Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 28 of 425
Found at i:7206600 original size:75 final size:75
Alignment explanation
Indices: 7206398--7207007 Score: 789
Period size: 75 Copynumber: 8.3 Consensus size: 75
7206388 AATTTTCGTT
* * * * *
7206398 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7206462 CGCTGAGGTA
66 CGCTGAGGTA
* * *
7206472 ATTTCAATTT-T-TTTTGTC--AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGTTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
7206533 ACGTTGAGGTA
65 ACGCTGAGGTA
* * *
7206544 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7206609 CGCTGAGGTA
66 CGCTGAGGTA
* * * *
7206619 ATTTCAATTTTTGTTTGTC--AAAAATCAACT-ATATTGTGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7206681 CGTTGAGGTA
66 CGCTGAGGTA
* * * *
7206691 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7206756 CGTTGAGGTA
66 CGCTGAGGTA
* *
7206766 TTTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
7206829 ACGCTGAGGTA
65 ACGCTGAGGTA
* * *
7206840 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7206903 CGTTGAGGTA
66 CGCTGAGGTA
* * *
7206913 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
7206976 ACGCTGAGGTG
65 ACGCTGAGGTA
* *
7206987 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
7207008 TTTCTGTGTT
Statistics
Matches: 469, Mismatches: 52, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
71 39 0.08
72 113 0.24
73 48 0.10
74 68 0.14
75 117 0.25
76 84 0.18
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTA
Found at i:7206884 original size:222 final size:223
Alignment explanation
Indices: 7206418--7207001 Score: 932
Period size: 222 Copynumber: 2.6 Consensus size: 223
7206408 ATGTTTCTAA
* * * *
7206418 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*** * * * *
7206482 T-T-TTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
* *
7206545 TTTCAATTTCT-ATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
131 TTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-GACA
7206609 CGCTGAGGTAATTTCAATTTTTGTTTGTC
195 CGCTGAGGTAATTTCAATTTTTGTTTGTC
*
7206638 AAAAATCAACT-ATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
7206702 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
66 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
*
7206767 TTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGAC
131 TTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACAC
7206831 GCTGAGGTAATTTCAATTTTTGTTTGTC
196 GCTGAGGTAATTTCAATTTTTGTTTGTC
7206859 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
7206924 TGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTG
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
*
7206987 TTTTCCATTTCTGTT
130 TTTTCAATTTCTGTT
7207002 CTTCAATTTC
Statistics
Matches: 339, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
219 47 0.14
220 12 0.04
221 66 0.19
222 124 0.37
223 90 0.27
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (223 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
TTTCAATTTCTGTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACAC
GCTGAGGTAATTTCAATTTTTGTTTGTC
Found at i:7207097 original size:14 final size:14
Alignment explanation
Indices: 7207078--7207113 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7207068 CGCTGAGGTA
7207078 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
7207092 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
7207106 TTTTCAAA
1 TTTTCAAA
7207114 AAATCAACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:7207227 original size:90 final size:89
Alignment explanation
Indices: 7206913--7207265 Score: 394
Period size: 90 Copynumber: 3.9 Consensus size: 89
7206903 CGTTGAGGTA
* *
7206913 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCAC
* *
7206976 ACGCTGAGGTGTTTTCCATTTCTGT
65 ACGCTGAGGTATTTTCAATTTCTGT
* * * * * * *
7207001 TCTTCAATTTCTGTGTTTAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAACCTTGACTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC-TCA-GCA
*
7207066 CACGCTGAGGTATTTTCAAATTCTGT
64 CACGCTGAGGTATTTTCAATTTCTGT
* * * * *
7207092 TTTTCAAATTT-TGTTTTTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGGAC
1 TTTTC-AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCAC
* * *
7207155 ACGCTGAGATATTTTCAATTTATTTT
65 ACGCTGAGGTATTTTCAATTT-CTGT
*
7207181 TTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-ACCTCAGATC
1 TTTTCAATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAG--C
*
7207244 ACACGCCGAGGTATTTTCAATT
63 ACACGCTGAGGTATTTTCAATT
7207266 GATTTTTATT
Statistics
Matches: 224, Mismatches: 30, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
87 37 0.17
88 46 0.21
89 20 0.09
90 63 0.28
91 53 0.24
92 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCACA
CGCTGAGGTATTTTCAATTTCTGT
Found at i:7207258 original size:179 final size:177
Alignment explanation
Indices: 7206934--7207263 Score: 441
Period size: 180 Copynumber: 1.9 Consensus size: 177
7206924 TGTCTTTCAA
* * * * * * *
7206934 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCT
1 AAAAAATCAACTCATATTACGAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
* * * *
7206999 GTTCTTCAATTTCTGTGTTTAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAACCTTGACT
66 GTTCTTCAATTTATGTGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTAGACT
*
7207064 CACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTC
131 CACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTC
*
7207111 AAAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTACGAGAGGTGAGTTCAACCTCA--ACACGCTGAGATATTTTCAATTT
* * * *
7207176 ATTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-ACCTC
64 -CTGTTCTTCAATTTATGTGTT-TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT-
7207239 AGA-TCACACGCCGAGGTATTTTCAA
126 AGACTCACACGCCGAGGTATTTTCAA
7207264 TTGATTTTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
177 36 0.27
179 46 0.35
180 49 0.37
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (177 bp):
AAAAAATCAACTCATATTACGAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
GTTCTTCAATTTATGTGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTAGACT
CACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTC
Found at i:7207364 original size:102 final size:101
Alignment explanation
Indices: 7207173--7207365 Score: 273
Period size: 101 Copynumber: 1.9 Consensus size: 101
7207163 ATATTTTCAA
* *
7207173 TTTATTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCT
1 TTTATTTTTTTTCAATTTATGTTTGTC--AAAAATCAACTCATATTACAAGAGGTGAGTTGACCT
*
7207238 CAGATCACACGCCGAGGTATTTTCAATTGATTTTTATT
64 CAGATCACACACCGAGGTATTTTCAATTGATTTTTATT
7207276 TTTATTTTTTTTTCAATTTATGCTTTG-C-AAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
1 TTTA-TTTTTTTTCAATTTATG-TTTGTCAAAAATCAACTCATATTACAAGAGGTGAGTTGA-CC
* * *
7207339 TCAGGTCACATACTGAGGTATTTTCAA
63 TCAGATCACACACCGAGGTATTTTCAA
7207366 AATCTGTTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
101 30 0.37
102 25 0.31
103 4 0.05
104 18 0.22
105 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (101 bp):
TTTATTTTTTTTCAATTTATGTTTGTCAAAAATCAACTCATATTACAAGAGGTGAGTTGACCTCA
GATCACACACCGAGGTATTTTCAATTGATTTTTATT
Found at i:7207450 original size:87 final size:87
Alignment explanation
Indices: 7207304--7207516 Score: 227
Period size: 87 Copynumber: 2.4 Consensus size: 87
7207294 TATGCTTTGC
* * *
7207304 AAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAGGTCACATACTGAGGTATTTTCAAAAT
1 AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGTCACATACTGAGCTATTTTCAAAAT
7207369 CTGTTTTACAAAT-TTT-GTTTTA
66 CTGTTTT--AAATGTTTAGTTTTA
* * * * **
7207391 AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCT-TGGCTTACGTGCTGAGCTATTTTCAATT
1 AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGG-TCACATACTGAGCTATTTTCAAAA
*
7207455 TCTGTTTTTAATGTTTAGTTTTA
65 TCTGTTTTAAATGTTTAGTTTTA
* * * * *
7207478 AAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAG
1 AA-AATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAG
7207517 CATCACATGC
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
85 3 0.03
86 5 0.05
87 70 0.67
88 27 0.26
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (87 bp):
AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGTCACATACTGAGCTATTTTCAAAAT
CTGTTTTAAATGTTTAGTTTTA
Found at i:7208178 original size:18 final size:18
Alignment explanation
Indices: 7208155--7208208 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
7208145 CTACCACCAA
7208155 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
7208173 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
7208185 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
7208203 CTCCAC
1 CTCCAC
7208209 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:7208188 original size:30 final size:30
Alignment explanation
Indices: 7208147--7208242 Score: 174
Period size: 30 Copynumber: 3.2 Consensus size: 30
7208137 AGCCATTGCT
*
7208147 ACCACCAACTCCACTAGCCACACTTGCTCC
1 ACCACCTACTCCACTAGCCACACTTGCTCC
7208177 ACCACCTACTCCACTAGCCACACTTGCTCC
1 ACCACCTACTCCACTAGCCACACTTGCTCC
*
7208207 ACCACCTACTCCATTAGCCACACTTGCTCC
1 ACCACCTACTCCACTAGCCACACTTGCTCC
7208237 ACCACC
1 ACCACC
7208243 ACTTGTACCT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.25, C:0.50, G:0.06, T:0.19
Consensus pattern (30 bp):
ACCACCTACTCCACTAGCCACACTTGCTCC
Found at i:7219333 original size:15 final size:15
Alignment explanation
Indices: 7219313--7219363 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 15
7219303 ACTATAAAAC
7219313 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
7219328 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
7219347 ATTTATTATTAA-AT
1 ATTTATTATTAATAT
7219361 ATT
1 ATT
7219364 AATATTGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:7219427 original size:16 final size:16
Alignment explanation
Indices: 7219396--7219432 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7219386 ATGTGAATAA
7219396 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
7219412 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
7219428 TATTA
1 TATTA
7219433 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:7219473 original size:20 final size:22
Alignment explanation
Indices: 7219444--7219485 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
7219434 AATAAAATTG
*
7219444 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
7219464 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
7219486 TATGAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:7222693 original size:20 final size:22
Alignment explanation
Indices: 7222648--7222697 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
7222638 AAAGTTTTAA
*
7222648 AATTTTTATGAATTTTGCTTAT
1 AATTTTTATGAATTTTGCTAAT
7222670 AATTTTTATG-ATTTT-CTAAT
1 AATTTTTATGAATTTTGCTAAT
7222690 AATTTTTA
1 AATTTTTA
7222698 AAATTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 12 0.44
21 5 0.19
22 10 0.37
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (22 bp):
AATTTTTATGAATTTTGCTAAT
Found at i:7222703 original size:20 final size:21
Alignment explanation
Indices: 7222648--7222703 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
7222638 AAAGTTTTAA
* *
7222648 AATTTTTATGAATTTTGCTTAT
1 AATTTTTA-AAATTTTGCTAAT
**
7222670 AATTTTTATGATTTT-CTAAT
1 AATTTTTAAAATTTTGCTAAT
7222690 AATTTTTAAAATTT
1 AATTTTTAAAATTT
7222704 AAAAGAGCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 16 0.55
21 5 0.17
22 8 0.28
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (21 bp):
AATTTTTAAAATTTTGCTAAT
Found at i:7223532 original size:15 final size:16
Alignment explanation
Indices: 7223505--7223535 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7223495 CCATTAAAAA
7223505 TATATTAAAAAATATT
1 TATATTAAAAAATATT
7223521 TATATT-AAAAATATT
1 TATATTAAAAAATATT
7223536 ACCATAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TATATTAAAAAATATT
Found at i:7223813 original size:20 final size:20
Alignment explanation
Indices: 7223788--7223882 Score: 53
Period size: 20 Copynumber: 5.1 Consensus size: 20
7223778 AGAGTAATTA
7223788 AAAATTGTATAAAATTATTT
1 AAAATTGTATAAAATTATTT
*
7223808 AAAATT-TA-AAAA--AATT
1 AAAATTGTATAAAATTATTT
* * *
7223824 AAAA-TATA-AAAATTGTTA
1 AAAATTGTATAAAATTATTT
* *
7223842 AAAATTGT-TAAAAGTTGTTA
1 AAAATTGTATAAAA-TTATTT
* *
7223862 AAAATGGT-TAAAAATATTT
1 AAAATTGTATAAAATTATTT
7223881 AA
1 AA
7223883 TTTTTTGAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
15 1 0.02
16 13 0.22
18 9 0.15
19 13 0.22
20 24 0.40
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
AAAATTGTATAAAATTATTT
Found at i:7223845 original size:10 final size:10
Alignment explanation
Indices: 7223830--7223876 Score: 76
Period size: 10 Copynumber: 4.7 Consensus size: 10
7223820 AATTAAAATA
7223830 TAAAAATTGT
1 TAAAAATTGT
7223840 TAAAAATTGT
1 TAAAAATTGT
*
7223850 TAAAAGTTGT
1 TAAAAATTGT
*
7223860 TAAAAATGGT
1 TAAAAATTGT
7223870 TAAAAAT
1 TAAAAAT
7223877 ATTTAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (10 bp):
TAAAAATTGT
Found at i:7224940 original size:10 final size:10
Alignment explanation
Indices: 7224921--7224952 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
7224911 AAAAAAAATA
7224921 TAAT-TTTTT
1 TAATATTTTT
7224930 TAATATTTTT
1 TAATATTTTT
7224940 TAATATTTTT
1 TAATATTTTT
7224950 TAA
1 TAA
7224953 ACTTTAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TAATATTTTT
Found at i:7226579 original size:18 final size:18
Alignment explanation
Indices: 7226556--7226615 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
7226546 TTTTCTAATT
7226556 TTTTTTATTTGTTTTCCA
1 TTTTTTATTTGTTTTCCA
*
7226574 TTTTTT-TCCT-TTTTCTCA
1 TTTTTTAT-TTGTTTTC-CA
7226592 TTTTTTTATTTGTTTGTCC-
1 -TTTTTTATTTGTTT-TCCA
7226611 TTTTT
1 TTTTT
7226616 CTTTTTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
17 6 0.18
18 14 0.41
19 7 0.21
20 5 0.15
21 2 0.06
ACGTcount: A:0.07, C:0.13, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTTTATTTGTTTTCCA
Found at i:7226579 original size:19 final size:19
Alignment explanation
Indices: 7226555--7226615 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
7226545 TTTTTCTAAT
7226555 TTTTTTTATTTGTTTTCCA
1 TTTTTTTATTTGTTTTCCA
**
7226574 TTTTTTT-CCT-TTTTCTCA
1 TTTTTTTATTTGTTTTC-CA
7226592 TTTTTTTATTTGTTTGTCC-
1 TTTTTTTATTTGTTT-TCCA
7226611 TTTTT
1 TTTTT
7226616 CTTTTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.15
18 10 0.29
19 13 0.38
20 4 0.12
21 2 0.06
ACGTcount: A:0.07, C:0.13, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTTTTATTTGTTTTCCA
Found at i:7226598 original size:28 final size:29
Alignment explanation
Indices: 7226562--7226617 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
7226552 AATTTTTTTT
7226562 ATTTGTTTTCCATTT-TTT-TCCTTTTTCTC
1 ATTTGTTTT--ATTTGTTTGTCCTTTTTCTC
7226591 ATTT-TTTTATTTGTTTGTCCTTTTTCT
1 ATTTGTTTTATTTGTTTGTCCTTTTTCT
7226618 TTTTTTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.16
27 3 0.12
28 14 0.56
29 4 0.16
ACGTcount: A:0.07, C:0.16, G:0.05, T:0.71
Consensus pattern (29 bp):
ATTTGTTTTATTTGTTTGTCCTTTTTCTC
Found at i:7226605 original size:37 final size:38
Alignment explanation
Indices: 7226543--7226615 Score: 114
Period size: 37 Copynumber: 1.9 Consensus size: 38
7226533 TATCCAACAC
7226543 CCTTTTTCTAATTTTTTTTATTTGTTT-TCCATTTTTTT
1 CCTTTTTCTAATTTTTTTTATTTGTTTGTCC-TTTTTTT
*
7226581 CCTTTTTCTCA-TTTTTTTATTTGTTTGTCCTTTTT
1 CCTTTTTCTAATTTTTTTTATTTGTTTGTCCTTTTT
7226616 CTTTTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 20 0.61
38 13 0.39
ACGTcount: A:0.08, C:0.15, G:0.04, T:0.73
Consensus pattern (38 bp):
CCTTTTTCTAATTTTTTTTATTTGTTTGTCCTTTTTTT
Found at i:7226626 original size:25 final size:24
Alignment explanation
Indices: 7226577--7226639 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
7226567 TTTTCCATTT
*
7226577 TTTTCCTTTTTCTCATTTTTTTATTTG
1 TTTTCC-TTTT-TC-TTTTTTTATTCG
7226604 TTTGTCCTTTTTCTTTTTTTATTCG
1 TTT-TCCTTTTTCTTTTTTTATTCG
*
7226629 TTTTCTTTTTT
1 TTTTCCTTTTT
7226640 TTAACTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 14 0.42
26 2 0.06
27 7 0.21
28 3 0.09
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.76
Consensus pattern (24 bp):
TTTTCCTTTTTCTTTTTTTATTCG
Found at i:7226649 original size:17 final size:17
Alignment explanation
Indices: 7226610--7226660 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
7226600 TTTGTTTGTC
*
7226610 CTTTTTCTTTTTTTATT
1 CTTTTTCTTTTTTTATA
*
7226627 CGTTTTCTTTTTTT-TAA
1 CTTTTTCTTTTTTTAT-A
*
7226644 CTTTTTCAGTTTTTTAT
1 CTTTTTC-TTTTTTTAT
7226661 TTATTTGTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 1 0.04
17 19 0.70
18 6 0.22
19 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.04, T:0.75
Consensus pattern (17 bp):
CTTTTTCTTTTTTTATA
Found at i:7226659 original size:60 final size:64
Alignment explanation
Indices: 7226555--7226688 Score: 170
Period size: 62 Copynumber: 2.2 Consensus size: 64
7226545 TTTTTCTAAT
* * * *
7226555 TTTTTTTATTTGTTTTCCATTTTTTTCCTTTTTCTCATTTTTTTATTTGTTTGTCC-TT-TTTC
1 TTTTTTTATTCGTTTTCCATTTTTTTACTTTTTCTCAGTTTTTTATTTATTTGTCCTTTATTTC
* *
7226617 TTTTTTTATTCGTTTT-CTTTTTTTTAAC-TTTT-TCAGTTTTTTATTTATTTGTCCTTTATTTG
1 TTTTTTTATTCGTTTTCCATTTTTTT-ACTTTTTCTCAGTTTTTTATTTATTTGTCCTTTATTTC
7226679 TTTTTTTATT
1 TTTTTTTATT
7226689 TATTTGTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
60 20 0.32
61 14 0.22
62 29 0.46
ACGTcount: A:0.09, C:0.11, G:0.05, T:0.75
Consensus pattern (64 bp):
TTTTTTTATTCGTTTTCCATTTTTTTACTTTTTCTCAGTTTTTTATTTATTTGTCCTTTATTTC
Found at i:7226690 original size:27 final size:27
Alignment explanation
Indices: 7226653--7226709 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
7226643 ACTTTTTCAG
*
7226653 TTTTTTATTTATTTGTCCTTTATTTGT
1 TTTTTTATTTATTTGTCCTTTATTTAT
7226680 TTTTTTATTTATTTGTCCTTTATTTAT
1 TTTTTTATTTATTTGTCCTTTATTTAT
7226707 TTT
1 TTT
7226710 ATAATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.75
Consensus pattern (27 bp):
TTTTTTATTTATTTGTCCTTTATTTAT
Found at i:7226692 original size:16 final size:15
Alignment explanation
Indices: 7226656--7226708 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
7226646 TTTTCAGTTT
7226656 TTTATTTATTTGTCC
1 TTTATTTATTTGTCC
*
7226671 TTTATTTGTTT-T--
1 TTTATTTATTTGTCC
7226683 TTTATTTATTTGTCC
1 TTTATTTATTTGTCC
7226698 TTTATTTATTT
1 TTTATTTATTT
7226709 TATAATATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 10 0.30
13 1 0.03
14 1 0.03
15 21 0.64
ACGTcount: A:0.13, C:0.08, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTGTCC
Found at i:7226732 original size:24 final size:23
Alignment explanation
Indices: 7226704--7226779 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
7226694 GTCCTTTATT
7226704 TATTTTATAATATTTTAAATATA
1 TATTTTATAATATTTTAAATATA
* *
7226727 TAATTTA-AATGTTTTATAATAT-
1 TATTTTATAATATTTTA-AATATA
* * *
7226749 TATTTTTTAAAAAATTTAAATATA
1 TATTTTAT-AATATTTTAAATATA
*
7226773 TTTTTTA
1 TATTTTA
7226780 AATTATTATT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
22 13 0.32
23 16 0.40
24 11 0.28
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (23 bp):
TATTTTATAATATTTTAAATATA
Found at i:7226791 original size:15 final size:13
Alignment explanation
Indices: 7226763--7226802 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
7226753 TTTTAAAAAA
7226763 TTTAAATATATTT
1 TTTAAATATATTT
7226776 TTTAAATTATTATTT
1 TTTAAA-TA-TATTT
*
7226791 TTTAAAGATATT
1 TTTAAATATATT
7226803 CAAATGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.42
14 3 0.12
15 11 0.46
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (13 bp):
TTTAAATATATTT
Found at i:7232034 original size:22 final size:22
Alignment explanation
Indices: 7232008--7232053 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
7231998 TAATACATAG
7232008 AGTTTTACATATAATATAAACT
1 AGTTTTACATATAATATAAACT
7232030 AGTTTTACATATAATATAAACT
1 AGTTTTACATATAATATAAACT
7232052 AG
1 AG
7232054 ACATATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (22 bp):
AGTTTTACATATAATATAAACT
Found at i:7233292 original size:11 final size:11
Alignment explanation
Indices: 7233258--7233311 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
7233248 AAAATATTAT
7233258 AAAACAAAT-A
1 AAAACAAATAA
* *
7233268 AAGA-AAAGAA
1 AAAACAAATAA
7233278 AAAACAAATAA
1 AAAACAAATAA
7233289 AAAACAAATAA
1 AAAACAAATAA
**
7233300 AGGACAAATAA
1 AAAACAAATAA
7233311 A
1 A
7233312 TAAATAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
9 3 0.08
10 7 0.19
11 26 0.72
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAACAAATAA
Found at i:7233369 original size:62 final size:61
Alignment explanation
Indices: 7233271--7233420 Score: 178
Period size: 60 Copynumber: 2.4 Consensus size: 61
7233261 ACAAATAAAG
* * *
7233271 AAAAGAAAAAACAAATAAAAAACAAATAAAGGACAAATAAATAAATAAAAACTGAAAAAGTAAA
1 AAAAG-AAAAACAAATAAAAAACAAATAAAGGACAAACAAAT-AA-AAAAACAGAAAAAGGAAA
* ** * *
7233335 TAAAGAAAAACAAATAAAAATGAAA-AAAGGACAAACAAATAAAAAATCAGAGAAAGGAAA
1 AAAAGAAAAACAAATAAAAAACAAATAAAGGACAAACAAATAAAAAAACAGAAAAAGGAAA
7233395 AAAATGAAAAACAAATAAAAAA-AAAT
1 AAAA-GAAAAACAAATAAAAAACAAAT
7233421 CAGGAAAAGG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
60 20 0.27
61 18 0.24
62 14 0.19
63 18 0.24
64 4 0.05
ACGTcount: A:0.75, C:0.06, G:0.09, T:0.10
Consensus pattern (61 bp):
AAAAGAAAAACAAATAAAAAACAAATAAAGGACAAACAAATAAAAAAACAGAAAAAGGAAA
Found at i:7234401 original size:33 final size:29
Alignment explanation
Indices: 7234340--7234399 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
7234330 GTTAGAGAAA
7234340 ACATGTGCATAAATAAATTCCGTTTACTT
1 ACATGTGCATAAATAAATTCCGTTTACTT
*
7234369 ACATGTGCATAAATAAATTCCGTTTAGTT
1 ACATGTGCATAAATAAATTCCGTTTACTT
7234398 AC
1 AC
7234400 TTTGAAGTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (29 bp):
ACATGTGCATAAATAAATTCCGTTTACTT
Found at i:7235746 original size:23 final size:25
Alignment explanation
Indices: 7235719--7235773 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
7235709 AATATTTACG
*
7235719 AAGTTAAGTG-AGTG-ATTAATTTA
1 AAGTTAAGTGAAGTGAATTAACTTA
7235742 AAGTTTAA-TGAAGTGAATTAACTTA
1 AAG-TTAAGTGAAGTGAATTAACTTA
7235767 AA-TTAAG
1 AAGTTAAG
7235774 GATAATTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
23 9 0.33
24 8 0.30
25 10 0.37
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (25 bp):
AAGTTAAGTGAAGTGAATTAACTTA
Found at i:7236231 original size:17 final size:19
Alignment explanation
Indices: 7236211--7236248 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7236201 CAGGGGAAGG
7236211 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
7236228 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
7236247 AA
1 AA
7236249 ATTAAAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:7238943 original size:15 final size:15
Alignment explanation
Indices: 7238918--7238961 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7238908 TTGCCCGGGT
*
7238918 TAAAAAGCCCAACATC
1 TAAAAA-CCCAACAGC
7238934 TAAAAACCCAACAGC
1 TAAAAACCCAACAGC
**
7238949 CCAAAACCCAACA
1 TAAAAACCCAACA
7238962 ACCTCCAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.52, C:0.36, G:0.05, T:0.07
Consensus pattern (15 bp):
TAAAAACCCAACAGC
Found at i:7238982 original size:17 final size:17
Alignment explanation
Indices: 7238936--7238976 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
7238926 CCAACATCTA
*
7238936 AAAACCCAAC-AGC-CC
1 AAAACCCAACAACCTCC
7238951 AAAACCCAACAACCTCC
1 AAAACCCAACAACCTCC
*
7238968 AAAGCCCAA
1 AAAACCCAA
7238977 TCACCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 2 0.09
17 10 0.45
ACGTcount: A:0.49, C:0.44, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAACCCAACAACCTCC
Found at i:7239063 original size:13 final size:13
Alignment explanation
Indices: 7239045--7239137 Score: 94
Period size: 13 Copynumber: 7.8 Consensus size: 13
7239035 TCTTCACGCC
7239045 AACCACCCCACTA
1 AACCACCCCACTA
*
7239058 AACCACTCCACTA
1 AACCACCCCACTA
*
7239071 AACCA-CTC-C--
1 AACCACCCCACTA
7239080 AACCACCCCACTA
1 AACCACCCCACTA
7239093 AACCA-CCC-C--
1 AACCACCCCACTA
7239102 AACCACCCCACTA
1 AACCACCCCACTA
*
7239115 AACCACTCCACTA
1 AACCACCCCACTA
*
7239128 AACCATCCCA
1 AACCACCCCA
7239138 ACCACTCCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
9 10 0.15
10 5 0.08
11 4 0.06
12 4 0.06
13 42 0.65
ACGTcount: A:0.38, C:0.53, G:0.00, T:0.10
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:7239084 original size:22 final size:22
Alignment explanation
Indices: 7239058--7239124 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
7239048 CACCCCACTA
*
7239058 AACCACTCCACTAAACCACTCC
1 AACCACCCCACTAAACCACTCC
*
7239080 AACCACCCCACTAAACCACCCC
1 AACCACCCCACTAAACCACTCC
7239102 AACCACCCCACTAAACCACTCC
1 AACCACCCCACTAAACCACTCC
7239124 A
1 A
7239125 CTAAACCATC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.37, C:0.54, G:0.00, T:0.09
Consensus pattern (22 bp):
AACCACCCCACTAAACCACTCC
Found at i:7239119 original size:35 final size:36
Alignment explanation
Indices: 7239045--7239148 Score: 122
Period size: 35 Copynumber: 2.9 Consensus size: 36
7239035 TCTTCACGCC
* * * *
7239045 AACCACCCCACTAAACCACTCC-ACTAAACCACTCC
1 AACCACCCCACTAAACCACCCCAACCACACCACTCA
*
7239080 AACCACCCCACTAAACCACCCCAACCACCCCACT-A
1 AACCACCCCACTAAACCACCCCAACCACACCACTCA
* * *
7239115 AACCACTCCACTAAACCATCCCAACCACTCCACT
1 AACCACCCCACTAAACCACCCCAACCACACCACT
7239149 TGCCTACAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 52 0.87
36 8 0.13
ACGTcount: A:0.37, C:0.53, G:0.00, T:0.11
Consensus pattern (36 bp):
AACCACCCCACTAAACCACCCCAACCACACCACTCA
Found at i:7251726 original size:206 final size:206
Alignment explanation
Indices: 7251362--7252027 Score: 1131
Period size: 206 Copynumber: 3.2 Consensus size: 206
7251352 GATCTGGCCA
* **
7251362 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAAACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAGGACATAGCTGAT
*
7251426 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATCATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
7251491 ACAAGTCGAAGTCTGGCATCTCAATTTCGACAGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCAATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
7251556 TGTTTATACTG
196 TGTTTATACTG
*
7251567 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAATGAGCAAATCGAGGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAGGACATAGCTGAT
*
7251632 TTGGCTTTCGCATGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
7251697 ACAAGTCGAAGTCTGGCATCTCTATTTCGACGGAGAGCAAATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCAATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
7251762 TGTTTATACTG
196 TGTTTATACTG
* *
7251773 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGG-CATAGTTGA
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCG-AGGACATAGCTGA
* * *
7251837 TTTGGTTTTCGTGTGCTTATGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
65 TTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
7251902 AACAAGCCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
130 AACAAGTCGAAGTCTGGCATCTCAATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
7251967 ATGTTTATA-TCG
195 ATGTTTATACT-G
*
7251979 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAAT
7252028 TGAAGAAGCA
Statistics
Matches: 436, Mismatches: 22, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
205 5 0.01
206 428 0.98
207 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAGGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAGTCGAAGTCTGGCATCTCAATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACTG
Found at i:7252385 original size:15 final size:15
Alignment explanation
Indices: 7252358--7252403 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
7252348 TTTTGCCCGG
7252358 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
7252374 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
7252389 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
7252404 ACCTCCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:7252424 original size:17 final size:17
Alignment explanation
Indices: 7252378--7252418 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
7252368 CCAACATCTA
*
7252378 AAAACCCAAC-AGC-CC
1 AAAACCCAACAACCTCC
7252393 AAAACCCAACAACCTCC
1 AAAACCCAACAACCTCC
*
7252410 AAAGCCCAA
1 AAAACCCAA
7252419 TCACCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 2 0.09
17 10 0.45
ACGTcount: A:0.49, C:0.44, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAACCCAACAACCTCC
Found at i:7252506 original size:13 final size:13
Alignment explanation
Indices: 7252488--7252567 Score: 59
Period size: 13 Copynumber: 6.8 Consensus size: 13
7252478 TCTTCACTCC
7252488 AACCACCCCACTA
1 AACCACCCCACTA
*
7252501 AACCA-CTC-C--
1 AACCACCCCACTA
7252510 AACCACCCCACTA
1 AACCACCCCACTA
7252523 AACCA-CCC-C--
1 AACCACCCCACTA
**
7252532 AACCACCCCAGAA
1 AACCACCCCACTA
*
7252545 AACCACTCCACTA
1 AACCACCCCACTA
*
7252558 AACCATCCCA
1 AACCACCCCA
7252568 ACCACTCCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
9 10 0.20
10 5 0.10
11 3 0.06
12 5 0.10
13 28 0.55
ACGTcount: A:0.39, C:0.53, G:0.01, T:0.07
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:7252510 original size:22 final size:22
Alignment explanation
Indices: 7252482--7252554 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
7252472 CAAATATCTT
7252482 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
7252504 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
* **
7252526 CACCCCAACCACCCCAGAAAAC
1 CACTCCAACCACCCCACTAAAC
7252548 CACTCCA
1 CACTCCA
7252555 CTAAACCATC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.37, C:0.55, G:0.01, T:0.07
Consensus pattern (22 bp):
CACTCCAACCACCCCACTAAAC
Found at i:7253052 original size:33 final size:39
Alignment explanation
Indices: 7252974--7253058 Score: 101
Period size: 33 Copynumber: 2.3 Consensus size: 39
7252964 TATTATTTTC
*
7252974 TATTATTATTATTATTATTACTAATACCACTATTATCAT
1 TATTATTACTATTATTATTACTAATACCACTATTATCAT
**
7253013 CGTTATTACTATTA-TATTA-TAATA-C-CT-TT-TCAT
1 TATTATTACTATTATTATTACTAATACCACTATTATCAT
7253046 TATTATTACTATT
1 TATTATTACTATT
7253059 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
33 15 0.37
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 11 0.27
ACGTcount: A:0.33, C:0.13, G:0.01, T:0.53
Consensus pattern (39 bp):
TATTATTACTATTATTATTACTAATACCACTATTATCAT
Found at i:7260286 original size:50 final size:51
Alignment explanation
Indices: 7260209--7260337 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
7260199 GACCATGGCA
*
7260209 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
7260260 A-AAGTGATAAGTGACAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
7260310 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
7260338 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:7260351 original size:31 final size:31
Alignment explanation
Indices: 7260313--7260461 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
7260303 ACAAATGACA
7260313 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7260344 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
7260375 AGTGAAAAGTGGTAGCTCCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
7260406 AGTGAAAAATGGTAGATCCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7260437 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7260462 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7260550 original size:47 final size:47
Alignment explanation
Indices: 7260481--7260692 Score: 179
Period size: 47 Copynumber: 4.6 Consensus size: 47
7260471 GTGATTTCCA
** * *
7260481 TATAAGACCATATTTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTG
* * * *
7260528 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCGTG
1 TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATAC-TG
* *
7260576 TAT--GACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-G
1 TATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TACTG
* * * *
7260623 TGTAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA-TG
1 TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTG
* * *
7260665 TGTAAGATCATAGCTGGGCTATGGCATC
1 TATAAGACCATAGCTGGGATATGGCATC
7260693 ATTATGTGAA
Statistics
Matches: 141, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
42 30 0.21
43 1 0.01
44 5 0.04
45 1 0.01
46 21 0.15
47 42 0.30
48 16 0.11
49 25 0.18
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (47 bp):
TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTG
Found at i:7260635 original size:49 final size:48
Alignment explanation
Indices: 7260530--7260736 Score: 201
Period size: 42 Copynumber: 4.6 Consensus size: 48
7260520 TGCTACTGTA
* * * *
7260530 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
*
7260576 TATGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTG
*
7260625 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
*
7260667 TAAGATCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTCGTG
* **
7260709 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
7260737 GAAAACGAAG
Statistics
Matches: 142, Mismatches: 13, Indels: 15
0.84 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 62 0.44
43 1 0.01
44 1 0.01
45 1 0.01
46 24 0.17
47 1 0.01
48 14 0.10
49 37 0.26
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
Found at i:7262196 original size:13 final size:13
Alignment explanation
Indices: 7262178--7262211 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7262168 ATATTTCAAA
7262178 AATTTTCTAAAAT
1 AATTTTCTAAAAT
* *
7262191 AATTTTTTCAAAT
1 AATTTTCTAAAAT
7262204 AATTTTCT
1 AATTTTCT
7262212 CTCTACAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTTTCTAAAAT
Found at i:7262703 original size:19 final size:20
Alignment explanation
Indices: 7262679--7262719 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7262669 TGACTAGTTA
* *
7262679 TTGGG-TCTCGATCTCAATT
1 TTGGGTTCTCAATCCCAATT
7262698 TTGGGTTCTCAATCCCAATT
1 TTGGGTTCTCAATCCCAATT
7262718 TT
1 TT
7262720 TTATCTCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (20 bp):
TTGGGTTCTCAATCCCAATT
Found at i:7262833 original size:19 final size:19
Alignment explanation
Indices: 7262800--7262839 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7262790 AAAATATCAT
*
7262800 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
7262819 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
7262838 AT
1 AT
7262840 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:7267994 original size:11 final size:11
Alignment explanation
Indices: 7267978--7268004 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7267968 CATTATCTAT
7267978 CAATGGACATC
1 CAATGGACATC
7267989 CAATGGACATC
1 CAATGGACATC
7268000 CAATG
1 CAATG
7268005 AGGCACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (11 bp):
CAATGGACATC
Found at i:7268313 original size:18 final size:18
Alignment explanation
Indices: 7268288--7268329 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7268278 ATTTTTATAA
* *
7268288 AAATAAAATATAATTTTT
1 AAATAAAATAAAACTTTT
*
7268306 ACATAAAATAAAACTTTT
1 AAATAAAATAAAACTTTT
7268324 AAATAA
1 AAATAA
7268330 TTTTGATTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATAAAATAAAACTTTT
Found at i:7268742 original size:14 final size:14
Alignment explanation
Indices: 7268723--7268754 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7268713 TACACTCAAA
*
7268723 TTTTAAATTTTAAT
1 TTTTAAACTTTAAT
7268737 TTTTAAACTTTAAT
1 TTTTAAACTTTAAT
7268751 TTTT
1 TTTT
7268755 TTAGCATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTAAACTTTAAT
Found at i:7269333 original size:17 final size:17
Alignment explanation
Indices: 7269311--7269343 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7269301 TTATAATGTT
7269311 ATTAAT-TAGTCTAAATG
1 ATTAATATAGT-TAAATG
7269328 ATTAATATAGTTAAAT
1 ATTAATATAGTTAAAT
7269344 TTTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (17 bp):
ATTAATATAGTTAAATG
Found at i:7272605 original size:2 final size:2
Alignment explanation
Indices: 7272598--7272623 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7272588 TACATCTCTT
7272598 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7272624 CACACCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7273126 original size:30 final size:31
Alignment explanation
Indices: 7273069--7273129 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
7273059 ATATATGAAC
*
7273069 CTAATGGTTATAAGATTTTAAAAAAAAAAAT
1 CTAATGGTTAGAAGATTTTAAAAAAAAAAAT
*
7273100 CTAATGGTTAGAAGA-TTTAAATAAAAAAAT
1 CTAATGGTTAGAAGATTTTAAAAAAAAAAAT
7273130 TGACCCCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.31
Consensus pattern (31 bp):
CTAATGGTTAGAAGATTTTAAAAAAAAAAAT
Found at i:7277466 original size:21 final size:21
Alignment explanation
Indices: 7277442--7277482 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7277432 ATCTGCTCAA
* *
7277442 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7277463 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7277483 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7286015 original size:20 final size:19
Alignment explanation
Indices: 7285988--7286038 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
7285978 AAAATTAAAA
**
7285988 AATATTTTTTTATAATTTT
1 AATATTTTTAAATAATTTT
7286007 AATACTTTTTAAATAATTTT
1 AATA-TTTTTAAATAATTTT
7286027 AATGATTTTTAA
1 AAT-ATTTTTAA
7286039 TTTTTTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 4 0.14
20 23 0.82
21 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
AATATTTTTAAATAATTTT
Found at i:7290975 original size:19 final size:21
Alignment explanation
Indices: 7290931--7290976 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
7290921 CAATTGTCGA
*
7290931 TTCAATCAAATTTTTAGTTAG
1 TTCAATCAAATTTGTAGTTAG
*
7290952 TTCAATC-AATTTGTA-TTGG
1 TTCAATCAAATTTGTAGTTAG
7290971 TTCAAT
1 TTCAAT
7290977 TAGTCTAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 9 0.39
20 7 0.30
21 7 0.30
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (21 bp):
TTCAATCAAATTTGTAGTTAG
Found at i:7296189 original size:27 final size:28
Alignment explanation
Indices: 7296159--7296228 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
7296149 ATAGTGAGTC
* *
7296159 CGCACACCTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
7296186 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
7296214 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7296229 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:7297941 original size:14 final size:14
Alignment explanation
Indices: 7297902--7297946 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
7297892 AGGCTGTCAC
*
7297902 ATTATATA-CTGAA
1 ATTATATATGTGAA
*
7297915 ATTAAATTATGTGAA
1 ATTATA-TATGTGAA
7297930 ATTATATATGTGAA
1 ATTATATATGTGAA
7297944 ATT
1 ATT
7297947 CGAATGTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 5 0.19
14 13 0.48
15 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (14 bp):
ATTATATATGTGAA
Found at i:7298128 original size:43 final size:41
Alignment explanation
Indices: 7298079--7298193 Score: 135
Period size: 43 Copynumber: 2.8 Consensus size: 41
7298069 ATATGTGTTC
* *
7298079 TCGTGTAAGACCACATCTGGGACGTTGGCATCG-ATCTGTGAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTAT-T-TGAT
* **
7298121 TACGTGTAAGACCATGTCTGGGACATTGAAATCGTATTTGAT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGAT
7298163 TCGTGTAAGACC-CTGTCTGGGACATTGGCAT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCAT
7298194 TGTTTGATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 26 0.42
42 6 0.10
43 28 0.45
44 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGAT
Found at i:7299518 original size:11 final size:11
Alignment explanation
Indices: 7299504--7299547 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
7299494 AGATAAATAT
7299504 TATTTTATTAA
1 TATTTTATTAA
* *
7299515 TATTTAATAAGA
1 TATTTTATTA-A
*
7299527 TATTTTATTAT
1 TATTTTATTAA
7299538 TATTTTATTA
1 TATTTTATTA
7299548 GTATATAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7300807 original size:22 final size:22
Alignment explanation
Indices: 7300782--7300825 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7300772 AACATGTCAG
*
7300782 AAATGACCAAATTGCATGAAAT
1 AAATGACAAAATTGCATGAAAT
7300804 AAATGACAAAATTGCATGAAAT
1 AAATGACAAAATTGCATGAAAT
7300826 GGATTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (22 bp):
AAATGACAAAATTGCATGAAAT
Found at i:7301758 original size:46 final size:46
Alignment explanation
Indices: 7301691--7301907 Score: 310
Period size: 46 Copynumber: 4.7 Consensus size: 46
7301681 TGGCAACCTG
*
7301691 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
7301737 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
7301783 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
7301829 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
7301875 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
7301908 TCACGTCAAA
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 156 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:7301886 original size:138 final size:130
Alignment explanation
Indices: 7301642--7301907 Score: 363
Period size: 138 Copynumber: 2.0 Consensus size: 130
7301632 AGTGTGCTCT
*
7301642 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * * *
7301707 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
* *
7301772 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
7301837 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
7301901 TATGGCA
122 CATGGCA
7301908 TCACGTCAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
137 1 0.01
138 67 0.57
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:7302865 original size:22 final size:21
Alignment explanation
Indices: 7302835--7302890 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
7302825 ATAATGGAGT
7302835 AAATGATGTATGTTATTGAGTTA-
1 AAAT-ATGTATG-TATT-AGTTAG
7302858 AAATATGTAATGTATTAGTTAG
1 AAATATGT-ATGTATTAGTTAG
*
7302880 TAATATGTATG
1 AAATATGTATG
7302891 CCATATACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 8 0.27
22 15 0.50
23 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.43
Consensus pattern (21 bp):
AAATATGTATGTATTAGTTAG
Found at i:7303756 original size:36 final size:36
Alignment explanation
Indices: 7303710--7303814 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 36
7303700 TTCAGAGCCA
* * * *
7303710 CATTGGTGTGTTTTCGAATGGATTAACTCTTATAAG
1 CATTGATGTGTTTTTGGATGGATTAGCTCTTATAAG
* *
7303746 CATTGATGTGTTTTTGGATGAATTAGCTCTTATGAG
1 CATTGATGTGTTTTTGGATGGATTAGCTCTTATAAG
* **
7303782 AATTGATGCATTTTTGGATGGATTAGCTCTTAT
1 CATTGATGTGTTTTTGGATGGATTAGCTCTTAT
7303815 GAGTATCTGG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 59 1.00
ACGTcount: A:0.24, C:0.10, G:0.23, T:0.44
Consensus pattern (36 bp):
CATTGATGTGTTTTTGGATGGATTAGCTCTTATAAG
Found at i:7304232 original size:26 final size:26
Alignment explanation
Indices: 7304196--7304248 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7304186 TCGGATTATA
7304196 TGGCATGTAATAGGCTTGTATGTCTT
1 TGGCATGTAATAGGCTTGTATGTCTT
7304222 TGGCATGTAATAGGCTTGTATGTCTT
1 TGGCATGTAATAGGCTTGTATGTCTT
7304248 T
1 T
7304249 ACTATTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.43
Consensus pattern (26 bp):
TGGCATGTAATAGGCTTGTATGTCTT
Found at i:7312418 original size:27 final size:27
Alignment explanation
Indices: 7312380--7312433 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7312370 ATAAGATGTT
7312380 GTCATTGGGGAACAATTACTGAACTAA
1 GTCATTGGGGAACAATTACTGAACTAA
7312407 GTCATTGGGGAACAATTACTGAACTAA
1 GTCATTGGGGAACAATTACTGAACTAA
7312434 CACATTACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (27 bp):
GTCATTGGGGAACAATTACTGAACTAA
Found at i:7312439 original size:27 final size:27
Alignment explanation
Indices: 7312382--7312439 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
7312372 AAGATGTTGT
**
7312382 CATTGGGGAACAATTACTGAACTAAGT
1 CATTGGGGAACAATTACTGAACTAACA
7312409 CATTGGGGAACAATTACTGAACTAACA
1 CATTGGGGAACAATTACTGAACTAACA
7312436 CATT
1 CATT
7312440 ACGAGAATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
CATTGGGGAACAATTACTGAACTAACA
Found at i:7312545 original size:85 final size:81
Alignment explanation
Indices: 7312394--7312561 Score: 282
Period size: 85 Copynumber: 2.0 Consensus size: 81
7312384 TTGGGGAACA
*
7312394 ATTACTGAACTAAGTCATTGGGGAACAATTACTGAACTAACACATTACGAGAATGTTCTCAGACT
1 ATTACTGAACTAAGTCATTGGGAAACAATTACTGAACTAACACATTACGAGAATGTTCTCAGACT
7312459 ATTATATAAAAATCAC
66 ATTATATAAAAATCAC
*
7312475 ATTACTGAACTAAGTTATTGGGAAACAATTACTGAAAGAACTAACACATTACGAGAATGTTCTCA
1 ATTACTGAACTAAGTCATTGGGAAACAATTACT----GAACTAACACATTACGAGAATGTTCTCA
7312540 GACTATTATATAAAAATCAC
62 GACTATTATATAAAAATCAC
7312560 AT
1 AT
7312562 CAATTCTCGT
Statistics
Matches: 81, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
81 31 0.38
85 50 0.62
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (81 bp):
ATTACTGAACTAAGTCATTGGGAAACAATTACTGAACTAACACATTACGAGAATGTTCTCAGACT
ATTATATAAAAATCAC
Found at i:7319623 original size:18 final size:19
Alignment explanation
Indices: 7319595--7319630 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7319585 TTAAATTCCC
7319595 TTTTAATTTCTCACTCAAA
1 TTTTAATTTCTCACTCAAA
*
7319614 TTTT-ATTTCTCTCTCAA
1 TTTTAATTTCTCACTCAA
7319631 CTCTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTCTCACTCAAA
Found at i:7319637 original size:18 final size:18
Alignment explanation
Indices: 7319600--7319638 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7319590 TTCCCTTTTA
*
7319600 ATTTCTCACTCAAATTTT
1 ATTTCTCACTCAAATCTT
* *
7319618 ATTTCTCTCTCAACTCTT
1 ATTTCTCACTCAAATCTT
7319636 ATT
1 ATT
7319639 ATTATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTCTCACTCAAATCTT
Found at i:7322523 original size:39 final size:39
Alignment explanation
Indices: 7322480--7322558 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
7322470 ATTTCGATGT
*
7322480 CTGTCCTTGAGTATTTTCTCCTTTCTACTTTGCGTCCCC
1 CTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCGTCCCC
7322519 CTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCGTCCCC
1 CTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCGTCCCC
7322558 C
1 C
7322559 CTTTGATCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.08, C:0.35, G:0.13, T:0.44
Consensus pattern (39 bp):
CTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCGTCCCC
Found at i:7324623 original size:6 final size:6
Alignment explanation
Indices: 7324612--7324649 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
7324602 CTTTAGAACT
7324612 AAAATA AAAATA AAAATA AAAATA AAAA-A GAAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA AA
7324650 GCGAAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:7324672 original size:12 final size:11
Alignment explanation
Indices: 7324611--7324673 Score: 54
Period size: 12 Copynumber: 5.4 Consensus size: 11
7324601 TCTTTAGAAC
7324611 TAAAATAAAAA
1 TAAAATAAAAA
7324622 TAAAAATAAAAA
1 T-AAAATAAAAA
*
7324634 TAAAAAAGAAAA
1 TAAAATA-AAAA
** *
7324646 TAAAGCGAAATA
1 TAAA-ATAAAAA
7324658 TAAAATATAAAA
1 TAAAATA-AAAA
7324670 TAAA
1 TAAA
7324674 TAGACTCAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
11 7 0.17
12 33 0.80
13 1 0.02
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:7326134 original size:9 final size:9
Alignment explanation
Indices: 7326118--7326226 Score: 55
Period size: 9 Copynumber: 11.7 Consensus size: 9
7326108 AATATAGGAA
7326118 AATAAAAAT
1 AATAAAAAT
*
7326127 ACTAAAAAT
1 AATAAAAAT
7326136 AAT-AAAAT
1 AATAAAAAT
* *
7326144 AGGAGAAAACAA
1 A--ATAAAA-AT
7326156 AGATAAAAAT
1 A-ATAAAAAT
*
7326166 GA-AAAAAT
1 AATAAAAAT
7326174 AA-AAAAACT
1 AATAAAAA-T
*
7326183 AAAATAAAAT
1 AATA-AAAAT
7326193 AA-AACAAAGT
1 AATAA-AAA-T
7326203 AATAAAAAT
1 AATAAAAAT
**
7326212 AATAATCAT
1 AATAAAAAT
7326221 AATAAA
1 AATAAA
7326227 TAACAAATAT
Statistics
Matches: 79, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
8 19 0.24
9 31 0.39
10 12 0.15
11 15 0.19
12 2 0.03
ACGTcount: A:0.72, C:0.05, G:0.06, T:0.17
Consensus pattern (9 bp):
AATAAAAAT
Found at i:7326210 original size:19 final size:18
Alignment explanation
Indices: 7326167--7326213 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
7326157 GATAAAAATG
7326167 AAAAAATAAAAAAACTAA
1 AAAAAATAAAAAAACTAA
*
7326185 AATAAAATAAAACAAAGTAA
1 AA-AAAATAAAA-AAACTAA
*
7326205 TAAAAATAA
1 AAAAAATAA
7326214 TAATCATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 16 0.64
20 7 0.28
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAAATAAAAAAACTAA
Found at i:7326249 original size:19 final size:21
Alignment explanation
Indices: 7326225--7326266 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
7326215 AATCATAATA
7326225 AATAACA-AAT-ATAATGAAG
1 AATAACAGAATAATAATGAAG
7326244 AATAACAGTAATAATAATGAAG
1 AATAACAG-AATAATAATGAAG
7326266 A
1 A
7326267 CTAATAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
AATAACAGAATAATAATGAAG
Found at i:7330963 original size:9 final size:9
Alignment explanation
Indices: 7330945--7330981 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7330935 TATAGTTTGA
7330945 TATTCGAAT
1 TATTCGAAT
*
7330954 TATTCAAAT
1 TATTCGAAT
*
7330963 TATTCGAGT
1 TATTCGAAT
7330972 TATTCGAAT
1 TATTCGAAT
7330981 T
1 T
7330982 CGAAAACACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7331197 original size:15 final size:15
Alignment explanation
Indices: 7331172--7331216 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
7331162 TACCAGAAGC
7331172 AATTA-AAAAGAAAA
1 AATTAGAAAAGAAAA
7331186 AATTAGAAAAGAAAA
1 AATTAGAAAAGAAAA
*
7331201 ATTTAGAAAAGAAAA
1 AATTAGAAAAGAAAA
7331216 A
1 A
7331217 TTAAACTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 5 0.17
15 24 0.83
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (15 bp):
AATTAGAAAAGAAAA
Found at i:7331217 original size:15 final size:15
Alignment explanation
Indices: 7331177--7331218 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
7331167 GAAGCAATTA
*
7331177 AAAAGAAAAAATTAG
1 AAAAGAAAAATTTAG
7331192 AAAAGAAAAATTTAG
1 AAAAGAAAAATTTAG
7331207 AAAAGAAAAATT
1 AAAAGAAAAATT
7331219 AAACTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (15 bp):
AAAAGAAAAATTTAG
Found at i:7332211 original size:39 final size:39
Alignment explanation
Indices: 7332168--7332242 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
7332158 ATTCCAATGT
* *
7332168 CTGTCCTTGAGTATTTTCTCCTTTCTACTTTGCGTCGCC
1 CTGTCATTGAGTATTTTCTCCTTTCTACTCTGCGTCGCC
7332207 CTGTCATTGAGTATTTTCTCCTTTCTACTCTGCGTC
1 CTGTCATTGAGTATTTTCTCCTTTCTACTCTGCGTC
7332243 CCCCCTTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.09, C:0.29, G:0.15, T:0.47
Consensus pattern (39 bp):
CTGTCATTGAGTATTTTCTCCTTTCTACTCTGCGTCGCC
Found at i:7333145 original size:50 final size:50
Alignment explanation
Indices: 7332986--7333159 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 50
7332976 CCTGTGTGCT
* ** * *
7332986 AGTGTAAGA-CATGTCTGAGACAT-GCATTGGCCAC-AT-TCTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCC
* * * * * * *
7333032 AGTGTAAGACCATATCTGGGATATGGCATCAGCATTG--AGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCC
*
7333080 AGTGTAAGACTATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCC
*
7333130 AGTGTAAGACCATGTCTGGGACATGACATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
7333160 GACTTTGATG
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 9 0.09
47 11 0.11
48 44 0.44
50 36 0.36
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCC
Found at i:7333148 original size:98 final size:94
Alignment explanation
Indices: 7332983--7333159 Score: 246
Period size: 98 Copynumber: 1.8 Consensus size: 94
7332973 TGACCTGTGT
** *
7332983 GCTAGTGTAAGACATGTCTGAGACATGCATTGGCCACATTCTGAGAGCCAGTGTAAGACCATATC
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATATC
* *
7333048 TGGGATATGGCATCAGCATTGAGACGAGA
66 TGGGACATGACATCAGCATTGAGACGAGA
* *
7333077 GCTAGTGTAAGACTATGTCTGGGACATGGCATCAGCCTCGATATATGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGAC-ATGTCTGAGACAT-GCATCAGCCAC-AT-TATGAGAGCCAGTGTAAGACCA
*
7333142 TGTCTGGGACATGACATC
62 TATCTGGGACATGACATC
7333160 GACTTTGATG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
94 13 0.18
95 12 0.17
96 8 0.11
97 2 0.03
98 36 0.51
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATATC
TGGGACATGACATCAGCATTGAGACGAGA
Found at i:7333186 original size:98 final size:98
Alignment explanation
Indices: 7333024--7333203 Score: 222
Period size: 98 Copynumber: 1.8 Consensus size: 98
7333014 GGCCACATTC
* * * * *
7333024 TGAGAGCCAGTGTAAGACCATATCTGGGATATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATATCTGGGACATGACATCAGCATTGAGACGAGAGCCAATATAAGA
*
7333089 CTATG-TCTGGGACATGGCATCAGCCTCGATATA
66 CAATGTTC-GGGACATGGCATCAGCCTCGATATA
* * * *
7333122 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATC-GACTTTGATG-TGTGAGCCAATATAA
1 TGAGAGCCAGTGTAAGACCATATCTGGGACATGACATCAG-CATTGA-GACGAGAGCCAATATAA
7333185 GACAATGTTCGGGACATGG
64 GACAATGTTCGGGACATGG
7333204 TGTCGACATC
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
97 1 0.01
98 65 0.94
99 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (98 bp):
TGAGAGCCAGTGTAAGACCATATCTGGGACATGACATCAGCATTGAGACGAGAGCCAATATAAGA
CAATGTTCGGGACATGGCATCAGCCTCGATATA
Found at i:7336684 original size:19 final size:20
Alignment explanation
Indices: 7336654--7336693 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
7336644 AAATAGATTG
7336654 CAGTTAAAAAATTAATAAAT
1 CAGTTAAAAAATTAATAAAT
7336674 CAGTT-AAAAATTAATAAAT
1 CAGTTAAAAAATTAATAAAT
7336693 C
1 C
7336694 TATCAATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (20 bp):
CAGTTAAAAAATTAATAAAT
Found at i:7337485 original size:19 final size:19
Alignment explanation
Indices: 7337421--7337485 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
7337411 TTTATATCTC
*
7337421 AAAAAATTATAAAGAAAA-T
1 AAAAAAATATAAA-AAAACT
*
7337440 AAAGAATATATAAAAAAAACT
1 AAA-AAAATAT-AAAAAAACT
**
7337461 TGAAAAATATAAAAAAACT
1 AAAAAAATATAAAAAAACT
7337480 AAAAAA
1 AAAAAA
7337486 CCTTAAACCT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
19 16 0.44
20 15 0.42
21 5 0.14
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAAAAATATAAAAAAACT
Found at i:7342232 original size:16 final size:16
Alignment explanation
Indices: 7342211--7342241 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7342201 TGCCCTAGAT
7342211 TTTTTTATTATTTTTA
1 TTTTTTATTATTTTTA
*
7342227 TTTTTTTTTATTTTT
1 TTTTTTATTATTTTT
7342242 GGGAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTTATTATTTTTA
Found at i:7349702 original size:25 final size:26
Alignment explanation
Indices: 7349668--7349719 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7349658 AAGTTGGTAA
7349668 AATTCTTTTTATG-C-CCTTAAAAATT
1 AATTCTTTTTA-GACTCCTTAAAAATT
*
7349693 AATTTTTTTTAGACTCCTTAAAAATT
1 AATTCTTTTTAGACTCCTTAAAAATT
7349719 A
1 A
7349720 GTAATTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 11 0.46
26 12 0.50
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.48
Consensus pattern (26 bp):
AATTCTTTTTAGACTCCTTAAAAATT
Found at i:7350588 original size:15 final size:17
Alignment explanation
Indices: 7350568--7350600 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7350558 TCAATCTGGG
7350568 TATTCTT-TTTTT-TTT
1 TATTCTTATTTTTCTTT
7350583 TATTCTTATTTTTCTTT
1 TATTCTTATTTTTCTTT
7350600 T
1 T
7350601 TCATTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (17 bp):
TATTCTTATTTTTCTTT
Found at i:7356515 original size:11 final size:11
Alignment explanation
Indices: 7356499--7356525 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7356489 ATTTTGTATA
7356499 ATATTTAATTT
1 ATATTTAATTT
7356510 ATATTTAATTT
1 ATATTTAATTT
7356521 ATATT
1 ATATT
7356526 AATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTTAATTT
Found at i:7357689 original size:130 final size:130
Alignment explanation
Indices: 7357456--7357707 Score: 353
Period size: 130 Copynumber: 1.9 Consensus size: 130
7357446 GATTATTCAC
* * *
7357456 TTAAAAATTCTTTAAAACAAAGGCAATGTTCGATGTTCGGCAACTCGGGAATCGTACCTTATCGT
1 TTAAAAATTCTTTAAAACAAAGGCAATGTTCGATGTTCGACAACTCGGGAATCATACCCTATCGT
* * * * *
7357521 GTTGGGTTGCGATTTCCCGTTCGTTCAAAACCATCGAATATTCTTTTGGAATTTCACCAATGTCT
66 GCTGGGTTACGATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCACCAATGTCT
* * * *
7357586 TTAAAAATTCTTTAAAACAAATGTAATGTTCGATGTTTGACAACTCGGGGAATCATGCCCTATCG
1 TTAAAAATTCTTTAAAACAAAGGCAATGTTCGATGTTCGACAACTC-GGGAATCATACCCTATCG
* * *
7357651 TGCTGGGTTACGA-TTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCAC
65 TGCTGGGTTACGATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCAC
7357708 TCGTGTTCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 80 0.75
131 26 0.25
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (130 bp):
TTAAAAATTCTTTAAAACAAAGGCAATGTTCGATGTTCGACAACTCGGGAATCATACCCTATCGT
GCTGGGTTACGATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCACCAATGTCT
Found at i:7358784 original size:2 final size:2
Alignment explanation
Indices: 7358777--7358817 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7358767 CCTCTGCAAC
7358777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7358818 CCATTTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7362845 original size:37 final size:38
Alignment explanation
Indices: 7362800--7362882 Score: 159
Period size: 38 Copynumber: 2.2 Consensus size: 38
7362790 AAATTTTGTC
7362800 AAAAAATATTT-AAAAAACAATAAGTTTTCAAGTCAAT
1 AAAAAATATTTAAAAAAACAATAAGTTTTCAAGTCAAT
7362837 AAAAAATATTTAAAAAAACAATAAGTTTTCAAGTCAAT
1 AAAAAATATTTAAAAAAACAATAAGTTTTCAAGTCAAT
7362875 AAAAAATA
1 AAAAAATA
7362883 ATCAATTGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 11 0.24
38 34 0.76
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (38 bp):
AAAAAATATTTAAAAAAACAATAAGTTTTCAAGTCAAT
Found at i:7367137 original size:20 final size:21
Alignment explanation
Indices: 7367112--7367152 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7367102 TTTCTTTCAC
7367112 TATTTTAAAT-ATAAAATATT
1 TATTTTAAATCATAAAATATT
*
7367132 TATTTTATATCATAAAATATT
1 TATTTTAAATCATAAAATATT
7367153 AAAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TATTTTAAATCATAAAATATT
Found at i:7374246 original size:32 final size:30
Alignment explanation
Indices: 7374172--7374253 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
7374162 GTATACAATT
* *
7374172 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
7374204 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
7374236 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
7374254 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:7374524 original size:20 final size:20
Alignment explanation
Indices: 7374499--7374538 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7374489 ATAACAAACA
**
7374499 GGAAAGAAAGGAAGAAAAGG
1 GGAAAGAAAAAAAGAAAAGG
7374519 GGAAAGAAAAAAAGAAAAGG
1 GGAAAGAAAAAAAGAAAAGG
7374539 AAAAACTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (20 bp):
GGAAAGAAAAAAAGAAAAGG
Found at i:7375439 original size:5 final size:5
Alignment explanation
Indices: 7375429--7375459 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
7375419 TTGGTCTAGT
7375429 AATAA AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA AATAA A
7375460 GTTATATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:7376456 original size:21 final size:20
Alignment explanation
Indices: 7376419--7376473 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
7376409 TATTAAAATA
7376419 TAAAAATA-ATA-ATAGTAT
1 TAAAAATATATACATAGTAT
7376437 TAAAAAGTATATACATAGTAT
1 TAAAAA-TATATACATAGTAT
*
7376458 TAACAATATATACATA
1 TAAAAATATATACATA
7376474 ATATAGTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 6 0.18
19 2 0.06
20 13 0.39
21 12 0.36
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATATATACATAGTAT
Found at i:7376522 original size:2 final size:2
Alignment explanation
Indices: 7376515--7376577 Score: 67
Period size: 2 Copynumber: 31.5 Consensus size: 2
7376505 AATATGTAAA
7376515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AGT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * *
7376556 AA AA AT AT AC AT GAT AT AT AT A
1 AT AT AT AT AT AT -AT AT AT AT A
7376578 AAATATAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
1 2 0.04
2 47 0.89
3 4 0.08
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (2 bp):
AT
Found at i:7376536 original size:27 final size:26
Alignment explanation
Indices: 7376444--7376675 Score: 85
Period size: 27 Copynumber: 8.8 Consensus size: 26
7376434 TATTAAAAAG
* *
7376444 TATATACATAGTATTAACAATATATACA
1 TATATATATA-TATTAA-AATATATATA
*
7376472 TA-ATATAGT-TATTAAAAAATATATGA
1 TATATATA-TATATTAAAATATATAT-A
*
7376498 -ATA-AAATAATATGTAAAATATATATA
1 TATATATAT-ATAT-TAAAATATATATA
*
7376524 TATATATATATA-T-ATATATATA-A
1 TATATATATATATTAAAATATATATA
* * *
7376547 TATAGTAT-TAAAAATATACATGATATATA
1 TATA-TATAT-ATATTA-AAAT-ATATATA
* *
7376576 TA-AAATATAATATTAAAA-AGATATA
1 TATATATAT-ATATTAAAATATATATA
*
7376601 TATACGTA-ATATATATAAAA-ATGTATA
1 TATA--TATATATAT-TAAAATATATATA
* * *
7376628 CATA-ATATAGTATTAAAATATTTACA
1 TATATATATA-TATTAAAATATATATA
*
7376654 TAATATATACATATTAGAAATA
1 T-ATATATATATATTA-AAATA
7376676 ATAATAATGT
Statistics
Matches: 156, Mismatches: 22, Indels: 52
0.68 0.10 0.23
Matches are distributed among these distances:
23 6 0.04
24 15 0.10
25 28 0.18
26 25 0.16
27 51 0.33
28 28 0.18
29 3 0.02
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (26 bp):
TATATATATATATTAAAATATATATA
Found at i:7376594 original size:14 final size:15
Alignment explanation
Indices: 7376489--7376604 Score: 55
Period size: 14 Copynumber: 7.5 Consensus size: 15
7376479 GTTATTAAAA
7376489 AATATATGAATAAA-AT
1 AATATAT-AA-AAATAT
*
7376505 AATATGT-AAAATAT
1 AATATATAAAAATAT
* *
7376519 -ATATATATATATAT
1 AATATATAAAAATAT
*
7376533 ATATATATATATAATAT
1 A-ATATATA-AAAATAT
*
7376550 AGTAT-TAAAAATAT
1 AATATATAAAAATAT
7376564 ACATGATATATATAAAATAT
1 --A--ATATATA-AAAATAT
*
7376584 AATAT-TAAAAAGAT
1 AATATATAAAAATAT
7376598 -ATATATA
1 AATATATA
7376605 CGTAATATAT
Statistics
Matches: 77, Mismatches: 11, Indels: 26
0.68 0.10 0.23
Matches are distributed among these distances:
13 12 0.16
14 22 0.29
15 4 0.05
16 21 0.27
17 5 0.06
18 4 0.05
19 2 0.03
20 7 0.09
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (15 bp):
AATATATAAAAATAT
Found at i:7376600 original size:36 final size:33
Alignment explanation
Indices: 7376506--7376604 Score: 103
Period size: 34 Copynumber: 3.0 Consensus size: 33
7376496 GAATAAAATA
* * * *
7376506 ATATGTAAAATAT-ATA-TATATATATATATAT
1 ATATATAAAATATAATATTAAAAATATACATAT
* *
7376537 ATATATATAATATAGTATTAAAAATATACATGAT
1 ATATATAAAATATAATATTAAAAATATACAT-AT
* *
7376571 ATATATAAAATATAATATTAAAAAGATATATAT
1 ATATATAAAATATAATATTAAAAATATACATAT
7376604 A
1 A
7376605 CGTAATATAT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
31 11 0.20
32 2 0.04
33 13 0.24
34 29 0.53
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (33 bp):
ATATATAAAATATAATATTAAAAATATACATAT
Found at i:7376611 original size:63 final size:64
Alignment explanation
Indices: 7376506--7376648 Score: 157
Period size: 63 Copynumber: 2.2 Consensus size: 64
7376496 GAATAAAATA
* * * * * *
7376506 ATATGTAAAATATATATATATATATATATATATATATATAATATAGTATTAAAAA-TATACATGA
1 ATATATAAAATATATATATATAAAAAGATATATATACATAATATA-TA-TAAAAAGTATACATAA
7376570 T
64 T
*
7376571 ATATATAAAATATA-ATAT-TAAAAAGATATATATACGTAATATATATAAAAATGTATACATAAT
1 ATATATAAAATATATATATATAAAAAGATATATATACATAATATATATAAAAA-GTATACATAAT
7376634 ATAGTATTAAAATAT
1 ATA-TA-TAAAATAT
7376649 TTACATAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
61 6 0.09
62 2 0.03
63 32 0.48
64 6 0.09
65 21 0.31
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (64 bp):
ATATATAAAATATATATATATAAAAAGATATATATACATAATATATATAAAAAGTATACATAAT
Found at i:7376653 original size:24 final size:23
Alignment explanation
Indices: 7376598--7376662 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 23
7376588 TTAAAAAGAT
*
7376598 ATATATACGTAATATATATAAAA
1 ATATATACATAATATATATAAAA
* *
7376621 ATGTATACATAATATAGTATTAAA
1 ATATATACATAATATA-TATAAAA
*
7376645 ATATTTACATAATATATA
1 ATATATACATAATATATA
7376663 CATATTAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 16 0.44
24 20 0.56
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (23 bp):
ATATATACATAATATATATAAAA
Found at i:7376741 original size:21 final size:20
Alignment explanation
Indices: 7376712--7376765 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
7376702 TAATACTACA
*
7376712 TAAATATATACATATATATAT
1 TAAACATATACATATATA-AT
*
7376733 TAAAGATATATGCATATATAAT
1 TAAACATATA--CATATATAAT
*
7376755 AAAACATATAC
1 TAAACATATAC
7376766 TAATATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.04
21 9 0.32
22 10 0.36
23 8 0.29
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (20 bp):
TAAACATATACATATATAAT
Found at i:7377047 original size:16 final size:15
Alignment explanation
Indices: 7377018--7377078 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
7377008 GATAATAGTA
*
7377018 AATATAATAATAAAT
1 AATATAAAAATAAAT
*
7377033 AATATTAAAAATAAAA
1 AATA-TAAAAATAAAT
*
7377049 AATGGTAAAAATAATAT
1 AAT-ATAAAAATAA-AT
7377066 AA-A-AAAAATAAAT
1 AATATAAAAATAAAT
7377079 TTGGAAAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 2 0.05
14 8 0.21
15 4 0.11
16 21 0.55
17 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AATATAAAAATAAAT
Found at i:7377468 original size:16 final size:16
Alignment explanation
Indices: 7377447--7377478 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7377437 GCCCAATAAC
*
7377447 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
7377463 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
7377479 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:7378038 original size:22 final size:23
Alignment explanation
Indices: 7377994--7378041 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
7377984 AAAATACGAC
* * *
7377994 AAATATACGAAAATATAATATAA
1 AAATATAAGAAAATAAAAAATAA
7378017 AAATATAAG-AAATAAAAAATAA
1 AAATATAAGAAAATAAAAAATAA
7378039 AAA
1 AAA
7378042 AATTGGAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (23 bp):
AAATATAAGAAAATAAAAAATAA
Found at i:7391965 original size:70 final size:71
Alignment explanation
Indices: 7391694--7392046 Score: 359
Period size: 74 Copynumber: 4.9 Consensus size: 71
7391684 TTTGGGTACT
* * ** *
7391694 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
7391759 GGTCACACG
65 GG--ACACG
* * ** *
7391768 TTGAGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTC
1 CTGAGGTATTTTTAATTTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTC
*
7391833 AGGTCACG
64 AGGACACG
* * * *
7391841 CTGAGGTATTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATT--T-ATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
*
7391906 CAAGACACG
63 CAGGACACG
* * * * * *
7391915 TTGAGGTAATTTCAATTTATG-TTCCAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCGG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
*
7391979 GGCACG
66 GACACG
* * ** *
7391985 CTGAGGTATTTTTAGTTTATGTTT-AGAAAGTTGACTCATATCGCGAGAGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTATGTTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
7392047 TTTAATTTTG
Statistics
Matches: 228, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
70 58 0.25
71 35 0.15
72 1 0.00
73 23 0.10
74 69 0.30
75 36 0.16
76 6 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (71 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
GACACG
Found at i:7391988 original size:144 final size:145
Alignment explanation
Indices: 7391694--7392008 Score: 420
Period size: 144 Copynumber: 2.2 Consensus size: 145
7391684 TTTGGGTACT
* *
7391694 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCA
* * * * **
7391759 GGTCACACGTTGAGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAG
66 AG-CACACGTTGAGGTAATTTCAATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
*
7391824 TCAAGCCTCAGGTCACG
129 TCAAGCCTCAGGGCACG
* * **
7391841 CTGAGGTATTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATTCATG-T-TTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCT
*
7391906 CAAG-ACACGTTGAGGTAATTTCAATTTATG-TTC-CAAAATCAACTCATATTGCGAGAGGTGAG
64 CAAGCACACGTTGAGGTAATTTCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
*
7391968 TCAAGCCTCGGGGCACG
129 TCAAGCCTCAGGGCACG
* *
7391985 CTGAGGTATTTTTAGTTTATGTTT
1 CTGAGGTATTTTTAATTCATGTTT
7392009 AGAAAGTTGA
Statistics
Matches: 148, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
142 2 0.01
143 1 0.01
144 59 0.40
146 3 0.02
147 42 0.28
148 1 0.01
149 40 0.27
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (145 bp):
CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCA
AGCACACGTTGAGGTAATTTCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTC
AAGCCTCAGGGCACG
Found at i:7392280 original size:74 final size:73
Alignment explanation
Indices: 7392046--7392281 Score: 262
Period size: 74 Copynumber: 3.2 Consensus size: 73
7392036 GAGTTAAGCC
* * * *
7392046 TTTT-AATTTTGGTTTTTCAAAATCAACTCATATCGCTAGAGGTGAGTTGAGCCTCGGAGCAC--
1 TTTTCAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAT
7392108 GCTGAGGTA
65 GCTGAGGTA
* ** *
7392117 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAT
1 TTTTCAATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAT
*
7392182 GCCGAGGTA
65 GCTGAGGTA
** * * ** *
7392191 TTTTCAAAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGTTCACAT
1 TTTTCAATTTTTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAT
*
7392256 GCTGAGATA
65 GCTGAGGTA
*
7392265 TTTTCAGTTTTTGTTTT
1 TTTTCAATTTTTGTTTT
7392282 TAATGTCTAT
Statistics
Matches: 135, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
71 5 0.04
72 48 0.36
73 3 0.02
74 79 0.59
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39
Consensus pattern (73 bp):
TTTTCAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATG
CTGAGGTA
Found at i:7393088 original size:16 final size:16
Alignment explanation
Indices: 7393067--7393098 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7393057 GCCCAATAAC
*
7393067 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
7393083 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
7393099 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:7393655 original size:17 final size:18
Alignment explanation
Indices: 7393625--7393658 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7393615 AATATACGAA
*
7393625 AATATAATATAAAAATAT
1 AATATAATAAAAAAATAT
7393643 AATA-AATAAAAAAATA
1 AATATAATAAAAAAATA
7393659 AAAAAATTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATATAATAAAAAAATAT
Found at i:7393659 original size:15 final size:16
Alignment explanation
Indices: 7393623--7393659 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7393613 CAAATATACG
7393623 AAAAT-ATAATATAAA
1 AAAATAATAATATAAA
*
7393638 AATATAATAA-ATAAA
1 AAAATAATAATATAAA
7393653 AAAATAA
1 AAAATAA
7393660 AAAAATTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATAATAATATAAA
Done.