Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 279 of 425
Found at i:86326078 original size:22 final size:21
Alignment explanation
Indices: 86326043--86326118 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
86326033 AAAAGGTATC
* *
86326043 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86326064 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
86326087 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
86326106 TGC-AATCATATCT
1 TACAAATCATATCT
86326119 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86326135 original size:35 final size:37
Alignment explanation
Indices: 86326072--86326150 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
86326062 ATTACAAAAT
86326072 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
86326108 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
86326143 CATATCAT
1 CATATCAT
86326151 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:86326148 original size:14 final size:15
Alignment explanation
Indices: 86326093--86326148 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
86326083 AGATTGCATA
86326093 TCATATCTAAGATTG
1 TCATATCTAAGATTG
86326108 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
86326126 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
86326143 -CATATC
1 TCATATC
86326149 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:86326158 original size:17 final size:19
Alignment explanation
Indices: 86326079--86326150 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86326069 AATCATATCT
86326079 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86326098 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86326116 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86326133 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86326151 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86326304 original size:19 final size:19
Alignment explanation
Indices: 86326269--86326305 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86326259 TTGGACTTCG
**
86326269 TTTTTTTTTGGGTTTATTA
1 TTTTTTTTTGGACTTATTA
86326288 TTTTTTTTTGGACTTATT
1 TTTTTTTTTGGACTTATT
86326306 TCTGGGCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.73
Consensus pattern (19 bp):
TTTTTTTTTGGACTTATTA
Found at i:86326612 original size:44 final size:45
Alignment explanation
Indices: 86326496--86326724 Score: 243
Period size: 45 Copynumber: 5.1 Consensus size: 45
86326486 GGAAGGCGAT
*
86326496 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
86326541 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
86326586 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
86326630 ATCT-ATCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
86326675 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
86326722 ATC
1 ATC
86326725 ATCTTGGATC
Statistics
Matches: 151, Mismatches: 22, Indels: 20
0.78 0.11 0.10
Matches are distributed among these distances:
43 7 0.05
44 44 0.29
45 69 0.46
46 1 0.01
47 19 0.13
48 5 0.03
49 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:86326679 original size:89 final size:89
Alignment explanation
Indices: 86326496--86326724 Score: 266
Period size: 89 Copynumber: 2.5 Consensus size: 89
86326486 GGAAGGCGAT
* * * *
86326496 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGC
*
86326561 TCCCCGTCTAATACAGAGACGCCAA
66 T-CCCGTCTAACACAGAGACGCCAA
* *
86326586 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTGGATCTGC
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGC
* * * * *
86326650 T-TCGATGTAAACACATGA-AGGTCAG
66 TCCCG-TCT-AACACA-GAGACGCCAA
*
86326675 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATC
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
86326725 ATCTTGGATC
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
87 2 0.02
88 2 0.02
89 68 0.57
90 9 0.08
92 38 0.32
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (89 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGC
TCCCGTCTAACACAGAGACGCCAA
Found at i:86326795 original size:78 final size:78
Alignment explanation
Indices: 86326664--86326880 Score: 346
Period size: 78 Copynumber: 2.8 Consensus size: 78
86326654 ATGTAAACAC
*
86326664 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
86326729 TGGATCTACTTCA
66 TGGATCTACTTCA
*
86326742 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
86326806 TTGGATCTGCTTCA
65 TTGGATCTACTTCA
* * * **
86326820 ATGAAGATCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
86326881 TGTTTCTTCG
Statistics
Matches: 128, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
77 2 0.02
78 124 0.97
79 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTACTTCA
Found at i:86326983 original size:287 final size:290
Alignment explanation
Indices: 86326549--86327167 Score: 897
Period size: 287 Copynumber: 2.1 Consensus size: 290
86326539 AAATCTGTTA
* *
86326549 TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCTCCCCGTCT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTTCTTCAATCTGCTCCCCGACT
* * * * *
86326614 AATACAGAGATGCCAAATCTATCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCT
66 AATACAGAGATGCCAAA--TATCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAATCT
*
86326679 GCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAAT
129 ACTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAAT
* *
86326744 GAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
194 GAAGGTCCAATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
86326809 GATCTGCTTCAATGAA-GATCAGATCTGCTATG
259 GATCTGCTTCAATGAAGGA-CAGATATGCTATG
* * ** * * * * * *
86326841 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC-
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTTCTTCAATCTGCTCCCCGACT
* *
86326905 AGTACAGAGATGCC-AA-ATCATCTTAGATCTGCTTC-AGCGTAAACACGTGAAAGCCAAATCTA
66 AATACAGAGATGCCAAATATCATCTTAGATCTGCTTCGA-CGTAAACACATGAAAGCCAAATCTA
* * * *
86326967 CTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTTCAATG
130 CTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAATG
86327032 AAGGTCCAATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
195 AAGGTCCAATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
*
86327097 ATCTGCTTCAATGAAGGACAGATATGCTGTG
260 ATCTGCTTCAATGAAGGACAGATATGCTATG
* *
86327128 TCTTCGGTCTGCTCCCCATCTAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
86327168 ATCTTGGATC
Statistics
Matches: 291, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
286 1 0.00
287 221 0.76
288 2 0.01
290 2 0.01
291 13 0.04
292 52 0.18
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (290 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTTCTTCAATCTGCTCCCCGACT
AATACAGAGATGCCAAATATCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAATCTAC
TATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAATGA
AGGTCCAATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
TCTGCTTCAATGAAGGACAGATATGCTATG
Found at i:86327090 original size:78 final size:78
Alignment explanation
Indices: 86326962--86327260 Score: 415
Period size: 78 Copynumber: 3.8 Consensus size: 78
86326952 TGAAAGCCAA
* *
86326962 ATCTACTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTT
1 ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
86327027 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* *
86327040 ATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
86327105 CAATGAAGGACAG
66 CAATGAAGGTCAG
* * * * *
86327118 ATATGCTGTGTCTTCGGTCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
86327183 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* ** ** *
86327196 ATCTGCTATGTCTTCGATCTGCTCCTTGTC-AACGCA-AGGATGCCAAATCATCTTGGATCTTCT
1 ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGA-GATGCCAAATCATCTTGGATCTGCT
86327259 TC
65 TC
86327261 GATGTGAAGA
Statistics
Matches: 197, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
76 1 0.01
77 32 0.16
78 164 0.83
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (78 bp):
ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:86327180 original size:41 final size:41
Alignment explanation
Indices: 86327056--86327181 Score: 111
Period size: 41 Copynumber: 3.2 Consensus size: 41
86327046 TATGTCTTCA
*
86327056 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGG
* * * * * ** *
86327097 ATCTGCT-TCAAT-GAAGGACAGATATG-C-TGT-GTCTTCGG
1 ATCTGCTCCCCATCTAA-TACAGAGATGCCAAATCATCTT-GG
86327135 -TCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGG
86327175 ATCTGCT
1 ATCTGCT
86327182 TCAATGAAGG
Statistics
Matches: 60, Mismatches: 17, Indels: 16
0.65 0.18 0.17
Matches are distributed among these distances:
37 10 0.17
38 14 0.23
39 6 0.10
40 13 0.22
41 17 0.28
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (41 bp):
ATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGG
Found at i:86327532 original size:220 final size:220
Alignment explanation
Indices: 86327203--86327624 Score: 754
Period size: 220 Copynumber: 1.9 Consensus size: 220
86327193 CAGATCTGCT
*
86327203 ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTTCTTCGATGTGA
1 ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA
* *
86327268 AGACATCCGAAGGTTAGATCTGCTATGTCTTCAATCTACTCTCCGTCGAATATGGAGATGCCAAA
66 AAACATCCGAAGGTTAGATCTGCTATGTCTTCAATCTACTCTCCGTCAAATATGGAGATGCCAAA
*
86327333 TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCG
131 TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCG
86327398 TAAACACGTGAAAGCCAAATTTGCA
196 TAAACACGTGAAAGCCAAATTTGCA
*
86327423 ATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA
1 ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA
* * *
86327488 AAACATCCGAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAA
66 AAACATCCGAAGGTTAGATCTGCTATGTCTTCAATCTACTCTCCGTCAAATATGGAGATGCCAAA
* *
86327553 TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCGTTTCAGCG
131 TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCG
86327618 TAAACAC
196 TAAACAC
86327625 CTAAAGGTCA
Statistics
Matches: 192, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
220 192 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (220 bp):
ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA
AAACATCCGAAGGTTAGATCTGCTATGTCTTCAATCTACTCTCCGTCAAATATGGAGATGCCAAA
TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCG
TAAACACGTGAAAGCCAAATTTGCA
Found at i:86336475 original size:9 final size:9
Alignment explanation
Indices: 86336461--86336497 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
86336451 TATAGTTTGA
86336461 TATTCGAAT
1 TATTCGAAT
86336470 TATTCGAAT
1 TATTCGAAT
*
86336479 TATTCGAGT
1 TATTCGAAT
86336488 TATTCGAAT
1 TATTCGAAT
86336497 T
1 T
86336498 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:86336574 original size:18 final size:18
Alignment explanation
Indices: 86336548--86336582 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86336538 ATTCAAGTTG
*
86336548 ACTCGAATAACTCGATTA
1 ACTCAAATAACTCGATTA
86336566 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
86336583 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:86337014 original size:39 final size:39
Alignment explanation
Indices: 86336952--86337071 Score: 177
Period size: 39 Copynumber: 3.1 Consensus size: 39
86336942 CCGGGTACCA
* * *
86336952 TTCCAGCGCATAACTTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* *
86336991 TTCCAGCACATAGCCTGCAGACTTCAAGTTCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* *
86337030 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
86337069 TTC
1 TTC
86337072 AAATACCATG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
Found at i:86338372 original size:21 final size:21
Alignment explanation
Indices: 86338348--86338388 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
86338338 TGGCAATTTC
86338348 AATTCATACTT-TTCAACCATG
1 AATTC-TACTTATTCAACCATG
86338369 AATTCTACTTATTCAACCAT
1 AATTCTACTTATTCAACCAT
86338389 CATTTAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.34, C:0.24, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTCTACTTATTCAACCATG
Found at i:86343466 original size:17 final size:18
Alignment explanation
Indices: 86343444--86343478 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86343434 GATATGATAA
*
86343444 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
86343461 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
86343479 CGGGAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:86343766 original size:22 final size:21
Alignment explanation
Indices: 86343731--86343788 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
86343721 AAAAGGTATC
* *
86343731 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
*
86343752 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAAAT
* *
86343775 TGCATATCATATCT
1 TACAAATCATATCT
86343789 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:86343791 original size:19 final size:19
Alignment explanation
Indices: 86343767--86343840 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
86343757 AATCATATCT
86343767 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86343786 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86343804 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86343823 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86343841 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86343813 original size:37 final size:38
Alignment explanation
Indices: 86343760--86343840 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
86343750 ATTACAAAAT
86343760 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
86343796 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
86343833 CATATCAT
1 CATATCAT
86343841 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:86343860 original size:37 final size:37
Alignment explanation
Indices: 86343770--86343849 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
86343760 CATATCTTCT
* *
86343770 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
86343807 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
86343843 AAGATTA
1 AAGATTA
86343850 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:86345382 original size:55 final size:57
Alignment explanation
Indices: 86345265--86345383 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 57
86345255 TTTGAATAAT
*
86345265 ATTATTAAATATAATTTAATAAAAAATAATAAGTAATTTGATCATATTTTAACATTA
1 ATTATTAAATATAATTTAATAAAAAATAATAAGTAATTTAATCATATTTTAACATTA
* *
86345322 TTTATTAAATATAATTTAAT--AAAATAATATA-TAATTTAATAACAT-TTTTAATA-TA
1 ATTATTAAATATAATTTAATAAAAAATAATA-AGTAATTTAAT--CATATTTTAACATTA
86345377 ATTATTA
1 ATTATTA
86345384 TTAAAATATG
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
55 25 0.45
56 8 0.15
57 22 0.40
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (57 bp):
ATTATTAAATATAATTTAATAAAAAATAATAAGTAATTTAATCATATTTTAACATTA
Found at i:86348615 original size:27 final size:27
Alignment explanation
Indices: 86348569--86348693 Score: 162
Period size: 27 Copynumber: 4.7 Consensus size: 27
86348559 TGGACACATC
* * *
86348569 TTAGCTCTT-ATGAGCATCCCGTTAAA
1 TTAGCTCTTCGTGAGCTTCCCATTAAA
* *
86348595 TTAGCTCATCGTGAGCTTCCCGTTAAA
1 TTAGCTCTTCGTGAGCTTCCCATTAAA
*
86348622 TTAGCTCTTCGCGAGCTTCCCATTAAA
1 TTAGCTCTTCGTGAGCTTCCCATTAAA
86348649 TTAGCTCTTCGTGAGCTTCCCATTAAA
1 TTAGCTCTTCGTGAGCTTCCCATTAAA
** *
86348676 TTATATCTTTGTGAGCTT
1 TTAGCTCTTCGTGAGCTT
86348694 TTCAATAATG
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 8 0.09
27 80 0.91
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (27 bp):
TTAGCTCTTCGTGAGCTTCCCATTAAA
Found at i:86351485 original size:40 final size:41
Alignment explanation
Indices: 86351370--86351556 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 41
86351360 TCAATATATA
* * *
86351370 ATATATCTGGGTTAAAGTCCCACAGGCTTCGTGCTAGTAATAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGT-A-AT
86351413 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
*
86351454 ATATATCCAGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
* *
86351494 ATATATCCGAGTTAAA-TCCCGCAGGCTTAGTGC---T-AT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
*
86351530 ACTATATCCGGGCTTAAAGTCCAGCAG
1 A-TATATCCGGG-TTAAAGTCCCGCAG
86351557 CCTTTGAGCC
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
36 3 0.02
37 10 0.08
38 5 0.04
39 7 0.05
40 54 0.41
41 17 0.13
42 1 0.01
43 35 0.27
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (41 bp):
ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
Found at i:86359232 original size:42 final size:42
Alignment explanation
Indices: 86359147--86359278 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 42
86359137 AGCACTCAAT
* * *
86359147 ATATAGTATATCCGGGTTAAAGTCTCGCAGGCTGCGTGTTGGTA
1 ATATA-TATATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTA
86359191 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* *
86359233 ATATATATA--CGGGTTAAATCCCACAGGCTTAGTGCTGGTA
1 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
86359273 CTATAT
1 ATATAT
86359279 CTGGGCTTAA
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 34 0.41
42 28 0.34
43 15 0.18
44 5 0.06
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:86359248 original size:40 final size:40
Alignment explanation
Indices: 86359153--86359301 Score: 167
Period size: 40 Copynumber: 3.7 Consensus size: 40
86359143 CAATATATAG
* * * *
86359153 TATATCCGGGTTAAAGTCTCGCAGGCTGCGTGTTGGTAATA
1 TATATACGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
86359194 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATATA--CGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
86359236 TATATACGGGTTAAATCCCACAGGCTTAGTGCTGGTACTA
1 TATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
86359276 TATCT--GGGCTTAAGTCCCGCAGGCTT
1 TATATACGGG-TTAAATCCCGCAGGCTT
86359302 TGAGCCAGTG
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.03
39 15 0.16
40 35 0.37
41 5 0.05
42 28 0.29
43 9 0.09
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (40 bp):
TATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:86362337 original size:27 final size:28
Alignment explanation
Indices: 86362294--86362352 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
86362284 GTTCTCTTAC
*
86362294 AAATCAAGAAAATCGAGATT-TGGACTT
1 AAATCAAGAAAATCGAGATTATGGACTA
* *
86362321 AAATC-AGAAAGTACGAGGTTATGGACTA
1 AAATCAAGAAAAT-CGAGATTATGGACTA
86362349 AAAT
1 AAAT
86362353 AGAGTAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 11 0.41
28 10 0.37
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (28 bp):
AAATCAAGAAAATCGAGATTATGGACTA
Found at i:86364996 original size:19 final size:22
Alignment explanation
Indices: 86364974--86365026 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
86364964 CGGCCTGAGG
*
86364974 ACACGGGCGTGT-CCTG-G-GC
1 ACACGGGCGTGTCCCTGTGCCC
**
86364993 ACACGAACGTGTCCCTGTGCCC
1 ACACGGGCGTGTCCCTGTGCCC
86365015 ACACGGGCGTGT
1 ACACGGGCGTGT
86365027 GACCCTATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 10 0.38
20 4 0.15
21 1 0.04
22 11 0.42
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (22 bp):
ACACGGGCGTGTCCCTGTGCCC
Found at i:86367641 original size:18 final size:18
Alignment explanation
Indices: 86367618--86367659 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86367608 TTGGCTTATT
* *
86367618 ATCATCGTCGTCGTCATC
1 ATCATCATCGTCATCATC
*
86367636 ATCATCATCGTTATCATC
1 ATCATCATCGTCATCATC
86367654 ATCATC
1 ATCATC
86367660 TTTATATCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.36
Consensus pattern (18 bp):
ATCATCATCGTCATCATC
Found at i:86367664 original size:15 final size:15
Alignment explanation
Indices: 86367616--86367664 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
86367606 TTTTGGCTTA
* *
86367616 TTATCATCGTCGTCG
1 TTATCATCATCATCG
*
86367631 TCATCATCATCATCG
1 TTATCATCATCATCG
*
86367646 TTATCATCATCATCT
1 TTATCATCATCATCG
86367661 TTAT
1 TTAT
86367665 ATCCATATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.22, C:0.27, G:0.08, T:0.43
Consensus pattern (15 bp):
TTATCATCATCATCG
Found at i:86369484 original size:64 final size:63
Alignment explanation
Indices: 86369403--86369586 Score: 165
Period size: 67 Copynumber: 2.8 Consensus size: 63
86369393 AGACATTATG
* *
86369403 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGCAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG-AGACAAGAGAGCTACGAGATAA
* * * * * *
86369467 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATG-AGACAAGAGAGCTACGAGAT
86369532 AA
62 AA
** * * * *
86369534 ACTG--GCTAGGTCATATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGAG-ACAAGAGAGC
86369587 CGAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 15 0.16
67 30 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGAGACAAGAGAGCTACGAGATAA
Found at i:86373145 original size:9 final size:8
Alignment explanation
Indices: 86373130--86373154 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86373120 ATAATGATAT
86373130 TAAAAAAA
1 TAAAAAAA
86373138 TAAAAAAA
1 TAAAAAAA
86373146 TAAAAAAA
1 TAAAAAAA
86373154 T
1 T
86373155 TTATTACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:86379591 original size:26 final size:26
Alignment explanation
Indices: 86379554--86379637 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86379544 TGATACAAAT
* *
86379554 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86379580 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86379606 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86379632 TGATAA
1 TGATAA
86379638 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:86383410 original size:22 final size:23
Alignment explanation
Indices: 86383362--86383409 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
86383352 TGATTTAAAC
*
86383362 AAATACTCATATTTATATAATTA
1 AAATACTCATAATTATATAATTA
*
86383385 AAATATTCATAATT-TATAATATA
1 AAATACTCATAATTATATAAT-TA
86383408 AA
1 AA
86383410 TGTTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (23 bp):
AAATACTCATAATTATATAATTA
Found at i:86383487 original size:15 final size:16
Alignment explanation
Indices: 86383467--86383497 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86383457 ACATTACTTA
86383467 AAATTT-AAATTTATT
1 AAATTTAAAATTTATT
86383482 AAATTTAAAATTTATT
1 AAATTTAAAATTTATT
86383498 TTTCTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AAATTTAAAATTTATT
Found at i:86383546 original size:24 final size:22
Alignment explanation
Indices: 86383502--86383546 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
86383492 TTTATTTTTC
*
86383502 TTCAAAAAATTTAAAATTCATT
1 TTCAAAAAAATTAAAATTCATT
*
86383524 TTCAAATAAAATTATAATATCAT
1 TTCAAA-AAAATTAAAAT-TCAT
86383547 ATAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTCAAAAAAATTAAAATTCATT
Found at i:86384108 original size:28 final size:27
Alignment explanation
Indices: 86384083--86384152 Score: 54
Period size: 30 Copynumber: 2.5 Consensus size: 27
86384073 AATAAAAATA
*
86384083 TAAAAATATTAAATATTAAATTAAAATAA
1 TAAAAATATTAAAT-TTAAATAAAAAT-A
*
86384112 TGTAAAAT-TTCAAATTTAAA-AAAAATA
1 T-AAAAATATT-AAATTTAAATAAAAATA
*
86384139 TAAACATAATTAAA
1 TAAAAAT-ATTAAA
86384153 AGATAACCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
26 4 0.12
27 5 0.15
28 7 0.21
29 8 0.24
30 9 0.27
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (27 bp):
TAAAAATATTAAATTTAAATAAAAATA
Found at i:86390138 original size:19 final size:20
Alignment explanation
Indices: 86390116--86390162 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
86390106 TATATTAAAT
86390116 ATAAAA-ATGTGATGTTTTA
1 ATAAAATATGTGATGTTTTA
86390135 ATAAAAGTTATGTGATGTTTTA
1 ATAAAA--TATGTGATGTTTTA
86390157 ATAAAA
1 ATAAAA
86390163 GTTATCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.24
22 19 0.76
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
ATAAAATATGTGATGTTTTA
Found at i:86390147 original size:22 final size:22
Alignment explanation
Indices: 86390122--86390167 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
86390112 AAATATAAAA
86390122 ATGTGATGTTTTAATAAAAGTT
1 ATGTGATGTTTTAATAAAAGTT
86390144 ATGTGATGTTTTAATAAAAGTT
1 ATGTGATGTTTTAATAAAAGTT
86390166 AT
1 AT
86390168 CTTAAGGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (22 bp):
ATGTGATGTTTTAATAAAAGTT
Found at i:86396224 original size:49 final size:49
Alignment explanation
Indices: 86396164--86396469 Score: 564
Period size: 49 Copynumber: 6.3 Consensus size: 49
86396154 GTATGAGATA
86396164 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86396213 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86396262 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86396311 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86396360 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86396409 TATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86396455 TATAAATGTGATAAG
1 TATATATGTGATAAG
86396470 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
46 17 0.07
48 20 0.08
49 215 0.85
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:86398717 original size:38 final size:38
Alignment explanation
Indices: 86398649--86398723 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
86398639 AATCCGAGTT
*
86398649 TAAAGACCCGCTGACTATATGAAGAAATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAAATTATGTCCGGG
* * *
86398687 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAAATTATGTCCGG
86398724 ATTAAAATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAAATTATGTCCGGG
Found at i:86398836 original size:40 final size:40
Alignment explanation
Indices: 86398781--86398936 Score: 253
Period size: 40 Copynumber: 3.9 Consensus size: 40
86398771 CTTGACGACG
86398781 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
86398821 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
86398861 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
86398901 ATCC-GGCTAGGTCCCGAAGAGCAATT-ATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGC-ATTCATGCTAGTGA
86398937 CGTGTATTCG
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 24 0.22
40 85 0.78
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:86401750 original size:79 final size:81
Alignment explanation
Indices: 86401647--86401831 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
86401637 ACGACTCGCT
** * * *
86401647 CAAATGCCTTCGGGACAAATCCCGG-TTATAGTAACTTGCACGAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCT-ACTC
* *
86401709 CGGGTTTAGTAACTT-GCA
63 CGGATATAGTAACTTAGCA
* * *
86401727 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTACTCCGG
*
86401791 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
86401807 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86401832 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 5 0.06
79 50 0.56
80 34 0.38
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTACTCCGG
ATATAGTAACTTAGCA
Found at i:86401831 original size:40 final size:39
Alignment explanation
Indices: 86401647--86401831 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 39
86401637 ACGACTCGCT
** * *
86401647 CAAATGCCTTCGGGACAAATCCCGGTTATAGTAACTTGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * * *
86401687 CGAATGCCTTCGGGACTTAACTCGGGTTTAGTAACTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
86401727 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
86401766 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCA
86401807 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
86401832 CATCATTCGA
Statistics
Matches: 113, Mismatches: 25, Indels: 14
0.74 0.16 0.09
Matches are distributed among these distances:
38 2 0.02
39 28 0.25
40 74 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:86407207 original size:40 final size:39
Alignment explanation
Indices: 86407161--86407299 Score: 131
Period size: 39 Copynumber: 3.5 Consensus size: 39
86407151 CGGATATAAC
*
86407161 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGTT-TAGT
* * *
86407201 GACTCGCACGAATGCCTTCGGGACTTAACCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
* * * *
86407240 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA-T
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGG-TTTAGT
* *
86407278 TATCTCGCACGAATGCCTTCGG
1 GA-CTCGCACAAATGCCTTCGG
86407300 ATCCTAGTCC
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 10 0.12
39 44 0.52
40 28 0.33
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
Found at i:86407352 original size:40 final size:40
Alignment explanation
Indices: 86407164--86407352 Score: 138
Period size: 40 Copynumber: 4.8 Consensus size: 40
86407154 ATATAACGAC
* ** * *
86407164 TCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGAC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
86407204 TCGCACGAATGCCTTCGGGACTTA-ACCGGGTTTAGTAACT
1 TCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
* * *
86407244 T-GCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTATC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
86407282 TCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACT
1 TCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACT
*
86407323 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TCGCACAAAGCCTTCGGGACTTAGCCCGGA
86407353 CATCATTCGA
Statistics
Matches: 115, Mismatches: 24, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
38 9 0.08
39 45 0.39
40 51 0.44
41 10 0.09
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
TCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
Found at i:86411499 original size:49 final size:49
Alignment explanation
Indices: 86411439--86411745 Score: 573
Period size: 49 Copynumber: 6.3 Consensus size: 49
86411429 GTATGAGATA
86411439 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86411488 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86411537 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86411586 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86411635 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
86411684 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
86411731 TATAAATGTGATAAG
1 TATATATGTGATAAG
86411746 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 16 0.06
49 237 0.94
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:86415411 original size:40 final size:40
Alignment explanation
Indices: 86415352--86415493 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
86415342 AAATTGAATG
* * *
86415352 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
86415392 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
86415432 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
86415472 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
86415494 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:86415494 original size:40 final size:39
Alignment explanation
Indices: 86415391--86415519 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
86415381 TGCTGGAAAT
* * *
86415391 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
86415431 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
86415471 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
86415511 TATATCCGG
1 TATATCCGG
86415520 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:86418408 original size:19 final size:19
Alignment explanation
Indices: 86418374--86418411 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
86418364 AGGTTTAATG
86418374 TTAGATTAATAGTTTTTGT
1 TTAGATTAATAGTTTTTGT
86418393 TTAGATTAATAGTTTTTGT
1 TTAGATTAATAGTTTTTGT
86418412 AAAGTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (19 bp):
TTAGATTAATAGTTTTTGT
Found at i:86418934 original size:41 final size:40
Alignment explanation
Indices: 86418889--86418996 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 40
86418879 AGACAAAGCA
86418889 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTT-G
* *
86418930 GCTATATATGGCACTTAATGTGCG-GTTTGAGATAGCTTG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTG
* * * * *
86418969 GCTATGTACGACACTTAGTATACGAGAT
1 GCTATATATGGCACTTAGTGTGCGAGAT
86418997 ATCTAGTATT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 19 0.33
40 15 0.26
41 23 0.40
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTG
Found at i:86424668 original size:46 final size:44
Alignment explanation
Indices: 86424562--86424681 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 44
86424552 TATTTGTGTG
*
86424562 GATGCTATGTCCCAGACATGGTCTTACACTGACGCATCTCATAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGACACATCTCATAGCC
* * * * *
86424608 AATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCATAGCC
86424654 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
86424682 AGCACTAGCC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 12 0.18
45 13 0.20
46 40 0.62
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGACACATCTCATAGCC
Found at i:86424704 original size:46 final size:46
Alignment explanation
Indices: 86424510--86424732 Score: 147
Period size: 46 Copynumber: 4.7 Consensus size: 46
86424500 GGGTCAGGTA
* *
86424510 CCGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTA-GCAT-ATTTGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTACGCCTCA--TG-G
** *
86424560 TGGATGCTATGTCCCAGACATGGTCTTACACT-G---ACGCATCTCATAG
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCCTACGC--CTCATGG
* * * * *
86424606 CCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCATGG
86424652 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTA-GCCTCAAT-G
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACGCCTC-ATGG
* * *
86424698 CTGATGCCATATCCTAGACATGGTCTTACACTAGC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
86424733 TCACGCAAGT
Statistics
Matches: 141, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 53 0.38
47 16 0.11
48 17 0.12
49 3 0.02
50 27 0.19
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGCCTCATGG
Found at i:86428177 original size:12 final size:12
Alignment explanation
Indices: 86428160--86428186 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86428150 TCATTGAGTT
86428160 ACATGGCCTAAC
1 ACATGGCCTAAC
86428172 ACATGGCCTAAC
1 ACATGGCCTAAC
86428184 ACA
1 ACA
86428187 CGAGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.33, G:0.15, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAAC
Found at i:86430001 original size:49 final size:49
Alignment explanation
Indices: 86429845--86430115 Score: 207
Period size: 49 Copynumber: 5.7 Consensus size: 49
86429835 TATGTGTACT
* * * *
86429845 AGTGTAAGACATGTCTGGGACAT-GCATC-AGCCTCGAGATATGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
* * * * * * * *
86429893 AATTTAAGACCTGTCTGGGACATGGCGTCG-GCTTG--ACATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * *
86429937 AGTGTAAGACCTGTCTGGGATATGGCATCTACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * * *
86429986 AGTGTAAGACTTGTCTAGGACATGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * **
86430035 AGTGTAAGACCTGTCTGGGACATGGCGTCGGCCTTGATATATGGAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* *
86430084 AGTGTAAGACCTGTCTGGGACGTAGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
86430116 TTAAATGTGT
Statistics
Matches: 177, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
44 27 0.15
45 1 0.01
46 5 0.03
47 4 0.02
48 24 0.14
49 116 0.66
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:86432719 original size:39 final size:39
Alignment explanation
Indices: 86432661--86432817 Score: 133
Period size: 39 Copynumber: 4.0 Consensus size: 39
86432651 TTCAGTGATG
**
86432661 TATATCCGGACTTAGGGT-CCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCCGCAGGCT-TGTGCTGGAAT
* * * *
86432700 TATATCCGGACTTAAGGT-CCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCCGCAGGCT-TGTGCTGGAAT
* * * *
86432739 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAAGTCCCGCAGGCTT-GTGCTGGAAT
** *
86432778 TATA-CCGGGTTTAAATTCCCGCAGGCTTGTGCTGGTAAT
1 TATATCCGGACTTAAAGTCCCGCAGGCTTGTGCTGG-AAT
86432817 T
1 T
86432818 GGTTTCAAGT
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
38 16 0.16
39 81 0.84
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCCGCAGGCTTGTGCTGGAAT
Found at i:86438549 original size:40 final size:40
Alignment explanation
Indices: 86438487--86438706 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
86438477 TATTCGAATG
* *
86438487 ATATCCGGGCTAAATCCTGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86438527 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
86438570 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
86438610 AGATCCGGACTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
86438650 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86438690 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
86438707 AAGATACTTG
Statistics
Matches: 155, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 9 0.06
40 108 0.70
41 1 0.01
43 37 0.24
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:86438630 original size:83 final size:79
Alignment explanation
Indices: 86438491--86438706 Score: 256
Period size: 83 Copynumber: 2.7 Consensus size: 79
86438481 CGAATGATAT
* * * **
86438491 CCGGGCTAAATCCTGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCA
86438556 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
* *
86438574 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGATCCGGACTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGG-CTAAGTCCCGAAGGCATTCA
*
86438639 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* * *
86438654 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGCTAAATCCC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGCTAAGTCCC
86438707 AAGATACTTG
Statistics
Matches: 118, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
79 10 0.08
80 46 0.39
81 2 0.02
82 2 0.02
83 58 0.49
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:86443222 original size:40 final size:40
Alignment explanation
Indices: 86443021--86443208 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
86443011 TATTCGGATG
* *
86443021 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
86443061 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86443100 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
86443140 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
86443180 ATAACCGGGCTAAGTCCCGGAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
86443209 AGCAAGTAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 36 0.26
40 102 0.74
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86443239 original size:119 final size:119
Alignment explanation
Indices: 86443021--86443241 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 119
86443011 TATTCGGATG
* *
86443021 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
86443086 TTGTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCTGAAGGCATTTGTGCGAGTTACT
* *
86443140 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGGAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
86443204 ATTTGAGCAAG-TAGCTATAT-CTGGCTAAATTCTGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCTGAAGG
86443242 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 65 0.72
120 23 0.26
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCTGAAGGCATTTGTGCGAGTTACT
Found at i:86444653 original size:40 final size:40
Alignment explanation
Indices: 86444590--86444667 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
86444580 GTGTTACACT
* *
86444590 CTTGGTGTGTAGGATTGCATGGGTTGATTTTATCCCCATA
1 CTTGGTGTGTAGGATTGCATGGGTCGATCTTATCCCCATA
* ** *
86444630 CTTGGTGTGTAGGGTTGGGTGGGTCGATCTTGTCCCCA
1 CTTGGTGTGTAGGATTGCATGGGTCGATCTTATCCCCA
86444668 CATAGTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.13, C:0.17, G:0.33, T:0.37
Consensus pattern (40 bp):
CTTGGTGTGTAGGATTGCATGGGTCGATCTTATCCCCATA
Found at i:86449549 original size:38 final size:37
Alignment explanation
Indices: 86449488--86449665 Score: 187
Period size: 38 Copynumber: 4.6 Consensus size: 37
86449478 ATATTTGATG
* *
86449488 TATCCGGGCTTAAAGACCCGCAGGCTGTATGTTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TATGCTGGAATTA
*
86449528 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGC-TTATGCTGG-AATTA
* * *
86449566 TATCCGTGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-ATGCTGGAATTA
*
86449604 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTA-TGCTGGAATTA
* *
86449642 TATCCGAGCTTAAAGTCCCACAGG
1 TATCCG-GGTTAAA-TCCCGCAGG
86449666 TTTTGTGCTG
Statistics
Matches: 122, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
37 3 0.02
38 89 0.73
39 14 0.11
40 16 0.13
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (37 bp):
TATCCGGGTTAAATCCCGCAGGCTTATGCTGGAATTA
Found at i:86449586 original size:76 final size:78
Alignment explanation
Indices: 86449488--86449665 Score: 245
Period size: 76 Copynumber: 2.3 Consensus size: 78
86449478 ATATTTGATG
* * *
86449488 TATCCGGGCTTAAAGACCCGCAGGCTGT-ATGTTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGAGCTTAAAGTCCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
*
86449552 TTGTGCTGGTAATA
65 TAGTGCTGGTAATA
* * *
86449566 TATCCGTG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCCGAGCTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTT
*
86449629 AGTGCTGGTATTA
66 AGTGCTGGTAATA
*
86449642 TATCCGAGCTTAAAGTCCCACAGG
1 TATCCGAGCTTAAAGTCCCGCAGG
86449666 TTTTGTGCTG
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
75 1 0.01
76 62 0.70
77 10 0.11
78 15 0.17
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCCGAGCTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTT
AGTGCTGGTAATA
Found at i:86466180 original size:49 final size:47
Alignment explanation
Indices: 86466064--86466277 Score: 168
Period size: 47 Copynumber: 4.5 Consensus size: 47
86466054 GGCGTAGAAT
* *
86466064 GCCGATGCCATGTCCTAGACGTGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTCAA
* * *
86466111 GTCGATGCCATGTCCTAGACATAGTCTTACACTGACT-ATGATCATCGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCAT-ATC-TC-AA
* * * * **
86466160 GCCGACGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCACATATCT-GT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACT--CATATCTCAA
* * * * *
86466210 GCTGATGCCATGTCCTAGACATGGTTTTATACTGA--CACATCTCGTA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTC-AA
*
86466256 GCCGATG-CATGTCCCAGACATG
1 GCCGATGCCATGTCCTAGACATG
86466278 TTTTACGTTA
Statistics
Matches: 132, Mismatches: 25, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
44 6 0.05
45 14 0.11
46 8 0.06
47 36 0.27
48 2 0.02
49 30 0.23
50 28 0.21
51 2 0.02
52 1 0.01
53 3 0.02
54 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTCAA
Found at i:86474028 original size:46 final size:48
Alignment explanation
Indices: 86473770--86474089 Score: 268
Period size: 46 Copynumber: 6.8 Consensus size: 48
86473760 GCGTAGAATA
*
86473770 CCGATGCCATGTCCCAGACATGGTCTTACACTGGATTATATCTCAA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGG
* * * * *
86473817 TCGATGCCATGTCCTAGACATGGTCTTGCACTGAC-TATCATCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATC-TCAAGG
* * * ** * * *
86473866 TCGACGCCATG-CCCTAGACATGGTCTTAGACAAGCTCTCACATATC-TGTG
1 CCGATGCCATGTCCC-AGACATGGTCTTACACTGGCT-T-ATATCTCAAG-G
* *
86473916 CCGATGCCATGTCCCAGAGATGGTCTTACACTGGC--ATATCTCGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTC-AAGG
* * *
86473962 TCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTATGTCTCAAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGG
* * ** *
86474008 CCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATATCTCAAGG
86474054 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
86474090 CATAATAACC
Statistics
Matches: 218, Mismatches: 38, Indels: 33
0.75 0.13 0.11
Matches are distributed among these distances:
44 13 0.06
45 13 0.06
46 65 0.30
47 47 0.22
48 18 0.08
49 27 0.12
50 28 0.13
51 6 0.03
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGG
Found at i:86479605 original size:46 final size:46
Alignment explanation
Indices: 86479538--86479674 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
86479528 TATATATACA
* * *
86479538 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
86479584 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
86479630 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
86479675 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:86479709 original size:47 final size:47
Alignment explanation
Indices: 86479648--86479936 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
86479638 ACACATTTCG
* *
86479648 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
86479695 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
86479742 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
86479789 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
86479836 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
86479887 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
86479934 CAT
1 CAT
86479937 AAAATCCTAA
Statistics
Matches: 223, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 181 0.81
49 2 0.01
51 40 0.18
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:86481824 original size:40 final size:40
Alignment explanation
Indices: 86481716--86481925 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86481706 CGGGATTTAA
* * * * *
86481716 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86481756 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86481796 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86481836 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86481876 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86481916 CCGGATATAT
1 CCGGATATAT
86481926 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86489958 original size:40 final size:40
Alignment explanation
Indices: 86489850--86490059 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86489840 CGGGATTTAA
* * * * *
86489850 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86489890 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86489930 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86489970 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86490010 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86490050 CCGGATATAT
1 CCGGATATAT
86490060 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86496702 original size:47 final size:46
Alignment explanation
Indices: 86496626--86496948 Score: 223
Period size: 46 Copynumber: 6.8 Consensus size: 46
86496616 GGGTAGAATA
*
86496626 CTGATGCCATGTCCCAGACATGGTTTTACACTAGCTCAGTTCTCAAGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA--TCTCAAGT
* * *
86496674 C-GATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCATCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGC--TCATC-TCAAGT
* * *
86496722 CTGACGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATCTGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCTCA-A---GT
* * * *
86496771 GCTGATGTCATGTCCCAGACATGGTTTTATACT-GACACATCTCATAG-
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCTCA-AGT
* * * *
86496818 CCGATG-CATGTCCCAGACAT-GTCTTACGCTAGCTTACATCTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCTCAAGT
* * * * *
86496864 CCGTTG-CATGTCTCAGACAT-GTCTTAAACTAGCTTTCGTCTCAA-T
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGC--TCATCTCAAGT
* * *
86496909 GCTAATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT
86496949 AATAACCCAT
Statistics
Matches: 218, Mismatches: 38, Indels: 40
0.74 0.13 0.14
Matches are distributed among these distances:
44 8 0.04
45 18 0.08
46 55 0.25
47 49 0.22
48 18 0.08
49 35 0.16
50 29 0.13
51 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCTCAAGT
Found at i:86501709 original size:43 final size:43
Alignment explanation
Indices: 86501601--86501752 Score: 243
Period size: 43 Copynumber: 3.6 Consensus size: 43
86501591 TTTAAAAAAT
*
86501601 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCGCAAA
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTCGCAAA
*
86501644 CGCC-CTAAAGATCATGACCTTTAGCGGCGCTTTTCCCGCAAA
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTCGCAAA
*
86501686 CGCCACTAAAGATCATGACCTTTAGCGGCGCTTTTCTCGCAAA
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTCGCAAA
* * *
86501729 CGCCGCTAAAAATTATGAACTTTA
1 CGCCGCTAAAGATCATGACCTTTA
86501753 AAAAAATTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 40 0.40
43 61 0.60
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTCGCAAA
Found at i:86501801 original size:22 final size:23
Alignment explanation
Indices: 86501773--86501815 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
86501763 TTTATTTTAA
*
86501773 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
86501795 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
86501816 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:86520761 original size:37 final size:37
Alignment explanation
Indices: 86520678--86520768 Score: 139
Period size: 37 Copynumber: 2.4 Consensus size: 37
86520668 TTATTACGAA
86520678 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
86520715 GT-TGTACCCGGACGTAATCTCCACACGTAGTCATCGG
1 GTCT-TACCCGGACATAATCTCCACACGTAGTCATCGG
*
86520752 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
86520769 TTTCTAAGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:86520962 original size:49 final size:49
Alignment explanation
Indices: 86520813--86520963 Score: 257
Period size: 49 Copynumber: 3.1 Consensus size: 49
86520803 CAACATTCAC
* * *
86520813 ATATGTACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACAT
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
86520862 ATGTATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCACAT
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
86520911 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
86520960 ATAT
1 ATAT
86520964 TATTATGTAC
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 96 1.00
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:86526246 original size:12 final size:12
Alignment explanation
Indices: 86526229--86526254 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86526219 TTAGGCAGAG
86526229 AAACGCCGCTAA
1 AAACGCCGCTAA
86526241 AAACGCCGCTAA
1 AAACGCCGCTAA
86526253 AA
1 AA
86526255 CCCTTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:86527920 original size:154 final size:154
Alignment explanation
Indices: 86527626--86527923 Score: 508
Period size: 154 Copynumber: 1.9 Consensus size: 154
86527616 CGCGATATAT
*
86527626 ATCATCATCATCATCAAGGCATGTTTTGTTCACTCTCCTCCAAACCTTCCAACAGTGCTGCTGGG
1 ATCATCATCATCATCAAGGCATGTTTTGTTCACTCTCCTCCAAACCTTCCAACAGTACTGCTGGG
86527691 GGTAGTGTGTAGAATATTGCTGGAAGCGTTTGAGGGAGACTGAGCAACCAATTCCTTGTAAGCTT
66 GGTAGTGTGTAGAATATTGCTGGAAGCGTTTGAGGGAGACTGAGCAACCAATTCCTTGTAAGCTT
*
86527756 CAATGTATATATATATATATCATC
131 CAATGAATATATATATATATCATC
* *
86527780 ATCATCATCATCATCAAGGCATGTTTTGTTCATTCTCCTCCAAACCTTCCAGCAGTACTGCTGGG
1 ATCATCATCATCATCAAGGCATGTTTTGTTCACTCTCCTCCAAACCTTCCAACAGTACTGCTGGG
* * *
86527845 GAGTAGTGTGTAGCATATTGCTGGAAGCGTTTGAGGGAGATTGAGCAACCGATTCCTTGTAAGCT
66 G-GTAGTGTGTAGAATATTGCTGGAAGCGTTTGAGGGAGACTGAGCAACCAATTCCTTGTAAGCT
*
86527910 TTAAT-AATATATAT
130 TCAATGAATATATAT
86527924 TCTTCTCTTG
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
154 71 0.53
155 64 0.47
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (154 bp):
ATCATCATCATCATCAAGGCATGTTTTGTTCACTCTCCTCCAAACCTTCCAACAGTACTGCTGGG
GGTAGTGTGTAGAATATTGCTGGAAGCGTTTGAGGGAGACTGAGCAACCAATTCCTTGTAAGCTT
CAATGAATATATATATATATCATC
Found at i:86528757 original size:29 final size:28
Alignment explanation
Indices: 86528706--86528773 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
86528696 ATAGGTAATA
86528706 TTATACATAAATTTTAATTTTGATTAAAT
1 TTATACATAAATTTTAA-TTTGATTAAAT
*
86528735 TTATACATAAGATTTTGAA-TTGATTTAAT
1 TTATACATAA-ATTTT-AATTTGATTAAAT
86528764 TT-T-CATAAAT
1 TTATACATAAAT
86528774 CATCGACACC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 2 0.06
27 5 0.14
28 1 0.03
29 21 0.58
30 5 0.14
31 2 0.06
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (28 bp):
TTATACATAAATTTTAATTTGATTAAAT
Found at i:86536635 original size:19 final size:19
Alignment explanation
Indices: 86536611--86536649 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
86536601 CTTCGGGCTC
*
86536611 CTCAACACAGCAGCCCAAT
1 CTCAACACAACAGCCCAAT
*
86536630 CTCAACACAACAGCCTAAT
1 CTCAACACAACAGCCCAAT
86536649 C
1 C
86536650 ATTCTCCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.41, G:0.08, T:0.13
Consensus pattern (19 bp):
CTCAACACAACAGCCCAAT
Found at i:86542021 original size:15 final size:15
Alignment explanation
Indices: 86542001--86542052 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
86541991 ATGGTAGTAC
86542001 AACAAAATAGAACAA
1 AACAAAATAGAACAA
* *
86542016 AACAAATTAGAACAG
1 AACAAAATAGAACAA
* * *
86542031 AATAGAATAGAGCAA
1 AACAAAATAGAACAA
86542046 AACAAAA
1 AACAAAA
86542053 CAACAAATGT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.67, C:0.12, G:0.12, T:0.10
Consensus pattern (15 bp):
AACAAAATAGAACAA
Found at i:86548197 original size:2 final size:2
Alignment explanation
Indices: 86548185--86548214 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
86548175 TCATGATAAC
86548185 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86548215 AGTGCTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:86548789 original size:2 final size:2
Alignment explanation
Indices: 86548784--86548829 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
86548774 TATATATATA
86548784 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86548826 TG TG
1 TG TG
86548830 AATATGACTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86554483 original size:21 final size:21
Alignment explanation
Indices: 86554457--86554498 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
86554447 GAGAACCTTT
86554457 TTCCATTGG-GACACCCTCAAA
1 TTCCA-TGGAGACACCCTCAAA
*
86554478 TTCCATGGAGACACCTTCAAA
1 TTCCATGGAGACACCCTCAAA
86554499 AATATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (21 bp):
TTCCATGGAGACACCCTCAAA
Found at i:86557791 original size:28 final size:28
Alignment explanation
Indices: 86557751--86557814 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
86557741 TGGGAAGTAG
* *
86557751 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
86557779 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
86557807 TTGGGCCT
1 TTGGGCCT
86557815 AAAGGGGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:86558170 original size:27 final size:27
Alignment explanation
Indices: 86558131--86558420 Score: 207
Period size: 27 Copynumber: 10.7 Consensus size: 27
86558121 TAATAAAGAG
* *
86558131 AAATTATCAAAATACCTCCTG-TTTGTA
1 AAATTACCGAAATACC-CCTGATTTGTA
* *
86558158 AAATTACTGAAATA-CCCTCGATTTGGA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * *
86558185 AAACTACCGAAGTACCCCCGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* *
86558212 AAATTACCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* *
86558239 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * * *
86558266 AAATTATCAAAATA-CCCTCAGTTTGTG
1 AAATTACCGAAATACCCCTGA-TTTGTA
* *
86558293 AAATTATCGAACTA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * *
86558320 GAATTATCGAAATACTCCC-AATTTGTA
1 AAATTACCGAAATAC-CCCTGATTTGTA
* * *
86558347 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
* ** *
86558374 AAATTACCAAAATACCATTG-TAGTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
* *
86558401 AAATGACCGACATACCCCTG
1 AAATTACCGAAATACCCCTG
86558421 TAGGGTAAAA
Statistics
Matches: 214, Mismatches: 40, Indels: 18
0.79 0.15 0.07
Matches are distributed among these distances:
25 3 0.01
26 9 0.04
27 195 0.91
28 4 0.02
29 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGATTTGTA
Found at i:86558282 original size:81 final size:80
Alignment explanation
Indices: 86558131--86558417 Score: 274
Period size: 81 Copynumber: 3.5 Consensus size: 80
86558121 TAATAAAGAG
* * * * * * *
86558131 AAATTATCAAAATACCTCCTGTTTGTAAAATTACTGAAATACCCTCGATTTGGAAAACTACCGAA
1 AAATTACCAAAATACC-CTTGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTATCGAA
* *
86558196 GTACCCCCGATTTGTA
65 ATACCCTCGATTTGTA
* *
86558212 AAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTTG-TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTATCGAA
*
86558277 ATACCCTC-AGTTTGTG
65 ATACCCTCGA-TTTGTA
* * * * * *
86558293 AAATTATCGAACTACCCTCGATTTGTAGAATTATCGAAATACTCC-CAATTTGTAAAATTATCGA
1 AAATTACCAAAATACCCTTG-TTTGTAAAATTACCGAAATAC-CCTCAATTTGTAAAATTATCGA
* *
86558357 AATACCCTTG-TAGTGTA
64 AATACCCTCGAT-TTGTA
* * * *
86558374 AAATTACCAAAATACCATTGTAGTGTAAAATGACCGACATACCC
1 AAATTACCAAAATACCCTTGT-TTGTAAAATTACCGAAATACCC
86558418 CTGTAGGGTA
Statistics
Matches: 167, Mismatches: 33, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
80 8 0.05
81 157 0.94
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAA
TACCCTCGATTTGTA
Found at i:86558422 original size:27 final size:27
Alignment explanation
Indices: 86558343--86558434 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
86558333 ACTCCCAATT
* *
86558343 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* * *
86558370 TGTAAAATTACCAAAATACCATTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
86558397 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
86558424 GGTAAAATGAC
1 TGTAAAATGAC
86558435 TATTTTGCCC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:86561509 original size:28 final size:28
Alignment explanation
Indices: 86561453--86561516 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
86561443 GCTATATGAA
*
86561453 AAACACAATTTAAACTTGTCAAGAGTCG
1 AAACACAATTTAAACTTGTCAAGACTCG
*
86561481 AAACACAATTTAAACTTAG-CTAGACTCG
1 AAACACAATTTAAACTT-GTCAAGACTCG
86561509 AATACACA
1 AA-ACACA
86561517 CTATGTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 26 0.81
29 6 0.19
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.23
Consensus pattern (28 bp):
AAACACAATTTAAACTTGTCAAGACTCG
Found at i:86568372 original size:79 final size:82
Alignment explanation
Indices: 86568256--86568440 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
86568246 ACGACTCGCT
** * *
86568256 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
86568319 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
86568336 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
86568399 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
86568416 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86568441 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:86568440 original size:40 final size:39
Alignment explanation
Indices: 86568249--86568440 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
86568239 GGATATAACG
* ** * *
86568249 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
86568289 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
86568329 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
86568368 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
86568408 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
86568441 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:86574280 original size:79 final size:81
Alignment explanation
Indices: 86574179--86574363 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
86574169 ACGACTCGCT
** * *
86574179 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
86574242 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
86574259 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
86574323 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
86574339 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86574364 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:86574363 original size:40 final size:39
Alignment explanation
Indices: 86574172--86574363 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
86574162 GGATATAACG
* ** * *
86574172 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
86574212 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
86574252 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
86574291 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
86574331 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
86574364 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:86583663 original size:30 final size:30
Alignment explanation
Indices: 86583629--86583689 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
86583619 TTCCCGAGCC
*
86583629 TAGGGGCAAAAGTGTAAATATGCAATAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
86583659 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
86583689 T
1 T
86583690 GAGTTAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:86584272 original size:68 final size:68
Alignment explanation
Indices: 86584199--86584350 Score: 168
Period size: 67 Copynumber: 2.2 Consensus size: 68
86584189 CATCATGTGT
* * * *
86584199 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
86584262 TGTAG
64 TGTAG
* * *
86584267 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCAT
86584330 GTAG
65 GTAG
* *
86584334 ATAAAAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
86584351 TAAACTGGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 3 0.04
67 25 0.36
68 15 0.21
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATG
TAG
Found at i:86588542 original size:46 final size:46
Alignment explanation
Indices: 86588475--86588649 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
86588465 TGTAACCCGC
86588475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
86588521 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
86588571 CTC-T---TGAACTTGGACTCAACTCAACGAGTTCGGACATTCGAAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
86588614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
86588650 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
46 64 0.58
47 27 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:86588595 original size:93 final size:93
Alignment explanation
Indices: 86588482--86588653 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86588472 CGCCCATAAG
* * *
86588482 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
86588547 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
86588575 TGAACTTGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
*
86588640 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
86588654 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:86588669 original size:46 final size:47
Alignment explanation
Indices: 86588480--86588669 Score: 155
Period size: 46 Copynumber: 4.1 Consensus size: 47
86588470 CCCGCCCATA
* *
86588480 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCG---CATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGAACCATCC-T
* * *
86588525 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG-AACCATC-CT
* * ** *
86588575 --TGAACTTGGACTCAACTCAACGAGTTCGGACATTCGAATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGAA-CCATCCT
* *
86588619 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-AACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGAACCATCCT
86588665 AGTGA
1 AGTGA
86588670 CATGTCACTT
Statistics
Matches: 116, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
44 4 0.03
45 3 0.03
46 70 0.60
47 33 0.28
50 5 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGAACCATCCT
Found at i:86591871 original size:133 final size:130
Alignment explanation
Indices: 86591721--86592028 Score: 345
Period size: 130 Copynumber: 2.4 Consensus size: 130
86591711 TGTTTTGACT
* * * * * *
86591721 AAACGAGAAA-TCACAACCCAGCACGATAGGGCATGATTCC-CGAATCGTCAAACACCG-AGTAT
1 AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCCACGAATCGCCAAACACCGCA-CAT
* * * * *
86591783 CGCCTTCGTTTTAAATGATTTTTTAGAAGATACGAGTGAAATTTTGAGGGGATATTTAATTATTT
65 CGCCTTCG-TTTAAAGGA--TTTTAAAAGACACGAGTGAAA-TTTGAAGGGATATTCAATTATTT
86591848 TAAGC
126 TAAGC
* * * *
86591853 AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCCACGAGTTGCCAAATATCGCACATC
1 AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCCACGAATCGCCAAACACCGCACATC
* * * * *
86591918 GCCTTCGTTTAAGGGATTTTAAAAGACATGAGTGAAATTTGAAGTGATATTCGATTATTTTGAGC
66 GCCTTCGTTTAAAGGATTTTAAAAGACACGAGTGAAATTTGAAGGGATATTCAATTATTTTAAGC
* *
86591983 AAACGCGAAATT-GCAGCCCAACACGTTAGGGCACGATTCCACGAAT
1 AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCCACGAAT
86592029 TTCCAAATAT
Statistics
Matches: 150, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
129 32 0.21
130 34 0.23
131 18 0.12
132 10 0.07
133 33 0.22
134 22 0.15
135 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (130 bp):
AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCCACGAATCGCCAAACACCGCACATC
GCCTTCGTTTAAAGGATTTTAAAAGACACGAGTGAAATTTGAAGGGATATTCAATTATTTTAAGC
Found at i:86591993 original size:130 final size:133
Alignment explanation
Indices: 86591697--86592039 Score: 378
Period size: 129 Copynumber: 2.6 Consensus size: 133
86591687 TGAAAGCCTA
* * * * * *
86591697 AAGGAATATTCGATTGTTTTGA-CTAAACGAGAAA-TCACAACCCAGCACGATAGGGCATGATTC
1 AAGGGATATTCGATTATTTTGAGC-AAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTC
* * * * * * * *
86591760 C-CGAATCGTCAAACACCGAGTATCGCCTTCGTTTTAAATGATTTTTTAGAAGATACGAGTGAAA
65 CACGAATTGCCAAATATCGAGCATCGCCTTCGTTTTAAAGGA-TTTTTAAAAGACACGAGTGAAA
86591824 TTTTG
129 TTTTG
* ** *
86591829 AGGGGATATTTAATTATTTTAAGCAAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCC
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCC
* * *
86591894 ACGAGTTGCCAAATATCGCA-CATCGCCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAA-
66 ACGAATTGCCAAATATCG-AGCATCGCCTTCGTTTTAAAGGATTTTTAAAAGACACGAGTGAAAT
86591955 TTTG
130 TTTG
* * *
86591959 AAGTGATATTCGATTATTTTGAGCAAACGCGAAATT-GCAGCCCAACACGTTAGGGCACGATTCC
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCC
*
86592023 ACGAATTTCCAAATATC
66 ACGAATTGCCAAATATC
86592040 AAATCTCGTC
Statistics
Matches: 177, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
129 42 0.24
130 34 0.19
131 18 0.10
132 26 0.15
133 34 0.19
134 22 0.12
135 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (133 bp):
AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTCGCAACCCAACACGTTAGGGCACGATTCC
ACGAATTGCCAAATATCGAGCATCGCCTTCGTTTTAAAGGATTTTTAAAAGACACGAGTGAAATT
TTG
Found at i:86592833 original size:13 final size:13
Alignment explanation
Indices: 86592815--86592852 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
86592805 AACTTTATGC
86592815 AAAACATATGTAT
1 AAAACATATGTAT
86592828 AAAACATATGTAT
1 AAAACATATGTAT
86592841 AAAACATATGTA
1 AAAACATATGTA
86592853 AACTTTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (13 bp):
AAAACATATGTAT
Found at i:86595578 original size:19 final size:19
Alignment explanation
Indices: 86595554--86595593 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
86595544 AAATAAATTT
*
86595554 AATTAA-CTCAATGCAAATG
1 AATTAACCTAAATGC-AATG
86595573 AATTAACCTAAATGCAATG
1 AATTAACCTAAATGCAATG
86595592 AA
1 AA
86595594 ATAGTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (19 bp):
AATTAACCTAAATGCAATG
Found at i:86603072 original size:14 final size:13
Alignment explanation
Indices: 86603053--86603083 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
86603043 ATTTAACAGC
86603053 AATTTCACAAATG
1 AATTTCACAAATG
86603066 TAATTTCACAAATG
1 -AATTTCACAAATG
86603080 AATT
1 AATT
86603084 AACCTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (13 bp):
AATTTCACAAATG
Found at i:86610536 original size:27 final size:28
Alignment explanation
Indices: 86610506--86610574 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
86610496 ATAGTAAGTC
*
86610506 CGCACACTTAGTGC-ATA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
86610533 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
86610561 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86610575 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 14 0.37
28 23 0.61
29 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:86617533 original size:27 final size:28
Alignment explanation
Indices: 86617503--86617571 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
86617493 ATAGTAAGTC
*
86617503 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
86617530 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
86617558 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86617572 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:86622621 original size:35 final size:33
Alignment explanation
Indices: 86622591--86622760 Score: 198
Period size: 35 Copynumber: 4.9 Consensus size: 33
86622581 TAACACGATG
86622591 ATGCTCATAAGAGATAATCCAACCGAAACACGCCA
1 ATGCTCATAAGAGATAATCCAACCGAAACA--CCA
* * * *
86622626 ATGCTCACAAAAGATAATGCAACCATAACACACCA
1 ATGCTCATAAGAGATAATCCAACC-GAA-ACACCA
*
86622661 ATGCTCATAAGAGCTAATCCAACCGTAACACACCA
1 ATGCTCATAAGAGATAATCCAACCG-AA-ACACCA
86622696 ATGCTCATAAGA-ACTAATCCAACCGTAACACACCA
1 ATGCTCATAAGAGA-TAATCCAACCG-AA-ACACCA
*
86622731 ATGCTCATAAGAGCTAATCCAACCGAAACA
1 ATGCTCATAAGAGATAATCCAACCGAAACA
86622761 TGCCAGATAA
Statistics
Matches: 119, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
33 3 0.03
34 2 0.02
35 109 0.92
36 2 0.02
37 3 0.03
ACGTcount: A:0.44, C:0.29, G:0.11, T:0.16
Consensus pattern (33 bp):
ATGCTCATAAGAGATAATCCAACCGAAACACCA
Found at i:86622691 original size:70 final size:70
Alignment explanation
Indices: 86622591--86622765 Score: 262
Period size: 70 Copynumber: 2.5 Consensus size: 70
86622581 TAACACGATG
* *
86622591 ATGCTCATAAGAGATAATCCAACCGAAACACGCCAATGCTCACAA-AAGATAATGCAACCATAAC
1 ATGCTCATAAGAGCTAATCCAACCGAAACACGCCAATGCTCACAAGAA-ATAATCCAACCATAAC
86622655 ACACCA
65 ACACCA
* * * * *
86622661 ATGCTCATAAGAGCTAATCCAACCGTAACACACCAATGCTCATAAGAACTAATCCAACCGTAACA
1 ATGCTCATAAGAGCTAATCCAACCGAAACACGCCAATGCTCACAAGAAATAATCCAACCATAACA
86622726 CACCA
66 CACCA
*
86622731 ATGCTCATAAGAGCTAATCCAACCGAAACATGCCA
1 ATGCTCATAAGAGCTAATCCAACCGAAACACGCCA
86622766 GATAAAGAGT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
70 92 0.98
71 2 0.02
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (70 bp):
ATGCTCATAAGAGCTAATCCAACCGAAACACGCCAATGCTCACAAGAAATAATCCAACCATAACA
CACCA
Found at i:86625840 original size:11 final size:11
Alignment explanation
Indices: 86625770--86625850 Score: 60
Period size: 11 Copynumber: 7.5 Consensus size: 11
86625760 AAAAATGAGT
86625770 GAATTGAGA-A
1 GAATTGAGAGA
* *
86625780 -AATCGAGTGA
1 GAATTGAGAGA
*
86625790 GAATTAAGAGA
1 GAATTGAGAGA
*
86625801 GAATTGAGGGA
1 GAATTGAGAGA
*
86625812 GGATTGAGA-A
1 GAATTGAGAGA
86625822 GGAATTGAGAGA
1 -GAATTGAGAGA
* * *
86625834 GAGTTGAAAGT
1 GAATTGAGAGA
86625845 GAATTG
1 GAATTG
86625851 TGGGTGAATT
Statistics
Matches: 53, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
9 6 0.11
10 2 0.04
11 44 0.83
12 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.36, T:0.21
Consensus pattern (11 bp):
GAATTGAGAGA
Found at i:86631239 original size:47 final size:47
Alignment explanation
Indices: 86631180--86631276 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
86631170 CCTAGCCTCT
*
86631180 TTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
*
86631227 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
86631274 TTT
1 TTT
86631277 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 41 0.87
48 6 0.13
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:86631278 original size:24 final size:24
Alignment explanation
Indices: 86631159--86631277 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
86631149 GCTTTATCAT
*
86631159 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
86631184 GTAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
86631208 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86631231 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
86631255 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86631278 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 24 0.28
24 49 0.57
25 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86631354 original size:20 final size:20
Alignment explanation
Indices: 86631331--86631393 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
86631321 GAACATCTTG
86631331 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86631351 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
86631371 TGTGCACATCATACATATCA
1 TGTGCATATCATACATATCA
86631391 TGT
1 TGT
86631394 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86631458 original size:25 final size:25
Alignment explanation
Indices: 86631430--86631477 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86631420 ATATATAAAC
* * *
86631430 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86631455 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86631478 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86633816 original size:29 final size:29
Alignment explanation
Indices: 86633782--86633913 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
86633772 TACTCGATTT
** * *
86633782 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
86633811 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
86633840 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
86633869 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86633898 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86633914 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86636748 original size:40 final size:39
Alignment explanation
Indices: 86636580--86636750 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
86636570 AGAAATTGAA
* *
86636580 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
86636620 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
86636660 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
86636700 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
86636740 TGATATCCGGG
1 TGATATCCGGG
86636751 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:86644681 original size:39 final size:40
Alignment explanation
Indices: 86644623--86644723 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
86644613 AAATTGAATG
* *
86644623 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
86644662 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
86644702 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
86644724 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:86644716 original size:40 final size:40
Alignment explanation
Indices: 86644623--86644773 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
86644613 AAATTGAATG
* * * * *
86644623 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
86644662 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
86644702 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
86644742 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
86644774 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:86644788 original size:40 final size:38
Alignment explanation
Indices: 86644619--86644790 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
86644609 TGAGAAATTG
* *
86644619 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
86644658 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
86644695 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
86644735 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
86644775 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
86644791 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:86652617 original size:29 final size:29
Alignment explanation
Indices: 86652583--86652714 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
86652573 TACTCGATTT
** * *
86652583 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
86652612 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
86652641 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
86652670 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86652699 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86652715 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86660478 original size:40 final size:40
Alignment explanation
Indices: 86660423--86660586 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
86660413 TGAATGATAC
* * *
86660423 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
86660463 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
86660503 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
86660543 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
86660583 CCGG
1 CCGG
86660587 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:86668217 original size:40 final size:40
Alignment explanation
Indices: 86668162--86668323 Score: 184
Period size: 40 Copynumber: 4.0 Consensus size: 40
86668152 AATGATACCT
* * *
86668162 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
*
86668202 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATATCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATATCC
* * ** *
86668242 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
* * *
86668282 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
86668322 GG
1 GG
86668324 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
Found at i:86672355 original size:47 final size:47
Alignment explanation
Indices: 86672296--86672392 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
86672286 TCTAGCCTCT
* *
86672296 TTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTAGGGCATAAGCCC
*
86672343 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
86672390 TTT
1 TTT
86672393 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 40 0.87
48 6 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
Found at i:86672394 original size:24 final size:24
Alignment explanation
Indices: 86672289--86672393 Score: 151
Period size: 24 Copynumber: 4.4 Consensus size: 24
86672279 CTGGAGGTCT
*
86672289 AGCCTCTTTTAGTAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
86672313 AGCCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
86672338 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
86672361 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
86672385 AGCCCTTTT
1 AGCCCTTTT
86672394 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 24 0.32
24 45 0.60
25 6 0.08
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Done.