Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 278 of 425
Found at i:85942827 original size:39 final size:39
Alignment explanation
Indices: 85942773--85942852 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
85942763 ATAATATGAC
* *
85942773 ATTTTACACATATATTTCCTATGTAGTTGATTATACACA
1 ATTTTACACATATATTTCCTATATAGCTGATTATACACA
*
85942812 ATTTTACACATATATTTCCTATATAGCTGATTATAGACA
1 ATTTTACACATATATTTCCTATATAGCTGATTATACACA
85942851 AT
1 AT
85942853 CACACATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.42
Consensus pattern (39 bp):
ATTTTACACATATATTTCCTATATAGCTGATTATACACA
Found at i:85944120 original size:16 final size:16
Alignment explanation
Indices: 85944101--85944131 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85944091 CTTCTTCACT
85944101 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
85944117 TACTTACTTACTTAA
1 TACTCACTTACTTAA
85944132 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:85944137 original size:20 final size:20
Alignment explanation
Indices: 85944098--85944137 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
85944088 AAACTTCTTC
* *
85944098 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
85944118 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
85944138 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:85944248 original size:23 final size:24
Alignment explanation
Indices: 85944210--85944254 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
85944200 TTTGCTCATC
*
85944210 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
85944234 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
85944255 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:85944514 original size:108 final size:110
Alignment explanation
Indices: 85944370--85944570 Score: 334
Period size: 108 Copynumber: 1.8 Consensus size: 110
85944360 ATCCTTTTGA
* * *
85944370 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
85944433 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
85944478 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
85944543 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
85944571 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
108 50 0.59
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:85944577 original size:55 final size:54
Alignment explanation
Indices: 85944323--85944577 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
85944313 ACACGGGTAC
* *
85944323 CTTACC-ATTGCCATGACTTGTCATGGTCTTA-AGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACA-TGGTATCCTTGCCTTAGAAA
* * *
85944372 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * *
85944425 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
85944480 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
85944533 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
85944578 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 4 0.02
53 44 0.26
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:85944697 original size:22 final size:22
Alignment explanation
Indices: 85944671--85944737 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
85944661 TGCTTGAGTC
85944671 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
85944693 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
85944715 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
85944737 T
1 T
85944738 AAATATACAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.46
Consensus pattern (22 bp):
TTCTTTGAATAATTTCATAAAA
Found at i:85949822 original size:40 final size:39
Alignment explanation
Indices: 85949727--85949931 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 39
85949717 CGGAATACAA
* * *
85949727 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATTTAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
** *
85949766 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
*
85949806 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85949846 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
85949886 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
85949926 CCGGAT
1 CCGGAT
85949932 ATCATTTAAT
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 106 0.75
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATTTAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85949893 original size:80 final size:81
Alignment explanation
Indices: 85949727--85949931 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
85949717 CGGAATACAA
* * * *
85949727 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAG-CCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85949790 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85949806 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
85949869 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
85949886 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85949932 ATCATTTAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 37 0.34
80 67 0.62
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85957750 original size:40 final size:39
Alignment explanation
Indices: 85957705--85957912 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
85957695 CGGAATACAA
*
85957705 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85957745 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85957785 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
85957825 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
85957865 CCGGATTTAACTACTAGCAAAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85957905 CCGGATAT
1 CCGGATAT
85957913 CATTTAATTG
Statistics
Matches: 141, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85957852 original size:80 final size:81
Alignment explanation
Indices: 85957705--85957910 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
85957695 CGGAATACAA
* * * *
85957705 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85957769 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85957785 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
85957848 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
85957865 CCGGATTTAACTACTAGCAAAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85957911 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85959974 original size:28 final size:28
Alignment explanation
Indices: 85959905--85960005 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85959895 GACAAGATTG
* * * *
85959905 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85959935 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85959963 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85959992 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85960006 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85967925 original size:28 final size:28
Alignment explanation
Indices: 85967856--85967956 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85967846 GACAAGATTG
* * * *
85967856 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85967886 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85967914 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85967943 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85967957 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85989004 original size:28 final size:27
Alignment explanation
Indices: 85988941--85989010 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
85988931 ATAGTGAGTC
85988941 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
85988968 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
85988996 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85989011 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:85995544 original size:46 final size:46
Alignment explanation
Indices: 85995423--85995641 Score: 149
Period size: 46 Copynumber: 4.6 Consensus size: 46
85995413 GTCAGATGCT
** * *
85995423 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGTATATC-TGTGCC
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCT-TA-TGTCTCATG-GCC
* * * * * *
85995473 GATTCCATGTCCCAAACATGCCTTACCCTGGCTTATGTCTCGTGGCC
1 GA-TGCATGTCCCAGACAGGTCTTACACTGGCTTATGTCTCATGGCC
85995520 GATGCATGTCCCAGACAGGTCTTACACTAGCGC-T-TGTCTCAAT-GCC
1 GATGCATGTCCCAGACAGGTCTTACACT-G-GCTTATGTCTC-ATGGCC
* * * * * *
85995566 GCTACCATGTCTCAGACATGGTCTTAGACTGGCTTACGTCTCAAGGCC
1 GAT-GCATGTCCCAGACA-GGTCTTACACTGGCTTATGTCTCATGGCC
* *
85995614 AATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACAGGTCTTACACT
85995642 AGCTCACACA
Statistics
Matches: 132, Mismatches: 27, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
46 43 0.33
47 39 0.30
48 25 0.19
49 10 0.08
50 14 0.11
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACAGGTCTTACACTGGCTTATGTCTCATGGCC
Found at i:85999810 original size:24 final size:24
Alignment explanation
Indices: 85999778--85999825 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
85999768 AGTGAGATAA
85999778 GCCTCATATCTTTTCCTCAAATAT
1 GCCTCATATCTTTTCCTCAAATAT
85999802 GCCTCATATCTTTTCCTCAAATAT
1 GCCTCATATCTTTTCCTCAAATAT
85999826 TTTTCAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.04, T:0.42
Consensus pattern (24 bp):
GCCTCATATCTTTTCCTCAAATAT
Found at i:86006625 original size:43 final size:43
Alignment explanation
Indices: 86006577--86006660 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
86006567 TACATGAATC
* *
86006577 GCATCCACCATGAACTTGTACCTCTCAACAAGCTCGGATGCTT
1 GCATCCACAATGAACTTGGACCTCTCAACAAGCTCGGATGCTT
* *
86006620 GCATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGC
1 GCATCCACAATGAACTTGGACCTCTCAACAAGCTCGGATGC
86006661 CACATATCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (43 bp):
GCATCCACAATGAACTTGGACCTCTCAACAAGCTCGGATGCTT
Found at i:86014423 original size:40 final size:40
Alignment explanation
Indices: 86014378--86014585 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
86014368 CGGAATACAA
* *
86014378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
86014418 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* *
86014458 CCGGATTTAACAACTTGCACGGATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
86014498 CCGGATGTGGTC-GCTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACAACTTGCACGAAT-GCCTTCGGGTCTTAGC
* ** * ** * *
86014538 TCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
86014578 CCGGATAT
1 CCGGATAT
86014586 CATTCAATTG
Statistics
Matches: 135, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.01
40 129 0.96
41 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:86014518 original size:80 final size:80
Alignment explanation
Indices: 86014378--86014584 Score: 213
Period size: 80 Copynumber: 2.6 Consensus size: 80
86014368 CGGAATACAA
* *
86014378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
86014442 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAGC
* * * * **
86014458 CCGGATTTAACAACTTGCACGGATGCCTTCGGGTCTTAGCCCGGATGTGGTCG-CTAGCACAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
* *
86014522 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAGC
* ** ** * *
86014538 TCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
86014585 TCATTCAATT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
79 4 0.04
80 97 0.93
81 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAGC
Found at i:86016461 original size:23 final size:21
Alignment explanation
Indices: 86016414--86016453 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86016404 AGCAAAGTAG
*
86016414 ACACGGTCGTGTGGCTAAGAA
1 ACACGGTCGTGTGGCCAAGAA
*
86016435 ACACGGTCGTGTGTCCAAG
1 ACACGGTCGTGTGGCCAAG
86016454 GTACACACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.20
Consensus pattern (21 bp):
ACACGGTCGTGTGGCCAAGAA
Found at i:86021591 original size:42 final size:42
Alignment explanation
Indices: 86021504--86021601 Score: 99
Period size: 43 Copynumber: 2.3 Consensus size: 42
86021494 AACTAGTACA
* * * ** *
86021504 ATGCCATATCCCAGATATGGTCTTACATGTTATCAAATATTG
1 ATGCCATGTCCCAGATAGGGTCTTACACGAAATCAAATATCG
*
86021546 ATGCCACTGTCCCAGATAGGGTCTTACACGAAATCATATA-CG
1 ATGCCA-TGTCCCAGATAGGGTCTTACACGAAATCAAATATCG
*
86021588 ATGCTAATGTCCCA
1 ATGC-CATGTCCCA
86021602 AACATGGTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
42 18 0.39
43 28 0.61
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATGTCCCAGATAGGGTCTTACACGAAATCAAATATCG
Found at i:86025992 original size:132 final size:132
Alignment explanation
Indices: 86025737--86026067 Score: 395
Period size: 132 Copynumber: 2.5 Consensus size: 132
86025727 AAAAAACCGA
* * * * * ** *
86025737 AACCCAGCACAATAGGGCATGATTCCTCAAATTTCTAAACATTGAACATCGCCTT-ATTTT--AG
1 AACCCAGCACAATAGGGCACGATTCCGCGAATTGCCAAACATCAAACATCGCCTTCGTTTTAAAG
* * * * *
86025799 AA--TTTAGAGAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAATAGGAAATC
66 AATTTTTGGAAAACATGAGTGAAATTCTAAACGGACATTCGATTATTTTGAACAAAGAGGAAATC
86025862 GC
131 GC
* ** *
86025864 AACCCAGCACAATAGGGCACGATTCCTCGAATTGCCAAACATCAAACATTTCCTTTGTTTTAAAG
1 AACCCAGCACAATAGGGCACGATTCCGCGAATTGCCAAACATCAAACATCGCCTTCGTTTTAAAG
* * *
86025929 AGTTTTTGGAAAACATGATTGAAATTCTAAACGGACATTCGATTATTTTGAGCAAACGA-GAAAT
66 AATTTTTGGAAAACATGAGTGAAATTCTAAACGGACATTCGATTATTTTGAACAAA-GAGGAAAT
*
86025993 TGC
130 CGC
* * *
86025996 AACCCAGCACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAG
1 AACCCAGCACAATAGGGCACGATTCCGCGAATTGCCAAACATCAAACATCGCCTTCGTTTTAAAG
86026061 AATTTTT
66 AATTTTT
86026068 AAATGAATAA
Statistics
Matches: 172, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
127 47 0.27
128 4 0.02
130 3 0.02
132 117 0.68
133 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (132 bp):
AACCCAGCACAATAGGGCACGATTCCGCGAATTGCCAAACATCAAACATCGCCTTCGTTTTAAAG
AATTTTTGGAAAACATGAGTGAAATTCTAAACGGACATTCGATTATTTTGAACAAAGAGGAAATC
GC
Found at i:86027397 original size:44 final size:45
Alignment explanation
Indices: 86027349--86027439 Score: 175
Period size: 44 Copynumber: 2.0 Consensus size: 45
86027339 TTTAATAACG
86027349 TATGTAAGTTAAATATAAGTACTAA-ATATATGCTTAATGATACA
1 TATGTAAGTTAAATATAAGTACTAATATATATGCTTAATGATACA
86027393 TATGTAAGTTAAATATAAGTACTAATATATATGCTTAATGATACA
1 TATGTAAGTTAAATATAAGTACTAATATATATGCTTAATGATACA
86027438 TA
1 TA
86027440 AAATGACACA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 25 0.54
45 21 0.46
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (45 bp):
TATGTAAGTTAAATATAAGTACTAATATATATGCTTAATGATACA
Found at i:86029622 original size:133 final size:133
Alignment explanation
Indices: 86029405--86029649 Score: 346
Period size: 133 Copynumber: 1.8 Consensus size: 133
86029395 TCTATTCCAC
**
86029405 TACAACTTTAGGGAGATAGAATGGTGGCTTAAATCTACTTCACTGTAACTTTAGGAAGACAAGAT
1 TACAACTTTAGGGAGATAGAATGGTGGCTTAAATCTACTTCACTACAACTTTAGGAAGACAAGAT
* * * * *
86029470 TCGCCGTCTTCGATTTGCTCCACTACAACTCCAGGGAGACAAGATCTACAATTTTTAGCCTACTT
66 TCACCATCTCCGATCTGCTCCACTACAACTCCAAGGAGACAAGATCTACAATTTTTAGCCTACTT
86029535 CAA
131 CAA
* ** *
86029538 TACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGGTTCACTACAATTTTAGGAAGACAAGAT
1 TACAACTTTAGGGAGATAGAATGGTGGCTTAAATCTACTTCACTACAACTTTAGGAAGACAAGAT
* ** * *
86029603 TCACCATCTCCGATCTGCTCTACTGTAACTTCAAGGAGACAATATCT
66 TCACCATCTCCGATCTGCTCCACTACAACTCCAAGGAGACAAGATCT
86029650 GTAGAATTCA
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
133 96 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (133 bp):
TACAACTTTAGGGAGATAGAATGGTGGCTTAAATCTACTTCACTACAACTTTAGGAAGACAAGAT
TCACCATCTCCGATCTGCTCCACTACAACTCCAAGGAGACAAGATCTACAATTTTTAGCCTACTT
CAA
Found at i:86041407 original size:131 final size:132
Alignment explanation
Indices: 86041118--86041447 Score: 402
Period size: 131 Copynumber: 2.5 Consensus size: 132
86041108 AAAAAACTGA
* ** * * * *
86041118 AACCCAGCACAATAGGGCATGATTCCTCGAATTTCTAAACATCAAACATTGCCTT-ATTTT--AG
1 AACCCAGCACGATAGGGCACAATTCCGCGAATTGCCAAACATCAAACATCGCCTTCATTTTAAAG
* * * * * *
86041180 AA--TTTAGAGAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAATAGGAAATT
66 AATTTTTGGAAAACATGAATGAAATTCTAAAAGGACATTCGATTATTTTGAACAAAGAGGAAATT
86041243 AC
131 AC
* * * ** *
86041245 AACCCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACAATTCCGCGAATTGCCAAACATCAAACATCGCCTTCATTTTAAAG
* * *
86041310 AGTTTTTGGAAAACATGAATGAAATTCTAAAAGGACATTCGATTATTTTGAGCAACGA-GAAATT
66 AATTTTTGGAAAACATGAATGAAATTCTAAAAGGACATTCGATTATTTTGAACAAAGAGGAAATT
*
86041374 GC
131 AC
*
86041376 AACCCAGCACGATAGGGCACAATTCCGCGAATTGCCAAATATCAAACATCGCCTTCATTTTAAAG
1 AACCCAGCACGATAGGGCACAATTCCGCGAATTGCCAAACATCAAACATCGCCTTCATTTTAAAG
86041441 AATTTTT
66 AATTTTT
86041448 AAATGAATAA
Statistics
Matches: 173, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
127 49 0.28
128 4 0.02
130 3 0.02
131 71 0.41
132 46 0.27
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (132 bp):
AACCCAGCACGATAGGGCACAATTCCGCGAATTGCCAAACATCAAACATCGCCTTCATTTTAAAG
AATTTTTGGAAAACATGAATGAAATTCTAAAAGGACATTCGATTATTTTGAACAAAGAGGAAATT
AC
Found at i:86052867 original size:53 final size:55
Alignment explanation
Indices: 86052796--86052943 Score: 176
Period size: 55 Copynumber: 2.7 Consensus size: 55
86052786 AACTTACCAT
* * *
86052796 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT-ATG-AACTCATCAT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAAGTAAATCATCAA
* * * * *
86052849 TGTCATG-CATTGGCATGGTCTTACATGGGATCTTTGCCTTAAAGTAAATTATCAA
1 TGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTAAAGTAAATCATCAA
* *
86052904 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT
86052944 GTAAAACTTA
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 34 0.44
54 2 0.03
55 39 0.51
56 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.39
Consensus pattern (55 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAAGTAAATCATCAA
Found at i:86052974 original size:35 final size:35
Alignment explanation
Indices: 86052928--86052996 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
86052918 ATGGTCTTAC
86052928 ATGATTTCCTTGCCTTGTAAAACTTACCAATGTCT
1 ATGATTTCCTTGCCTTGTAAAACTTACCAATGTCT
86052963 ATGATTTCCTTGCCTTGTAAAACTTACCAATGTC
1 ATGATTTCCTTGCCTTGTAAAACTTACCAATGTC
86052997 ACGCTTTGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (35 bp):
ATGATTTCCTTGCCTTGTAAAACTTACCAATGTCT
Found at i:86057455 original size:23 final size:23
Alignment explanation
Indices: 86057368--86057455 Score: 60
Period size: 23 Copynumber: 4.0 Consensus size: 23
86057358 AACAGTTTTC
* *
86057368 ATATTAA-ATTAAATTAAATGCTT
1 ATATTAATATTAAATT-ATTGATT
* ** *
86057391 ATCTTAATATTATTTTATTTATT
1 ATATTAATATTAAATTATTGATT
*
86057414 A-ATTTAATATT-AA--AGTGATT
1 ATA-TTAATATTAAATTATTGATT
86057434 ATATTAATATTAAATTATTGAT
1 ATATTAATATTAAATTATTGAT
86057456 ATTTATCTTG
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
20 14 0.30
21 3 0.06
23 24 0.51
24 6 0.13
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (23 bp):
ATATTAATATTAAATTATTGATT
Found at i:86060915 original size:15 final size:16
Alignment explanation
Indices: 86060882--86060916 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
86060872 ATTAAGTCTA
86060882 TATAAAATATTAGATTT
1 TATAAAATATTA-ATTT
86060899 TATAAAATATT-ATTT
1 TATAAAATATTAATTT
86060914 TAT
1 TAT
86060917 TATAATATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
17 11 0.61
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TATAAAATATTAATTT
Found at i:86072275 original size:14 final size:14
Alignment explanation
Indices: 86072240--86072278 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
86072230 TTGTTTCACT
*
86072240 GAAAATGACTTCTA
1 GAAAATGATTTCTA
*
86072254 GAAAATGATTTCTG
1 GAAAATGATTTCTA
*
86072268 GAAGATGATTT
1 GAAAATGATTT
86072279 ACTTTTCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:86072765 original size:15 final size:15
Alignment explanation
Indices: 86072745--86072796 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
86072735 ACTACAAAAC
86072745 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
86072760 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
86072779 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
86072794 ATT
1 ATT
86072797 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:86072860 original size:16 final size:16
Alignment explanation
Indices: 86072829--86072865 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
86072819 ATGTGAATAA
86072829 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
86072845 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
86072861 TATTA
1 TATTA
86072866 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:86072898 original size:20 final size:22
Alignment explanation
Indices: 86072873--86072927 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
86072863 TTAAAATAAA
*
86072873 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
86072893 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* *
86072915 ATTATATTAATAA
1 ATTAAAATAATAA
86072928 TTCTTTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 13 0.43
21 2 0.07
22 15 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:86072917 original size:22 final size:20
Alignment explanation
Indices: 86072873--86072918 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
86072863 TTAAAATAAA
*
86072873 ATTAAAATATTAAATAATTT
1 ATTAAAATAATAAATAATTT
86072893 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAA-TA-ATTT
86072915 ATTA
1 ATTA
86072919 TATTAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAAAATAATAAATAATTT
Found at i:86073021 original size:5 final size:6
Alignment explanation
Indices: 86073005--86073029 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86072995 TAAATATTTT
86073005 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
86073030 TTATTATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:86073526 original size:43 final size:43
Alignment explanation
Indices: 86073467--86073617 Score: 173
Period size: 43 Copynumber: 3.5 Consensus size: 43
86073457 CATTAACGAG
*
86073467 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGT-ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
86073511 -TGTCATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 ATGT-ATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * *
86073555 ATG-ATTTCGTATAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 ATGTATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
86073596 ATGTGATAACATGTAAGACCAT
1 ATGT-ATTACATGTAAGACCAT
86073618 ATCTAGGATA
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 5 0.05
43 81 0.89
44 3 0.03
45 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:86078124 original size:14 final size:14
Alignment explanation
Indices: 86078105--86078142 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
86078095 ATGATTTCGT
86078105 GAAAATTTTCGTTC
1 GAAAATTTTCGTTC
*
86078119 GAAAATTTTCGTTT
1 GAAAATTTTCGTTC
86078133 GAAAATTTTC
1 GAAAATTTTC
86078143 ACGTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (14 bp):
GAAAATTTTCGTTC
Found at i:86079241 original size:42 final size:43
Alignment explanation
Indices: 86079181--86079265 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
86079171 TGACATTAGG
**
86079181 GTTATCGAGACTATGTGTAAGACCATATGTAGGATATGACATC
1 GTTATCGAGACTATGTGTAAGACCATATCCAGGATATGACATC
*
86079224 GTTAT-GAGAC-ATCGTGTAAGACCATATCCAGGATATGGCATC
1 GTTATCGAGACTAT-GTGTAAGACCATATCCAGGATATGACATC
86079266 AAAATGAGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 2 0.05
42 31 0.82
43 5 0.13
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (43 bp):
GTTATCGAGACTATGTGTAAGACCATATCCAGGATATGACATC
Found at i:86079273 original size:42 final size:42
Alignment explanation
Indices: 86079187--86079276 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
86079177 TAGGGTTATC
** ***
86079187 GAGACTATGTGTAAGACCATATGTAGGATATGACATCGTTAT
1 GAGACTATGTGTAAGACCATATCCAGGATATGACATCAAAAT
*
86079229 GAGAC-ATCGTGTAAGACCATATCCAGGATATGGCATCAAAAT
1 GAGACTAT-GTGTAAGACCATATCCAGGATATGACATCAAAAT
86079271 GAGACT
1 GAGACT
86079277 GGGCTATTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.05
42 38 0.95
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (42 bp):
GAGACTATGTGTAAGACCATATCCAGGATATGACATCAAAAT
Found at i:86080554 original size:48 final size:48
Alignment explanation
Indices: 86080502--86080678 Score: 155
Period size: 48 Copynumber: 3.7 Consensus size: 48
86080492 CCCGCACACT
* * *
86080502 AAGTGCCAATATCATGGCCTGAAGCCAACTCAATATATCTCGCACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAACTCGCACCCA
* * * * * *
86080550 AAGTGCTAATATCATGACCC-ATAGCCAAATTAGTGA-AGCTCGCACCCG
1 AAGTGCCAATATCATGGCCCGA-AGCCAAATCAAT-ATAACTCGCACCCA
* * **
86080598 AAGTGCCAATATCATGGCCCAAAGCCAAATCAA-AGTAAGTTTCA-CCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATA-TAACTCGCACCCA
* *
86080645 GAAGTGCCGATATCATGGCCCGAAGCCAAGTCAA
1 -AAGTGCCAATATCATGGCCCGAAGCCAAATCAA
86080679 AGTATTCACC
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 97 0.94
49 2 0.02
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAACTCGCACCCA
Found at i:86082200 original size:30 final size:31
Alignment explanation
Indices: 86082124--86082206 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
86082114 TCAGTCTCGA
86082124 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
86082154 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
86082185 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
86082207 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:86082454 original size:25 final size:25
Alignment explanation
Indices: 86082426--86082495 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
86082416 CTCTTTTAAT
*
86082426 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86082451 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
86082476 AACTGAGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86082496 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86083451 original size:27 final size:27
Alignment explanation
Indices: 86083421--86083554 Score: 119
Period size: 27 Copynumber: 4.9 Consensus size: 27
86083411 GTAAATGTAC
86083421 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
86083448 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
86083474 AGAAAGCCAAGGGTATTTCTGTAATTGTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * * *
86083504 AAATCAGGGGTATTTTAGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** *
86083531 AAATTGAGGGTATTTCGGTAATTT
1 AAACCAAGGGTATTTCAGTAATTT
86083555 CACAAACTAG
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.01
27 59 0.69
28 7 0.08
29 18 0.21
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:86083569 original size:27 final size:27
Alignment explanation
Indices: 86083509--86083607 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
86083499 TGTGTAAATC
* * *
86083509 AGGGGTATTTTAGTAATTTTATAAA-T
1 AGGGGTATTTTGGTAATTTCACAAACT
* *
86083535 TGAGGGTATTTCGGTAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTCACAAACT
* *
86083563 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAAACT
86083590 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
86083608 CTACCCTATA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.02
27 58 0.95
28 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTCACAAACT
Found at i:86083669 original size:27 final size:27
Alignment explanation
Indices: 86083639--86083730 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
86083629 ATAATTTCAC
* *
86083639 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86083666 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
86083693 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86083720 AATCGAGGGTA
1 AATCGAGGGTA
86083731 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:86094906 original size:21 final size:21
Alignment explanation
Indices: 86094861--86094967 Score: 110
Period size: 21 Copynumber: 5.1 Consensus size: 21
86094851 AAAGCTCGAA
* * *
86094861 AGCTGAACAGAAGCCCATAAA
1 AGCTGAACAGAAACTCATAAG
*
86094882 AGCTGAACAGAAACTCATTAG
1 AGCTGAACAGAAACTCATAAG
* *
86094903 AGCTTAACAGAAACTCAAAAG
1 AGCTGAACAGAAACTCATAAG
* *
86094924 AGTTGAAC-GAAAGCTCGTAAG
1 AGCTGAACAGAAA-CTCATAAG
86094945 AGCT-AAGCAGAAACTCATAAG
1 AGCTGAA-CAGAAACTCATAAG
86094966 AG
1 AG
86094968 TTTAACAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
20 6 0.09
21 60 0.86
22 4 0.06
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.15
Consensus pattern (21 bp):
AGCTGAACAGAAACTCATAAG
Found at i:86094987 original size:21 final size:21
Alignment explanation
Indices: 86094887--86094988 Score: 70
Period size: 21 Copynumber: 4.9 Consensus size: 21
86094877 ATAAAAGCTG
* *
86094887 AACAGAAACTC-ATTAGAGCTT
1 AACAGAAACTCGA-AAGAGTTT
* *
86094908 AACAGAAACTCAAAAGAGTTG
1 AACAGAAACTCGAAAGAGTTT
* *
86094929 AAC-GAAAGCTCGTAAGAG-CT
1 AACAGAAA-CTCGAAAGAGTTT
86094949 AAGCAGAAACTC-ATAAGAGTTT
1 AA-CAGAAACTCGA-AAGAGTTT
86094971 AACA-AAAGCTCGAAAGAG
1 AACAGAAA-CTCGAAAGAG
86094989 CTAAATAGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
20 9 0.14
21 46 0.72
22 9 0.14
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (21 bp):
AACAGAAACTCGAAAGAGTTT
Found at i:86094999 original size:42 final size:42
Alignment explanation
Indices: 86094847--86094999 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 42
86094837 CAGATACGCC
* * * *
86094847 AACAAAAGCTCG-AA-AGCTGAACAGAAGCCCATAAA-AGCTG
1 AACAAAAGCTCGAAAGAGCTAAACAGAAACTCA-AAAGAGTTG
* *
86094887 AACAGAAA-CTC-ATTAGAGCTTAACAGAAACTCAAAAGAGTTG
1 AACA-AAAGCTCGA-AAGAGCTAAACAGAAACTCAAAAGAGTTG
* * * * *
86094929 AACGAAAGCTCGTAAGAGCTAAGCAGAAACTCATAAGAGTTT
1 AACAAAAGCTCGAAAGAGCTAAACAGAAACTCAAAAGAGTTG
*
86094971 AACAAAAGCTCGAAAGAGCTAAATAGAAA
1 AACAAAAGCTCGAAAGAGCTAAACAGAAA
86095000 GTAAAACACG
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
40 7 0.08
41 10 0.11
42 73 0.81
ACGTcount: A:0.48, C:0.18, G:0.19, T:0.15
Consensus pattern (42 bp):
AACAAAAGCTCGAAAGAGCTAAACAGAAACTCAAAAGAGTTG
Found at i:86098062 original size:69 final size:67
Alignment explanation
Indices: 86097989--86098179 Score: 163
Period size: 69 Copynumber: 2.8 Consensus size: 67
86097979 AAAAAGCCAA
*
86097989 AGCCTCTAACACAGTTAATGAGAGAAAAACTCCTAATTGTTGTGCTAAGGCTCAAATGCAAAGAG
1 AGCCTCCAACACAGTTAATGAGAGAAAAACTCCTAATTGTTGTGCTAAGGCTCAAATG--AAGAG
*
86098054 TCGC
64 TCAC
* * * * * * * *
86098058 AGCCTCCAACACTGTTAGCT-AAAGCAAAGCTCCCAATTGTTGTGCTAAGACTCGCAAGTGAAGA
1 AGCCTCCAACACAGTTA-ATGAGAGAAAAACTCCTAATTGTTGTGCTAAGGCT--CAAATGAAGA
86098122 GTCAC
63 GTCAC
* * * * *
86098127 AACCTCCAACAAAGTT-A-GCGAGAACAAAGCTCCTAATTCTCGTGCTAAGGCTC
1 AGCCTCCAACACAGTTAATGAGAGAA-AAA-CTCCTAATTGTTGTGCTAAGGCTC
86098180 GCAGGCAAAA
Statistics
Matches: 94, Mismatches: 22, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
67 4 0.04
68 2 0.02
69 82 0.87
70 1 0.01
71 5 0.05
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (67 bp):
AGCCTCCAACACAGTTAATGAGAGAAAAACTCCTAATTGTTGTGCTAAGGCTCAAATGAAGAGTC
AC
Found at i:86098181 original size:69 final size:70
Alignment explanation
Indices: 86098010--86098182 Score: 196
Period size: 69 Copynumber: 2.5 Consensus size: 70
86098000 CAGTTAATGA
* * **
86098010 GAGAA-AAA-CTCCTAATTGTTGTGCTAAGGCT--CAAATGCAAAGAGTCGCAGCCTCCAACACT
1 GAGAACAAAGCTCCTAATTGTTGTGCTAAGGCTCGCAAATG-AAAGAGTCACAACCTCCAACAAA
86098071 GTTAGC
65 GTTAGC
* * * *
86098077 TA-AAGCAAAGCTCCCAATTGTTGTGCTAAGACTCGCAAGTG-AAGAGTCACAACCTCCAACAAA
1 GAGAA-CAAAGCTCCTAATTGTTGTGCTAAGGCTCGCAAATGAAAGAGTCACAACCTCCAACAAA
86098140 GTTAGC
65 GTTAGC
* *
86098146 GAGAACAAAGCTCCTAATTCTCGTGCTAAGGCTCGCA
1 GAGAACAAAGCTCCTAATTGTTGTGCTAAGGCTCGCA
86098183 GGCAAAAAGC
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
66 2 0.02
67 1 0.01
68 3 0.03
69 74 0.85
70 2 0.02
71 5 0.06
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (70 bp):
GAGAACAAAGCTCCTAATTGTTGTGCTAAGGCTCGCAAATGAAAGAGTCACAACCTCCAACAAAG
TTAGC
Found at i:86098408 original size:69 final size:69
Alignment explanation
Indices: 86098243--86098420 Score: 184
Period size: 69 Copynumber: 2.6 Consensus size: 69
86098233 CGAGCTGGAG
* * * * *
86098243 CCTCTAACATAGTTAGT-AAGAGCAAAGCTCCGAGCTATCATGCTAAGGCCCGTAGGCGAAAAGC
1 CCTCCAACATAGTTA-TAAAGAACAAAGCTCCCAGCTATCATACTAAGGCCCGCAGGCGAAAAGC
*
86098307 CATAA
65 CACAA
* * * *
86098312 CCTTCAACATAGTTA-ACAAGAGA-AAAGCTCCCAACTATCATACTGA-GCCTCGCAGGCGAAAT
1 CCTCCAACATAGTTATA-AAGA-ACAAAGCTCCCAGCTATCATACTAAGGCC-CGCAGGCGAAAA
86098374 GCCACAA
63 GCCACAA
* *
86098381 CCTCCAACATAGTCATAAAGAACAAAGCTCCTAGCTATCA
1 CCTCCAACATAGTTATAAAGAACAAAGCTCCCAGCTATCA
86098421 CATTGAAGCT
Statistics
Matches: 89, Mismatches: 14, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
68 4 0.04
69 84 0.94
70 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.17, T:0.19
Consensus pattern (69 bp):
CCTCCAACATAGTTATAAAGAACAAAGCTCCCAGCTATCATACTAAGGCCCGCAGGCGAAAAGCC
ACAA
Found at i:86098728 original size:35 final size:35
Alignment explanation
Indices: 86098653--86098724 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 35
86098643 AATTATGTGA
86098653 CAAGTATAACAAGCTCGTAAAAAAATAGATTTTCT
1 CAAGTATAACAAGCTCGTAAAAAAATAGATTTTCT
* *
86098688 CAAGTATAACAAGCTTG-CAAAAAATAGATTTTCT
1 CAAGTATAACAAGCTCGTAAAAAAATAGATTTTCT
86098722 CAA
1 CAA
86098725 AGTAAACTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 19 0.54
35 16 0.46
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (35 bp):
CAAGTATAACAAGCTCGTAAAAAAATAGATTTTCT
Found at i:86104007 original size:15 final size:15
Alignment explanation
Indices: 86103987--86104069 Score: 76
Period size: 15 Copynumber: 5.5 Consensus size: 15
86103977 GATAATCAGA
*
86103987 AAATCCAAGATAGAG
1 AAATCCAAGATAAAG
* ***
86104002 AAATCCGAGACGGAG
1 AAATCCAAGATAAAG
** *
86104017 AAGCCCAAAATAAAG
1 AAATCCAAGATAAAG
86104032 AAATCCAAGATAAAG
1 AAATCCAAGATAAAG
* *
86104047 AAATCCATGATAAGG
1 AAATCCAAGATAAAG
86104062 AAATCCAA
1 AAATCCAA
86104070 ATTATAATAC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 52 1.00
ACGTcount: A:0.53, C:0.17, G:0.18, T:0.12
Consensus pattern (15 bp):
AAATCCAAGATAAAG
Found at i:86104216 original size:2 final size:2
Alignment explanation
Indices: 86104209--86104243 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
86104199 TATGCTTCTC
86104209 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86104244 AAAGTCAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:86104401 original size:26 final size:26
Alignment explanation
Indices: 86104370--86104422 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
86104360 ATCCATTTAG
86104370 ACTGACAACACATTCGTCTAACATTA
1 ACTGACAACACATTCGTCTAACATTA
*
86104396 ACTGACAACACATTTGTCTAACATTA
1 ACTGACAACACATTCGTCTAACATTA
86104422 A
1 A
86104423 GATCATGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.28
Consensus pattern (26 bp):
ACTGACAACACATTCGTCTAACATTA
Found at i:86108452 original size:30 final size:30
Alignment explanation
Indices: 86108408--86108464 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86108398 CAAAAATCAT
*
86108408 ATTTTTACAAATTTTCA-TTTTGACCCCTCA
1 ATTTTCACAAATTTTCACTTTT-ACCCCTCA
*
86108438 ATTTTCACATATTTTCACTTTTACCCC
1 ATTTTCACAAATTTTCACTTTTACCCC
86108465 AATTCTCGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.25, C:0.26, G:0.02, T:0.47
Consensus pattern (30 bp):
ATTTTCACAAATTTTCACTTTTACCCCTCA
Found at i:86111075 original size:2 final size:2
Alignment explanation
Indices: 86111068--86111106 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
86111058 AGCAATTCAT
86111068 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86111107 GTTTCATGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:86112811 original size:28 final size:28
Alignment explanation
Indices: 86112771--86112849 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
86112761 GCAATCAAAT
* * *
86112771 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
86112799 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
86112827 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
86112850 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:86114855 original size:28 final size:28
Alignment explanation
Indices: 86114824--86114976 Score: 157
Period size: 28 Copynumber: 5.5 Consensus size: 28
86114814 GTGAACATAG
*
86114824 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
86114852 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
86114880 GGCACTGTGTGTGCGAGTT-CGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* ****
86114908 GCACTGTGTGTGCGAGAT-CGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
86114935 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
86114964 GCACTGTGTGTGC
1 GCACTGTGTGTGC
86114977 AAGATCGGTT
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
27 22 0.22
28 55 0.56
29 21 0.21
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:86114891 original size:29 final size:28
Alignment explanation
Indices: 86114852--86114951 Score: 139
Period size: 27 Copynumber: 3.6 Consensus size: 28
86114842 CCGTAACCGA
86114852 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATC-GTTGTTGAG
* ****
86114881 GCACTGTGTGTGCGAGTTCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGTTGTTGAG
86114908 GCACTGTGTGTGCGAGATCGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGTTGTTGAG
86114936 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
86114952 TTCCGTAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 22 0.37
28 20 0.33
29 18 0.30
ACGTcount: A:0.15, C:0.17, G:0.39, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGATCGTTGTTGAG
Found at i:86114918 original size:56 final size:57
Alignment explanation
Indices: 86114822--86115006 Score: 302
Period size: 56 Copynumber: 3.2 Consensus size: 57
86114812 AAGTGAACAT
*
86114822 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
86114879 AGGCACTGTGTGTGCGAGTT-CGTAACCGAGCACTGTGTGTGCGAGATC-GTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
86114934 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
86114991 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
86115007 AAATGAGATC
Statistics
Matches: 120, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
55 27 0.22
56 54 0.45
57 32 0.27
59 7 0.06
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:86119975 original size:28 final size:28
Alignment explanation
Indices: 86119935--86120013 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
86119925 GCAATCAAAT
* * *
86119935 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
86119963 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
86119991 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
86120014 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:86124428 original size:46 final size:46
Alignment explanation
Indices: 86124375--86124547 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
86124365 TGGTTGAGCA
86124375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
86124421 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
86124466 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
86124514 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86124548 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:86124531 original size:93 final size:93
Alignment explanation
Indices: 86124372--86124542 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
86124362 GGATGGTTGA
* *
86124372 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
86124437 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
86124465 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
86124530 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
86124543 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86125642 original size:13 final size:13
Alignment explanation
Indices: 86125624--86125648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86125614 AATTGGCCCA
86125624 ATAAAAAAATTAT
1 ATAAAAAAATTAT
86125637 ATAAAAAAATTA
1 ATAAAAAAATTA
86125649 GTAAATAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
ATAAAAAAATTAT
Found at i:86131705 original size:2 final size:2
Alignment explanation
Indices: 86131698--86131728 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86131688 AGCAATTCTT
86131698 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86131729 TTTCATGTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86132943 original size:16 final size:17
Alignment explanation
Indices: 86132890--86132943 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
86132880 ATTAATATAT
* *
86132890 TATAATTATATAATTTA
1 TATAATTATTTACTTTA
* *
86132907 -AT-ATAATTTACTTTT
1 TATAATTATTTACTTTA
86132922 TATAATTATTTAC-TTA
1 TATAATTATTTACTTTA
86132938 TATAAT
1 TATAAT
86132944 AAGTAAATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 9 0.31
16 12 0.41
17 8 0.28
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (17 bp):
TATAATTATTTACTTTA
Found at i:86144874 original size:40 final size:40
Alignment explanation
Indices: 86144829--86144995 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86144819 CGGAATATAA
86144829 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
86144869 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86144909 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86144949 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86144988 CCGGATAT
1 CCGGATAT
86144996 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86144979 original size:80 final size:79
Alignment explanation
Indices: 86144829--86144995 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
86144819 CGGAATATAA
* *
86144829 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
86144894 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
86144909 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
86144971 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
86144988 CCGGATAT
1 CCGGATAT
86144996 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:86145843 original size:17 final size:19
Alignment explanation
Indices: 86145820--86145865 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
86145810 AAGAAGCATG
86145820 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
86145838 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
86145856 AATCATGCTC
1 AATCATGCTC
86145866 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:86152872 original size:40 final size:40
Alignment explanation
Indices: 86152827--86152993 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86152817 CGGAATATAA
86152827 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
86152867 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86152907 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86152947 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86152986 CCGGATAT
1 CCGGATAT
86152994 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86152977 original size:80 final size:79
Alignment explanation
Indices: 86152827--86152993 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
86152817 CGGAATATAA
* *
86152827 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
86152892 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
86152907 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
86152969 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
86152986 CCGGATAT
1 CCGGATAT
86152994 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:86153841 original size:17 final size:19
Alignment explanation
Indices: 86153818--86153863 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
86153808 AAGAAGCATG
86153818 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
86153836 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
86153854 AATCATGCTC
1 AATCATGCTC
86153864 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:86165498 original size:26 final size:25
Alignment explanation
Indices: 86165468--86165516 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
86165458 AAGAATTTAA
*
86165468 AATTTTATTTTTAAATTTTTAAGAAT
1 AATTTTATCTTT-AATTTTTAAGAAT
*
86165494 AATTTTATCTTTATTTTTTAAGA
1 AATTTTATCTTTAATTTTTAAGA
86165517 GTACTAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (25 bp):
AATTTTATCTTTAATTTTTAAGAAT
Found at i:86172249 original size:25 final size:22
Alignment explanation
Indices: 86172221--86172281 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
86172211 TATAATAGTG
86172221 AAACAATAACAAGAACATAGCAACA
1 AAACAATAA-AA-AA-ATAGCAACA
* *
86172246 AAACAGTAAAAAAATGGCAACA
1 AAACAATAAAAAAATAGCAACA
* *
86172268 AAATAGTAAAAAAA
1 AAACAATAAAAAAA
86172282 GTAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.64
23 2 0.06
24 2 0.06
25 8 0.24
ACGTcount: A:0.67, C:0.13, G:0.10, T:0.10
Consensus pattern (22 bp):
AAACAATAAAAAAATAGCAACA
Found at i:86172266 original size:22 final size:22
Alignment explanation
Indices: 86172240--86172281 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
86172230 CAAGAACATA
86172240 GCAACAAAACAGTAAAAAAATG
1 GCAACAAAACAGTAAAAAAATG
*
86172262 GCAACAAAATAGTAAAAAAA
1 GCAACAAAACAGTAAAAAAA
86172282 GTAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.12, G:0.12, T:0.10
Consensus pattern (22 bp):
GCAACAAAACAGTAAAAAAATG
Found at i:86174018 original size:7 final size:7
Alignment explanation
Indices: 86174008--86174054 Score: 60
Period size: 7 Copynumber: 6.6 Consensus size: 7
86173998 TACATAAAAT
86174008 TATTAAA
1 TATTAAA
86174015 TATTAAA
1 TATTAAA
86174022 TATTAAA
1 TATTAAA
86174029 TATTAAAA
1 TATT-AAA
*
86174037 TAATATAA
1 TATTA-AA
86174045 TA-TAAA
1 TATTAAA
86174051 TATT
1 TATT
86174055 TTAAAAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
6 4 0.11
7 22 0.61
8 10 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATTAAA
Found at i:86174037 original size:22 final size:21
Alignment explanation
Indices: 86174008--86174054 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
86173998 TACATAAAAT
* *
86174008 TATTAAATATTAAATAT-TAAA
1 TATTAAATAATATA-ATATAAA
86174029 TATTAAAATAATATAATATAAA
1 TATT-AAATAATATAATATAAA
86174051 TATT
1 TATT
86174055 TTAAAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTAAATAATATAATATAAA
Found at i:86175143 original size:10 final size:10
Alignment explanation
Indices: 86175128--86175172 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
86175118 AATTTTAGCT
86175128 TTTATCTTTA
1 TTTATCTTTA
86175138 TTTATCTTTA
1 TTTATCTTTA
*
86175148 ATTATCTTTA
1 TTTATCTTTA
86175158 TTTAT-TTGTA
1 TTTATCTT-TA
86175168 TTTAT
1 TTTAT
86175173 TTTCTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 2 0.06
10 30 0.94
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:86179477 original size:42 final size:43
Alignment explanation
Indices: 86179417--86179527 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
86179407 AATTTATGTG
* * * * *
86179417 TAAGACCATGTCTCGGACATCGGCATCG-TATCTG-TTTTCGTA
1 TAAGACCCTGTCTGGGACATCGGCATCGATA-CTGAATTACATA
** *
86179459 TAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACATA
86179502 TAAGACCAC-GTCTGGGACATCGGCAT
1 TAAGACC-CTGTCTGGGACATCGGCAT
86179528 TGTACTTGTC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.48
43 28 0.50
44 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACATA
Found at i:86179527 original size:43 final size:42
Alignment explanation
Indices: 86179415--86179527 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
86179405 GAAATTTATG
* * * * *
86179415 TGTAAGACCATGTCTCGGACATCGGCATCGTATCTGTTTTCG
1 TGTAAGACCACGTCTGGGACATCGGCATCGTATCTGATTACA
* **
86179457 TATAAGACC-CTGTCTGGGACAGAGGCATCG-ATACTGAATTACA
1 TGTAAGACCAC-GTCTGGGACATCGGCATCGTAT-CTG-ATTACA
86179500 TGTAAGACCACGTCTGGGACATCGGCAT
1 TGTAAGACCACGTCTGGGACATCGGCAT
86179528 TGTACTTGTC
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.04
42 27 0.48
43 26 0.46
44 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATCGGCATCGTATCTGATTACA
Found at i:86186674 original size:85 final size:86
Alignment explanation
Indices: 86186518--86186676 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 86
86186508 AATTATCATG
* *
86186518 TAAGACCGTGTCTGGGACACAAGCATCGATTTGAAATTTAAGAGTAAGACCATGTCTCGGACATC
1 TAAGACCCTGTCTGGGACACAAGCATCGATCTGAAATTTAAGAGTAAGACCATGTCTCGGACATC
*
86186583 GGCATTGTATCTGTTTTCGTA
66 GACATTGTATCTGTTTTCGTA
* * * *
86186604 TAAGACCCTGTCTGGGACAGAGGCATCGATACTG-AA-TTACA-TGTAAGACCATGTCTGGGACA
1 TAAGACCCTGTCTGGGACACAAGCATCGAT-CTGAAATTTA-AGAGTAAGACCATGTCTCGGACA
86186666 TCGACATTGTA
64 TCGACATTGTA
86186677 CTTGTCTGTG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 32 0.50
86 30 0.47
87 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (86 bp):
TAAGACCCTGTCTGGGACACAAGCATCGATCTGAAATTTAAGAGTAAGACCATGTCTCGGACATC
GACATTGTATCTGTTTTCGTA
Found at i:86191750 original size:23 final size:23
Alignment explanation
Indices: 86191677--86191750 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
86191667 GAATGGCAAA
86191677 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
86191700 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
86191724 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
86191747 TGTG
1 TGTG
86191751 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:86191823 original size:22 final size:22
Alignment explanation
Indices: 86191796--86191917 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
86191786 CATGTATATC
86191796 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
86191818 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
86191841 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
*** * *
86191865 TGTGATGAA-TATGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
86191890 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
86191912 TGTGAT
1 TGTGAT
86191918 GAATGTGAAC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 26 0.36
23 13 0.18
24 13 0.18
25 20 0.28
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:86192105 original size:22 final size:22
Alignment explanation
Indices: 86192030--86192105 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
86192020 ACGTGCATAT
*
86192030 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
86192052 ATGTGATTAATGTG-A-ACAT-GCATA
1 ATGTGA-TAA-G-GCAGA-ATGGC-CA
86192076 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
86192099 ATGTGAT
1 ATGTGAT
86192106 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 10 0.24
25 7 0.17
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:86192142 original size:47 final size:47
Alignment explanation
Indices: 86191660--86192108 Score: 691
Period size: 47 Copynumber: 9.6 Consensus size: 47
86191650 ATACATGAGC
* * * *
86191660 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
86191707 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
86191754 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATCTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
86191801 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
86191848 TAAGGCCGAATGGCCAATGTGATGAATATGAATATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
86191895 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
86191942 TAAGGTCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
86191989 TAAGGCCGAATGGGCAATGTGAAGAATATGAACGTGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
86192036 TAAGGCCGAATGGCCAATGTGATTAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
86192083 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
86192109 CGTGGATGTG
Statistics
Matches: 372, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 372 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:86192175 original size:46 final size:46
Alignment explanation
Indices: 86192122--86192212 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
86192112 GGATGTGTAT
* * *
86192122 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATAAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
* * * *
86192168 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATG
86192213 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
Found at i:86194265 original size:10 final size:10
Alignment explanation
Indices: 86194250--86194311 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
86194240 CAACCCAATT
86194250 TTTATTTTTA
1 TTTATTTTTA
*
86194260 TTTATTTTTC
1 TTTATTTTTA
*
86194270 TTAATTTTTA
1 TTTATTTTTA
86194280 TTT-TATTTTA
1 TTTAT-TTTTA
*
86194290 -TT-TTATTA
1 TTTATTTTTA
86194298 TTTATTATTTA
1 TTTATT-TTTA
86194309 TTT
1 TTT
86194312 TTGGATATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
8 4 0.10
9 6 0.14
10 26 0.62
11 6 0.14
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:86194278 original size:20 final size:21
Alignment explanation
Indices: 86194252--86194313 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 21
86194242 ACCCAATTTT
86194252 TATTTTTATTTATTTTTCTTA
1 TATTTTTATTTATTTTTCTTA
*
86194273 -ATTTTTATTTTATTTTATTTTA
1 TATTTTTA-TTTATTTT-TCTTA
86194295 TTATTTATTATTTATTTTT
1 -TATTT-TTATTTATTTTT
86194314 GGATATTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 7 0.20
21 8 0.23
22 4 0.11
23 1 0.03
24 12 0.34
25 3 0.09
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (21 bp):
TATTTTTATTTATTTTTCTTA
Found at i:86194305 original size:25 final size:26
Alignment explanation
Indices: 86194246--86194312 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
86194236 GAGGCAACCC
*
86194246 AATTTTTATTTT-TATTTATTTTTCTT
1 AATTTTTATTTTAT-TTTATTTTTATT
86194272 AATTTTTATTTTATTTTA-TTTTATT
1 AATTTTTATTTTATTTTATTTTTATT
86194297 -ATTTATTA-TTTATTTT
1 AATTT-TTATTTTATTTT
86194313 TGGATATTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
24 12 0.32
25 9 0.24
26 16 0.42
27 1 0.03
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.76
Consensus pattern (26 bp):
AATTTTTATTTTATTTTATTTTTATT
Found at i:86194650 original size:16 final size:16
Alignment explanation
Indices: 86194629--86194661 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86194619 GTCAACACAC
86194629 ACCGGTGCCATTTTTT
1 ACCGGTGCCATTTTTT
86194645 ACCGGTGCCATTTTTT
1 ACCGGTGCCATTTTTT
86194661 A
1 A
86194662 GCACCCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.42
Consensus pattern (16 bp):
ACCGGTGCCATTTTTT
Found at i:86197080 original size:98 final size:98
Alignment explanation
Indices: 86196885--86197080 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 98
86196875 TAAATTATTT
*
86196885 TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATCTCTCTTTCCGTCAAAA
1 TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATATCTCTTTCCGTCAAAA
* *
86196950 GGCTCAATGTGTTCTTAAGAAAAATATAATAAA
66 AGCTCAATGTATTCTTAAGAAAAATATAATAAA
* * *
86196983 TTAGGAGTATGTTGGGCT-AGGTAACCGGAGTGGAGTGCTTGGCTTTCATATCTC-TTCGTGTCA
1 TTAGGAATATGTTGGGCTGA-GTAACCGGAGTGG-GTGCTTGGCTGTCATATCTCTTTC-CGTCA
** * *
86197046 AAAATTTCAATGTATTCTTAAGCAATA-ATAATAAA
63 AAAAGCTCAATGTATTCTTAAGAAAAATATAATAAA
86197081 GAAAAAAAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
97 1 0.01
98 41 0.48
99 43 0.51
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (98 bp):
TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATATCTCTTTCCGTCAAAA
AGCTCAATGTATTCTTAAGAAAAATATAATAAA
Found at i:86197752 original size:22 final size:22
Alignment explanation
Indices: 86197724--86197766 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
86197714 GATTTAATTT
* *
86197724 TAGCTTTTCTCTTTATTTATCC
1 TAGCTTTTATCTTTAATTATCC
86197746 TAGCTTTTATCTTTAATTATC
1 TAGCTTTTATCTTTAATTATC
86197767 TTTATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.05, T:0.58
Consensus pattern (22 bp):
TAGCTTTTATCTTTAATTATCC
Found at i:86197767 original size:10 final size:10
Alignment explanation
Indices: 86197751--86197789 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
86197741 TATCCTAGCT
86197751 TTTATCTTTA
1 TTTATCTTTA
*
86197761 ATTATCTTTA
1 TTTATCTTTA
86197771 TTTAT-TTATA
1 TTTATCTT-TA
86197781 TTTATCTTT
1 TTTATCTTT
86197790 TAGAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:86210080 original size:13 final size:13
Alignment explanation
Indices: 86210062--86210086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86210052 GAGTAATTAA
86210062 CATACATCCATAG
1 CATACATCCATAG
86210075 CATACATCCATA
1 CATACATCCATA
86210087 CTTAAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.24
Consensus pattern (13 bp):
CATACATCCATAG
Found at i:86224073 original size:110 final size:111
Alignment explanation
Indices: 86223875--86224106 Score: 394
Period size: 110 Copynumber: 2.1 Consensus size: 111
86223865 CAAAGTTGAG
*
86223875 ACACACGGCCGTATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTACAAAATTTAGGTGC
1 ACACACGGCCG-ATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGC
* * *
86223940 ATGGGATACACGGCCGTACCACACGCCCGTGGGGCTGACCGTGTGTC
65 ATGGGACACACGGCAGTACCACACGCCCGTGGGGCTAACCGTGTGTC
*
86223987 ACACACGGCCG-TGTCTACCGATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGCA
1 ACACACGGCCGATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGCA
*
86224051 TGGGACACACGGCAGTAGCACACGCCCGTGGGGCTAACCGTGTGTC
66 TGGGACACACGGCAGTACCACACGCCCGTGGGGCTAACCGTGTGTC
86224097 ACACACGGCC
1 ACACACGGCC
86224107 TAGACACAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
110 103 0.90
112 11 0.10
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (111 bp):
ACACACGGCCGATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGCA
TGGGACACACGGCAGTACCACACGCCCGTGGGGCTAACCGTGTGTC
Found at i:86237124 original size:13 final size:13
Alignment explanation
Indices: 86237106--86237135 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
86237096 CAAGATAATT
86237106 AATTCAATTTCTC
1 AATTCAATTTCTC
*
86237119 AATTCAATTTCTG
1 AATTCAATTTCTC
86237132 AATT
1 AATT
86237136 ACTTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (13 bp):
AATTCAATTTCTC
Found at i:86243411 original size:43 final size:43
Alignment explanation
Indices: 86243350--86243435 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
86243340 TGGATTGAGT
86243350 ATGAATTGTCAAAATCATTGTTTAAATGGTTAAATCTATTCAG
1 ATGAATTGTCAAAATCATTGTTTAAATGGTTAAATCTATTCAG
86243393 ATGAATTGTCAAAATCATTGTTTAAATGGTTAAATCTATTCAG
1 ATGAATTGTCAAAATCATTGTTTAAATGGTTAAATCTATTCAG
86243436 CTTTACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (43 bp):
ATGAATTGTCAAAATCATTGTTTAAATGGTTAAATCTATTCAG
Found at i:86249031 original size:13 final size:13
Alignment explanation
Indices: 86249013--86249038 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86249003 TCTATTGCTG
86249013 TAAAAATAAAAAA
1 TAAAAATAAAAAA
86249026 TAAAAATAAAAAA
1 TAAAAATAAAAAA
86249039 ATAGAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:86249820 original size:29 final size:30
Alignment explanation
Indices: 86249760--86249820 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
86249750 TTAATCTCAT
* * *
86249760 TTTTTATTTTATAATATGATATTTTTTTTA
1 TTTTTATTTTATAATATGATATTATGTATA
86249790 TTTTTATTTTATGAAT-T-ATATTATGTATA
1 TTTTTATTTTAT-AATATGATATTATGTATA
86249819 TT
1 TT
86249821 ATATGAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 11 0.41
30 13 0.48
31 3 0.11
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (30 bp):
TTTTTATTTTATAATATGATATTATGTATA
Found at i:86249859 original size:27 final size:29
Alignment explanation
Indices: 86249806--86249861 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
86249796 TTTTATGAAT
* *
86249806 TATATTATGTATATTATATGAAAATTAAA
1 TATATTATATATATAATATGAAAATTAAA
*
86249835 TATATTATATA-ATAATAT-AATATTAAA
1 TATATTATATATATAATATGAAAATTAAA
86249862 AGATATGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.33
28 6 0.25
29 10 0.42
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (29 bp):
TATATTATATATATAATATGAAAATTAAA
Found at i:86250129 original size:16 final size:16
Alignment explanation
Indices: 86250105--86250156 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
86250095 TAGTTCACTA
86250105 TAATGGAATAAGGCTG
1 TAATGGAATAAGGCTG
* * *
86250121 TAATTGAATAAAGTTG
1 TAATGGAATAAGGCTG
86250137 TAATGGAAT-AGAGCTG
1 TAATGGAATAAG-GCTG
86250153 TAAT
1 TAAT
86250157 CAATAATTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31
Consensus pattern (16 bp):
TAATGGAATAAGGCTG
Found at i:86250482 original size:58 final size:57
Alignment explanation
Indices: 86250373--86250485 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 57
86250363 ATAAAAATAA
* * *
86250373 ATAATTTAATCATATTTTAACATAATTATTATTAAATATAATTTAATAAAATCATTT
1 ATAATTTAATAACATTTTAACAAAATTATTATTAAATATAATTTAATAAAATCATTT
*
86250430 ATAATTTAATAACATTCTTAATAAAATTATTATTAAAATATGAA-TTAA-AAAATCAT
1 ATAATTTAATAACATT-TTAACAAAATTATTATT-AAATAT-AATTTAATAAAATCAT
86250486 AATATATAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
57 14 0.29
58 23 0.47
59 10 0.20
60 2 0.04
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (57 bp):
ATAATTTAATAACATTTTAACAAAATTATTATTAAATATAATTTAATAAAATCATTT
Found at i:86253139 original size:15 final size:17
Alignment explanation
Indices: 86253121--86253152 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
86253111 TAGCATAATT
86253121 TACCAAA-TCA-ATTCA
1 TACCAAACTCAGATTCA
86253136 TACCAAACTCAGATTCA
1 TACCAAACTCAGATTCA
86253153 CAAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.28, G:0.03, T:0.25
Consensus pattern (17 bp):
TACCAAACTCAGATTCA
Found at i:86260456 original size:49 final size:49
Alignment explanation
Indices: 86260330--86260458 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
86260320 ATCAAAATCT
* * * *
86260330 ATGCCATGTTCCAGATAGGTCTTACACTAACTTTCATATATCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCG
* * * *
86260379 ATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GCCG
*
86260428 ATGTCATGTCCCAGACAGGTCTTACACTGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC
86260459 ACACAACAAG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCG
Found at i:86267160 original size:138 final size:139
Alignment explanation
Indices: 86266910--86267190 Score: 465
Period size: 138 Copynumber: 2.0 Consensus size: 139
86266900 CAAAATGGCT
*
86266910 AATAGTTCAATTTAGTCCACAACCTTGTTTTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCTTG
1 AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCTTG
* * *
86266975 ACCTATAGTATCAAATTTAACTCATTCAATCGTCACATTATTCAATTTAACCCC-AAAAAACACT
66 ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
*
86267039 TGATTGCAA
131 TGAGTGCAA
* * *
86267048 AATAGTTCGATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAGAACCTCTTCTTTCTTG
1 AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCTTG
*
86267113 ACCTATAGCATCAAATTTAACTCATTTAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
66 ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
*
86267178 TTAGTGCAA
131 TGAGTGCAA
86267187 AATA
1 AATA
86267191 CATTTTGCCC
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
138 111 0.84
139 21 0.16
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (139 bp):
AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCTTG
ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
TGAGTGCAA
Found at i:86270349 original size:19 final size:20
Alignment explanation
Indices: 86270325--86270362 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86270315 GGTACCACCA
86270325 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
86270344 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
86270363 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:86270751 original size:93 final size:93
Alignment explanation
Indices: 86270592--86270762 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86270582 GCCCCTAAGT
* *
86270592 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCACATCCATAAATGAACTCGGACTCAACTCAA
86270657 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
86270685 GAACTCGGACTCAACTCAATGAGTTCGGGCATTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCACATCCATAAATGAACTCGGACTCAACTCAA
86270750 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86270763 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86270757 original size:46 final size:46
Alignment explanation
Indices: 86270591--86270758 Score: 200
Period size: 46 Copynumber: 3.6 Consensus size: 46
86270581 CGCCCCTAAG
* * * *
86270591 TGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCATAAA
*
86270637 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACATCCATAAA
* *
86270684 CGAACTCGGACTCAACTCAATGAGTTCGGGCATTCACATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCATAAA
86270730 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
86270759 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 55 0.53
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCATAAA
Found at i:86274110 original size:40 final size:40
Alignment explanation
Indices: 86274055--86274222 Score: 239
Period size: 40 Copynumber: 4.1 Consensus size: 40
86274045 TATTCGGATG
*
86274055 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
86274095 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AG-TGACT
* *
86274138 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
** *
86274178 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
86274218 ATATC
1 ATATC
86274223 TGGCTAAATC
Statistics
Matches: 117, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
39 2 0.02
40 78 0.67
41 1 0.01
43 35 0.30
44 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
Found at i:86282068 original size:40 final size:40
Alignment explanation
Indices: 86282005--86282228 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
86281995 TATTCGGATG
* *
86282005 ATATCCGGGCTAAATCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86282045 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
86282088 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
86282128 GTATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
86282168 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
86282208 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86282229 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 12 0.08
40 110 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:86282148 original size:83 final size:80
Alignment explanation
Indices: 86282009--86282228 Score: 273
Period size: 83 Copynumber: 2.7 Consensus size: 80
86281999 CGGATGATAT
* * * **
86282009 CCGGGCTAAATCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
86282074 TGCGAGTAGTTGCTATAC
66 TGC---TAGTTACTATAC
* *
86282092 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGTATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
86282157 TGCTAGTTACTATAT
66 TGCTAGTTACTATAC
* * * *
86282172 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCTCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
86282229 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.11
80 46 0.38
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTTACTATAC
Found at i:86288757 original size:19 final size:20
Alignment explanation
Indices: 86288733--86288770 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86288723 GGTACCACCA
86288733 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
86288752 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
86288771 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:86289576 original size:30 final size:30
Alignment explanation
Indices: 86289542--86289601 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
86289532 ATTTAATACG
86289542 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
86289572 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
86289602 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:86304395 original size:26 final size:26
Alignment explanation
Indices: 86304359--86304411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
86304349 GTTAAAAGTA
86304359 GAGCACGGTTTTCCAAAATGATATTT
1 GAGCACGGTTTTCCAAAATGATATTT
*
86304385 GAGCGCGGTTTTCCAAAATGATATTT
1 GAGCACGGTTTTCCAAAATGATATTT
86304411 G
1 G
86304412 TTTTCAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
GAGCACGGTTTTCCAAAATGATATTT
Found at i:86316172 original size:18 final size:19
Alignment explanation
Indices: 86316141--86316176 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
86316131 TTTCATTAGG
86316141 TTAATTTAGGTTAATTAAT
1 TTAATTTAGGTTAATTAAT
*
86316160 TTAA-TTAGTTTAATTAA
1 TTAATTTAGGTTAATTAA
86316177 AATATTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
TTAATTTAGGTTAATTAAT
Found at i:86322970 original size:15 final size:15
Alignment explanation
Indices: 86322950--86322983 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
86322940 TCCTCTCCAC
86322950 GGTGATGATGGCGGT
1 GGTGATGATGGCGGT
*
86322965 GGTGATGATGGTGGT
1 GGTGATGATGGCGGT
86322980 GGTG
1 GGTG
86322984 GTGGTGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.03, G:0.56, T:0.29
Consensus pattern (15 bp):
GGTGATGATGGCGGT
Found at i:86323033 original size:15 final size:15
Alignment explanation
Indices: 86323015--86323064 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
86323005 ATCCTCTTCA
86323015 TCATGGTGCTCGTGG
1 TCATGGTGCTCGTGG
**
86323030 TCATGGT-CT--TCA
1 TCATGGTGCTCGTGG
86323042 TCATGGTGCTCGTGG
1 TCATGGTGCTCGTGG
86323057 TCATGGTG
1 TCATGGTG
86323065 ATCTGGCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 8 0.29
13 2 0.07
14 2 0.07
15 16 0.57
ACGTcount: A:0.10, C:0.20, G:0.34, T:0.36
Consensus pattern (15 bp):
TCATGGTGCTCGTGG
Found at i:86323045 original size:27 final size:27
Alignment explanation
Indices: 86323009--86323063 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
86322999 CTCATGATCC
86323009 TCTTCATCATGGTGCTCGTGGTCATGG
1 TCTTCATCATGGTGCTCGTGGTCATGG
86323036 TCTTCATCATGGTGCTCGTGGTCATGG
1 TCTTCATCATGGTGCTCGTGGTCATGG
86323063 T
1 T
86323064 GATCTGGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.11, C:0.22, G:0.29, T:0.38
Consensus pattern (27 bp):
TCTTCATCATGGTGCTCGTGGTCATGG
Found at i:86325777 original size:17 final size:18
Alignment explanation
Indices: 86325755--86325789 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86325745 GATATGATAC
*
86325755 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
86325772 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
86325790 ACGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Done.