * * * **
85062996 TCATACCAATACCATATCCCAGATATGGTCTTACATGGGATC
1 TCATAACAATGCCATATCCCAGAAATGGTCTTACACGAAATC
* *** * * *
85063038 TCACATTGATGCCAATAGCCCAAAAATGGTCTTACACG-ATTC
1 TCATAACAATGCC-ATATCCCAGAAATGGTCTTACACGAAATC
* * *
85063080 TCATATCAATGCCATATCCCAGACATAGTCTTACACGAAATC
1 TCATAACAATGCCATATCCCAGAAATGGTCTTACACGAAATC
* *
85063122 TCATAACAATGCCATATCCCAGATATGGTCTTACATGTAAA-C
1 TCATAACAATGCCATATCCCAGAAATGGTCTTACACG-AAATC
85063164 TCATAAC
1 TCATAAC
85063171 CCTAATGTCA
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
41 20 0.19
42 64 0.60
43 23 0.21
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (42 bp):
TCATAACAATGCCATATCCCAGAAATGGTCTTACACGAAATC
Found at i:85065220 original size:40 final size:40
Alignment explanation
Indices: 85065175--85065342 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
85065165 CGGAATATAA
85065175 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
85065215 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
85065255 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85065295 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
85065335 CCGGATAT
1 CCGGATAT
85065343 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85068216 original size:20 final size:18
Alignment explanation
Indices: 85068191--85068249 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 18
85068181 ATTAACATGT
85068191 TTAATCATAATTAATTAA
1 TTAATCATAATTAATTAA
*
85068209 TCTTAATCATGATTTAACTTAA
1 --TTAATCAT-AATTAA-TTAA
85068231 TTAATCTATATATTAATTA
1 TTAATC-ATA-ATTAATTA
85068250 GTCTAATGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 18 0.55
21 11 0.33
22 4 0.12
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATCATAATTAATTAA
Found at i:85086271 original size:6 final size:6
Alignment explanation
Indices: 85086260--85086285 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
85086250 TTTTAAATTA
85086260 TATATT TATATT TATATT TATATT TA
1 TATATT TATATT TATATT TATATT TA
85086286 AACTCTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TATATT
Found at i:85089276 original size:45 final size:44
Alignment explanation
Indices: 85089216--85089345 Score: 107
Period size: 44 Copynumber: 2.9 Consensus size: 44
85089206 TGAACTTGTT
* * *
85089216 GATTTGGTCCAAGTTCGTGGTATATGTGAAGCATCCGAGCTCATC
1 GATTTGGTCCAAGTTCATGGTAGATGCGAA-CATCCGAGCTCATC
** * * *
85089261 GATTTGGTCTGAGTTCATTGTGGATGCGAACATCCGAGCTCATT
1 GATTTGGTCCAAGTTCATGGTAGATGCGAACATCCGAGCTCATC
* * * ** * * *
85089305 AAGTTGGTCCGAGTTCATTATGGATGCGAGCATCTGAGCTC
1 GATTTGGTCCAAGTTCATGGTAGATGCGAACATCCGAGCTC
85089346 GTTGAGTTGG
Statistics
Matches: 71, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 48 0.68
45 23 0.32
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (44 bp):
GATTTGGTCCAAGTTCATGGTAGATGCGAACATCCGAGCTCATC
Found at i:85089312 original size:44 final size:44
Alignment explanation
Indices: 85089247--85089382 Score: 191
Period size: 44 Copynumber: 3.1 Consensus size: 44
85089237 ATATGTGAAG
* * *
85089247 CATCCGAGCTCATCGATTTGGTCTGAGTTCATTGTGGATGCGAA
1 CATCCGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCGAA
* * *
85089291 CATCCGAGCTCATTAAGTTGGTCCGAGTTCATTATGGATGCGAG
1 CATCCGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCGAA
* *
85089335 CATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATGGATGCGATA
1 CATCCGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCGA-A
85089380 CAT
1 CAT
85089383 GTAATTGGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 77 0.96
45 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (44 bp):
CATCCGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCGAA
Found at i:85093058 original size:2 final size:2
Alignment explanation
Indices: 85093053--85093098 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
85093043 ACACACACAC
85093053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85093095 AT AT
1 AT AT
85093099 GCATCATTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85093607 original size:33 final size:33
Alignment explanation
Indices: 85093570--85093648 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
85093560 TGGCCCTGCC
* *
85093570 ATGGTCTTACACTCATAATGCCATAACCCAGTT
1 ATGGTCTTACACTCAGAATGCCATAACCCAGCT
*
85093603 ATGGTCTTATCA-TCAGGATGCCATAACCCAGCT
1 ATGGTCTTA-CACTCAGAATGCCATAACCCAGCT
85093636 ATGGTCTTACACT
1 ATGGTCTTACACT
85093649 TATACACATA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
32 2 0.05
33 37 0.90
34 2 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACACTCAGAATGCCATAACCCAGCT
Found at i:85093706 original size:105 final size:101
Alignment explanation
Indices: 85093591--85093780 Score: 283
Period size: 105 Copynumber: 1.8 Consensus size: 101
85093581 CTCATAATGC
*
85093591 CATAACCCAGTTATGGTCTTATCATCAG-GATGCCATAACCCAGCTATGGTCTTACACTTATACA
1 CATAACCCAGTTATGGTCTTATCA-CAGAAATGCCATAACCCAGCTATGGTCTTACA-TT-TA-A
85093655 CATACTGCCATGGTCCAACCATGGTTTTACGTTCACGGTTT
62 -ATACTGCCATGGTCCAACCATGGTTTTACGTTCACGGTTT
* * * *
85093696 CATAATCCAGTTATGGTCTTTTCACTGAAATGCCATAACCCAGCTATGGTCTTACATTTAAATAT
1 CATAACCCAGTTATGGTCTTATCACAGAAATGCCATAACCCAGCTATGGTCTTACATTTAAATAC
85093761 TGCCATGGTCCAACCATGGT
66 TGCCATGGTCCAACCATGGT
85093781 CTTATCTATC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
101 23 0.29
102 1 0.01
103 2 0.03
104 4 0.05
105 49 0.62
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
CATAACCCAGTTATGGTCTTATCACAGAAATGCCATAACCCAGCTATGGTCTTACATTTAAATAC
TGCCATGGTCCAACCATGGTTTTACGTTCACGGTTT
Found at i:85096590 original size:56 final size:53
Alignment explanation
Indices: 85096518--85096654 Score: 211
Period size: 56 Copynumber: 2.5 Consensus size: 53
85096508 GTCGCTATAA
85096518 GGGATTTAGCCTGGACTAGTAATCCTGACATCACCTTATGAGTTTGTGATATGGGG
1 GGGATTTAGCCTGGACT-GTAATCCTGACATCACCTTATGAGTTTGTGATAT--GG
**
85096574 GGGATTTAGCCTGGACTGGTAATCCCAACATCACCTTATGAGTTTGTGATATGG
1 GGGATTTAGCCTGGACT-GTAATCCTGACATCACCTTATGAGTTTGTGATATGG
85096628 GGGATTTAGCCTGGACTGATAATCCTG
1 GGGATTTAGCCTGGACTG-TAATCCTG
85096655 CCATGAGATG
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
53 1 0.01
54 25 0.33
56 49 0.65
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (53 bp):
GGGATTTAGCCTGGACTGTAATCCTGACATCACCTTATGAGTTTGTGATATGG
Found at i:85099282 original size:29 final size:29
Alignment explanation
Indices: 85099249--85099331 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
85099239 GTGATGAGAT
85099249 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85099278 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
85099307 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
85099332 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:85102727 original size:41 final size:40
Alignment explanation
Indices: 85102670--85102836 Score: 210
Period size: 40 Copynumber: 4.2 Consensus size: 40
85102660 TCGAATGATG
* * * * *
85102670 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
85102711 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85102751 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85102791 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AA
85102832 -CCGGG
1 TCCGGG
85102837 CTATGTCCGA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 83 0.75
41 27 0.25
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85102811 original size:80 final size:81
Alignment explanation
Indices: 85102671--85102848 Score: 252
Period size: 80 Copynumber: 2.2 Consensus size: 81
85102661 CGAATGATGT
* *
85102671 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
85102736 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * * *
85102752 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
85102816 GTGCGAATTACTATAA
66 GTGCGAATTACCAAAA
*
85102832 CCGGGCTATGT-CCGAAG
1 CCGGGCTAAGTCCCGAAG
85102849 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 6 0.07
80 54 0.63
81 26 0.30
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:85109986 original size:40 final size:40
Alignment explanation
Indices: 85109886--85110064 Score: 196
Period size: 40 Copynumber: 4.5 Consensus size: 40
85109876 CGAATGATGT
* * * * *
85109886 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * * *
85109927 TCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
85109967 CCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
85110007 CCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
85110047 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
85110065 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 24, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 91 0.80
41 23 0.20
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:85110026 original size:80 final size:81
Alignment explanation
Indices: 85109886--85110060 Score: 235
Period size: 80 Copynumber: 2.2 Consensus size: 81
85109876 CGAATGATGT
* * * *
85109886 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATTCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
85109951 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * * *
85109967 CCGGGTTAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
85110031 GTGCGAATTACTATAA
66 GTGCGAATTACCAAAA
*
85110047 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
85110061 GAAGACAATC
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 56 0.69
81 25 0.31
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:85110089 original size:80 final size:80
Alignment explanation
Indices: 85109920--85110104 Score: 194
Period size: 80 Copynumber: 2.3 Consensus size: 80
85109910 GTGCTAAGTG
* * * * *
85109920 ACTAAATTCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCAAAG
1 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCAAAG
* * * * *
85109985 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTC
* * * *
85110000 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCAAAG
*
85110065 ACAATCGAGCTAGTC
66 ACAATCGAGCGAGTC
* *
85110080 GCTATATCC-GGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTT-AATTCCCGAAGG
85110105 TACGTGATTC
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 11 0.13
80 76 0.87
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCAAAG
ACAATCGAGCGAGTC
Found at i:85113266 original size:40 final size:41
Alignment explanation
Indices: 85113169--85113385 Score: 286
Period size: 40 Copynumber: 5.5 Consensus size: 41
85113159 TCGGATGATA
* *
85113169 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
85113209 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* *
85113248 CTGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* **
85113288 CCGGGCTAAGTCGCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* *
85113328 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* *
85113368 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85113386 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 52 0.33
40 107 0.67
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
Found at i:85114782 original size:29 final size:29
Alignment explanation
Indices: 85114738--85114797 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
85114728 GGTGTTACAC
85114738 AAACTCAAGTTCTGATTGCCCGTCAGTCT
1 AAACTCAAGTTCTGATTGCCCGTCAGTCT
*
85114767 AAACTCAAGTTTTGATTGCCCGTCAGTCT
1 AAACTCAAGTTCTGATTGCCCGTCAGTCT
85114796 AA
1 AA
85114798 GGATGAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (29 bp):
AAACTCAAGTTCTGATTGCCCGTCAGTCT
Found at i:85117725 original size:29 final size:29
Alignment explanation
Indices: 85117690--85117820 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
85117680 GTGACGAGAT
85117690 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85117719 TGGCACTAAGTGTGCATGCT-GAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
85117747 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
85117776 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85117805 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
85117821 GGCTTAAATC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 28 0.32
29 59 0.68
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:85117751 original size:28 final size:29
Alignment explanation
Indices: 85117690--85117782 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
85117680 GTGACGAGAT
*
85117690 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
85117719 TGGCACTAAGTGTGCATGCT-GAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
85117747 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
85117776 CGGCACT
1 TGGCACT
85117783 GGGTGTGCGA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 28 0.47
29 32 0.53
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:85124885 original size:2 final size:2
Alignment explanation
Indices: 85124878--85124909 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
85124868 TTTGGAAGTG
*
85124878 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85124910 CATAAGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:85125400 original size:29 final size:29
Alignment explanation
Indices: 85125365--85125496 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
85125355 GTGACGAGAT
85125365 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
85125394 TGGCACTAAGTGTGCATGCTAGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
85125423 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
85125452 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85125481 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
85125497 GGCTTAAATC
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:85133677 original size:33 final size:33
Alignment explanation
Indices: 85133635--85133700 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
85133625 CGAACTCGTC
85133635 CGTAGAGTTAAACTCA-TCCACACAATCAATCAT
1 CGTAGAGTTAAACT-AGTCCACACAATCAATCAT
85133668 CGTAGAGTTAAACTAGTCCACACAATCAATCAT
1 CGTAGAGTTAAACTAGTCCACACAATCAATCAT
85133701 ACAGTTCATG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.24
Consensus pattern (33 bp):
CGTAGAGTTAAACTAGTCCACACAATCAATCAT
Found at i:85138439 original size:24 final size:24
Alignment explanation
Indices: 85138407--85138452 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
85138397 TACAAACTTA
*
85138407 CTAAGCATGTAATGCTTTCTCCGT
1 CTAAGCATGTAATACTTTCTCCGT
85138431 CTAAGCATGTAATACTTTCTCC
1 CTAAGCATGTAATACTTTCTCC
85138453 ATTTAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (24 bp):
CTAAGCATGTAATACTTTCTCCGT
Found at i:85139920 original size:16 final size:15
Alignment explanation
Indices: 85139899--85139928 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
85139889 ATCTGAACTA
85139899 CCCCAAAATTCTTTGG
1 CCCCAAAATT-TTTGG
85139915 CCCCAAAATTTTTG
1 CCCCAAAATTTTTG
85139929 AGTTATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (15 bp):
CCCCAAAATTTTTGG
Found at i:85147296 original size:19 final size:19
Alignment explanation
Indices: 85147272--85147381 Score: 199
Period size: 19 Copynumber: 5.9 Consensus size: 19
85147262 ATAATCTTCA
85147272 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85147291 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85147310 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85147327 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85147345 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85147364 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
85147382 AGATATGATT
Statistics
Matches: 88, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 56 0.64
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:85147337 original size:54 final size:56
Alignment explanation
Indices: 85147272--85147388 Score: 197
Period size: 54 Copynumber: 2.1 Consensus size: 56
85147262 ATAATCTTCA
85147272 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
85147327 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
85147382 A-GATATG
1 ATGATATG
85147389 ATTTCGTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
54 41 0.69
55 8 0.14
56 10 0.17
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (56 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:85147407 original size:22 final size:22
Alignment explanation
Indices: 85147272--85147404 Score: 113
Period size: 19 Copynumber: 6.8 Consensus size: 22
85147262 ATAATCTTCA
85147272 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85147291 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85147310 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85147327 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85147345 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85147364 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
85147386 ATGATTTCGTAATCTTAGA
1 ATGATAT-GCAATCTTAGA
85147405 GATTTAATTT
Statistics
Matches: 105, Mismatches: 2, Indels: 10
0.90 0.02 0.09
Matches are distributed among these distances:
17 16 0.15
18 16 0.15
19 53 0.50
22 10 0.10
23 10 0.10
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:85147696 original size:17 final size:17
Alignment explanation
Indices: 85147672--85147706 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85147662 TGTTTCTCAG
*
85147672 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
85147690 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
85147707 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:85154055 original size:29 final size:27
Alignment explanation
Indices: 85153958--85154055 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 27
85153948 TAATAAGCCT
85153958 GCACACTTAGTGCT-TAATAGTCGAACTC
1 GCACACTTAGTGCTATAA-A-TCGAACTC
*
85153986 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATA-AATCGAACTC
* *
85154014 GCACACTTAGTGCTATACAATTTGAACCC
1 GCACACTTAGTGCTATA-AA-TCGAACTC
85154043 GCACACTTAGTGC
1 GCACACTTAGTGC
85154056 CAATCTCATG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 40 0.65
29 21 0.34
30 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTATAAATCGAACTC
Found at i:85161128 original size:78 final size:78
Alignment explanation
Indices: 85160984--85161286 Score: 362
Period size: 78 Copynumber: 3.8 Consensus size: 78
85160974 TCTTCACATC
* ** * *
85160984 GAAGTAGATCCAAGATGATTTGGCATC-CTTGCGTT-GA-GAAGGAGCAGATCAAAGACATAGCA
1 GAAGCAGATCCAAGATGATTTGGCATCTC-TGTATTAGACG-GGGAGCAGATCGAAGACATAGCA
*
85161046 GATCTTACCTTCATT
64 GATCTGACCTTCATT
* * *
85161061 GAAGCAGATCTAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCTGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA
85161126 TCTGACCTTCATT
66 TCTGACCTTCATT
* * ** *
85161139 GAAGCAGATCCAAGGTGATTTGGCATCTCTGTATTAGATGAAGAGCAGATCGAAGACATAACAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA
85161204 T-TGGACCTTCATT
66 TCT-GACCTTCATT
* * *
85161217 GAATCAGATCCAAGATTACAGATTTGGCATCTCTGTATTAGACGGGCAGCAAATCGAAGACATAG
1 GAAGCAGATCCAAGA-T---GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
85161282 CAGAT
62 CAGAT
85161287 TTGGCTTTCA
Statistics
Matches: 193, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
77 30 0.16
78 117 0.61
79 2 0.01
82 44 0.23
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA
TCTGACCTTCATT
Found at i:85161213 original size:156 final size:157
Alignment explanation
Indices: 85160984--85161278 Score: 402
Period size: 156 Copynumber: 1.9 Consensus size: 157
85160974 TCTTCACATC
* * *
85160984 GAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGAGAAGGAGCAGATCAAAGACATAGCAGAT
1 GAAGCAGATCCAAGATGATTTGGCATCCTTGCATTGAGAAGGAGCAGATCAAAGACATAACAGAT
* * * *
85161049 CTTACCTTCATTGAAGCAGATCTAAGA-T-GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
66 CTGACCTTCATTGAAGCAGATCCAAGATTAGATTTGGCATCTCTGTATTAGACGGGCAGCAAATC
85161112 GAAGACACAGCTGATCTGACCTTCATT
131 GAAGACACAGCTGATCTGACCTTCATT
* * *
85161139 GAAGCAGATCCAAGGTGATTTGGCAT-CTCTGTATTAGATGAA-GAGCAGATCGAAGACATAACA
1 GAAGCAGATCCAAGATGATTTGGCATCCT-TGCATT-GA-GAAGGAGCAGATCAAAGACATAACA
*
85161202 GAT-TGGACCTTCATTGAATCAGATCCAAGATTACAGATTTGGCATCTCTGTATTAGACGGGCAG
63 GATCT-GACCTTCATTGAAGCAGATCCAAGATT--AGATTTGGCATCTCTGTATTAGACGGGCAG
85161266 CAAATCGAAGACA
125 CAAATCGAAGACA
85161279 TAGCAGATTT
Statistics
Matches: 121, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
154 2 0.02
155 29 0.24
156 46 0.38
157 4 0.03
160 40 0.33
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (157 bp):
GAAGCAGATCCAAGATGATTTGGCATCCTTGCATTGAGAAGGAGCAGATCAAAGACATAACAGAT
CTGACCTTCATTGAAGCAGATCCAAGATTAGATTTGGCATCTCTGTATTAGACGGGCAGCAAATC
GAAGACACAGCTGATCTGACCTTCATT
Found at i:85161500 original size:78 final size:78
Alignment explanation
Indices: 85161368--85161739 Score: 525
Period size: 78 Copynumber: 4.8 Consensus size: 78
85161358 CGAAGAAATA
* * * * * *
85161368 GATTTGGCATCTATATATTCGACAGAGAACAGATCGAAGACATAGCAGAGCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
85161433 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
85161446 GATTTGGCATCTCTGTATTAGACAGGGAGTAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
85161511 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* **
85161524 GATTTGGCATCTCTATATTAGAC-GGAGAGCAGATCGAAGACATAATAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTG
*
85161587 AAACAGATCCAAGAT
64 AAGCAGATCCAAGAT
* * * *
85161602 GATTTGGCATCTCTGTATTAGACGGGGAGAAGTTCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
85161666 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
85161680 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGTAGACATAGCAGATCTGACCTTCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
85161740 CGTGTTTACA
Statistics
Matches: 265, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
77 3 0.01
78 259 0.98
79 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:85161779 original size:447 final size:446
Alignment explanation
Indices: 85160984--85161828 Score: 1197
Period size: 447 Copynumber: 1.9 Consensus size: 446
85160974 TCTTCACATC
* * *
85160984 GAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGAGAAGGAGCAGATCAAAGACATAGCAGAT
1 GAAGCAGATCCAAGATGATTTGGCATCCTTGCATTGAGAAGGAGCAGATCAAAGACACAGCAGAT
* * * *
85161049 CTTACCTTCATTGAAGCAGATCTAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA
66 CTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGAGAGCAGATCGA
* * * *
85161114 AGACACAGCTGATCTGACCTTCATTGAAGCAGATCCAAGGTGATTTGGCATCTCTGTATTAGATG
131 AGACACAGATGATCTGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACG
* *
85161179 AAGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAATCAGATCCAAGATTACAGATTTGG
196 AAGAGAAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATT--AGATTTGG
* * *
85161244 CATCTCTGTATTAGACGGGCAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCT
259 CATCTCTGTATTAGACGGGCAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCT
*
85161309 GAAGCAGATCTAAGATGATTTGGCATCTCTGTACT-GTCAGAGAACAAATC-GAAGA-AATAGAT
324 GAAGCAGATCTAAGATGATTTGGCATCTCTGTACTAGTCAGAGAACAAATCAG-AGATAACAGAT
85161371 TTGGCATCTATATATTCGACAGAGAACAGATCGAAGACATAGCAGAGCTGACCTTCATT
388 TTGGCATCTATATATTCGACAGAGAACAGATCGAAGACATAGCAGAGCTGACCTTCATT
* * *
85161430 GAAGCAGATCCAAGATGATTTGGCAT-CTCTGTATT-AGACAGGGAGTAGATCGAAGACACAGCA
1 GAAGCAGATCCAAGATGATTTGGCATCCT-TGCATTGAGA-A-GGAGCAGATCAAAGACACAGCA
*
85161493 GATCTGACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTATATTAGACGGAGAGCAGAT
63 GATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGAGAGCAGAT
*
85161558 CGAAGACATA-ATAGAT-TGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATT
128 CGAAGACACAGAT-GATCT-GACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATT
** *
85161621 AGACGGGGAGAAGTTCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGA-T-GATT
191 AGACGAAGAGAAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATTAGATT
* * *
85161684 TGGCATCTCTGTATTAGACGGGGAGCAGATCGTAGACATAGCAGATCTGACCTTCACGTGTTTAC
256 TGGCATCTCTGTATTAGACGGGCAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
* * * * * *
85161749 -ATCGAAGCAGATCTAAGATTACATATTTGGCATCTCTGTATTAGTCGGGGAGCAAATCAGAGAT
321 GCT-GAAGCAGATCTAAGA-T---GATTTGGCATCTCTGTACTAGTCAGAGAACAAATCAGAGAT
85161813 AACAGATTTGGCATCT
381 AACAGATTTGGCATCT
85161829 CTGTATTAGA
Statistics
Matches: 352, Mismatches: 34, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
442 1 0.00
443 78 0.22
444 1 0.00
445 5 0.01
446 33 0.09
447 203 0.58
448 15 0.04
449 16 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (446 bp):
GAAGCAGATCCAAGATGATTTGGCATCCTTGCATTGAGAAGGAGCAGATCAAAGACACAGCAGAT
CTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGAGAGCAGATCGA
AGACACAGATGATCTGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACG
AAGAGAAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATTAGATTTGGCA
TCTCTGTATTAGACGGGCAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCTGA
AGCAGATCTAAGATGATTTGGCATCTCTGTACTAGTCAGAGAACAAATCAGAGATAACAGATTTG
GCATCTATATATTCGACAGAGAACAGATCGAAGACATAGCAGAGCTGACCTTCATT
Found at i:85161837 original size:45 final size:45
Alignment explanation
Indices: 85161680--85161947 Score: 181
Period size: 45 Copynumber: 5.9 Consensus size: 45
85161670 GATCCAAGAT
* * *
85161680 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGTAGACATAGCA
1 GATTTGGCATCTCTGTATTAGTCGGGGAGCAGATCG-A-AGATAACA
* * * * * * * *
85161727 GATCTGACCTTCACGTGT-TTACATC--GAAGCAGATCTAAGATTACA
1 GATTTG-GCATCTC-TGTATTA-GTCGGGGAGCAGATCGAAGATAACA
* *
85161772 TATTTGGCATCTCTGTATTAGTCGGGGAGCAAATC-AGAGATAACA
1 GATTTGGCATCTCTGTATTAGTCGGGGAGCAGATCGA-AGATAACA
* * *
85161817 GATTTGGCATCTCTGTATTAGAT-GGGAAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAG-TCGGGGAGCAGATCGAAGATAACA
* * * * * * *
85161861 AATTTGGCGTCTTTTTATTAGACGGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTAGTCGGGGAGCAGATCGAAGATAACA
* * *
85161906 GATTTGGCGTCTCTGTATTAGAT-GGGCAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAG-TCGGGGAGCAGATCGAAGATA
85161948 GTAGATATCG
Statistics
Matches: 167, Mismatches: 42, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
43 5 0.03
44 42 0.25
45 92 0.55
46 3 0.02
47 14 0.08
48 7 0.04
49 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGTCGGGGAGCAGATCGAAGATAACA
Found at i:85161891 original size:89 final size:89
Alignment explanation
Indices: 85161773--85161939 Score: 237
Period size: 89 Copynumber: 1.9 Consensus size: 89
85161763 AAGATTACAT
* *
85161773 ATTTGGCATCTCTGTATTAGTCGGGGAGCAAATC-AGAGATAACAGATTTGGCATCTCTGTATTA
1 ATTTGGCATCTCTGTATTAGACGGAGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATTA
85161837 GATGGGAAGCAGATTGAAGAAGCAA
65 GATGGGAAGCAGATTGAAGAAGCAA
* * * * * *
85161862 ATTTGGCGTCTTTTTATTAGACGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
*
85161927 ATGGGCAGCAGAT
66 ATGGGAAGCAGAT
85161940 CAAAGATAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
89 67 0.99
90 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
ATGGGAAGCAGATTGAAGAAGCAA
Found at i:85161953 original size:45 final size:44
Alignment explanation
Indices: 85161754--85161947 Score: 185
Period size: 45 Copynumber: 4.3 Consensus size: 44
85161744 TTTACATCGA
* * *
85161754 AGCAGATCTAAGATTACATATTTGGCATCTCTGTATTAG-TCGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGAT--GGG
* *
85161799 AGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTAGATGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGATGGG
** * * * * * *
85161843 AAGCAGATTGAAGA-AGCAAATTTGGCGTCTTTTTATTAGACGGAG
1 -AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGATGG-G
* * *
85161888 AGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATTAGATGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGATGGG
85161932 CAGCAGATCAAAGATA
1 -AGCAGATCAAAGATA
85161948 GTAGATATCG
Statistics
Matches: 121, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
44 39 0.32
45 81 0.67
46 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (44 bp):
AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGATGGG
Found at i:85162316 original size:17 final size:18
Alignment explanation
Indices: 85162294--85162371 Score: 67
Period size: 17 Copynumber: 4.4 Consensus size: 18
85162284 ATGGGAATAT
85162294 AATCTTCA-ATGATATGC
1 AATCTTCATATGATATGC
*
85162311 AATCTTAGATATGATA--C
1 AATCTT-CATATGATATGC
*
85162328 AATCTTAGATATGAT-TGC
1 AATCTT-CATATGATATGC
*
85162346 AATCTTAGATATGATATGC
1 AATCTT-CATATGATATGC
85162365 AAT-TTCA
1 AATCTTCA
85162372 GAAGATATGA
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
17 23 0.43
18 19 0.35
19 12 0.22
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTCATATGATATGC
Done.