Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 280 of 425
Found at i:86672469 original size:20 final size:20
Alignment explanation
Indices: 86672446--86672508 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
86672436 GAACATCTCG
86672446 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86672466 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
86672486 TGTGCGTATCATACATATCA
1 TGTGCATATCATACATATCA
86672506 TGT
1 TGT
86672509 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86672573 original size:25 final size:25
Alignment explanation
Indices: 86672545--86672592 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
86672535 ATATATAAAC
* *
86672545 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
86672570 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
86672593 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:86676433 original size:29 final size:29
Alignment explanation
Indices: 86676391--86676448 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
86676381 GGCTAACCGG
86676391 TAGGCAACTAGCCCTACTCTCTCGGTAAT
1 TAGGCAACTAGCCCTACTCTCTCGGTAAT
*
86676420 TAGGCAACTGGCCCTACTCTCTCGGTAAT
1 TAGGCAACTAGCCCTACTCTCTCGGTAAT
86676449 CTCATACGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (29 bp):
TAGGCAACTAGCCCTACTCTCTCGGTAAT
Found at i:86683996 original size:39 final size:40
Alignment explanation
Indices: 86683897--86684000 Score: 138
Period size: 39 Copynumber: 2.6 Consensus size: 40
86683887 AACTTGCGAA
*
86683897 TGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAAT
* * * *
86683937 TGCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAAT
* *
86683976 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
86684001 CATTCAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 29 0.52
40 27 0.48
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAAT
Found at i:86691912 original size:40 final size:40
Alignment explanation
Indices: 86691868--86692019 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
86691858 ATATCACGAT
86691868 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
*
86691908 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
** * * *
86691948 TTGCATGAATGCCTTCGGGTCTTAGCCCGGATATAGCTAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
* * *
86691988 TAGCACAATTGCCTTCGGGTCTTAACCCGGAT
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
86692020 ATAAATTTCA
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
Found at i:86691938 original size:80 final size:79
Alignment explanation
Indices: 86691843--86692061 Score: 237
Period size: 80 Copynumber: 2.7 Consensus size: 79
86691833 CCAAGGCCAA
* * * *
86691843 CGGGACTTTACCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 CGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
*
86691908 TTGCACGAA-TGCCTT
65 TAGCAC-AATTGCCTT
* * * ** * *
86691923 CGGGTCTTAGCCCGGATTTAACAACTTGCATGAATGCCTTCGGGTCTTAGCCCGGATATAGCTAC
1 CGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
86691988 TAGCACAATTGCCTT
65 TAGCACAATTGCCTT
* *
86692003 CGGGTCTTAACCCGGATATA-AATTT-CAGCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 CGGGTCTTAACCCGGATATACAATTTGCA-CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
86692062 CATTCAATTT
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
77 2 0.02
78 4 0.03
79 5 0.04
80 104 0.90
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (79 bp):
CGGGTCTTAACCCGGATATACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
AGCACAATTGCCTT
Found at i:86692020 original size:40 final size:39
Alignment explanation
Indices: 86691853--86692023 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 39
86691843 CGGGACTTTA
* * *
86691853 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCAC-AATGCCTTCGGGTCTTAG
*
86691893 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCAC-AATGCCTTCGGGTCTTAG
* *
86691933 CCCGGATTTAACAACTTGCATGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCA-CAATGCCTTCGGGTCTTAG
* * * *
86691973 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAA-TGCCTTCGGGTCTTAG
86692013 CCCGGATATAA
1 CCCGGATATAA
86692024 ATTTCAGCAT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.02
40 114 0.98
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCCGGATATAACAACTTGCACAATGCCTTCGGGTCTTAG
Found at i:86692038 original size:40 final size:40
Alignment explanation
Indices: 86691877--86692061 Score: 168
Period size: 40 Copynumber: 4.6 Consensus size: 40
86691867 TTTGCACAAA
* *
86691877 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTT--GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGATAT-A-AACTTCAGCA-TAAT
*
86691917 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTT--GCATGAA-
1 TGCCTTCGGGTCTTAGCCCGGATAT-A-AACTTCAGCAT-AAT
* * *
86691957 TGCCTTCGGGTCTTAGCCCGGATAT-AGCTACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAAACTTC-AGCATAAT
* *
86691997 TGCCTTCGGGTCTTAACCCGGATATAAATTTCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAAACTTCAGCATAAT
* *
86692037 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
86692062 CATTCAATTT
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
37 3 0.02
39 2 0.02
40 118 0.94
41 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAAACTTCAGCATAAT
Found at i:86698268 original size:47 final size:47
Alignment explanation
Indices: 86698198--86698376 Score: 172
Period size: 47 Copynumber: 3.8 Consensus size: 47
86698188 AGGGTAGAGT
86698198 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGT-AC-ATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAATC-A
* * *
86698245 GTCGATGCCATGTCCCAGGCATGGTCTTACACTGGCTCTCACAAATCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAC-AATCA
* * * *
86698293 GTATCGATGCCATGTCCTAGACATGGTCTTACACTAGTTCCCATAA-C-
1 G--TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATCA
*
86698340 GTGGCCGAT-ACATGTCCCAGACAT-GTCTTACACTAGC
1 GT---CGATGCCATGTCCCAGACATGGTCTTACACTAGC
86698377 ACACAATTGA
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 13 0.12
47 52 0.46
48 6 0.05
49 5 0.04
50 35 0.31
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATCA
Found at i:86707407 original size:44 final size:44
Alignment explanation
Indices: 86707342--86707430 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
86707332 TGAGTCAGAT
* *
86707342 AATTCACCTCATGTGTCTTATGCTGGCGAGACACATAAGCAACC
1 AATTCACCTCATGCGTATTATGCTGGCGAGACACATAAGCAACC
*
86707386 AATTCACCTCATGCGTATTATGCTGGTGAGACACATAAGCAACC
1 AATTCACCTCATGCGTATTATGCTGGCGAGACACATAAGCAACC
86707430 A
1 A
86707431 CGTTGCCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
AATTCACCTCATGCGTATTATGCTGGCGAGACACATAAGCAACC
Found at i:86719827 original size:49 final size:49
Alignment explanation
Indices: 86719710--86720017 Score: 518
Period size: 49 Copynumber: 6.4 Consensus size: 49
86719700 ATGATATATG
* * * * *
86719710 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
86719757 TGTGATAAGG-CTAAT-GCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86719804 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86719853 TGTGATAAGGCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86719901 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
86719950 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86719999 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
86720018 TAATGTAAAA
Statistics
Matches: 250, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
45 24 0.10
46 4 0.02
47 23 0.09
48 53 0.21
49 146 0.58
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:86719903 original size:97 final size:97
Alignment explanation
Indices: 86719710--86720017 Score: 514
Period size: 97 Copynumber: 3.2 Consensus size: 97
86719700 ATGATATATG
* * * * *
86719710 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATGTGTGATAAGG-CTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* *
86719772 GCCGATGTGATGAATGTGAAAGTGTATGTATA
66 GGCGATGTGGTGAATGTGAAAGTGTATGTATA
86719804 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
86719869 GGCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCGATGTGGTGAATGTGAAAGTGTATGTATA
86719901 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
86719966 GGCCGATGTGGTGAATGTGAAAGTGTATATATA
66 GG-CGATGTGGTGAATGTGAAAGTGTATGTATA
86719999 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
86720018 TAATGTAAAA
Statistics
Matches: 202, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 39 0.19
96 13 0.06
97 102 0.50
98 48 0.24
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (97 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:86719923 original size:146 final size:142
Alignment explanation
Indices: 86719703--86720023 Score: 516
Period size: 146 Copynumber: 2.2 Consensus size: 142
86719693 AATATGTATG
* * *
86719703 ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATGTGTGATAAGGC
1 ATATATATGTGATAAGGCCTAATGG-CAATGTGATGAATGTGAAAGTGCATATATGTGATAAGGC
86719768 TAATGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTG
65 TAATGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTG
86719833 AATGTGAAAGTGT
130 AATGTGAAAGTGT
* * * *
86719846 ATGTATATGTGATAAGGCCTAATGGCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
1 ATATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAAAGTGCA--TATATGTGATAAGG
*
86719911 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
64 -CTAAT-GCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
86719976 GTGAATGTGAAAGTGT
127 GTGAATGTGAAAGTGT
86719992 ATATATATGTGATAAGGCCTAATGGCTAATGT
1 ATATATATGTGATAAGGCCTAATGGC-AATGT
86720024 AAAATATATG
Statistics
Matches: 163, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
142 21 0.13
143 22 0.13
144 13 0.08
145 5 0.03
146 98 0.60
147 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (142 bp):
ATATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCT
AATGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGA
ATGTGAAAGTGT
Found at i:86720048 original size:146 final size:145
Alignment explanation
Indices: 86719703--86720065 Score: 468
Period size: 146 Copynumber: 2.5 Consensus size: 145
86719693 AATATGTATG
* * * * * *
86719703 ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCAT--ATGTGTGATAAG
1 ATATATATGTGATAAGGCCTAATGG-CAATGTGA-AAATATGAAAGTGTATGCATATGTGATAAG
86719766 G-CTAAT-GCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
64 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
86719829 GGTGAATGTGAAAGTGT
129 GGTGAATGTGAAAGTGT
* * ** * *
86719846 ATGTATATGTGATAAGGCCTAATGGCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
1 ATATATATGTGATAAGGCCTAATGGCAATGT-GAAAATATGAAAGTGTATGCATATGTGATAAGG
*
86719911 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
65 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
86719976 GTGAATGTGAAAGTGT
130 GTGAATGTGAAAGTGT
** *
86719992 ATATATATGTGATAAGGCCTAATGGCTAATGT-AAAATAT-ATGTGTGATATGCATATGTGGTAA
1 ATATATATGTGATAAGGCCTAATGGC-AATGTGAAAATATGA-AAGTG-TATGCATATGTGATAA
* *
86720055 AGCCGAATGGC
63 GGCCTAATGGC
86720066 TAATGTGAAT
Statistics
Matches: 193, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
142 20 0.10
143 23 0.12
144 13 0.07
145 12 0.06
146 121 0.63
147 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (145 bp):
ATATATATGTGATAAGGCCTAATGGCAATGTGAAAATATGAAAGTGTATGCATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGG
TGAATGTGAAAGTGT
Found at i:86720169 original size:37 final size:37
Alignment explanation
Indices: 86720113--86720277 Score: 294
Period size: 37 Copynumber: 4.4 Consensus size: 37
86720103 AAACTTGGAA
*
86720113 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
86720151 TATGACCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
86720188 TATGTCCAGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86720225 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86720262 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
86720278 TTCGTAATAA
Statistics
Matches: 122, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 118 0.97
38 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:86722378 original size:29 final size:29
Alignment explanation
Indices: 86722333--86722438 Score: 185
Period size: 29 Copynumber: 3.7 Consensus size: 29
86722323 CGAATGATTA
*
86722333 GAGGCACTATGTATGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
86722362 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
86722391 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
86722420 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
86722439 TTTTTCAACA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:86726280 original size:40 final size:39
Alignment explanation
Indices: 86726223--86726407 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
86726213 ATTAAATGAT
* * *
86726223 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
86726263 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
* **
86726303 ATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
86726343 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
86726383 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
86726408 CGTGCATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:86726360 original size:80 final size:80
Alignment explanation
Indices: 86726222--86726428 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
86726212 AATTAAATGA
* * ** * *
86726222 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
86726287 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* * *
86726300 TAAATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
86726365 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
86726382 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
86726429 TTGTATTCTG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:86726413 original size:40 final size:39
Alignment explanation
Indices: 86726221--86726428 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
86726211 CAATTAAATG
* * ** *
86726221 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
86726261 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
* *
86726301 AAATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
86726341 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
86726381 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
86726421 ATATCCGG
1 ATATCCGG
86726429 TTGTATTCTG
Statistics
Matches: 143, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
39 5 0.03
40 133 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:86729284 original size:49 final size:49
Alignment explanation
Indices: 86729170--86729431 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
86729160 TACATATATG
* * * * *
86729170 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86729217 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86729266 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86729315 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
86729364 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
86729413 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
86729432 TAATGTAAAA
Statistics
Matches: 207, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 39 0.19
49 168 0.81
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:86729583 original size:37 final size:37
Alignment explanation
Indices: 86729527--86729654 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
86729517 AAACTTGGAA
*
86729527 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
86729565 TATGACCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86729602 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
86729639 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
86729655 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:86731137 original size:49 final size:49
Alignment explanation
Indices: 86731077--86731178 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
86731067 GTATTCTTGA
*
86731077 AAGTATCGCCTTGGAAGGAAGTTCTCCAAATTGATCGCAAAGGAAAACT
1 AAGTATCGCCTTGGAAGAAAGTTCTCCAAATTGATCGCAAAGGAAAACT
*
86731126 AAGTATCGCCTTGGAAGAAAGTTCTCCAATTTGATCGCAAAGGAAAACT
1 AAGTATCGCCTTGGAAGAAAGTTCTCCAAATTGATCGCAAAGGAAAACT
86731175 AAGT
1 AAGT
86731179 CCACGGTTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (49 bp):
AAGTATCGCCTTGGAAGAAAGTTCTCCAAATTGATCGCAAAGGAAAACT
Found at i:86743143 original size:17 final size:19
Alignment explanation
Indices: 86743099--86743144 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
86743089 CAATGCACAT
*
86743099 GCCCGTGTGTTTGGGACAC
1 GCCCGTGTGCTTGGGACAC
86743118 GCCCGTGTGCTTGGGACAC
1 GCCCGTGTGCTTGGGACAC
*
86743137 GCCTGTGT
1 GCCCGTGT
86743145 CCCTTACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.28, G:0.37, T:0.26
Consensus pattern (19 bp):
GCCCGTGTGCTTGGGACAC
Found at i:86751347 original size:99 final size:101
Alignment explanation
Indices: 86751161--86751393 Score: 294
Period size: 99 Copynumber: 2.3 Consensus size: 101
86751151 ATCTATTGTG
* *
86751161 AGGTCACATGTGTAGTACTAAGTGCAGGCTAGTATGCATACCCGAAAACTATGATCACGTGTGTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCCGAAAACTATGATCACGTGTGTA
* **
86751226 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** * ** * *
86751262 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCTGGATAA-T-TGGTCACGTGTGTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCCGAAAACTATGATCACGTGTGTA
*
86751325 GTACTAAGTGCAGGCTATTACGTGTACCAGATAATT
66 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
86751361 -GGTCGA-ATGTGTAGTACTATGTGCAGGCTACTA
1 AGGTC-ACATGTGTAGTACTAAGTGCAGGCTACTA
86751394 TGCGTACCAG
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
98 29 0.25
99 46 0.40
100 1 0.01
101 39 0.34
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (101 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCCGAAAACTATGATCACGTGTGTA
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:86751401 original size:49 final size:49
Alignment explanation
Indices: 86751162--86751406 Score: 276
Period size: 49 Copynumber: 4.9 Consensus size: 49
86751152 TCTATTGTGA
* * * ** * *
86751162 GGTCACATGTGTAGTACTAAGTGCAGGCTAGTATGCATACCCGAAAACTAT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * **
86751213 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* **
86751262 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCTGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
86751312 GGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
86751361 GGTCGA-ATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTC-ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
86751407 GCTTTGGCTA
Statistics
Matches: 165, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 85 0.52
50 44 0.27
51 36 0.22
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:86754408 original size:15 final size:15
Alignment explanation
Indices: 86754388--86754452 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
86754378 GTATCTTGGG
86754388 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
86754403 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
86754418 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
86754433 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
86754447 TTTCTT
1 TTTCTT
86754453 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86754418 original size:30 final size:31
Alignment explanation
Indices: 86754384--86754452 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
86754374 TATCGTATCT
86754384 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
86754414 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
86754444 -GGTTTTCTT
1 TGGGTTTCTT
86754453 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:86756747 original size:48 final size:48
Alignment explanation
Indices: 86756583--86756804 Score: 295
Period size: 48 Copynumber: 4.5 Consensus size: 48
86756573 TGAGGTCGCA
* * *
86756583 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAA-T-TGGTCACG
* **
86756633 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAATT-GGTCACG
86756683 TGTGTAGTACTAAGTGCAGGCTACTAC-TGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGTCACG
* *
86756731 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCACG
*
86756779 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86756805 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
48 72 0.46
49 16 0.10
50 67 0.43
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCACG
Found at i:86756849 original size:98 final size:100
Alignment explanation
Indices: 86756575--86756824 Score: 339
Period size: 98 Copynumber: 2.5 Consensus size: 100
86756565 ATCTATTGTG
* * * *
86756575 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGTGATCACGTGTGTAG
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTTGGTCACGTGTGTAG
**
86756640 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* * * *
86756675 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA--CTGTACCGGATA-ATTGGTCACGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCAGATACTTTGGTCACGTGTGTA
*
86756737 GTACTAAGTGCAGGCTACTACGTGTA-CCGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
*
86756772 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTTGG
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA-CTTTGG
86756825 CTACAAGTGT
Statistics
Matches: 130, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
96 30 0.23
97 15 0.12
98 41 0.32
99 12 0.09
100 32 0.25
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTTGGTCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:86775220 original size:43 final size:44
Alignment explanation
Indices: 86775157--86775282 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 44
86775147 ACATAGGATT
* *
86775157 TCGATATGAGATTT-TGTGTAAGACCATGTCT-GGACGTTGGCA
1 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACGTTGGCA
*
86775199 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGATAG-TGGCA
1 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGA-CGTTGGCA
* *
86775243 TCGATATT-TGA-TTACATGTAAGACCATGTCTGGGACGTTG
1 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACGTTG
86775283 TCATTGTACG
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 14 0.19
43 41 0.56
44 15 0.21
45 3 0.04
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (44 bp):
TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:86780162 original size:42 final size:43
Alignment explanation
Indices: 86780070--86780223 Score: 138
Period size: 42 Copynumber: 3.6 Consensus size: 43
86780060 TCTGAGGCAT
* *
86780070 CATGTAAGACCGTGTCTGGGACA-CAGGCCTCG--ATTGAGATTA
1 CATGTAAGACCATGTCTGGGACATC-GGCATCGATATTGA-ATTA
* * *
86780112 CGTATAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTT
1 CATGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGAATTA
* * **
86780154 CATGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTA
1 CATGTAAGACCATGTCTGGGACATCGGCATCGATATTGAATTA
* * *
86780197 CATGTAAGACCACGTCCGGGACGTCGG
1 CATGTAAGACCATGTCTGGGACATCGG
86780224 TATTGTACTT
Statistics
Matches: 87, Mismatches: 19, Indels: 11
0.74 0.16 0.09
Matches are distributed among these distances:
42 55 0.63
43 30 0.34
44 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACATCGGCATCGATATTGAATTA
Found at i:86784982 original size:44 final size:43
Alignment explanation
Indices: 86784920--86785004 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 43
86784910 GATTCCGATA
*
86784920 TGAGATTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT
1 TGAGATTTCGTGTAAGACCACGTCTAGGACAG-TGGCATCGACT
* **
86784963 TGAGATTTATGTGTAAGACCTTGTCTAGGACAGTGGCATCGA
1 TGAGATTT-CGTGTAAGACCACGTCTAGGACAGTGGCATCGA
86785005 TATTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 8 0.22
44 27 0.75
45 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCACGTCTAGGACAGTGGCATCGACT
Found at i:86789736 original size:47 final size:47
Alignment explanation
Indices: 86789661--86790067 Score: 397
Period size: 47 Copynumber: 8.7 Consensus size: 47
86789651 TGGGTAAGGT
*
86789661 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTTATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAA
** *
86789708 GTTGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATCTCA-A
* * * *
86789756 GTCGATG-CATGTCACAGACAT-GTCTTACACTGGCTTATGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTC-AA
* * **
86789802 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATATCTCAA
* * *
86789847 TGCCGAGGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAA
* * *
86789895 GTCGATGCCATGTCTCAGACATGGTCTTACACTGAC-TATCATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATCTCA-A
* ** *
86789943 GCCGATG-CATGTCCCAGGCAT-GTCTTACACTGGCTTACGTCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAA
* * * *
86789988 GCCTGAT-ACATGTCCAAGACAT-GTCTTACACTAGCTCT-CATCTCAA
1 GCC-GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATATCTCAA
*
86790034 TGCCGATGCCATGTCCCAAACATGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
86790068 AGCTCACAAA
Statistics
Matches: 299, Mismatches: 43, Indels: 35
0.79 0.11 0.09
Matches are distributed among these distances:
45 5 0.02
46 116 0.39
47 135 0.45
48 43 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAA
Found at i:86789987 original size:187 final size:187
Alignment explanation
Indices: 86789660--86790073 Score: 677
Period size: 187 Copynumber: 2.2 Consensus size: 187
86789650 GTGGGTAAGG
* * *
86789660 TGCCGATGCCATGTCCCAGACATGATCTTACACTGGCTTATATCTCAAGTTGATGCCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCA
*
86789725 GACATGGTCTTACACTGACTATCATCTCATAGTCGATGCATGTCACAGACATGTCTTACACTGGC
66 GACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCACAGACATGTCTTACACTGGC
* * * *
86789790 TTATGTCTCGAGGCC-GATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAA
131 TTACGTCTCGA-GCCTGATACATGTCCAAGACATGTCTTACACTAGCTCTCATCTCAA
* * *
86789847 TGCCGAGGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCA
* *
86789912 GACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCCAGGCATGTCTTACACTGGC
66 GACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCACAGACATGTCTTACACTGGC
86789977 TTACGTCTCGAGCCTGATACATGTCCAAGACATGTCTTACACTAGCTCTCATCTCAA
131 TTACGTCTCGAGCCTGATACATGTCCAAGACATGTCTTACACTAGCTCTCATCTCAA
* *
86790034 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
86790074 CAAACAAATG
Statistics
Matches: 209, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
186 3 0.01
187 206 0.99
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (187 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCA
GACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCACAGACATGTCTTACACTGGC
TTACGTCTCGAGCCTGATACATGTCCAAGACATGTCTTACACTAGCTCTCATCTCAA
Found at i:86790000 original size:140 final size:140
Alignment explanation
Indices: 86789661--86790067 Score: 456
Period size: 140 Copynumber: 2.9 Consensus size: 140
86789651 TGGGTAAGGT
** *
86789661 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTTATATCTCAAG-TTGATGCCATGTCCCA
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTACGTCTCAAGCCTGAT-CCATGTCCCA
*
86789725 GACATGGTCTTACACTGACT-ATCATCTCATAGTCGATG-CATGTCACAGACAT-GTCTTACACT
63 GACA-GGTCTTACACTGGCTCATCATCTCA-AGTCGATGCCATGTCACAGACATGGTCTTACACT
* * *
86789787 GGCTTATGTCTCGAG
126 GACTTATATCTCGAA
* * *
86789802 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCAATGCC-GAGGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAA-GCCTGA-TCCATGTCCCA
*
86789865 GACACGGTCTTACACTGGCTCAT-ATCTCAAGTCGATGCCATGTCTCAGACATGGTCTTACACTG
63 GACA-GGTCTTACACTGGCTCATCATCTCAAGTCGATGCCATGTCACAGACATGGTCTTACACTG
86789929 AC-TATCATCTC-ATA
127 ACTTAT-ATCTCGA-A
* * * *
86789943 GCCGATGCATGTCCCAGGCATGTCTTACACTGGCTTACGTCTCGAGCCTGATACATGTCCAAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGCCTGATCCATGTCCCAGAC
* * * * *
86790008 ATGTCTTACACTAGCTC-TCATCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACT
66 AGGTCTTACACTGGCTCATCATCTCAA-GTCGATGCCATGTCACAGACATGGTCTTACACT
86790068 AGCTCACAAA
Statistics
Matches: 229, Mismatches: 24, Indels: 27
0.82 0.09 0.10
Matches are distributed among these distances:
138 1 0.00
139 47 0.21
140 115 0.50
141 66 0.29
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGCCTGATCCATGTCCCAGAC
AGGTCTTACACTGGCTCATCATCTCAAGTCGATGCCATGTCACAGACATGGTCTTACACTGACTT
ATATCTCGAA
Found at i:86795306 original size:47 final size:48
Alignment explanation
Indices: 86795235--86795693 Score: 398
Period size: 47 Copynumber: 9.8 Consensus size: 48
86795225 TGAGTAAGGT
*
86795235 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * **
86795282 GTCGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAA
* * * * *
86795330 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA-CGTTTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ATCTCAA
* * * *
86795376 GCCGAT-ACATGTCCGAGACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* *
86795421 TACCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * *
86795469 GTCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-A
* * * *
86795517 GCCGATG-CAAGTCCCAGGCAT-GTCTTACACTGGCTTA-CGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * * *
86795562 GGCTGATG-AATGTCCAAGACAT-GTCTTACACTAGCTC-TCCTCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * ***
86795608 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAA
* *
86795657 GCCGATG-CGTGTCCCAGACAT-GTCTTACACTAGCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
86795694 CAAACAAATG
Statistics
Matches: 336, Mismatches: 57, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
45 4 0.01
46 134 0.40
47 137 0.41
48 59 0.18
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:86795575 original size:140 final size:139
Alignment explanation
Indices: 86795235--86795687 Score: 415
Period size: 140 Copynumber: 3.2 Consensus size: 139
86795225 TGAGTAAGGT
* * ** * * *
86795235 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGACGATGCAATGTCCAAG
* **
86795300 ACATGGTCTTACACTGACT-ATCATCTTGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACT-
64 ACATGGTCTTACACTGGCTCATCATC-TCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTG
*
86795361 AGC-TCA-CGTTTTGA
128 A-CTTCATC--TAT-A
* * * * * *
86795375 GGCCGATACATGTCCGAGACATGTCTTACACTAGCTCT-CGTCTCAATACCGATGCTATGTCCCA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAAGA-CGATGCAATGTCCAA
* *
86795439 GACATGGTCTTACACTGGCTCAT-ATCTCAAGTCGATGCCATGTCCCAAACATGGTCTTACACTG
63 GACATGGTCTTACACTGGCTCATCATCTCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTG
86795503 ACTATCATCTCATA
128 ACT-TCATCT-ATA
* * *
86795517 GCCGATGCAAGTCCCAGGCATGTCTTACACTGGCTTACGTCTCAAGGCTGATG-AATGTCCAAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGAC-GATGCAATGTCCAAGA
* * * *
86795581 CAT-GTCTTACACTAGCTC-TCCTCTCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGG
65 CATGGTCTTACACTGGCTCATCATCTCAA-GCCGATGCCATGTCCCAGACATGGTCTTACACTGA
* * *
86795644 CTCTCATAATGTG
129 CT-TCAT-CTATA
*
86795657 GCCGATGCGTGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
86795688 AGCTCACAAA
Statistics
Matches: 258, Mismatches: 39, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
138 1 0.00
139 47 0.18
140 140 0.54
141 62 0.24
142 3 0.01
143 4 0.02
144 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (139 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGACGATGCAATGTCCAAGAC
ATGGTCTTACACTGGCTCATCATCTCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT
TCATCTATA
Found at i:86795584 original size:187 final size:187
Alignment explanation
Indices: 86795236--86795646 Score: 644
Period size: 187 Copynumber: 2.2 Consensus size: 187
86795226 GAGTAAGGTG
* * *
86795236 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
** *
86795301 CATGGTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
66 CATGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTAGCTC
* ** * *
86795366 ACGTTTTGAGGCCGATACATGTCCGAGACATGTCTTACACTAGCTCTCGTCTCAATA
131 ACGTCTCAAGGCCGATACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATA
*
86795423 CCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
* * *
86795488 CATGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGGCATGTCTTACACTGGCTT
66 CATGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTAGCTC
* *
86795553 ACGTCTCAAGGCTGATGA-ATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATG
131 ACGTCTCAAGGCCGAT-ACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATA
*
86795610 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
86795647 TCATAATGTG
Statistics
Matches: 204, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
187 203 1.00
188 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (187 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
CATGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTAGCTC
ACGTCTCAAGGCCGATACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATA
Found at i:86798476 original size:46 final size:46
Alignment explanation
Indices: 86798407--86798573 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
86798397 TTATTTATGT
86798407 GTCAGTGTAAGACATATCTGGGACATGCATCGGCATCGAGATGTAA
1 GTCAGTGTAAGACATATCTGGGACATGCATCGGCATCGAGATGTAA
* * *
86798453 GCCAGTGTAAGATATGTCTGGGACATGCATCGGC-TACGAGATGT--
1 GTCAGTGTAAGACATATCTGGGACATGCATCGGCAT-CGAGATGTAA
* * * *
86798497 GTCAGTGTAAGATCATATCTAGGACATGGCATTGGCATAGATATGTGAGA
1 GTCAGTGTAAGA-CATATCTGGGACAT-GCATCGGCATCGAGATGT-A-A
* *
86798547 GTTAGTGTAAGACCATGTCTGGGACAT
1 GTCAGTGTAAGA-CATATCTGGGACAT
86798574 CGTGTCAGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
44 11 0.11
45 12 0.12
46 52 0.53
47 1 0.01
50 23 0.23
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (46 bp):
GTCAGTGTAAGACATATCTGGGACATGCATCGGCATCGAGATGTAA
Found at i:86800130 original size:79 final size:80
Alignment explanation
Indices: 86800047--86800194 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 80
86800037 TATGGTAACC
* * *
86800047 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
86800110 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
86800126 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
86800191 CCGG
66 CCGG
86800195 TTATAATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
78 1 0.02
79 30 0.53
80 26 0.46
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:86800139 original size:40 final size:40
Alignment explanation
Indices: 86800087--86800194 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
86800077 TATCACGATT
** *
86800087 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
86800127 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
86800167 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
86800195 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:86810097 original size:21 final size:21
Alignment explanation
Indices: 86810067--86810109 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
86810057 CACGGCCTGC
*
86810067 CCACACGGGCATGTCCCATAT
1 CCACACGGGCATCTCCCATAT
* *
86810088 CCACATGGGCGTCTCCCATAT
1 CCACACGGGCATCTCCCATAT
86810109 C
1 C
86810110 TATACAGGCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.40, G:0.19, T:0.21
Consensus pattern (21 bp):
CCACACGGGCATCTCCCATAT
Found at i:86816000 original size:43 final size:43
Alignment explanation
Indices: 86815939--86816027 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
86815929 CGTCCTACCA
86815939 GTGATAGGGTATTTCAGCATATGTAGCGAATGCCTAACAGCTT
1 GTGATAGGGTATTTCAGCATATGTAGCGAATGCCTAACAGCTT
86815982 GTGATAGGGTATTTCAGCATATGTAGCGAATGCCTAACAGCTT
1 GTGATAGGGTATTTCAGCATATGTAGCGAATGCCTAACAGCTT
86816025 GTG
1 GTG
86816028 TGAGCAGCAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGATAGGGTATTTCAGCATATGTAGCGAATGCCTAACAGCTT
Found at i:86818289 original size:47 final size:47
Alignment explanation
Indices: 86818217--86818538 Score: 459
Period size: 47 Copynumber: 6.7 Consensus size: 47
86818207 CCCTTCGGGA
* * * * * * *
86818217 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
86818265 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
86818311 CTTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 C-TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86818361 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86818408 CTTATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86818455 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86818502 CTTATCACATATATATACACCTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
86818539 AAAATCCTAA
Statistics
Matches: 252, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 173 0.69
48 7 0.03
49 34 0.13
50 36 0.14
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86818417 original size:22 final size:22
Alignment explanation
Indices: 86818389--86818464 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
86818379 TTTCACATTC
86818389 ATCACATCAGCCATTAGGCCTT
1 ATCACATCAGCCATTAGGCCTT
** *** *
86818411 ATCACATCTATACACTTTCACATT
1 ATCACATC-AGCCA-TTAGGCCTT
*
86818435 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCAGCCATTAGGCCTT
86818458 ATCACAT
1 ATCACAT
86818465 ATATACACTT
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 15 0.39
23 8 0.21
24 7 0.18
25 8 0.21
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACATCAGCCATTAGGCCTT
Found at i:86818440 original size:25 final size:25
Alignment explanation
Indices: 86818364--86818443 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
86818354 ATTAGGCCTT
*
86818364 ATCACATATATACACTTTCACATTC
1 ATCACATCTATACACTTTCACATTC
** *** *
86818389 ATCACATC-AGCCA-TTAGGCCTT-
1 ATCACATCTATACACTTTCACATTC
86818411 ATCACATCTATACACTTTCACATTC
1 ATCACATCTATACACTTTCACATTC
86818436 ATCACATC
1 ATCACATC
86818444 GGCCATTAGG
Statistics
Matches: 39, Mismatches: 13, Indels: 6
0.67 0.22 0.10
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
ATCACATCTATACACTTTCACATTC
Found at i:86822187 original size:43 final size:43
Alignment explanation
Indices: 86822074--86822241 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
86822064 CATATAGCTC
* * * * * *
86822074 GTACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACA
1 GTACAATGCCAATGTCCCAAACATGGTCTTACAAGTAATCTCA
* * * * * * *
86822116 -TATCAATTCCACTTTCCTAGACAGGGTCTTACAAGTAAT-TGA
1 GTA-CAATGCCAATGTCCCAAACATGGTCTTACAAGTAATCTCA
* * *
86822158 TTAACGATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCA
1 GT-ACAATGCCAATGTCCCAAACATGGTCTTACAAGTAATCTCA
* *
86822202 GTACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 GTACAATGCCAATGTCCCAAACATGGTCTTACAAGTAATC
86822242 ACATCTCTGT
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 85 0.87
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
GTACAATGCCAATGTCCCAAACATGGTCTTACAAGTAATCTCA
Found at i:86826647 original size:20 final size:20
Alignment explanation
Indices: 86826622--86826661 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
86826612 CCTTTTTAGG
* *
86826622 GTAAAAATTTTTTAAGTTTT
1 GTAAAAATTTCTAAAGTTTT
86826642 GTAAAAATTTCTAAAGTTTT
1 GTAAAAATTTCTAAAGTTTT
86826662 CAGTTTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.50
Consensus pattern (20 bp):
GTAAAAATTTCTAAAGTTTT
Found at i:86833087 original size:88 final size:91
Alignment explanation
Indices: 86832918--86833090 Score: 253
Period size: 88 Copynumber: 1.9 Consensus size: 91
86832908 AAAAACCCTC
* *
86832918 AAACTTTTTCAAAAAAAGCAATTAAGCCCTTCCTCTTTTCTTTTTCACTCAATTGAGCACTTGAA
1 AAACTTCTTCAAAAAAAGCAATTAAGCCCTT-CACTTTTCTTTTTCACTCAATTGAGCACTTGAA
*
86832983 CTTTCCAAATGCATAAAAAAGGCTCTT
65 CTTTCAAAATGCATAAAAAAGGCTCTT
* * *
86833010 AAACTTCTTCAAAAGAAGCAATTAAGCCC-T-ACTTTT-TTTTTCACTCAATTGGGTACTTGAAC
1 AAACTTCTTCAAAAAAAGCAATTAAGCCCTTCACTTTTCTTTTTCACTCAATTGAGCACTTGAAC
*
86833072 TTTCAAAATGTATAAAAAA
66 TTTCAAAATGCATAAAAAA
86833091 AGACCTCAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 41 0.55
89 5 0.07
91 1 0.01
92 27 0.36
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (91 bp):
AAACTTCTTCAAAAAAAGCAATTAAGCCCTTCACTTTTCTTTTTCACTCAATTGAGCACTTGAAC
TTTCAAAATGCATAAAAAAGGCTCTT
Found at i:86833149 original size:20 final size:21
Alignment explanation
Indices: 86833124--86833171 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 21
86833114 CAGCTGCTCT
86833124 TATTAAAAATTATAA-AAAAA
1 TATTAAAAATTATAATAAAAA
*
86833144 TATT--AAATTTTAATAAAAA
1 TATTAAAAATTATAATAAAAA
*
86833163 TATAAAAAA
1 TATTAAAAA
86833172 ATGTAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 8 0.35
19 8 0.35
20 4 0.17
21 3 0.13
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTAAAAATTATAATAAAAA
Found at i:86833187 original size:27 final size:30
Alignment explanation
Indices: 86833123--86833188 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
86833113 GCAGCTGCTC
*
86833123 TTATTAAAAATTATAAAAAAATATTAAATT
1 TTATTAAAAATTATAAAAAAATAGTAAATT
*
86833153 TTAATAAAAA-TATAAAAAAAT-GTAAA-T
1 TTATTAAAAATTATAAAAAAATAGTAAATT
86833180 TTATTAAAA
1 TTATTAAAA
86833189 CTAGAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.27
28 4 0.12
29 11 0.33
30 9 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (30 bp):
TTATTAAAAATTATAAAAAAATAGTAAATT
Found at i:86833447 original size:10 final size:10
Alignment explanation
Indices: 86833434--86833464 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
86833424 GTTTATAAAA
*
86833434 TTTTAAATTT
1 TTTTAAAATT
86833444 TTTTAAAATT
1 TTTTAAAATT
86833454 TTTTAAAATT
1 TTTTAAAATT
86833464 T
1 T
86833465 CTATATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:86833460 original size:28 final size:28
Alignment explanation
Indices: 86833411--86833464 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
86833401 ATTTTTGTAT
*
86833411 AATTTTCTTACAAGTTTATAAAATTTTA
1 AATTTTCTTAAAAGTTTATAAAATTTTA
* * *
86833439 AATTTTTTTAAAATTTTTTAAAATTT
1 AATTTTCTTAAAAGTTTATAAAATTT
86833465 CTATATATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (28 bp):
AATTTTCTTAAAAGTTTATAAAATTTTA
Found at i:86838885 original size:24 final size:25
Alignment explanation
Indices: 86838833--86838900 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
86838823 ATAATTAAAA
*
86838833 AAATAATATATAATATGTATCTTTATT
1 AAATAAT-TATATTAT-TATCTTTATT
*
86838860 AAATAATTATATTATTAT-TTTTTT
1 AAATAATTATATTATTATCTTTATT
86838884 AAGA-AATTATATTATTA
1 AA-ATAATTATATTATTA
86838901 AATATTTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 20 0.53
25 4 0.11
26 7 0.18
27 7 0.18
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (25 bp):
AAATAATTATATTATTATCTTTATT
Found at i:86841308 original size:2 final size:2
Alignment explanation
Indices: 86841258--86841293 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
86841248 TCTCTCTCTT
86841258 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86841294 ATCTAATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86843493 original size:37 final size:37
Alignment explanation
Indices: 86843435--86843542 Score: 153
Period size: 37 Copynumber: 2.9 Consensus size: 37
86843425 GCTCAGACGA
* *
86843435 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* **
86843472 ACTCTCCACACGTAGTCATCGGGTCTTACCCAAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
86843509 AATCTCCACACGTAGTCATCAGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86843543 ATATATTTCC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:86843664 original size:48 final size:48
Alignment explanation
Indices: 86843587--86843807 Score: 354
Period size: 48 Copynumber: 4.6 Consensus size: 48
86843577 TGTTACAACA
* *
86843587 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
**
86843635 TTCACATTCA-CCATTCGGCTTTATGACATATACATATCTCATATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
86843683 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
86843731 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
86843779 TTCACATTAGCCATTCGGCTTTATCACAT
1 TTCACATTAGCCATTCGGCTTTACCACAT
86843808 TAGCCATTCG
Statistics
Matches: 158, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
47 1 0.01
48 156 0.99
49 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:86843808 original size:22 final size:22
Alignment explanation
Indices: 86843780--86843829 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
86843770 CATATATATT
86843780 TCACATTAGCCATTCGGCTTTA
1 TCACATTAGCCATTCGGCTTTA
86843802 TCACATTAGCCATTCGGCTTTA
1 TCACATTAGCCATTCGGCTTTA
*
86843824 CCACAT
1 TCACAT
86843830 CTACATATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (22 bp):
TCACATTAGCCATTCGGCTTTA
Found at i:86843815 original size:70 final size:70
Alignment explanation
Indices: 86843732--86843877 Score: 247
Period size: 70 Copynumber: 2.1 Consensus size: 70
86843722 CACATATATT
* * *
86843732 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
86843797 CTTTA
66 CTTTA
*
86843802 TCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCGA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
86843867 CTTTA
66 CTTTA
*
86843872 CCACAT
1 TCACAT
86843878 ATTCATATCT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (70 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
CTTTA
Found at i:86843823 original size:118 final size:118
Alignment explanation
Indices: 86843684--86843925 Score: 439
Period size: 118 Copynumber: 2.1 Consensus size: 118
86843674 CATATATATT
*
86843684 TCACATTAGCCATTCGACTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGACTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
86843749 CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
66 CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
* *
86843802 TCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCGA
1 TCACATTAGCCATTCGACTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
*
86843867 CTTTACCACATATTCATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
66 CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
*
86843920 CCACAT
1 TCACAT
86843926 ATACATATCA
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 119 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (118 bp):
TCACATTAGCCATTCGACTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
Found at i:86843854 original size:48 final size:48
Alignment explanation
Indices: 86843802--86844029 Score: 393
Period size: 48 Copynumber: 4.8 Consensus size: 48
86843792 TTCGGCTTTA
*
86843802 TCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * * *
86843850 TCACATTAGCCATTCGACTTTACCACATATTCATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
86843898 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* *
86843946 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
86843994 TCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TCACATTAGCCATTCGGCTTTACCACATATACATAT
86844030 TTATCTTGTA
Statistics
Matches: 169, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 169 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
Found at i:86843897 original size:166 final size:166
Alignment explanation
Indices: 86843636--86843973 Score: 561
Period size: 166 Copynumber: 2.0 Consensus size: 166
86843626 CATACATATT
** * *
86843636 TCACATTCACCATTCGGCTTTATGACATATACATATCTCATATATATTTCACATTAGCCATTCGA
1 TCACATTCACCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
86843701 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86843766 ATCTCATATATATTTCACATTAGCCATTCGGCTTTA
131 ATCACACATATATTTCACATTAGCCATTCGGCTTTA
*
86843802 TCACATT-AGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCG
1 TCACATTCA-CCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* * *
86843866 ACTTTACCACATATTCATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
65 ACTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
86843931 TATCACACATATATTTCACATTAGCCATTCGGCTTTA
130 TATCACACATATATTTCACATTAGCCATTCGGCTTTA
*
86843968 CCACAT
1 TCACAT
86843974 ATACATATCT
Statistics
Matches: 160, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
165 1 0.01
166 159 0.99
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (166 bp):
TCACATTCACCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGA
CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
ATCACACATATATTTCACATTAGCCATTCGGCTTTA
Found at i:86843957 original size:214 final size:214
Alignment explanation
Indices: 86843588--86844021 Score: 753
Period size: 214 Copynumber: 2.0 Consensus size: 214
86843578 GTTACAACAT
* * * *
86843588 TCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCACCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTCACCATTCGA
**
86843653 CTTTATGACATATACATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
66 CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
86843718 ATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
131 ATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
86843783 CATTAGCCATTCGGCTTTA
196 CATTAGCCATTCGGCTTTA
* *
86843802 TCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATT-AGCCATTCG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTCA-CCATTCG
* *
86843866 ACTTTACCACATATTCATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
65 ACTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACA
86843931 TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTC
130 TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTC
86843996 ACATTAGCCATTCGGCTTTA
195 ACATTAGCCATTCGGCTTTA
*
86844016 CCACAT
1 TCACAT
86844022 ATACATATTT
Statistics
Matches: 208, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
213 1 0.00
214 207 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (214 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTCACCATTCGA
CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
ATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CATTAGCCATTCGGCTTTA
Found at i:86849623 original size:20 final size:20
Alignment explanation
Indices: 86849598--86849637 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
86849588 CCATACCTGG
86849598 TCATATTAGGGATTATGAGC
1 TCATATTAGGGATTATGAGC
86849618 TCATATTAGGGATTATGAGC
1 TCATATTAGGGATTATGAGC
86849638 ACATTAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (20 bp):
TCATATTAGGGATTATGAGC
Found at i:86849763 original size:40 final size:40
Alignment explanation
Indices: 86849714--86849893 Score: 306
Period size: 40 Copynumber: 4.5 Consensus size: 40
86849704 CGGATATATC
* * *
86849714 AACCAGCACGAATGCCTTTGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86849754 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
86849794 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
**
86849834 AACCCGCATAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86849874 AACCCGCACGAATGCCTTCG
1 AACCCGCACGAATGCCTTCG
86849894 CATATATATA
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86855392 original size:38 final size:38
Alignment explanation
Indices: 86855348--86855572 Score: 164
Period size: 38 Copynumber: 6.0 Consensus size: 38
86855338 TTTATTGAAG
* * *
86855348 GGTTGCGAAAGGCTTAGTCAATGCCAACCTTTAAAAAA
1 GGTTGCGAAAGACCTAGTCAAGGCCAACCTTTAAAAAA
* *
86855386 GGTTGCGATAGACCTAGTCAAGGCCAACCTTTGAAAAA
1 GGTTGCGAAAGACCTAGTCAAGGCCAACCTTTAAAAAA
* *
86855424 GGTTGTGATAGACCTA-TCTAAGG-CAACC-TT-AAAAA
1 GGTTGCGAAAGACCTAGTC-AAGGCCAACCTTTAAAAAA
* * **
86855459 GGTTGGGATAGACC-AGTCTAA-GATAACCTTTAAAAAA
1 GGTTGCGAAAGACCTAGTC-AAGGCCAACCTTTAAAAAA
* * * * *
86855496 AGTTGGGATAGACCATA-TCTAAGG-AAACATTTAAAAAA
1 GGTTGCGAAAGACC-TAGTC-AAGGCCAACCTTTAAAAAA
* *
86855534 AGTTGCGATAA-ACCTTGTCTAAGG-CAACCTTTAAAAAA
1 GGTTGCGA-AAGACCTAGTC-AAGGCCAACCTTTAAAAAA
86855572 G
1 G
86855573 ATTAGGATAG
Statistics
Matches: 160, Mismatches: 17, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
34 2 0.01
35 27 0.17
36 4 0.03
37 26 0.16
38 98 0.61
39 3 0.02
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (38 bp):
GGTTGCGAAAGACCTAGTCAAGGCCAACCTTTAAAAAA
Found at i:86855563 original size:76 final size:75
Alignment explanation
Indices: 86855373--86856079 Score: 420
Period size: 73 Copynumber: 9.7 Consensus size: 75
86855363 AGTCAATGCC
* * * * *
86855373 AACCTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGGCCAACCTTTGAAAAAGGTTGTGATAGAC
1 AACC-TTAAAAAAGGTTGGGATAGACCTTGTCTAAGG-CAACCTTTAAAAAAAGTTGGGATAGAC
*
86855437 C-TATCTAAGGC
64 CATATCTAAGGA
* **
86855448 AACCTT-AAAAAGGTTGGGATAGACC-AGTCTAAGATAACCTTTAAAAAAAGTTGGGATAGACCA
1 AACCTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCA
86855511 TATCTAAGGA
66 TATCTAAGGA
* * * * *
86855521 AACATTTAAAAAAAGTTGCGATAAACCTTGTCTAAGGCAACCTTT-AAAAAAGATTAGGATAGA-
1 AAC-CTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAG-TTGGGATAGAC
* *
86855584 -ATCGTCTAA-AA
64 CAT-ATCTAAGGA
* * *
86855595 CAACCTT-AAATAGGTTGGTG-TAGACCTTGTCTAGGGCAACCTTTAAAAAAGGTTGGGATAGAC
1 -AACCTTAAAAAAGGTTGG-GATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGAC
* *
86855658 CTTATCTAAGGG
64 CATATCTAAGGA
* ** * * * *
86855670 AACCTTTTAAAAATATTGGGATAGACCTTGTCTAAGGAAACATTTAAAAAAGGTTGGGATAGATC
1 AACC-TTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACC
* * * *
86855735 TTGTTTAAGGC
65 ATATCTAAGGA
* **
86855746 AACCTTAAAAAAGGGTTGGGATAGA-CTTGTTTAAGGCAACC-TTAAAAAAAGGTTACGATAGA-
1 AACCTTAAAAAA-GGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAA-GTTGGGATAGAC
* * *
86855808 -ATTGTCTAAAGC
64 CA-TATCTAAGGA
* * ** * * *
86855820 AACCTT-AAAAAGGTTGGGATAGA--TTCATCTAAGGTAACC--TCCAAAAGGTTGGAATAGATC
1 AACCTTAAAAAAGGTTGGGATAGACCTT-GTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACC
* * * *
86855880 TTGTCTAAAGC
65 ATATCTAAGGA
* * * * * * *
86855891 AACTTTTAGAAAAGGTTGGGATTGACC-TATCTAAGACAA-CGTT-AAAAATGTTGGGATAGACC
1 AAC-CTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGA-C
86855953 CAT-T-TACA--A
64 CATATCTA-AGGA
* * * * *
86855962 CAACCTTAAAAAA-GTTGAGATAGACCTTTTCCAAGACAA-C-TTAAAAAAAGTTGGGATAAACC
1 -AACCTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGA-C
* *
86856024 CGT-T-TAAGGC
64 CATATCTAAGGA
* * * *
86856034 AACCTTAAAAAA-GTTAGGATAAACC-CGTCTAAGGCAAAC-TTAAAAA
1 AACCTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAA
86856080 GGTCGAGATA
Statistics
Matches: 507, Mismatches: 89, Indels: 76
0.75 0.13 0.11
Matches are distributed among these distances:
70 30 0.06
71 90 0.18
72 58 0.11
73 117 0.23
74 51 0.10
75 68 0.13
76 93 0.18
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (75 bp):
AACCTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCA
TATCTAAGGA
Found at i:86855657 original size:38 final size:38
Alignment explanation
Indices: 86855372--86856079 Score: 530
Period size: 38 Copynumber: 19.3 Consensus size: 38
86855362 TAGTCAATGC
* *
86855372 CAACCTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * *
86855409 CCAACCTTTGAAAAAGGTTGTGATAGACC-TATCTAAGG
1 -CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* *
86855447 CAACC-TT-AAAAAGGTTGGGATAGACC-AGTCTAAGA
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * *
86855482 TAACCTTTAAAAAAAGTTGGGATAGACCATATCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * * *
86855520 AAACATTTAAAAAAAGTTGCGATAAACCTTGTCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * * **
86855558 CAACCTTTAAAAAAGATTAGGATAGA-ATCGTCTAAAA
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* *
86855595 CAACC-TT-AAATAGGTTGGTG-TAGACCTTGTCTAGGG
1 CAACCTTTAAAAAAGGTTGG-GATAGACCTTGTCTAAGG
*
86855631 CAACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * **
86855669 GAACCTTTTAAAAATATTGGGATAGACCTTGTCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * *
86855707 AAACATTTAAAAAAGGTTGGGATAGATCTTGTTTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
*
86855745 CAACC-TTAAAAAAGGGTTGGGATAGA-CTTGTTTAAGG
1 CAACCTTTAAAAAA-GGTTGGGATAGACCTTGTCTAAGG
* ** * *
86855782 CAACCTTAAAAAAAGGTTACGATAGA-ATTGTCTAAAG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
*
86855819 CAACC-TT-AAAAAGGTTGGGATAGA--TTCATCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTT-GTCTAAGG
* ** * * *
86855854 TAACC--TCCAAAAGGTTGGAATAGATCTTGTCTAAAG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * * *
86855890 CAACTTTTAGAAAAGGTTGGGATTGACC-TATCTAAGA
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* *
86855927 CAA-CGTT-AAAAATGTTGGGATAGACCCATT-TAC-AA--
1 CAACCTTTAAAAAAGGTTGGGATAGA-CC-TTGT-CTAAGG
* * * *
86855962 CAACC-TTAAAAAA-GTTGAGATAGACCTTTTCCAAGA
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * * *
86855998 CAA-C-TTAAAAAAAGTTGGGATAAACC-CGTTTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
* * *
86856033 CAACC-TTAAAAAA-GTTAGGATAAACC-CGTCTAAGG
1 CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
*
86856068 CAAAC-TTAAAAA
1 CAACCTTTAAAAA
86856080 GGTCGAGATA
Statistics
Matches: 544, Mismatches: 97, Indels: 61
0.77 0.14 0.09
Matches are distributed among these distances:
33 3 0.01
34 8 0.01
35 156 0.29
36 61 0.11
37 101 0.19
38 215 0.40
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (38 bp):
CAACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG
Found at i:86855770 original size:187 final size:183
Alignment explanation
Indices: 86855423--86855842 Score: 488
Period size: 187 Copynumber: 2.3 Consensus size: 183
86855413 CCTTTGAAAA
*
86855423 AGGTTGTGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGATAACCT
1 AGGTTGTGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGAGAACCT
86855488 TTAAAAAAAGTTGGGATAGACCATATCTAAGGAAACATTTAAAAAAAGTTGCGATAAACCTTGTC
66 TTAAAAAAAGTTGGGATAGACCATATCTAAGGAAACATTTAAAAAAAGTTGCGATAAACCTTGTC
86855553 TAAGGCAACCTTTAAAAAAGATTAGGATAGAATCGTCTAAAACAACCTTAAAT
131 TAAGGCAACCTTTAAAAAAGATTAGGATAGAATCGTCTAAAACAACCTTAAAT
* * *
86855606 AGGTTGGTG-TAGACCTTGTCTAGGGCAACCTTTAAAAAAGGTTGGGATAGACCTTA-TCTAAGG
1 AGGTT-GTGATAGACC-TATCTAAGGCAACC-TT-AAAAAGGTTGGGATAGACC--AGTCTAAGA
* * * * * *
86855669 GAACCTTTTAAAAATA-TTGGGATAGACCTTGTCTAAGGAAACATTTAAAAAAGGTTGGGATAGA
60 GAACC-TTTAAAAAAAGTTGGGATAGACCATATCTAAGGAAACATTTAAAAAAAGTTGCGATAAA
* * * * * * * ** *
86855733 TCTTGTTTAAGGCAACC-TTAAAAAAGGGTTGGGATAGACTTGTTTAAGGCAACCTTAAAAAA
124 CCTTGTCTAAGGCAACCTTTAAAAAA-GATTAGGATAGAATCGTCTAAAACAACCTT--AAAT
** ** * *
86855795 AGGTTACGATAGAATTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGA
1 AGGTTGTGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGA
86855843 TTCATCTAAG
Statistics
Matches: 200, Mismatches: 26, Indels: 19
0.82 0.11 0.08
Matches are distributed among these distances:
183 11 0.05
184 15 0.08
185 2 0.01
186 44 0.22
187 93 0.47
188 23 0.12
189 12 0.06
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (183 bp):
AGGTTGTGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGAGAACCT
TTAAAAAAAGTTGGGATAGACCATATCTAAGGAAACATTTAAAAAAAGTTGCGATAAACCTTGTC
TAAGGCAACCTTTAAAAAAGATTAGGATAGAATCGTCTAAAACAACCTTAAAT
Found at i:86855842 original size:259 final size:257
Alignment explanation
Indices: 86855372--86856079 Score: 644
Period size: 259 Copynumber: 2.8 Consensus size: 257
86855362 TAGTCAATGC
* * * *
86855372 CAACCTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGGCCAACCTTTGAAAAAGGTTGTGATAGA
1 CAACCTTTAAAAAAGGTTGGGATAGACCTA-TCTAAGG-CAACCTTTTAAAAATGTTGGGATAGA
* *
86855436 CCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGATAACCTTTAAAAAAAGTTG
64 CCTATCTAAGGAAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGACAACCTTTAAAAAAAGTTG
* * *
86855501 GGATAGACCATATCTAAGGAAACATTTAAAAAAAGTTGCGATAAACCTTGTCTAAGGCAACCTTT
129 GGATAGACCATATCTAAGGAAACACTTAAAAAAAGTTACGATAAA-CTTGTCTAAAGCAACCTTT
* * ** **
86855566 AAAAAAGATTAGGATAGAATCGTCTAAAACAACCT-TAAATAGGTTGGTGTAGACCTTGTCTAGG
193 AAAAAAGATTAGGATAGAATCATCTAAAACAACCTCCAAA-AGGTTGGAATAGACCTTGTCTAAA
86855630 G
257 G
* *
86855631 CAACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGGAACCTTTTAAAAATATTGGGATAGAC
1 CAACCTTTAAAAAAGGTTGGGATAGACC-TATCTAAGGCAACCTTTTAAAAATGTTGGGATAGAC
* * ** * * *
86855696 CTTGTCTAAGGAAACATTTAAAAAAGGTTGGGATAGATCTTGTTTAAGGCAACC-TTAAAAAAGG
65 C-TATCTAAGGAAAC-CTT-AAAAAGGTTGGGATAGA-CCAGTCTAAGACAACCTTTAAAAAA-A
* * * *
86855760 GTTGGGATAGA-CTTGTTTAAGGCAAC-CTTAAAAAAAGGTTACGATAGAA-TTGTCTAAAGCAA
125 GTTGGGATAGACCATATCTAAGGAAACACTTAAAAAAA-GTTACGATA-AACTTGTCTAAAGCAA
* * * *** *
86855822 CC-TT-AAAAAGGTTGGGATAGATTCATCTAAGGTAACCTCCAAAAGGTTGGAATAGATCTTGTC
188 CCTTTAAAAAAGATTAGGATAGAATCATCTAAAACAACCTCCAAAAGGTTGGAATAGACCTTGTC
86855885 TAAAG
253 TAAAG
* * * * *
86855890 CAACTTTTAGAAAAGGTTGGGATTGACCTATCTAAGACAA-C-GTTAAAAATGTTGGGATAGACC
1 CAACCTTTAAAAAAGGTTGGGATAGACCTATCTAAGGCAACCTTTTAAAAATGTTGGGATAGACC
* * * * ** *
86855953 CATTTACA--ACAACCTTAAAAAAGTTGAGATAGACCTTTTCCAAGACAA-C-TTAAAAAAAGTT
66 TATCTA-AGGA-AACCTTAAAAAGGTTGGGATAGACC-AGTCTAAGACAACCTTTAAAAAAAGTT
* * * * ** * *
86856014 GGGATAAACCCGT-T-TAAGGCAAC-CTT-AAAAAAGTTAGGATAAACCCGTCTAAGGCAAAC-T
128 GGGATAGA-CCATATCTAAGGAAACACTTAAAAAAAGTTACGATAAACTTGTCTAAAGCAACCTT
86856074 TAAAAA
192 TAAAAA
86856080 GGTCGAGATA
Statistics
Matches: 371, Mismatches: 61, Indels: 43
0.78 0.13 0.09
Matches are distributed among these distances:
248 2 0.01
249 21 0.06
250 10 0.03
251 22 0.06
252 11 0.03
253 25 0.07
254 3 0.01
255 6 0.02
256 21 0.06
257 1 0.00
258 10 0.03
259 124 0.33
260 22 0.06
261 25 0.07
262 44 0.12
263 24 0.06
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (257 bp):
CAACCTTTAAAAAAGGTTGGGATAGACCTATCTAAGGCAACCTTTTAAAAATGTTGGGATAGACC
TATCTAAGGAAACCTTAAAAAGGTTGGGATAGACCAGTCTAAGACAACCTTTAAAAAAAGTTGGG
ATAGACCATATCTAAGGAAACACTTAAAAAAAGTTACGATAAACTTGTCTAAAGCAACCTTTAAA
AAAGATTAGGATAGAATCATCTAAAACAACCTCCAAAAGGTTGGAATAGACCTTGTCTAAAG
Found at i:86856074 original size:71 final size:71
Alignment explanation
Indices: 86855923--86856079 Score: 169
Period size: 71 Copynumber: 2.2 Consensus size: 71
86855913 TGACCTATCT
* * *
86855923 AAGACAACGTT-AAAAATGTTGGGATAGACCCATTTACAACAACCTTAAAAAAGTTGAGATAGAC
1 AAGACAAC-TTAAAAAAAGTTGGGATAAACCCATTTACAACAACCTTAAAAAAGTTGAGATAAAC
**
86855987 CTTTTCC
65 CTCGTCC
* *
86855994 AAGACAACTTAAAAAAAGTTGGGATAAACCCGTTTA-AGGCAACCTTAAAAAAGTT-AGGATAAA
1 AAGACAACTTAAAAAAAGTTGGGATAAACCCATTTACA-ACAACCTTAAAAAAGTTGA-GATAAA
*
86856057 CC-CGTCT
64 CCTCGTCC
*
86856064 AAGGCAAACTTAAAAA
1 AAGAC-AACTTAAAAA
86856080 GGTCGAGATA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
70 10 0.14
71 63 0.86
ACGTcount: A:0.45, C:0.17, G:0.16, T:0.22
Consensus pattern (71 bp):
AAGACAACTTAAAAAAAGTTGGGATAAACCCATTTACAACAACCTTAAAAAAGTTGAGATAAACC
TCGTCC
Found at i:86865722 original size:18 final size:20
Alignment explanation
Indices: 86865699--86865738 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
86865689 AAGGGAGAAT
86865699 AAAG-AAATG-GAAAAAAAA
1 AAAGAAAATGAGAAAAAAAA
86865717 AAAGAAAATGATGAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAA
86865738 A
1 A
86865739 TGGGTGTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
21 10 0.53
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (20 bp):
AAAGAAAATGAGAAAAAAAA
Found at i:86867115 original size:29 final size:29
Alignment explanation
Indices: 86867044--86867175 Score: 183
Period size: 30 Copynumber: 4.5 Consensus size: 29
86867034 GACAAGATTG
* * * * *
86867044 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* *
86867074 GCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
86867103 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
86867133 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
86867162 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86867176 GATTCACTAT
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
29 45 0.49
30 47 0.51
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:86867136 original size:59 final size:59
Alignment explanation
Indices: 86867044--86867175 Score: 201
Period size: 59 Copynumber: 2.2 Consensus size: 59
86867034 GACAAGATTG
* * * *
86867044 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * *
86867103 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
86867162 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86867176 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 66 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:86878334 original size:39 final size:39
Alignment explanation
Indices: 86878250--86878402 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
86878240 TATGGTAACC
** * *
86878250 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
86878290 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
86878329 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
86878368 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
86878403 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:86878376 original size:78 final size:79
Alignment explanation
Indices: 86878219--86878401 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
86878209 TCGTTCAAAC
* * **
86878219 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
86878284 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
86878299 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
86878363 CAATTTGCACAATT
66 CAATTTGCACAATT
86878377 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86878402 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:86882845 original size:123 final size:122
Alignment explanation
Indices: 86882626--86882964 Score: 563
Period size: 123 Copynumber: 2.8 Consensus size: 122
86882616 GAATTATGTG
*
86882626 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTAACCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGT-ACCGG
*
86882691 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
65 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
86882749 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACTCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTAC-CGG
86882814 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
65 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
86882872 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTA-CCGG
*
86882937 GCTAAGTCCCGAAGAC-ATGTATGCTAGT
65 GCTAAGTCCCGAAGGCAAT-TATGCTAGT
86882965 AATTATATCC
Statistics
Matches: 205, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
122 4 0.02
123 200 0.98
124 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (122 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCGGG
CTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:86882988 original size:40 final size:39
Alignment explanation
Indices: 86882933--86883136 Score: 165
Period size: 40 Copynumber: 5.1 Consensus size: 39
86882923 TGAATGATAC
* * * *
86882933 CCGGGCTAAGTCCCGAAGACATGTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAT-TGTGCAAGTAATTATAT
* * * ** *
86882973 CCGGGTTAAGACCCGAAGGCTATTGTGCTAGTGACCACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAATTATAT
** *
86883013 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATTATAT
* * * ** *
86883053 CCGGGTTAATACCCAAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATTATAT
* **
86883093 CCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATTATAT
86883133 CCGG
1 CCGG
86883137 TTGTATTCCG
Statistics
Matches: 133, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 5 0.04
40 124 0.93
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCAAGTAATTATAT
Found at i:86883072 original size:80 final size:80
Alignment explanation
Indices: 86882971--86883136 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
86882961 TAGTAATTAT
* *
86882971 ATCCGGGTTAAGACCCGAAGGC-TATTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGTTAAGACCCAAAGGCAT-TTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
86883034 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
86883051 ATCCGGGTTAATACCCAAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGTTAAGACCCAAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
86883116 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
86883131 ATCCGG
1 ATCCGG
86883137 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 72 0.96
81 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGACCCAAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:86887886 original size:122 final size:123
Alignment explanation
Indices: 86887642--86887979 Score: 588
Period size: 122 Copynumber: 2.8 Consensus size: 123
86887632 GAATTATGTG
*
86887642 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
86887707 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
86887765 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTA-CCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
86887829 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
86887887 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
86887952 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
86887980 AATTATATCG
Statistics
Matches: 205, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
122 116 0.57
123 89 0.43
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:86888053 original size:40 final size:39
Alignment explanation
Indices: 86887948--86888190 Score: 283
Period size: 40 Copynumber: 6.1 Consensus size: 39
86887938 TGAATGATAC
* * * *
86887948 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGT-GTTATAT
* * * * *
86887988 -CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTG-TTATAT
86888027 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAG-TGTTATAT
86888067 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAG-TGTTATAT
86888107 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTATAT
* * * **
86888147 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTATAT
86888187 CCGG
1 CCGG
86888191 TTGTATTCCG
Statistics
Matches: 180, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
39 31 0.17
40 147 0.82
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTATAT
Found at i:86890962 original size:40 final size:40
Alignment explanation
Indices: 86890897--86891140 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
86890887 CGGAATACAA
* ** * * *
86890897 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
86890937 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
86890977 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
86891017 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
86891057 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
86891097 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
86891137 CCGG
1 CCGG
86891141 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:86891327 original size:122 final size:123
Alignment explanation
Indices: 86891109--86891446 Score: 588
Period size: 122 Copynumber: 2.8 Consensus size: 123
86891099 GGATATAATT
* * * * * * *
86891109 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86891174 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86891232 ACTAGCATAATTGCCTTCGGGACTTAGCCC-GGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86891296 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86891354 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86891419 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86891447 CACATAATTC
Statistics
Matches: 205, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
122 116 0.57
123 89 0.43
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86894334 original size:39 final size:39
Alignment explanation
Indices: 86894250--86894402 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
86894240 TATGGTAACC
** * *
86894250 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
86894290 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
86894329 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
86894368 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
86894403 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:86894376 original size:78 final size:79
Alignment explanation
Indices: 86894219--86894401 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
86894209 TCGTTCAAAC
* * **
86894219 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
86894284 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
86894299 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
86894363 CAATTTGCACAATT
66 CAATTTGCACAATT
86894377 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86894402 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:86903520 original size:40 final size:40
Alignment explanation
Indices: 86903461--86903668 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
86903451 CAATTGAATG
* * * *
86903461 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
86903501 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
86903541 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
86903581 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
86903621 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
86903661 ATATCCGG
1 ATATCCGG
86903669 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:86903599 original size:80 final size:80
Alignment explanation
Indices: 86903463--86903668 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
86903453 ATTGAATGAT
* * ** * * *
86903463 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
86903527 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
86903543 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
86903608 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
86903623 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
86903669 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:86908055 original size:21 final size:20
Alignment explanation
Indices: 86908030--86908069 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86908020 ACACTTATAT
*
86908030 ATATACATTAAAGATATATGC
1 ATATACAATAAA-ATATATGC
*
86908051 ATATATAATAAAATATATG
1 ATATACAATAAAATATATG
86908070 AATAATACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (20 bp):
ATATACAATAAAATATATGC
Found at i:86908559 original size:12 final size:12
Alignment explanation
Indices: 86908530--86908614 Score: 63
Period size: 12 Copynumber: 7.1 Consensus size: 12
86908520 ATATACACGC
*
86908530 ATATAATAAGAGT
1 ATATAATAATA-T
*
86908543 ATATACTAATAT
1 ATATAATAATAT
86908555 ATATAAT-A-AT
1 ATATAATAATAT
86908565 A-ATAATAATA-
1 ATATAATAATAT
86908575 ATAATAATAATA-
1 AT-ATAATAATAT
*
86908587 ATAATAATAGTAT
1 AT-ATAATAATAT
86908600 AATATTAATAATAT
1 -ATA-TAATAATAT
86908614 A
1 A
86908615 AAAATAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
9 5 0.08
10 5 0.08
11 2 0.03
12 27 0.45
13 11 0.18
14 10 0.17
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (12 bp):
ATATAATAATAT
Found at i:86908565 original size:3 final size:3
Alignment explanation
Indices: 86908557--86908621 Score: 89
Period size: 3 Copynumber: 22.3 Consensus size: 3
86908547 ACTAATATAT
*
86908557 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
86908604 TTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA A
86908622 AAAGAATATT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
2 3 0.06
3 51 0.94
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:86908603 original size:8 final size:7
Alignment explanation
Indices: 86908543--86908615 Score: 63
Period size: 6 Copynumber: 11.1 Consensus size: 7
86908533 TAATAAGAGT
86908543 ATATACTA
1 ATATA-TA
86908551 ATATAT-
1 ATATATA
86908557 ATA-ATA
1 ATATATA
86908563 ATA-ATA
1 ATATATA
86908569 ATA-ATA
1 ATATATA
86908575 ATA-ATA
1 ATATATA
86908581 ATA-ATA
1 ATATATA
86908587 ATA-ATA
1 ATATATA
86908593 ATAGTATA
1 ATA-TATA
86908601 ATAT-TA
1 ATATATA
86908607 ATAATATA
1 AT-ATATA
86908615 A
1 A
86908616 AAATAAAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.03
6 40 0.67
7 4 0.07
8 14 0.23
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (7 bp):
ATATATA
Found at i:86910502 original size:53 final size:54
Alignment explanation
Indices: 86910422--86910531 Score: 177
Period size: 53 Copynumber: 2.1 Consensus size: 54
86910412 CGCGTGAGCC
* *
86910422 AAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAATAGAAATTAA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTAA
* *
86910475 AAAGCTCAACTCACCTCTCGCAGTATGAGTCGATTTTTGAAAAACATAAATTAA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTAA
86910529 AAA
1 AAA
86910532 CAGAAATTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 37 0.71
54 15 0.29
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (54 bp):
AAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTAA
Found at i:86910759 original size:79 final size:79
Alignment explanation
Indices: 86910628--86910777 Score: 282
Period size: 79 Copynumber: 1.9 Consensus size: 79
86910618 TTGGAAGAAC
*
86910628 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86910693 TGAAAAGCAGAAAT
66 TGAAAAGCAGAAAT
*
86910707 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86910772 TGAAAA
66 TGAAAA
86910778 CATGAATTAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (79 bp):
AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAAAGCAGAAAT
Found at i:86910793 original size:178 final size:177
Alignment explanation
Indices: 86910478--86911120 Score: 765
Period size: 178 Copynumber: 3.7 Consensus size: 177
86910468 AAATTAAAAA
* * * *
86910478 GCTCAACTCACCTCTCGCAGTATGAGTCGATTTTTGAAAAACATAAATTAAAAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAA-T------AGAAATTGAA
* * * *
86910543 GATGT--CTTAGCGTGTCCTGAAGCTCAACT---C-CTCGTAATATGAGTTGATTTTTGAAAACA
59 -AT-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
*
86910602 TGAATTAAAACAGAAATTGGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
122 TGAATTAAAACAGAAATTGAAAGAACAGAAATT-AAAATACCTCAGCGTGTCCTGAG
86910659 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATAGAAATTGAAATTACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATAGAAATTGAAATTACCT
86910724 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAA
66 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAA
* *
86910789 ACAGAAATTGAAAGAATAGAAATTCAAAATACCTCAGCATGTCCTGAG
131 ACAGAAATTGAAAGAACAGAAATT-AAAATACCTCAGCGTGTCCTGAG
*
86910837 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATAGAAATTGAAATTACCT
* *
86910902 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-------T---TTGAA
66 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAA
* * *
86910957 ACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACC-GAG
131 ACAGAAATTGAAAGAACAGAAATTA-AAATACCTCAG--CGTG-TCCTGAG
* * *
86911007 GTTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTG-AAA--A-ACA-A-AAATTGAAATTAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATAGAAATTGAAATTAC
* * *
86911066 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTGGAAA
64 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
86911121 CAAACAAAAA
Statistics
Matches: 419, Mismatches: 27, Indels: 43
0.86 0.06 0.09
Matches are distributed among these distances:
166 60 0.14
167 2 0.00
168 39 0.09
169 1 0.00
170 33 0.08
171 6 0.01
172 7 0.02
173 2 0.00
174 31 0.07
177 1 0.00
178 193 0.46
180 1 0.00
181 43 0.10
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (177 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATAGAAATTGAAATTACCT
CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAA
ACAGAAATTGAAAGAACAGAAATTAAAATACCTCAGCGTGTCCTGAG
Found at i:86910937 original size:79 final size:78
Alignment explanation
Indices: 86910806--86911198 Score: 336
Period size: 75 Copynumber: 4.9 Consensus size: 78
86910796 TTGAAAGAAT
* *
86910806 AGAAATTCAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86910871 TGAAAAGCAGAAAC
65 TGAAAAGCAGAAAC
*
86910885 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---T
**
86910950 TTTTGAAACATAAATTGAAAGAAC
62 TTTTGAAA-A-GCA--G--A-AAC
* * * *
86910974 AGAAATT-AGAAATACCTCAGTATGTGAACCGAGGTTCAACTCATCTCTCGCAATATGAGTTGAT
1 AGAAATTGA-AAATACCTCAG--CGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** *
86911038 TTTT---TTG-AAAAAC
62 TTTTGAAAAGCAGAAAC
* * * *
86911051 AAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-GTTT
1 AGAAATTGAAAATACCTCAGCGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
86911115 TGGAAA-C--AAAC
65 TGAAAAGCAGAAAC
* ** * * *
86911126 AAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCG--TG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
86911191 TTTGAAAA
63 TTTGAAAA
86911199 CATGAATTAA
Statistics
Matches: 259, Mismatches: 33, Indels: 45
0.77 0.10 0.13
Matches are distributed among these distances:
74 4 0.02
75 58 0.22
77 53 0.20
78 10 0.04
79 58 0.22
82 10 0.04
83 1 0.00
84 1 0.00
86 1 0.00
88 7 0.03
89 20 0.08
91 34 0.13
92 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (78 bp):
AGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAAGCAGAAAC
Found at i:86911185 original size:77 final size:74
Alignment explanation
Indices: 86910964--86911198 Score: 249
Period size: 77 Copynumber: 3.1 Consensus size: 74
86910954 GAAACATAAA
* * * * * *
86910964 TTGAAAGAACAGAAATT-AGAAATACCTCAGTATGTGAACCGAGGTTCAACTCATCTCTCGCAAT
1 TTGAAAAAACAAAAATTGA-AAATACCTCAG--CGTGACCCAAGGTTCAACTCACCTCTCGCAAT
86911028 ATGAGTTGATTTTT
63 ATGAGTTGA--TTT
* * * *
86911042 TTG-AAAAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAAACAAAAATTGAAAATACCTCAGCGTGACCCAAGGTTCAACTCACCTCTCGCAATATG
*
86911106 AGTTGGTTT
66 AGTTGATTT
* ** *
86911115 TGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCAAT
1 TTGAAA-AAACAAAAATTGAAAATACCTCAGCG--TGACCCAAGGTTCAACTCACCTCTCGCAAT
86911180 ATGAGTTGATTT
63 ATGAGTTGATTT
86911192 TTGAAAA
1 TTGAAAA
86911199 CATGAATTAA
Statistics
Matches: 133, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
73 5 0.04
74 2 0.02
75 58 0.44
76 1 0.01
77 63 0.47
78 4 0.03
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (74 bp):
TTGAAAAAACAAAAATTGAAAATACCTCAGCGTGACCCAAGGTTCAACTCACCTCTCGCAATATG
AGTTGATTT
Found at i:86911213 original size:421 final size:420
Alignment explanation
Indices: 86910625--86911631 Score: 1770
Period size: 420 Copynumber: 2.4 Consensus size: 420
86910615 AAATTGGAAG
* * * *
86910625 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-G
* * ** ** * *
86910690 TTTTGAAAAGCAGAA-ATAGAAATTGAAATTACCTCAGCG--TGTCCCGAGGCTCAACTCACCTC
65 TTTTGGAAA-CA-AACA-A-AAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTC
86910752 TCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAATAGAAATTCAAA
126 TCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAATAGAAATTCAAA
*
86910817 ATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGA
191 ATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGA
86910882 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
256 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
86910947 TTTTTTTGAAACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCA
320 TTTTTTTGAAACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCA
86911012 ACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAA
385 ACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAA
*
86911048 AACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
1 AACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
86911113 TTTGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCA
66 TTTGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCA
86911178 ATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAATAGAAATTCAAAATACC
131 ATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAATAGAAATTCAAAATACC
86911243 TCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAACAG
196 TCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAACAG
86911308 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
261 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
86911373 TGAAACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCAACTCAT
326 TGAAACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCAACTCAT
86911438 CTCTCGCAATATGAGTTGATTTTTTTGAAA
391 CTCTCGCAATATGAGTTGATTTTTTTGAAA
*
86911468 AACAGAAATTGAAATCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
1 AACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
86911533 TTTGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCA
66 TTTGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCA
*
86911598 ATATGAGTTGATATTTGAAAAACA-GAAATTAAAA
131 ATATGAGTTGATTTTTG-AAAACATG-AATTAAAA
86911632 GGCTCAACTC
Statistics
Matches: 562, Mismatches: 17, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
419 17 0.03
420 249 0.44
421 229 0.41
422 8 0.01
423 59 0.10
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (420 bp):
AACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
TTTGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAATAGAAATTCAAAATACC
TCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAACAG
AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAACATAAATTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCAACTCAT
CTCTCGCAATATGAGTTGATTTTTTTGAAA
Found at i:86911358 original size:79 final size:77
Alignment explanation
Indices: 86911227--86911625 Score: 346
Period size: 79 Copynumber: 5.0 Consensus size: 77
86911217 TTGAAAGAAT
* *
86911227 AGAAATTCAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86911292 TGAAAACCAGAAAC
65 TGAAAA-CAGAAAC
*
86911306 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
86911371 TTTGAAACATAAATTGAAAGAAC
63 TTTG-AA-A-ACA--G--A-AAC
* * * *
86911394 AGAAATT-AGAAATACCTCAGTATGTGAACCGAGGTTCAACTCATCTCTCGCAATATGAGTTGAT
1 AGAAATTGA-AAATACCTCAG--CGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
86911458 TTTT-TTGA-A-AAAC
62 TTTTGAAAACAGAAAC
* *
86911471 AGAAATTG-AAATCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-GTT
1 AGAAATTGAAAAT-ACCTCAGCGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
86911534 TTGGAAAC--AAAC
64 TTGAAAACAGAAAC
* ** * * * *
86911546 AAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCAATATGAGTTGATA
1 AGAAATTGAAAATACCTCAGCG--TG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
86911611 TTTGAAAAACAGAAA
63 TTTG-AAAACAGAAA
86911626 TTAAAAGGCT
Statistics
Matches: 264, Mismatches: 31, Indels: 48
0.77 0.09 0.14
Matches are distributed among these distances:
74 4 0.02
75 54 0.20
76 8 0.03
77 51 0.19
78 5 0.02
79 62 0.23
81 9 0.03
82 2 0.01
83 3 0.01
84 2 0.01
85 1 0.00
87 2 0.01
88 25 0.09
90 34 0.13
91 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (77 bp):
AGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAACAGAAAC
Found at i:86911505 original size:165 final size:166
Alignment explanation
Indices: 86911208--86911535 Score: 468
Period size: 165 Copynumber: 2.0 Consensus size: 166
86911198 ACATGAATTA
*
86911208 AAACAGAAATTGAAAGAATAGAAATTCAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
1 AAACAGAAATTGAAAGAACAGAAATTCAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
* * *
86911273 CGCAATATGAGTTGATTTTTGAAAACCAGAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
66 CGCAATATGAGTTGATTTTTGAAAA-CAGAAACAGAAATTGAAATCACCTCAGCGTGCCCCGAGG
86911338 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * *
86911375 AAACATAAATTGAAAGAACAGAAATT-AGAAATACCTCAGTATGTGAACC-GAGGTTCAACTCAT
1 AAACAGAAATTGAAAGAACAGAAATTCA-AAATACCTCAGCATGT---CCTGAGGCTCAACTCAC
***
86911438 CTCTCGCAATATGAGTTGATTTTT-TTGA-A-AAACAGAAATTGAAATCACCTCAGCGTGCCCCG
62 CTCTCGCAATATGAGTTGATTTTTGAAAACAGAAACAGAAATTGAAATCACCTCAGCGTGCCCCG
*
86911500 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTT
127 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86911536 GGAAACAAAC
Statistics
Matches: 145, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
165 65 0.45
166 2 0.01
167 39 0.27
168 1 0.01
169 36 0.25
170 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (166 bp):
AAACAGAAATTGAAAGAACAGAAATTCAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGAAAACAGAAACAGAAATTGAAATCACCTCAGCGTGCCCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:86911517 original size:75 final size:72
Alignment explanation
Indices: 86911384--86911627 Score: 263
Period size: 75 Copynumber: 3.2 Consensus size: 72
86911374 GAAACATAAA
* *
86911384 TTGAAAGAACAGAAATTAGAAATACCTCAGTATGTGAACCGAGGTTCAACTCATCTCTCGCAATA
1 TTGAAA-AACAGAAATT-GAAATACCTCAG--CGTGAACCGAGGTTCAACTCACCTCTCGCAATA
86911449 TGAGTTGATTTTT
62 TGAGTTGA--TTT
** *
86911462 TTGAAAAACAGAAATTGAAATCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAT-ACCTCAGCGTGAACCGAGGTTCAACTCACCTCTCGCAATATGA
*
86911527 GTTGGTTT
65 GTTGATTT
* * ** * *
86911535 TGGAAACAAACAAAAATTGAAAATGGCTCAGCGCATGAGCCAAGGTTCAACTCACCTCTCGCAAT
1 TTG-AA-AAACAGAAATTG-AAATACCTCAGCG--TGAACCGAGGTTCAACTCACCTCTCGCAAT
*
86911600 ATGAGTTGATAT
61 ATGAGTTGATTT
86911612 TTGAAAAACAGAAATT
1 TTGAAAAACAGAAATT
86911628 AAAAGGCTCA
Statistics
Matches: 142, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
73 5 0.04
74 2 0.01
75 63 0.44
76 11 0.08
77 55 0.39
78 6 0.04
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (72 bp):
TTGAAAAACAGAAATTGAAATACCTCAGCGTGAACCGAGGTTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:86911727 original size:54 final size:53
Alignment explanation
Indices: 86911576--86911726 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 53
86911566 CGCATGAGCC
*
86911576 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTGAAAAACAGAAATTAA
*
86911630 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATTAA
* *
86911684 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA
86911727 AAAACAAAAT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
53 9 0.10
54 81 0.89
55 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (53 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTAA
Found at i:86912009 original size:87 final size:81
Alignment explanation
Indices: 86911929--86912080 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 81
86911919 AAATAGAAAC
* *
86911929 TGAAA-ACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCCCAACTCACCTCTCACAATATG
1 TGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
* **
86911993 AGTTGCTTTTGGAAAA
66 AGTTGATTTTAAAAAA
* * *
86912009 TTAAAGATAGAAATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
86912072 AGTTGATTT
66 AGTTGATTT
86912081 CTGAGAACAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 36 0.55
80 4 0.06
81 25 0.38
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (81 bp):
TGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTAAAAAA
Found at i:86925177 original size:3 final size:3
Alignment explanation
Indices: 86925163--86925240 Score: 131
Period size: 3 Copynumber: 26.0 Consensus size: 3
86925153 GAGTATATAC
86925163 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
86925209 TAA TAA TAA TAA TAA TAA TAA T-A TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86925241 AAAGAATATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 66 0.93
4 3 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:86925769 original size:32 final size:32
Alignment explanation
Indices: 86925727--86925788 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
86925717 AGAAAAGGGA
* *
86925727 TCCGGGCAGGGGAAGGGTCACCGGTTCGGCAT
1 TCCGGCCAGGGGAAGGGTCACCGGTCCGGCAT
*
86925759 TCCGGCCAGGGGAGGGGTCACCGGTCCGGC
1 TCCGGCCAGGGGAAGGGTCACCGGTCCGGC
86925789 CGGAGGAGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.13, C:0.29, G:0.45, T:0.13
Consensus pattern (32 bp):
TCCGGCCAGGGGAAGGGTCACCGGTCCGGCAT
Found at i:86929304 original size:53 final size:53
Alignment explanation
Indices: 86929202--86929408 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
86929192 TTCCATTTTA
* * * ** *
86929202 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCTAGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * * *
86929255 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
86929308 ATAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 A-A-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * *
86929364 AACTTACCAATGCCATGCCTTGGGATGGTCTTACTTGTTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
86929409 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 43 0.36
54 36 0.30
55 39 0.33
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:86934409 original size:21 final size:21
Alignment explanation
Indices: 86934385--86934428 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
86934375 TTTTCTTGTC
86934385 GCCTCTGCTGCCCTT-GCTGCT
1 GCCTCTGCT-CCCTTCGCTGCT
*
86934406 GCCTCTGCTTCCTTCGCTGCT
1 GCCTCTGCTCCCTTCGCTGCT
86934427 GC
1 GC
86934429 ATTTGCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.00, C:0.43, G:0.23, T:0.34
Consensus pattern (21 bp):
GCCTCTGCTCCCTTCGCTGCT
Found at i:86934435 original size:21 final size:20
Alignment explanation
Indices: 86934396--86934436 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
86934386 CCTCTGCTGC
*
86934396 CCTTGCTGCTGCCTCTGCTT
1 CCTTGCTGCTGCATCTGCTT
*
86934416 CCTTCGCTGCTGCATTTGCTT
1 CCTT-GCTGCTGCATCTGCTT
86934437 TAAGTTGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.02, C:0.37, G:0.20, T:0.41
Consensus pattern (20 bp):
CCTTGCTGCTGCATCTGCTT
Found at i:86935764 original size:41 final size:40
Alignment explanation
Indices: 86935719--86936182 Score: 466
Period size: 41 Copynumber: 11.4 Consensus size: 40
86935709 CAATAGTGCA
* * **
86935719 TTTTTGGCCAAAACGCCACTAAAAACCGACCAATAGCAACG
1 TTTTTGGCC-AAACGCCACTAAAAACTGATCAATAGCGGCG
* * *
86935760 TTTTTAGCCAAAACGCCACTAAAAACCGATCAATAGCGGTG
1 TTTTTGGCC-AAACGCCACTAAAAACTGATCAATAGCGGCG
86935801 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
1 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
* * *
86935841 TTTATAT-CCCAAACACCACTAAAAACTGATCAATAGCGGTG
1 TTT-T-TGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
* * *
86935882 TTTTTGTCCAAACACCACTAAAAACTAATCAATAGCGGCG
1 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
* * * * * * *
86935922 TTTTTTGCCCAAGCGCCACTAAAAATTGATTAATAACAGTG
1 -TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
** * * *
86935963 TTTTTGTTTCAAAGGCCACTAAAAACTTG-TGAATAGCAGCG
1 TTTTTG-GCCAAACGCCACTAAAAAC-TGATCAATAGCGGCG
* * *
86936004 TTTTTGGTCAAACACCGCTAAAAACTGATCAATAGCGGCG
1 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
** * * *
86936044 TTTTTATCCCAAACGCCACTAAAAACTAATCAGTAGCGGCA
1 TTTTT-GGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
* * * *
86936085 TTTTTGTTCCAAACGCCACTAAAAACTTATGAATAGCGGTG
1 TTTTTG-GCCAAACGCCACTAAAAACTGATCAATAGCGGCG
*
86936126 TTTTTGGTCCAAACGCCACTAAAAA-TGATTAATAGCGGCG
1 TTTTTGG-CCAAACGCCACTAAAAACTGATCAATAGCGGCG
86936166 TTTTTGGTCCAAACGCC
1 TTTTTGG-CCAAACGCC
86936183 GCAAAAAGTT
Statistics
Matches: 357, Mismatches: 56, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.01
40 129 0.36
41 222 0.62
42 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (40 bp):
TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCG
Found at i:86935784 original size:81 final size:81
Alignment explanation
Indices: 86935719--86936182 Score: 495
Period size: 81 Copynumber: 5.7 Consensus size: 81
86935709 CAATAGTGCA
* * ** *
86935719 TTTTTGGCCAAAACGCCACTAAAAACCGACCAATAGCAACGTTTTTAGCCAAAACGCCACTAAAA
1 TTTTTGGCC-AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAA
*
86935784 ACCGATCAATAGCGGTG
65 ACTGATCAATAGCGGTG
* * *
86935801 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTATATCCCAAACACCACTAAAAA
1 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAA
86935866 CTGATCAATAGCGGTG
66 CTGATCAATAGCGGTG
* * * * *
86935882 TTTTTGTCCAAACACCACTAAAAACTAATCAATAGCGGCGTTTTTTGCCCAAGCGCCACTAAAAA
1 TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAA
* * * *
86935947 TTGATTAATAACAGTG
66 CTGATCAATAGCGGTG
** * * * ** * *
86935963 TTTTTGTTTCAAAGGCCACTAAAAACTTG-TGAATAGCAGCGTTTTT-GGTCAAACACCGCTAAA
1 TTTTTG-GCCAAACGCCACTAAAAAC-TGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAA
*
86936026 AACTGATCAATAGCGGCG
64 AACTGATCAATAGCGGTG
** * * * *
86936044 TTTTTATCCCAAACGCCACTAAAAACTAATCAGTAGCGGCATTTTT-GTTCCAAACGCCACTAAA
1 TTTTT-GGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAG-CCCAAACGCCACTAAA
* *
86936108 AACTTATGAATAGCGGTG
64 AACTGATCAATAGCGGTG
* * *
86936126 TTTTTGGTCCAAACGCCACTAAAAA-TGATTAATAGCGGCGTTTTTGGTCCAAACGCC
1 TTTTTGG-CCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCC
86936183 GCAAAAAGTT
Statistics
Matches: 316, Mismatches: 59, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.00
81 224 0.71
82 90 0.28
83 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (81 bp):
TTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAA
CTGATCAATAGCGGTG
Found at i:86935885 original size:122 final size:122
Alignment explanation
Indices: 86935729--86936182 Score: 504
Period size: 122 Copynumber: 3.7 Consensus size: 122
86935719 TTTTTGGCCA
* * * * * *
86935729 AAACGCCACTAAAAACCGACCAATAGCAACGTTTTTAG-CCAAAACGCCACTAAAAACCGATCAA
1 AAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTGGTCC-AAACACCACTAAAAACTGATCAA
* * * * *
86935793 TAGCGGTGTTTTTGGCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTATATCCC
65 TAGCGGCGTTTTTGCCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGTTCC
* * * *
86935851 AAACACCACTAAAAACTGATCAATAGCGGTGTTTTT-GTCCAAACACCACTAAAAACTAATCAAT
1 AAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTGGTCCAAACACCACTAAAAACTGATCAAT
* * * * * * *
86935915 AGCGGCGTTTTTTGCCCAAGCGCCACTAAAAATTGATTAATAACAGTGTTTTTGTTTC
66 AGCGGCG-TTTTTGCCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGTTCC
* * *
86935973 AAAGGCCACTAAAAACTTG-TGAATAGCAGCGTTTTTGGT-CAAACACCGCTAAAAACTGATCAA
1 AAACGCCACTAAAAAC-TGATCAATAGCAGCGTTTTTGGTCCAAACACCACTAAAAACTGATCAA
* * * *
86936036 TAGCGGCGTTTTTATCCCAAACGCCACTAAAAACTAATCAGTAGCGGCATTTTTGTTCC
65 TAGCGGCGTTTTT-GCCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGTTCC
* * * * * *
86936095 AAACGCCACTAAAAACTTATGAATAGCGGTGTTTTTGGTCCAAACGCCACTAAAAA-TGATTAAT
1 AAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTGGTCCAAACACCACTAAAAACTGATCAAT
*
86936159 AGCGGCGTTTTTGGTCCAAACGCC
66 AGCGGCGTTTTT-GCCCAAACGCC
86936183 GCAAAAAGTT
Statistics
Matches: 276, Mismatches: 49, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
121 34 0.12
122 224 0.81
123 18 0.07
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (122 bp):
AAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTGGTCCAAACACCACTAAAAACTGATCAAT
AGCGGCGTTTTTGCCCAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGTTCC
Found at i:86936762 original size:38 final size:41
Alignment explanation
Indices: 86936714--86936795 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 41
86936704 TTTTAAGGCC
*
86936714 TATGGTTTA-G-GGTTCAATGG-TAGAATATATTTTAAGTT
1 TATGGTTTAGGCGGTTCAATGGATAGAATATATGTTAAGTT
*
86936752 TATGGTTTAGGCCGGTTCAATGGTATAGTATATATGTTAAGTT
1 TATGGTTTAGG-CGGTTCAATGG-ATAGAATATATGTTAAGTT
86936795 T
1 T
86936796 TTGGGGTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
38 9 0.24
39 1 0.03
41 10 0.27
43 17 0.46
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.44
Consensus pattern (41 bp):
TATGGTTTAGGCGGTTCAATGGATAGAATATATGTTAAGTT
Found at i:86938116 original size:17 final size:17
Alignment explanation
Indices: 86938096--86938144 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
86938086 AATTTCCTTC
86938096 TCCCCTAAATCAAAATT
1 TCCCCTAAATCAAAATT
* *
86938113 TCCCCTAAACCCTAAATT
1 TCCCCTAAA-TCAAAATT
*
86938131 TCCCCCAAATCAAA
1 TCCCCTAAATCAAA
86938145 CCCATTTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (17 bp):
TCCCCTAAATCAAAATT
Found at i:86939683 original size:18 final size:18
Alignment explanation
Indices: 86939660--86939700 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
86939650 ATTACCTGTT
86939660 GCATCTGTAATGGCTTTC
1 GCATCTGTAATGGCTTTC
86939678 GCATCTGTAATGGCTTTC
1 GCATCTGTAATGGCTTTC
86939696 GCATC
1 GCATC
86939701 AGTTTCCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (18 bp):
GCATCTGTAATGGCTTTC
Found at i:86949080 original size:26 final size:26
Alignment explanation
Indices: 86949044--86949151 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86949034 TGAAATGCTC
*
86949044 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
86949070 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
86949096 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
86949122 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86949148 ATCA
1 ATCA
86949152 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86950528 original size:16 final size:16
Alignment explanation
Indices: 86950499--86950564 Score: 79
Period size: 12 Copynumber: 4.4 Consensus size: 16
86950489 TTTATCCTTA
*
86950499 GATTATTTTT-CATGT
1 GATTTTTTTTCCATGT
86950514 GATTTTTTTTCCATGT
1 GATTTTTTTTCCATGT
86950530 GA----TTTTCCATGT
1 GATTTTTTTTCCATGT
86950542 GATTTTTTTTCCCATGT
1 GATTTTTTTT-CCATGT
86950559 GATTTT
1 GATTTT
86950565 CCATAATCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
12 12 0.27
15 9 0.20
16 11 0.25
17 12 0.27
ACGTcount: A:0.15, C:0.12, G:0.14, T:0.59
Consensus pattern (16 bp):
GATTTTTTTTCCATGT
Found at i:86950543 original size:28 final size:29
Alignment explanation
Indices: 86950503--86950568 Score: 116
Period size: 28 Copynumber: 2.3 Consensus size: 29
86950493 TCCTTAGATT
*
86950503 ATTTTTCATGTGATTTTTTTT-CCATGTG
1 ATTTTCCATGTGATTTTTTTTCCCATGTG
86950531 ATTTTCCATGTGATTTTTTTTCCCATGTG
1 ATTTTCCATGTGATTTTTTTTCCCATGTG
86950560 ATTTTCCAT
1 ATTTTCCAT
86950569 AATCTCAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 20 0.56
29 16 0.44
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (29 bp):
ATTTTCCATGTGATTTTTTTTCCCATGTG
Found at i:86950800 original size:9 final size:9
Alignment explanation
Indices: 86950784--86950837 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
86950774 TTATCATATC
86950784 TTACATAAT
1 TTACATAAT
86950793 TTACATAAT
1 TTACATAAT
*** *
86950802 TCGGATAAC
1 TTACATAAT
86950811 TTACATAAT
1 TTACATAAT
*
86950820 TTACATAAC
1 TTACATAAT
86950829 TTACATAAT
1 TTACATAAT
86950838 ACATAAATAT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.39
Consensus pattern (9 bp):
TTACATAAT
Found at i:86950827 original size:18 final size:18
Alignment explanation
Indices: 86950784--86950837 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
86950774 TTATCATATC
*
86950784 TTACATAATTTACATAAT
1 TTACATAACTTACATAAT
***
86950802 TCGGATAACTTACATAAT
1 TTACATAACTTACATAAT
86950820 TTACATAACTTACATAAT
1 TTACATAACTTACATAAT
86950838 ACATAAATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.39
Consensus pattern (18 bp):
TTACATAACTTACATAAT
Found at i:86950836 original size:27 final size:27
Alignment explanation
Indices: 86950778--86950870 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
86950768 AGATATTTAT
*
86950778 CATATCTTACATAATTTACATAA-TT-
1 CATAACTTACATAATTTACATAACTTA
86950803 CGGATAACTTACATAATTTACATAACTTA
1 C--ATAACTTACATAATTTACATAACTTA
* * * *
86950832 CATAA--TACATAA-ATATATATCATA
1 CATAACTTACATAATTTACATAACTTA
86950856 TCATAACTTACATAA
1 -CATAACTTACATAA
86950871 CTTAATTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
24 8 0.14
25 13 0.23
27 32 0.57
28 2 0.04
29 1 0.02
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.37
Consensus pattern (27 bp):
CATAACTTACATAATTTACATAACTTA
Found at i:86956445 original size:21 final size:21
Alignment explanation
Indices: 86956396--86956454 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
86956386 CAGCAGATAA
* *
86956396 GGAGGCAACGGCAGTAGCGAG
1 GGAGGCAGCGGCAGCAGCGAG
*
86956417 AGAGGCAGCGGCAGCAGCGAG
1 GGAGGCAGCGGCAGCAGCGAG
*
86956438 GGAGGCAGAGGCGAGCA
1 GGAGGCAGCGGC-AGCA
86956455 AAAAGTACGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GGAGGCAGCGGCAGCAGCGAG
Done.