Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 281 of 425
Found at i:86962631 original size:19 final size:19
Alignment explanation
Indices: 86962607--86962643 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
86962597 ATTGAAGGGA
86962607 GACTTGGTCAGAAATTGGC
1 GACTTGGTCAGAAATTGGC
*
86962626 GACTTGGTCAGCAATTGG
1 GACTTGGTCAGAAATTGG
86962644 AGTTTTGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (19 bp):
GACTTGGTCAGAAATTGGC
Found at i:86970080 original size:46 final size:45
Alignment explanation
Indices: 86969936--86970202 Score: 211
Period size: 46 Copynumber: 5.7 Consensus size: 45
86969926 TTTGTGTGCT
* *
86969936 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCC-TGA-GATGAGAGCC
* * *
86969982 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CTGAGATGAGAGCC
*
86970030 AGTGTAAGACATATTTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-GAGATG-AGAGCC
* * * *
86970076 AGTGTAAGACATGTTTGGGACATGCATC-GACT-ATATGATGTGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTGAGATGA-GAGCC
* * * * *
86970120 AGTATAAGACCATGTCTGGGACATGGCATCGACAC-GAATAAGTGAGAGTC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CTG-A-GA-TGAGAGCC
*
86970170 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC
86970203 ATTATACCCT
Statistics
Matches: 183, Mismatches: 22, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 10 0.05
45 17 0.09
46 57 0.31
47 27 0.15
48 26 0.14
49 2 0.01
50 36 0.20
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTGAGATGAGAGCC
Found at i:86970167 original size:140 final size:142
Alignment explanation
Indices: 86969936--86970202 Score: 332
Period size: 140 Copynumber: 1.9 Consensus size: 142
86969926 TTTGTGTGCT
* * *
86969936 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACATATTATGAGAGCCAGTATAAGACCATGTCTGG
* * * *
86970001 GACATGGCATCGGCATTGAGACGAGAG-CTAGTGTAAGA-CATATTTGGGACAT-GCATCGGCCT
66 GACATGGCATCGACAATAAGACGAGAGTC-AGTGTAAGACCATATCTGGGACATGGCATCGGCCT
86970063 CGAGATGTAAGCC
130 CGAGATGTAAGCC
* * *
86970076 AGTGTAAGACATGTTTGGGACATGCATC-GAC-TA-TATGATGTGTCAGTATAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACATATTATGA-GAGCCAGTATAAGACCATGTCTG
* *
86970138 GGACATGGCATCGACACGAATAAG-TGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
65 GGACATGGCATCG--AC-AATAAGACGAGAGTCAGTGTAAGACCATATCTGGGACATGGCATCGG
86970202 C
127 C
86970203 ATTATACCCT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
137 5 0.05
138 34 0.31
139 2 0.02
140 42 0.39
141 17 0.16
142 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACATATTATGAGAGCCAGTATAAGACCATGTCTGG
GACATGGCATCGACAATAAGACGAGAGTCAGTGTAAGACCATATCTGGGACATGGCATCGGCCTC
GAGATGTAAGCC
Found at i:86972438 original size:21 final size:20
Alignment explanation
Indices: 86972395--86972462 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 20
86972385 AGAGCTGGCC
*
86972395 AACAGAAGCTCGAA-AGCTG
1 AACAGAAGCTCTAAGAGCTG
*
86972414 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTC-TAAGAGCTG
* *
86972435 AACAAAAGCTTGTAAGAGCTG
1 AACAGAAGC-TCTAAGAGCTG
86972456 AACAGAA
1 AACAGAA
86972463 AGTAAAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 11 0.28
20 2 0.05
21 26 0.65
22 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.24, T:0.15
Consensus pattern (20 bp):
AACAGAAGCTCTAAGAGCTG
Found at i:86974430 original size:40 final size:39
Alignment explanation
Indices: 86974342--86974480 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 39
86974332 GGACTAGGAT
* *
86974342 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
86974381 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* * *
86974421 CCGAAGGCATTCGTGCGAGTCACTATAACTGGGCTT-CGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
86974461 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
86974481 CGTTATATCC
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.39
40 48 0.56
41 4 0.05
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:86974504 original size:79 final size:79
Alignment explanation
Indices: 86974341--86974506 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
86974331 CGGACTAGGA
* * *
86974341 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
86974406 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * ** * **
86974420 CCCGAAGGCATTCGTGCGAGTCACTATAA-CTGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
86974484 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
86974499 TCCGAAGG
1 TCCGAAGG
86974507 TACGTGATTC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 44 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:86983124 original size:12 final size:12
Alignment explanation
Indices: 86983103--86983132 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
86983093 CAATGGTAGG
*
86983103 GAAGATCATGAT
1 GAAGAACATGAT
86983115 GAAGAACATGAT
1 GAAGAACATGAT
86983127 GAAGAA
1 GAAGAA
86983133 GACAACAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.27, T:0.17
Consensus pattern (12 bp):
GAAGAACATGAT
Found at i:86986686 original size:28 final size:28
Alignment explanation
Indices: 86986609--86986692 Score: 78
Period size: 33 Copynumber: 2.8 Consensus size: 28
86986599 ACAATACGTG
* * *
86986609 CAGTAATAGTCTGGGCCTAAGCCCTATT
1 CAGTAACAGTGTGGGCCTAAGCCCTATA
* *
86986637 CAGTAACAGTACAGTTTAGGCCTTAGCCCTATA
1 CAGTAACAGT---G--TGGGCCTAAGCCCTATA
86986670 CAGTAACAGTGTGGGCCTAAGCC
1 CAGTAACAGTGTGGGCCTAAGCC
86986693 TAATACAACA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
28 19 0.43
30 1 0.02
33 24 0.55
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTAAGCCCTATA
Found at i:86988870 original size:40 final size:40
Alignment explanation
Indices: 86988787--86988893 Score: 128
Period size: 40 Copynumber: 2.6 Consensus size: 40
86988777 TCGAATGATG
*
86988787 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCTAAGTGACCAAA
* **
86988827 TCCGGACTAAGATCCGAAGGCATTTGTGC-AAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCTAAGTGACCAAA
*
86988867 TCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGCTAAGT-CCGAAGGCATTTGT
86988894 CCGAGCTATT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 48 0.83
41 9 0.16
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:86992252 original size:13 final size:13
Alignment explanation
Indices: 86992234--86992261 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86992224 ACATATTATA
86992234 AATATTTTGTGTT
1 AATATTTTGTGTT
86992247 AATATTTTGTGTT
1 AATATTTTGTGTT
86992260 AA
1 AA
86992262 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:86993727 original size:40 final size:40
Alignment explanation
Indices: 86993679--86993884 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
86993669 GGACTAAGAT
86993679 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
86993719 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
86993759 CCGGAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
86993799 CCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
86993839 CCAAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
86993878 TCGAAGG
1 CCGAAGG
86993885 TACTTGGGTT
Statistics
Matches: 150, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.09
40 135 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:86997103 original size:16 final size:16
Alignment explanation
Indices: 86997082--86997137 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
86997072 CTCGGCCCTA
86997082 TCACATATATACACCT
1 TCACATATATACACCT
*
86997098 TCACAT-TCAT-CGGCCTT
1 TCACATAT-ATAC-ACC-T
86997115 ATCACATATATACACCT
1 -TCACATATATACACCT
86997132 TCACAT
1 TCACAT
86997138 TCATCACATC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 2 0.06
18 10 0.31
19 2 0.06
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (16 bp):
TCACATATATACACCT
Found at i:86997112 original size:34 final size:34
Alignment explanation
Indices: 86997073--86997142 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
86997063 CGTTGGCCAC
86997073 TCGGCCCTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
*
86997107 TCGGCCTTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
86997141 TC
1 TC
86997143 ACATCTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.34, G:0.06, T:0.31
Consensus pattern (34 bp):
TCGGCCCTATCACATATATACACCTTCACATTCA
Found at i:86997132 original size:18 final size:18
Alignment explanation
Indices: 86997080--86997132 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
86997070 CACTCGGCCC
86997080 TATCACATATATACACC-
1 TATCACATATATACACCT
*
86997097 T-TCACAT-TCAT-CGGCCT
1 TATCACATAT-ATAC-ACCT
86997114 TATCACATATATACACCT
1 TATCACATATATACACCT
86997132 T
1 T
86997133 CACATTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 2 0.07
18 12 0.43
19 2 0.07
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (18 bp):
TATCACATATATACACCT
Found at i:86997162 original size:47 final size:47
Alignment explanation
Indices: 86997109--86997334 Score: 353
Period size: 49 Copynumber: 4.7 Consensus size: 47
86997099 CACATTCATC
*
86997109 GGCCTTATCACATATATACACCTTCACATTCATCACATCTGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
86997156 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTA
* * *
86997205 GGTCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTA
*
86997254 GGCCTTATCACATATATATACCTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
86997301 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
86997335 GCGTAAAATC
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
47 76 0.47
48 1 0.01
49 86 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
Found at i:86997220 original size:96 final size:94
Alignment explanation
Indices: 86997109--86997334 Score: 373
Period size: 96 Copynumber: 2.4 Consensus size: 94
86997099 CACATTCATC
86997109 GGCCTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATAT
1 GGCCTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCACATATAT
86997173 ATACACTTTCACATTCATCACATCGGCCATTA
65 ATAC-C-TTCACATTCATCACATCGGCCATTA
* *
86997205 GGTCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
86997270 TATACCTTCACATTCATCACATCGGCCATTA
64 TATACCTTCACATTCATCACATCGGCCATTA
*
86997301 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
86997335 GCGTAAAATC
Statistics
Matches: 123, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
94 12 0.10
96 65 0.53
97 3 0.02
98 43 0.35
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
TACCTTCACATTCATCACATCGGCCATTA
Found at i:87001268 original size:42 final size:43
Alignment explanation
Indices: 87001075--87001294 Score: 379
Period size: 43 Copynumber: 5.1 Consensus size: 43
87001065 CCTTGCTCGA
** * *
87001075 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
87001118 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
87001161 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
87001204 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
87001247 ATCA-CGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
87001289 ATCACC
1 ATCACC
87001295 AGCATGACTG
Statistics
Matches: 170, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
42 42 0.25
43 128 0.75
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:87001468 original size:42 final size:42
Alignment explanation
Indices: 87001277--87001488 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 42
87001267 AGGCACGAAG
* * * * * * *
87001277 GCCCGAATACATATCACCAGCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
87001319 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
87001359 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
87001399 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
87001439 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
87001481 GCCCGGAT
1 GCCCGGAT
87001489 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
40 103 0.72
41 2 0.01
42 39 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:87003490 original size:16 final size:16
Alignment explanation
Indices: 87003469--87003524 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
87003459 CTCGGCCCTA
87003469 TCACATATATACACCT
1 TCACATATATACACCT
*
87003485 TCACAT-TCAT-CGGCCTT
1 TCACATAT-ATAC-ACC-T
87003502 ATCACATATATACACCT
1 -TCACATATATACACCT
87003519 TCACAT
1 TCACAT
87003525 TCATCACATC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 2 0.06
18 10 0.31
19 2 0.06
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (16 bp):
TCACATATATACACCT
Found at i:87003499 original size:34 final size:34
Alignment explanation
Indices: 87003460--87003529 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
87003450 CGTTGGCCAC
87003460 TCGGCCCTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
*
87003494 TCGGCCTTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
87003528 TC
1 TC
87003530 ACATCTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.34, G:0.06, T:0.31
Consensus pattern (34 bp):
TCGGCCCTATCACATATATACACCTTCACATTCA
Found at i:87003519 original size:18 final size:18
Alignment explanation
Indices: 87003467--87003519 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
87003457 CACTCGGCCC
87003467 TATCACATATATACACC-
1 TATCACATATATACACCT
*
87003484 T-TCACAT-TCAT-CGGCCT
1 TATCACATAT-ATAC-ACCT
87003501 TATCACATATATACACCT
1 TATCACATATATACACCT
87003519 T
1 T
87003520 CACATTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 2 0.07
18 12 0.43
19 2 0.07
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (18 bp):
TATCACATATATACACCT
Found at i:87003553 original size:81 final size:82
Alignment explanation
Indices: 87003418--87003578 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 82
87003408 CCCTTCGGGA
* * * *
87003418 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC-ATATATACA
1 CTTATCACATATATACACCTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
87003482 CCTTCACATTCATCGGC
66 CCTTCACATTCATCGGC
* * *
87003499 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATCCATCACAT-TGGCCACTAGGCCCTATCACA-ATATATA
*
87003563 CACTTTCACATTCATC
64 CACCTTCACATTCATC
87003579 ACATCGGCCA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 46 0.67
82 1 0.01
83 22 0.32
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.33
Consensus pattern (82 bp):
CTTATCACATATATACACCTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
CCTTCACATTCATCGGC
Found at i:87003574 original size:49 final size:47
Alignment explanation
Indices: 87003496--87003721 Score: 371
Period size: 49 Copynumber: 4.7 Consensus size: 47
87003486 CACATTCATC
*
87003496 GGCCTTATCACATATATACACCTTCACATTCATCACATCTGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
87003543 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTA
* *
87003592 GGCCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTA
87003641 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
87003688 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
87003722 GCGTAAAATC
Statistics
Matches: 167, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
47 77 0.46
48 1 0.01
49 89 0.53
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
Found at i:87003607 original size:96 final size:94
Alignment explanation
Indices: 87003496--87003721 Score: 373
Period size: 96 Copynumber: 2.4 Consensus size: 94
87003486 CACATTCATC
87003496 GGCCTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATAT
1 GGCCTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATAT
*
87003560 ATACACTTTCACATTCATCACATCGGCCATTA
63 ATACACCTTCACATTCATCACATCGGCCATTA
*
87003592 GGCCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
87003657 TACACCTTCACATTCATCACATCGGCCATTA
64 TACACCTTCACATTCATCACATCGGCCATTA
*
87003688 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
87003722 GCGTAAAATC
Statistics
Matches: 124, Mismatches: 3, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
94 12 0.10
96 77 0.62
97 2 0.02
98 33 0.27
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
CACCTTCACATTCATCACATCGGCCATTA
Found at i:87007644 original size:16 final size:16
Alignment explanation
Indices: 87007623--87007678 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
87007613 CTCGGCCCTA
87007623 TCACATATATACACCT
1 TCACATATATACACCT
*
87007639 TCACAT-TCAT-CGGCCTT
1 TCACATAT-ATAC-ACC-T
87007656 ATCACATATATACACCT
1 -TCACATATATACACCT
87007673 TCACAT
1 TCACAT
87007679 TCATCACATC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 2 0.06
18 10 0.31
19 2 0.06
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (16 bp):
TCACATATATACACCT
Found at i:87007653 original size:34 final size:34
Alignment explanation
Indices: 87007614--87007683 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
87007604 CGTTGGCCAC
87007614 TCGGCCCTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
*
87007648 TCGGCCTTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
87007682 TC
1 TC
87007684 ACATCTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.34, G:0.06, T:0.31
Consensus pattern (34 bp):
TCGGCCCTATCACATATATACACCTTCACATTCA
Found at i:87007673 original size:18 final size:18
Alignment explanation
Indices: 87007621--87007673 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
87007611 CACTCGGCCC
87007621 TATCACATATATACACC-
1 TATCACATATATACACCT
*
87007638 T-TCACAT-TCAT-CGGCCT
1 TATCACATAT-ATAC-ACCT
87007655 TATCACATATATACACCT
1 TATCACATATATACACCT
87007673 T
1 T
87007674 CACATTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 2 0.07
18 12 0.43
19 2 0.07
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (18 bp):
TATCACATATATACACCT
Found at i:87007703 original size:47 final size:47
Alignment explanation
Indices: 87007650--87007875 Score: 362
Period size: 49 Copynumber: 4.7 Consensus size: 47
87007640 CACATTCATC
*
87007650 GGCCTTATCACATATATACACCTTCACATTCATCACATCTGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
87007697 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTA
* *
87007746 GGCCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTA
*
87007795 GGCCTTATCACATATATATACCTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
87007842 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
87007876 GCGTAAAATC
Statistics
Matches: 165, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
47 76 0.46
48 1 0.01
49 88 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
Found at i:87007707 original size:81 final size:82
Alignment explanation
Indices: 87007572--87007732 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 82
87007562 CCCTTCGGGA
* * * *
87007572 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC-ATATATACA
1 CTTATCACATATATACACCTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
87007636 CCTTCACATTCATCGGC
66 CCTTCACATTCATCGGC
* * *
87007653 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATCCATCACAT-TGGCCACTAGGCCCTATCACA-ATATATA
*
87007717 CACTTTCACATTCATC
64 CACCTTCACATTCATC
87007733 ACATCGGCCA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 46 0.67
82 1 0.01
83 22 0.32
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.33
Consensus pattern (82 bp):
CTTATCACATATATACACCTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
CCTTCACATTCATCGGC
Found at i:87007761 original size:96 final size:94
Alignment explanation
Indices: 87007650--87007875 Score: 382
Period size: 96 Copynumber: 2.4 Consensus size: 94
87007640 CACATTCATC
87007650 GGCCTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATAT
1 GGCCTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCACATATAT
87007714 ATACACTTTCACATTCATCACATCGGCCATTA
65 ATAC-C-TTCACATTCATCACATCGGCCATTA
*
87007746 GGCCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
87007811 TATACCTTCACATTCATCACATCGGCCATTA
64 TATACCTTCACATTCATCACATCGGCCATTA
*
87007842 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
87007876 GCGTAAAATC
Statistics
Matches: 125, Mismatches: 2, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
94 12 0.10
96 67 0.54
97 3 0.02
98 43 0.34
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
TACCTTCACATTCATCACATCGGCCATTA
Found at i:87015279 original size:13 final size:13
Alignment explanation
Indices: 87015261--87015288 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
87015251 ACATATTATA
87015261 AATATTTTGTGTT
1 AATATTTTGTGTT
87015274 AATATTTTGTGTT
1 AATATTTTGTGTT
87015287 AA
1 AA
87015289 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:87016732 original size:40 final size:40
Alignment explanation
Indices: 87016684--87016929 Score: 399
Period size: 40 Copynumber: 6.2 Consensus size: 40
87016674 GGACTAAGCT
87016684 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
87016724 CCGAAGGCATTTGTGCTGGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
87016764 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
87016804 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
87016844 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
87016884 CCGAAGGCATTTGTG-TGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTC
87016923 CCGAAGG
1 CCGAAGG
87016930 TACTTGGGTT
Statistics
Matches: 195, Mismatches: 9, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
39 16 0.08
40 177 0.91
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:87035533 original size:27 final size:26
Alignment explanation
Indices: 87035502--87035587 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
87035492 GCATCTAGAA
*
87035502 ACAGTAAATGTGGCAAAGCCACCAAT
1 ACAGTAAATGTGGCATAGCCACCAAT
** * *
87035528 ATCAGTATTTGTGGGATAGCCACCAGT
1 A-CAGTAAATGTGGCATAGCCACCAAT
* * *
87035555 AACAGTGAATGTGACATAGTCACCAAT
1 -ACAGTAAATGTGGCATAGCCACCAAT
87035582 ACAGTA
1 ACAGTA
87035588 CTTCCTCTAT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
26 6 0.13
27 38 0.84
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGGCATAGCCACCAAT
Found at i:87040760 original size:42 final size:42
Alignment explanation
Indices: 87040694--87040815 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
87040684 CTTACATGGA
* * *
87040694 TCTCGTATCGATGCCAATAGCCTAGCTATGGTCTTACACAAAG
1 TCTCATATCGATG-CAATATCCTAGATATGGTCTTACACAAAG
* * *
87040737 TCTCATATCGATGCTATATCCTAGATATGGACTTACACGAAG
1 TCTCATATCGATGCAATATCCTAGATATGGTCTTACACAAAG
* * * *
87040779 TCTCATATAGATGCCATATCCCAGATATGGTTTTACA
1 TCTCATATCGATGCAATATCCTAGATATGGTCTTACA
87040816 TATAATCTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 56 0.82
43 12 0.18
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
TCTCATATCGATGCAATATCCTAGATATGGTCTTACACAAAG
Found at i:87043003 original size:14 final size:13
Alignment explanation
Indices: 87042984--87043016 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
87042974 ATAATGTAAT
87042984 TTACCATAATCTCA
1 TTACCATAAT-TCA
87042998 TTACCATAATTCA
1 TTACCATAATTCA
87043011 TT-CCAT
1 TTACCAT
87043017 TACAAACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.39
Consensus pattern (13 bp):
TTACCATAATTCA
Found at i:87056386 original size:40 final size:39
Alignment explanation
Indices: 87056341--87056548 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
87056331 CGGAATACAA
*
87056341 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
87056381 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
87056421 CCGGATTTAACAACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
87056461 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
87056501 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
87056541 CCGGATAT
1 CCGGATAT
87056549 GTCATTCAAT
Statistics
Matches: 141, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:87056481 original size:80 final size:81
Alignment explanation
Indices: 87056341--87056546 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 81
87056331 CGGAATACAA
* *
87056341 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
87056405 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
87056421 CCGGATTTAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
87056484 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** ** * *
87056501 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGAT
87056547 ATGTCATTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:87063241 original size:23 final size:23
Alignment explanation
Indices: 87063210--87063280 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
87063200 CTGAATTGAT
87063210 AAACAGTAAGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
* *
87063233 AAACGGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
* * *
87063256 -AACAGTAATCTCAAATGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
87063278 AAA
1 AAA
87063281 TCAATAAGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 17 0.43
23 23 0.57
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (23 bp):
AAACAGTAAGCTCTATTGAGCTG
Found at i:87067215 original size:48 final size:48
Alignment explanation
Indices: 87067144--87067394 Score: 298
Period size: 48 Copynumber: 5.3 Consensus size: 48
87067134 TTATCCCATC
* * *
87067144 ACATGGCATTGGCATTGATATGTGATGCCATGTAAGACCATGTCTGGG
1 ACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
* * *
87067192 ACATGGCGTTGGCATCGATATGTGATCCCATGTAAGACCATAACTGGA
1 ACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
* *
87067240 ATATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATTTGGG
1 ACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
* * * * *
87067288 ATATGGCATTGGCATCGATATGAGA-CATCATGGAAGACCATAGCTGGG
1 ACATGGCATTGGCATCGATATGTGATC-CCATGTAAGACCATATCTGGG
* * *
87067336 -C-T---ATTGGCTTTGATATGTGATCCCATGTAAGACTATATCTGGG
1 ACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
*
87067379 ATATGGCATTGGCATC
1 ACATGGCATTGGCATC
87067395 TTACTGTGTG
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
43 32 0.19
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 133 0.79
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
ACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
Found at i:87075090 original size:48 final size:48
Alignment explanation
Indices: 87075007--87075202 Score: 284
Period size: 48 Copynumber: 4.1 Consensus size: 48
87074997 ACATTAGGGT
* *
87075007 TATGTGATCCCATGAAAGACCATGTCTCGGACATGGCATTGGCATCGA
1 TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* * * * *
87075055 TATGTGACCCCATGTAAGACCAGGTCTGGGGCATGGCATTGGCATTGA
1 TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
*
87075103 TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCAGTGGCATCGA
1 TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* * * *
87075151 TATTTGGTCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGA
1 TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
87075199 TATG
1 TATG
87075203 AGTCATCGTG
Statistics
Matches: 130, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
Found at i:87078275 original size:43 final size:44
Alignment explanation
Indices: 87078223--87078347 Score: 166
Period size: 43 Copynumber: 2.9 Consensus size: 44
87078213 ATCACATATC
* *
87078223 GATGTCAATGTCCTAGACATGGTCTTACACGAAATCA-TATA-A
1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATACA
* *
87078265 TGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
1 -GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATACA
* *
87078310 -ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACA
87078348 TCTCGGAAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 70 0.95
44 3 0.04
45 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATACA
Found at i:87083546 original size:43 final size:43
Alignment explanation
Indices: 87083376--87083547 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
87083366 CATAGGATTC
* * * * *
87083376 CGATATGTGATTTCGTGTAAGACCACGTCAGGGACATTGACAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
* ** * * *
87083419 CGAT-TTGAGATTTATGTGTAAGACTATGTCTGGGATATTGGCAT
1 CGATATT-TGA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * ** * * *
87083463 TG-TATATGATTTCATGTAAGACCTTGTTTGCGACAGTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
*
87083505 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
87083548 TGAACTAGCT
Statistics
Matches: 95, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
42 26 0.27
43 41 0.43
44 28 0.29
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:87086650 original size:27 final size:27
Alignment explanation
Indices: 87086620--87086709 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
87086610 ATTACCAAAG
87086620 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
87086647 TACCCTTGATTTACAGAATTGCTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
87086674 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
87086701 TACCCTCGA
1 TACCCTCGA
87086710 CTGGGAAATT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:87086845 original size:27 final size:27
Alignment explanation
Indices: 87086743--87086855 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
87086733 TGTAGGGTAG
* *
87086743 AATTACCAAAATACCCCT-AGTTGTAA
1 AATTACCAAAATATCCCTGATTTGTAA
* * *
87086769 AATTACCAAAATA-CAACTGGTTTGTGA
1 AATTACCAAAATATC-CCTGATTTGTAA
* *
87086796 AATTACCGAAATAT-CCTCAATTTGTAA
1 AATTACCAAAATATCCCT-GATTTGTAA
**
87086823 AATTACCAAAATATCCCTGATTTACAA
1 AATTACCAAAATATCCCTGATTTGTAA
87086850 AATTAC
1 AATTAC
87086856 AGAAATACCC
Statistics
Matches: 69, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.01
26 17 0.25
27 48 0.70
28 3 0.04
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATATCCCTGATTTGTAA
Found at i:87086882 original size:29 final size:27
Alignment explanation
Indices: 87086821--87086928 Score: 105
Period size: 27 Copynumber: 3.9 Consensus size: 27
87086811 CTCAATTTGT
*
87086821 AAAATTACCA-AAATATCCC-TGATTTAC
1 AAAATTA-CAGAAATA-CCCTTGGTTTAC
*
87086848 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTG-GTTTAC
* *
87086875 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTGGTTTAC
*
87086904 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCCTTGGTTT
87086929 GTAGATTTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 5 0.07
27 37 0.54
28 6 0.09
29 20 0.29
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGGTTTAC
Found at i:87087046 original size:27 final size:27
Alignment explanation
Indices: 87086969--87087046 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
87086959 AAATGACTAA
* *
87086969 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
87086996 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
87087023 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
87087047 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:87087912 original size:25 final size:26
Alignment explanation
Indices: 87087856--87087951 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
87087846 AGGAAGTGCT
*
87087856 AAAAGGGC-TTTGCCCCAG-TTACCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
*
87087880 AAAAGGGC-TTTGCCCCTGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
*
87087905 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCG
87087931 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
87087952 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
24 17 0.26
25 13 0.20
26 36 0.55
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCG
Found at i:87087964 original size:25 final size:25
Alignment explanation
Indices: 87087856--87087964 Score: 118
Period size: 26 Copynumber: 4.4 Consensus size: 25
87087846 AGGAAGTGCT
*
87087856 AAAAGGGC-TTTGCCCCAG-TTACCG
1 AAAAGGGCTTTTGCCCCAGTTTA-TG
*
87087880 AAAAGGGC-TTTGCCCCTGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTAT-G
*
87087905 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTAT-G
*
87087931 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATG
87087955 AAAAGAGGCT
1 AAAAG-GGCT
87087965 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
24 22 0.29
25 20 0.26
26 34 0.45
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATG
Found at i:87088158 original size:42 final size:42
Alignment explanation
Indices: 87088099--87088190 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
87088089 TAGTCTCCCC
*
87088099 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
87088141 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
87088183 AAATGGGC
1 AAATGGGC
87088191 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:87088249 original size:31 final size:31
Alignment explanation
Indices: 87088214--87088297 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
87088204 TGTTTACGAT
87088214 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
87088245 AAAGGCTTCGGCCCAGTGGTATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
87088276 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
87088298 TCAAAACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:87092161 original size:43 final size:44
Alignment explanation
Indices: 87092088--87092192 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 44
87092078 TCCTAGATAC
* * * *
87092088 GGTCTTACATGTTAGCAC-ATATCAATGCCAATGTCCCAAACTT
1 GGTCTTACATGTAATCACAATATCAAAGCCAATGTCCCAAACAT
* * **
87092131 GGTTTTACATGTAATCACAATA-CAAAGCCAATGTTCCGGACAT
1 GGTCTTACATGTAATCACAATATCAAAGCCAATGTCCCAAACAT
*
87092174 GGTCTTATATGTAATCACA
1 GGTCTTACATGTAATCACA
87092193 TCTCGGTAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 48 0.94
44 3 0.06
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.30
Consensus pattern (44 bp):
GGTCTTACATGTAATCACAATATCAAAGCCAATGTCCCAAACAT
Found at i:87095379 original size:19 final size:20
Alignment explanation
Indices: 87095355--87095392 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
87095345 GGTACCACCA
87095355 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
87095374 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
87095393 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:87095688 original size:46 final size:45
Alignment explanation
Indices: 87095621--87095788 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
87095611 CGCCCCTAAG
*
87095621 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* * *
87095667 TGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
87095714 CGAACTCGGACTCAACTCAACGAGTCCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
87095760 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
87095789 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 54 0.54
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:87095732 original size:93 final size:93
Alignment explanation
Indices: 87095622--87095792 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
87095612 GCCCCTAAGT
* *
87095622 GAACTCGGACTCAACTCAACGAG-CTCGGGCGTTCGCATCCATAAATGAACTCGAACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTC-CGGACATTCGCATCCATAAATGAACTCGAACTCAACTCA
87095686 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
87095715 GAACTCGGACTCAACTCAACGAGTCCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
87095780 CGAGTTCGGATGC
66 CGAGTTCGGATGC
87095793 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87098127 original size:48 final size:49
Alignment explanation
Indices: 87098050--87098418 Score: 265
Period size: 48 Copynumber: 7.9 Consensus size: 49
87098040 AAACATAGTA
* ****
87098050 AGATGCCAATGCCATATCCCAGGTGTGGTCTTACATGGGATCACATATC
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* **
87098099 AG-TGCCAATGTCATGTCCCAAACATGGTCTTACAT--GATGTC-T-T-
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * * * *****
87098142 ATAT--CGATGCCATGTCCCAGACATTGTCTTACGCAAAATCACATAT-
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * * * *
87098188 AGATTCCAATGCCATGTCCCAAATATTGACTTATATGGGATCACATATC
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * *
87098237 -GATGCCAATGCCATTTCCCAAACATGGTCTTACATGATG-TCTCATATC
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATG-GGATCACATATC
** * **
87098285 -GATG----T--CATGTCCCAGGCATGGTCTTACACGAAATCACATAT-
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * * *
87098326 AGATGCCAATGCCATATCCCATATATGGTCTTACATCGGATCACATATC
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* *
87098375 -GATGGCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
87098419 CATAACCCTA
Statistics
Matches: 245, Mismatches: 57, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
42 56 0.23
43 1 0.00
44 6 0.02
45 2 0.01
46 9 0.04
48 168 0.69
49 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
AGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
Found at i:87098309 original size:138 final size:138
Alignment explanation
Indices: 87098050--87098410 Score: 517
Period size: 138 Copynumber: 2.6 Consensus size: 138
87098040 AAACATAGTA
** * * *
87098050 AGATGCCAATGCCATATCCCAGGTGTGGTCTTACATGGGATCACATATC-AGTGCCAATGTCATG
1 AGATGCCAATGCCATATCCCAAATATGGACTTACATGGGATCACATATCGA-TGCCAATGCCATG
* * *
87098114 TCCCAAACATGGTCTTACATGATGTCTTATATCGATGCCATGTCCCAGACATTGTCTTACGCAAA
65 TCCCAAACATGGTCTTACATGATGTCTCATATCGATGCCATGTCCCAGACATGGTCTTACACAAA
87098179 ATCACATAT
130 ATCACATAT
* * * * *
87098188 AGATTCCAATGCCATGTCCCAAATATTGACTTATATGGGATCACATATCGATGCCAATGCCATTT
1 AGATGCCAATGCCATATCCCAAATATGGACTTACATGGGATCACATATCGATGCCAATGCCATGT
* * *
87098253 CCCAAACATGGTCTTACATGATGTCTCATATCGATGTCATGTCCCAGGCATGGTCTTACACGAAA
66 CCCAAACATGGTCTTACATGATGTCTCATATCGATGCCATGTCCCAGACATGGTCTTACACAAAA
87098318 TCACATAT
131 TCACATAT
* * * *
87098326 AGATGCCAATGCCATATCCCATATATGGTCTTACATCGGATCACATATCGATGGCAATGCCATGT
1 AGATGCCAATGCCATATCCCAAATATGGACTTACATGGGATCACATATCGATGCCAATGCCATGT
*
87098391 CCCAGACATGGTCTTACATG
66 CCCAAACATGGTCTTACATG
87098411 GGATCACACA
Statistics
Matches: 196, Mismatches: 26, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
138 195 0.99
139 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (138 bp):
AGATGCCAATGCCATATCCCAAATATGGACTTACATGGGATCACATATCGATGCCAATGCCATGT
CCCAAACATGGTCTTACATGATGTCTCATATCGATGCCATGTCCCAGACATGGTCTTACACAAAA
TCACATAT
Found at i:87099865 original size:21 final size:21
Alignment explanation
Indices: 87099841--87099880 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
87099831 AAGTCATATC
87099841 TGGTCGAATATCAACTTCAGT
1 TGGTCGAATATCAACTTCAGT
*
87099862 TGGTCGAATATCAATTTCA
1 TGGTCGAATATCAACTTCA
87099881 TGCAAACGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
TGGTCGAATATCAACTTCAGT
Found at i:87107202 original size:19 final size:18
Alignment explanation
Indices: 87107161--87107202 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
87107151 GAATTGTTGA
*
87107161 AATTTTTTCTATGTTTCT
1 AATTTTTTCTATGTTACT
87107179 AATTTTTTCATATGTTACT
1 AATTTTTTC-TATGTTACT
*
87107198 GATTT
1 AATTT
87107203 AGTCCCGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (18 bp):
AATTTTTTCTATGTTACT
Found at i:87108372 original size:30 final size:30
Alignment explanation
Indices: 87108336--87108396 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
87108326 ATAAAAAAAA
87108336 TTTAGAGAATATCATCCTCATTCTACTACC
1 TTTAGAGAATATCATCCTCATTCTACTACC
87108366 TTTAGAGAATATCATCCTCATTCTACTACC
1 TTTAGAGAATATCATCCTCATTCTACTACC
87108396 T
1 T
87108397 CTGCGGGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTAGAGAATATCATCCTCATTCTACTACC
Found at i:87112763 original size:39 final size:40
Alignment explanation
Indices: 87112585--87112767 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
87112575 CCGCACCAAG
* * * * * * * *
87112585 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
87112625 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
87112665 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
87112705 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
87112744 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
87112768 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:87120198 original size:39 final size:40
Alignment explanation
Indices: 87120020--87120202 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
87120010 CCGCACCAAG
* * * * * * * *
87120020 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
87120060 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
87120100 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
87120140 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
87120179 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
87120203 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:87123536 original size:22 final size:22
Alignment explanation
Indices: 87123511--87123568 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
87123501 AGCTTGTATG
*
87123511 AGCTTACTGTTCAGCTC-GTCAA
1 AGCTTACTGTTCAGCTCAAT-AA
*
87123533 AGCTTA-TCGTTTCAGCTCAATAG
1 AGCTTACT-G-TTCAGCTCAATAA
87123556 AGCTTACTGTTCA
1 AGCTTACTGTTCA
87123569 TCAGTTCAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
21 1 0.03
22 11 0.37
23 16 0.53
24 2 0.07
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (22 bp):
AGCTTACTGTTCAGCTCAATAA
Found at i:87126507 original size:27 final size:28
Alignment explanation
Indices: 87126442--87126511 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
87126432 AAATTTGTAC
87126442 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
87126470 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
87126497 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87126512 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:87126522 original size:27 final size:27
Alignment explanation
Indices: 87126442--87126523 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
87126432 AAATTTGTAC
* *
87126442 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
87126470 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
87126497 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
87126524 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:87130849 original size:48 final size:48
Alignment explanation
Indices: 87130791--87131082 Score: 451
Period size: 48 Copynumber: 6.0 Consensus size: 48
87130781 TTGATGCATA
87130791 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
87130839 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
87130887 AGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
87130939 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
87130987 AGAAATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
* *
87131037 AGATATGTATATGTGGTAAAGCCGAGTGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
87131083 GGCGATGTGT
Statistics
Matches: 224, Mismatches: 12, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.00
48 131 0.58
49 5 0.02
50 41 0.18
51 2 0.01
52 44 0.20
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:87130976 original size:100 final size:98
Alignment explanation
Indices: 87130791--87131082 Score: 482
Period size: 100 Copynumber: 3.0 Consensus size: 98
87130781 TTGATGCATA
*
87130791 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
87130854 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
66 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
87130887 AGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGATATGTATATG
87130952 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
64 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
87130987 AGAAATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGTATATGT
* *
87131051 GGTAAAGCCGAGTGGCTAGTGTGAAATATGTA
65 GGTAAAGCCGAATGGCTAATGTGAAATATGTA
87131083 GGCGATGTGT
Statistics
Matches: 184, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
96 36 0.20
98 56 0.30
99 4 0.02
100 88 0.48
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:87131098 original size:148 final size:147
Alignment explanation
Indices: 87130791--87131079 Score: 463
Period size: 148 Copynumber: 1.9 Consensus size: 147
87130781 TTGATGCATA
* *
87130791 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGCATATGTGGT
*
87130856 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAAT
* *
87130921 GTGAAATATATATATAT
131 GTGAAATATATAGAGAT
87130938 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGCATATGTGG
1 -AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGCATATGTGG
* *
87131003 TAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAGTGGC
65 TAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGC
*
87131067 TAGTGTGAAATAT
127 TAATGTGAAATAT
87131080 GTAGGCGATG
Statistics
Matches: 132, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
147 1 0.01
148 81 0.61
149 2 0.02
150 48 0.36
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (147 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGCATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATATAGAGAT
Found at i:87131279 original size:37 final size:37
Alignment explanation
Indices: 87131229--87131336 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
87131219 GGAAATATAT
87131229 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87131266 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** * * *
87131303 TCCAAGTAAGACCCAATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
87131337 TCATCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:87133298 original size:48 final size:48
Alignment explanation
Indices: 87133221--87133598 Score: 336
Period size: 48 Copynumber: 8.1 Consensus size: 48
87133211 AAATCTCATA
* * * *
87133221 CACATAGTAAGATGCCAATGCCATATCCCAGATATAGTCCTACATGGGAT
1 CACATA-T-AGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
*
87133271 CACATATAGGTGCCAATGCCATGTCCCAGACATGGTCTTACAT--GAT
1 CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
** * **
87133317 GTC-TCAT--AT--CAATGCCATGTCCCAGACATGGTATTACATGAAAT
1 CACAT-ATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
* * * *
87133361 CACATATAGATGCCAATGCTATATCCCAGATATGGTCTTACATGATG-T
1 CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGAT
* * *
87133409 CACATATCGGTGCTAATGCCATGTCCCAGACATGGTCTTACAT--GAT
1 CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
** * * * **
87133455 GTC-TCAT--AT--CGATGCCATGTCCCATACATGGTCTTACACGAAAT
1 CACAT-ATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
* * * *
87133499 CACATATAGATGCCAATGCAATATCCCAGATATGGCCTTACATGGGAT
1 CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
* *
87133547 CACATATTGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT
1 CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
87133595 CACA
1 CACA
87133599 CATAACCCTA
Statistics
Matches: 261, Mismatches: 49, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
42 55 0.21
44 12 0.05
45 5 0.02
46 14 0.05
48 168 0.64
49 1 0.00
50 6 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
CACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
Found at i:87133389 original size:90 final size:90
Alignment explanation
Indices: 87133236--87133590 Score: 321
Period size: 90 Copynumber: 3.9 Consensus size: 90
87133226 AGTAAGATGC
* * * * * *
87133236 CAATGCCATATCCCAGATATAGTCCTACATGGGATCACATATAGGTGCCAATGCCATGTCCCAGA
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATAGATGCCAATGCCATGTCCCAGA
*
87133301 CATGGTCTTACATGATGTCTCATAT
66 CATGGTCTTACATGATGTCACATAT
* * * *
87133326 CAATGCCATGTCCCAGACATGGTATTACATGAAATCACATATAGATGCCAATGCTATATCCCAGA
1 CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATAGATGCCAATGCCATGTCCCAGA
*
87133391 TATGGTCTTACATGATGTCACATATCGGT
66 CATGGTCTTACATGATGTCACATA----T
* *
87133420 GCTAATGCCATGTCCCAGACATGGTCTTACATGATG-TCTC--AT--AT--CGATGCCATGTCCC
1 -C-AATGCCATGTCCCAGACATGGTCTTACATGA-GATCACATATAGATGCCAATGCCATGTCCC
* * **
87133478 ATACATGGTCTTACACGAAATCACATAT
63 AGACATGGTCTTACATGATGTCACATAT
* * * *
87133506 -AGATGCCAATGCAATATCCCAGATATGGCCTTACATGGGATCACATATTGATGCCAATGCCATG
1 CA-ATGCC-ATG-----TCCCAGACATGGTCTTACATGAGATCACATATAGATGCCAATGCCATG
*
87133570 TCCCAAACATGGTCTTACATG
59 TCCCAGACATGGTCTTACATG
87133591 GGATCACACA
Statistics
Matches: 214, Mismatches: 30, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
83 1 0.00
84 5 0.02
85 3 0.01
86 1 0.00
89 1 0.00
90 132 0.62
92 4 0.02
94 5 0.02
95 1 0.00
96 61 0.29
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (90 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATAGATGCCAATGCCATGTCCCAGA
CATGGTCTTACATGATGTCACATAT
Found at i:87133478 original size:138 final size:138
Alignment explanation
Indices: 87133221--87133590 Score: 571
Period size: 138 Copynumber: 2.7 Consensus size: 138
87133211 AAATCTCATA
* * *
87133221 CACATAGTAAGATGCCAATGCCATATCCCAGATATAGTCCTACATGGGATCACATATAGGTGCCA
1 CACATA-T-AGATGCCAATGCAATATCCCAGATATGGTCTTACATGGGATCACATATAGGTGCCA
87133286 ATGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCAATGCCATGTCCCAGACATGGTAT
64 ATGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCAATGCCATGTCCCAGACATGGTAT
*
87133351 TACATGAAAT
129 TACACGAAAT
* * * *
87133361 CACATATAGATGCCAATGCTATATCCCAGATATGGTCTTACATGATG-TCACATATCGGTGCTAA
1 CACATATAGATGCCAATGCAATATCCCAGATATGGTCTTACATG-GGATCACATATAGGTGCCAA
* * *
87133425 TGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCGATGCCATGTCCCATACATGGTCTT
65 TGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCAATGCCATGTCCCAGACATGGTATT
87133490 ACACGAAAT
130 ACACGAAAT
* * *
87133499 CACATATAGATGCCAATGCAATATCCCAGATATGGCCTTACATGGGATCACATATTGATGCCAAT
1 CACATATAGATGCCAATGCAATATCCCAGATATGGTCTTACATGGGATCACATATAGGTGCCAAT
*
87133564 GCCATGTCCCAAACATGGTCTTACATG
66 GCCATGTCCCAGACATGGTCTTACATG
87133591 GGATCACACA
Statistics
Matches: 211, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
137 1 0.00
138 202 0.96
139 2 0.01
140 6 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (138 bp):
CACATATAGATGCCAATGCAATATCCCAGATATGGTCTTACATGGGATCACATATAGGTGCCAAT
GCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCAATGCCATGTCCCAGACATGGTATTA
CACGAAAT
Found at i:87133505 original size:42 final size:42
Alignment explanation
Indices: 87133286--87133513 Score: 231
Period size: 42 Copynumber: 5.1 Consensus size: 42
87133276 ATAGGTGCCA
* *
87133286 ATGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCA
1 ATGCCATGTCCCAGACATGGTCTTACATGATGTCACATATCG
* ** *
87133328 ATGCCATGTCCCAGACATGGTATTACATGAAATCACATATAG
1 ATGCCATGTCCCAGACATGGTCTTACATGATGTCACATATCG
*
87133370 ATGCCAATGCTATATCCCAGATATGGTCTTACATGATGTCACATATCGGTG
1 ATGCC-ATG-----TCCCAGACATGGTCTTACATGATGTCACATATC---G
*
87133421 CTAATGCCATGTCCCAGACATGGTCTTACATGATGTCTCATATCG
1 ---ATGCCATGTCCCAGACATGGTCTTACATGATGTCACATATCG
* * ** *
87133466 ATGCCATGTCCCATACATGGTCTTACACGAAATCACATATAG
1 ATGCCATGTCCCAGACATGGTCTTACATGATGTCACATATCG
87133508 ATGCCA
1 ATGCCA
87133514 ATGCAATATC
Statistics
Matches: 155, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
42 83 0.54
43 3 0.02
45 1 0.01
48 59 0.38
51 1 0.01
53 3 0.02
54 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGATGTCACATATCG
Found at i:87135567 original size:20 final size:20
Alignment explanation
Indices: 87135542--87135590 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
87135532 GGGTCACACA
87135542 CCCGTGTGGTTTATGATACG
1 CCCGTGTGGTTTATGATACG
87135562 CCCGTGTGGTTTATGATACG
1 CCCGTGTGGTTTATGATACG
*
87135582 CTCGTGTGG
1 CCCGTGTGG
87135591 GTAGGTTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.20, G:0.33, T:0.35
Consensus pattern (20 bp):
CCCGTGTGGTTTATGATACG
Found at i:87157801 original size:27 final size:26
Alignment explanation
Indices: 87157753--87157812 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
87157743 ACGAGGCTGC
*
87157753 CAGATATTATGACGAAGTCACCAGATA
1 CAGATATTATGACGAAGCCACCAGA-A
* * *
87157780 CAGATATTGTGGCTAAGCCACCAGAA
1 CAGATATTATGACGAAGCCACCAGAA
87157806 CAGATAT
1 CAGATAT
87157813 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTATGACGAAGCCACCAGAA
Found at i:87159471 original size:258 final size:258
Alignment explanation
Indices: 87159035--87159516 Score: 689
Period size: 258 Copynumber: 1.9 Consensus size: 258
87159025 AGTCAGAAAG
* * *
87159035 TGGTTTCGGGACCACAAAATCGAGACATAAAAATAATTTAATATTCATTTTGATGCCTATAATAT
1 TGGTTTCGGGACCACAAAACCGAGACATAAAAATAATTTAAAATTCATTTCGATGCCTATAATAT
* * * *
87159100 GTGTTAATTCATGTGTGACATTTTTGATGTTTTAACTTAGAGTTATAAATGTGAATTTCACTAAA
66 GTGTTAATTCATGTATGACATTTTTGATGTATTAACTTAGAGTTATAAAGGTGAATTCCACTAAA
* * * * * * * * **
87159165 AAGGGCTTAGTAGTAAACTTTGAAAGTATGATGGGGAAATGTGTGATGACTAGTTGATTCATGCA
131 AAGGACTTAGTAGTAAACTTTGAAAATACGATAGGGAAAGGGGTGATGACTAATTAAAGCATGCA
* *
87159230 TGCAAAATAGTGGAGTTGCATGTCAAATTTTGTGACAGCCCAAAATAGACCCTAGCCGGAATA
196 TGCAAAATAATGGACTTGCATGTCAAATTTTGTGACAGCCCAAAATAGACCCTAGCCGGAATA
* * *
87159293 TGGTTTCGGGACCACAAAACCGAGGCATAACAATAATTTAAAATTTATTTCGATGCCTATAATAT
1 TGGTTTCGGGACCACAAAACCGAGACATAAAAATAATTTAAAATTCATTTCGATGCCTATAATAT
* * *
87159358 GTGTGT-ATTCATGTATGACATTTTTTGATG-ATTGATTTAGTGTTATAAAGGTGAATTCCACTA
66 GTGT-TAATTCATGTATGACA-TTTTTGATGTATTAACTTAGAGTTATAAAGGTGAATTCCACTA
* *
87159421 GAAAGGACTTAGTAGTGAACTTTGAAAATACGATAGGGAAAGGGGTGATGACTAATTAAAGCATG
129 AAAAGGACTTAGTAGTAAACTTTGAAAATACGATAGGGAAAGGGGTGATGACTAATTAAAGCATG
87159486 CATGCAAAATAATGGACTTGCATGTCAAATT
194 CATGCAAAATAATGGACTTGCATGTCAAATT
87159517 CCCCCTTTTT
Statistics
Matches: 195, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
258 185 0.95
259 10 0.05
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (258 bp):
TGGTTTCGGGACCACAAAACCGAGACATAAAAATAATTTAAAATTCATTTCGATGCCTATAATAT
GTGTTAATTCATGTATGACATTTTTGATGTATTAACTTAGAGTTATAAAGGTGAATTCCACTAAA
AAGGACTTAGTAGTAAACTTTGAAAATACGATAGGGAAAGGGGTGATGACTAATTAAAGCATGCA
TGCAAAATAATGGACTTGCATGTCAAATTTTGTGACAGCCCAAAATAGACCCTAGCCGGAATA
Found at i:87161009 original size:40 final size:40
Alignment explanation
Indices: 87160950--87161091 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
87160940 AAATTGAATG
* *
87160950 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
87160990 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
87161030 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
87161070 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
87161092 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:87161092 original size:40 final size:39
Alignment explanation
Indices: 87160989--87161117 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
87160979 TGCTGGAAAT
* * *
87160989 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
87161029 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
87161069 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
87161109 TATATCCGG
1 TATATCCGG
87161118 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:87164907 original size:47 final size:47
Alignment explanation
Indices: 87164850--87165328 Score: 733
Period size: 47 Copynumber: 10.2 Consensus size: 47
87164840 GATATGTATT
*
87164850 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
87164897 TGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
87164944 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
87164991 TGTCATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
87165038 TGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
87165085 TGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATCTA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
87165132 TGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
87165179 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
87165226 TGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
87165273 TGTGATAAGGCCGAATGGCCAAAGTGATGGATGTGAAAGTGTATAAA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
87165320 TGTGATAAG
1 TGTGATAAG
87165329 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 42, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 390 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
Found at i:87175010 original size:27 final size:27
Alignment explanation
Indices: 87174882--87175013 Score: 160
Period size: 27 Copynumber: 4.9 Consensus size: 27
87174872 AAACCTTCAG
* *
87174882 TTTGTAAAATTACCAAAATATACC-CAG
1 TTTGTAAAATTACCAAAATA-CCCTCAA
*
87174909 TTTGTAAAATTACCGAAATACCCTCGAA
1 TTTGTAAAATTACCAAAATACCCTC-AA
* * *
87174937 -TTATAAAATTATCAAAATACCCCCAA
1 TTTGTAAAATTACCAAAATACCCTCAA
* *
87174963 TTTTTAAAATTACAAAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCTCAA
87174990 TTTGTAAAATTACCAAAATACCCT
1 TTTGTAAAATTACCAAAATACCCT
87175014 TATAGTGTAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.04
27 84 0.94
28 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCAA
Found at i:87176443 original size:93 final size:93
Alignment explanation
Indices: 87176284--87176454 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
87176274 GGATGGTTGA
* * * *
87176284 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGAGAACGCCCAAACTCGTTGAGT
*
87176349 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
87176377 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGAGAACGCCCAAACTCGTTGAGT
87176442 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87176455 ACTTAGGGGT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGAGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87176457 original size:46 final size:46
Alignment explanation
Indices: 87176291--87176459 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
87176281 TGAGCATCCA
* * * * *
87176291 AACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCG
* * * *
87176337 AACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--ACGC--CCG
* *
87176384 AACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGAGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCG
*
87176430 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
87176460 GGGGTGGGTT
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 54 0.56
47 24 0.25
48 5 0.05
49 1 0.01
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCG
Found at i:87181482 original size:27 final size:28
Alignment explanation
Indices: 87181452--87181521 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87181442 ATAATAAGTC
*
87181452 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87181479 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87181507 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87181522 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87189557 original size:27 final size:28
Alignment explanation
Indices: 87189527--87189596 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
87189517 ATAATAAGTC
*
87189527 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
87189554 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
87189582 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87189597 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87191896 original size:27 final size:27
Alignment explanation
Indices: 87191873--87191934 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
87191863 CCATGTGCTT
* *
87191873 ATCATATTTATTGATGACTCTGTGTCG
1 ATCATATTTAGTCATGACTCTGTGTCG
*
87191900 ATCATATTTAGTCATGACTGTGTGTCG
1 ATCATATTTAGTCATGACTCTGTGTCG
87191927 ATCATATT
1 ATCATATT
87191935 ACCATTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (27 bp):
ATCATATTTAGTCATGACTCTGTGTCG
Found at i:87192273 original size:27 final size:27
Alignment explanation
Indices: 87192206--87192273 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
87192196 TATTACTGAG
* * ** *
87192206 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATAATGTA
* *
87192232 ATGGGCTGTGACCCAAATGATAATGTA
1 ATGGGCTTTGGCCCAAATGATAATGTA
87192259 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
87192274 TTTATGCTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATAATGTA
Found at i:87195215 original size:39 final size:39
Alignment explanation
Indices: 87195161--87195285 Score: 187
Period size: 39 Copynumber: 3.2 Consensus size: 39
87195151 GAAATGTGTA
87195161 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* **
87195200 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCATGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* **
87195239 TGGAAATGTATCCGGGCTAAACTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
87195278 TGGTAATA
1 TGGAAATA
87195286 AAATTTCGGG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:87200300 original size:22 final size:20
Alignment explanation
Indices: 87200271--87200314 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
87200261 CCCTTAATTT
87200271 ACCCAGTTATTAACCTTTAAA
1 ACCCAGTTATTAACC-TTAAA
* *
87200292 ACCCTAGTTTTTCACCTTAAA
1 ACCC-AGTTATTAACCTTAAA
87200313 AC
1 AC
87200315 ACCTTAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (20 bp):
ACCCAGTTATTAACCTTAAA
Found at i:87203336 original size:16 final size:16
Alignment explanation
Indices: 87203315--87203365 Score: 65
Period size: 14 Copynumber: 3.4 Consensus size: 16
87203305 ATACCAAGTA
87203315 CATATACACTTATATG
1 CATATACACTTATATG
*
87203331 CATAT--ACTCATA--
1 CATATACACTTATATG
87203343 CATATACACTTATATG
1 CATATACACTTATATG
87203359 CATATAC
1 CATATAC
87203366 TCATAAGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 5 0.17
14 12 0.41
16 12 0.41
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (16 bp):
CATATACACTTATATG
Found at i:87203344 original size:28 final size:28
Alignment explanation
Indices: 87203313--87203370 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
87203303 TCATACCAAG
87203313 TACATATACACTTATATGCATATACTCA
1 TACATATACACTTATATGCATATACTCA
87203341 TACATATACACTTATATGCATATACTCA
1 TACATATACACTTATATGCATATACTCA
87203369 TA
1 TA
87203371 AGTCAGAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.36
Consensus pattern (28 bp):
TACATATACACTTATATGCATATACTCA
Found at i:87203836 original size:45 final size:45
Alignment explanation
Indices: 87203722--87203842 Score: 161
Period size: 45 Copynumber: 2.7 Consensus size: 45
87203712 ATGTCGATGT
* * * * *
87203722 CCCAGACATGGTCTTACACGTAACCACATATATTGATGCCAACGT
1 CCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAACGC
**
87203767 CCCAGACGTGGTCTTACTTGAAATCACATATATCGATGCCAACGC
1 CCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAACGC
* *
87203812 CCCAGACGTGGTCTTACACAAAATCAAATAT
1 CCCAGACGTGGTCTTACACGAAATCACATAT
87203843 CGGAATCCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (45 bp):
CCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAACGC
Found at i:87204298 original size:30 final size:27
Alignment explanation
Indices: 87204264--87204332 Score: 68
Period size: 31 Copynumber: 2.4 Consensus size: 27
87204254 TGTTCATACA
87204264 AGTCCATAATTT-TCATTTATTTCACATTTT
1 AGTCC-TAATTTATCATTT-TTTCA-A-TTT
*
87204294 AGTCCCTCAATTTATTATTTTTTCAATTT
1 AGT-CCT-AATTTATCATTTTTTCAATTT
87204323 AGTCCTAATT
1 AGTCCTAATT
87204333 ACTCAAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
27 4 0.11
28 3 0.09
29 6 0.17
30 5 0.14
31 12 0.34
32 5 0.14
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.52
Consensus pattern (27 bp):
AGTCCTAATTTATCATTTTTTCAATTT
Found at i:87206300 original size:28 final size:28
Alignment explanation
Indices: 87206231--87206331 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
87206221 GACAAGATTG
* * * *
87206231 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
87206261 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
87206289 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
87206318 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87206332 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:87214210 original size:28 final size:28
Alignment explanation
Indices: 87214141--87214241 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
87214131 GACAAGATTG
* * * *
87214141 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
87214171 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
87214199 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
87214228 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87214242 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:87218691 original size:20 final size:20
Alignment explanation
Indices: 87218666--87218703 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87218656 GTAACATATA
87218666 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
87218686 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
87218704 TAGTTCCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:87222374 original size:20 final size:20
Alignment explanation
Indices: 87222349--87222389 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
87222339 AACACAACAA
87222349 CAAACTTGTCCAAATATGGC
1 CAAACTTGTCCAAATATGGC
87222369 CAAACTTGTCCAAATATGGC
1 CAAACTTGTCCAAATATGGC
87222389 C
1 C
87222390 GAAATATTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (20 bp):
CAAACTTGTCCAAATATGGC
Found at i:87230130 original size:40 final size:40
Alignment explanation
Indices: 87230064--87230230 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
87230054 AAATCGAATA
* * *
87230064 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
87230103 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
87230143 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
87230183 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
87230223 ATATCCGG
1 ATATCCGG
87230231 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:87234075 original size:241 final size:241
Alignment explanation
Indices: 87233641--87234108 Score: 611
Period size: 241 Copynumber: 1.9 Consensus size: 241
87233631 TTCATAATCT
** *** *
87233641 AATGCAATTTCATGCTTAAAGCTTCTAGAATGCAAGTTTTGTGCTTTATTCAATTTGGTCCCTAA
1 AATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTTCAACTTTATTCAATTTAGTCCCTAA
** * * * * * *
87233706 AATGTAATTAGATATTTTATGCATAGAATTTCTTCATGAAACTTTCACACAAGCACGCATTCATA
66 AATCAAATTAGACACTTTAGGCATAGAATTTCTTCATGAAAATTTCACACAAACACGCAATCATA
* * **
87233771 ACATAAACCTCATAATAATCATAAAATAATTATTTCTATCTTTAATTTTTGGTCTTGAAACCACT
131 ACATAAACCTCATAATAATCATAAAATAATTATTTCTATCTTCAATTTGTGGTCTCAAAACCACT
** * *
87233836 ATTCTGACTAGGCCCTAATTCGGGATGTTACACAAATTAATTATCC
196 ATTCCAACTAGACCCTAATTCGGAATGTTACACAAATTAATTATCC
*
87233882 AATGCAATTTCATGCTTGAAGCTTCTAGAACACAAGTTTTACAAC-TTATTCAATTTAGTCCCTA
1 AATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTT-CAACTTTATTCAATTTAGTCCCTA
* * *
87233946 AAGTCAAATTGGACACTTTAGGCATAGAATTT-TTGCATGAAAATTTCACACAAACATGCAATCA
65 AAATCAAATTAGACACTTTAGGCATAGAATTTCTT-CATGAAAATTTCACACAAACACGCAATCA
* *
87234010 TATCATAGACCATCA-AATAATCATAAAATAATTATTTCTAT-TTCAGATTTGTGGTCTCAAAAC
129 TAACATAAACC-TCATAATAATCATAAAATAATTATTTCTATCTTCA-ATTTGTGGTCTCAAAAC
*
87234073 CACTGTTCCAACTAGACCCTAATTCGGAATGTTACA
192 CACTATTCCAACTAGACCCTAATTCGGAATGTTACA
87234109 ACTTTCCCCC
Statistics
Matches: 194, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
240 5 0.03
241 185 0.95
242 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (241 bp):
AATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTTCAACTTTATTCAATTTAGTCCCTAA
AATCAAATTAGACACTTTAGGCATAGAATTTCTTCATGAAAATTTCACACAAACACGCAATCATA
ACATAAACCTCATAATAATCATAAAATAATTATTTCTATCTTCAATTTGTGGTCTCAAAACCACT
ATTCCAACTAGACCCTAATTCGGAATGTTACACAAATTAATTATCC
Found at i:87244039 original size:19 final size:19
Alignment explanation
Indices: 87244015--87244054 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
87244005 TGAAAATGTG
87244015 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTATAAATT
* *
87244034 TAAGTTATTCCTATGAATT
1 TAAGTTATGCCTATAAATT
87244053 TA
1 TA
87244055 TGATGACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (19 bp):
TAAGTTATGCCTATAAATT
Found at i:87244950 original size:17 final size:17
Alignment explanation
Indices: 87244928--87244963 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
87244918 AGAGACAAGA
87244928 CCGTGTGAAGAACACGG
1 CCGTGTGAAGAACACGG
87244945 CCGTGTGAAGAACACGG
1 CCGTGTGAAGAACACGG
87244962 CC
1 CC
87244964 TCAAGACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.11
Consensus pattern (17 bp):
CCGTGTGAAGAACACGG
Found at i:87245980 original size:23 final size:23
Alignment explanation
Indices: 87245954--87245998 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
87245944 TATATACTAA
*
87245954 ATATATATATTTTATTTTTAATC
1 ATATATACATTTTATTTTTAATC
*
87245977 ATATTTACATTTTATTTTTAAT
1 ATATATACATTTTATTTTTAAT
87245999 TTTAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATATACATTTTATTTTTAATC
Found at i:87247007 original size:24 final size:24
Alignment explanation
Indices: 87246927--87247031 Score: 86
Period size: 24 Copynumber: 4.2 Consensus size: 24
87246917 AGCTCCTCTT
* *
87246927 GAGCTGATAGACAATAAGCT-TTGAC
1 GAGCTGATA-ATAGTAAGCTCTT-AC
* * *
87246952 GAGCTAAAAATAGTAATCTCTTAC
1 GAGCTGATAATAGTAAGCTCTTAC
87246976 GAGCTGATAATAGTAAGCTCTTAC
1 GAGCTGATAATAGTAAGCTCTTAC
* * *
87247000 GAGTTGATATATCGATAAGCTCATAC
1 GAGCTGATA-ATAG-TAAGCTCTTAC
*
87247026 AAGCTG
1 GAGCTG
87247032 TGGTGATTCC
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
24 38 0.59
25 12 0.19
26 14 0.22
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (24 bp):
GAGCTGATAATAGTAAGCTCTTAC
Found at i:87248855 original size:13 final size:13
Alignment explanation
Indices: 87248837--87248866 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
87248827 CGCCCATGTA
87248837 CTTAGGCCGTGTG
1 CTTAGGCCGTGTG
87248850 CTTAGGCCGTGTG
1 CTTAGGCCGTGTG
87248863 CTTA
1 CTTA
87248867 ATATTGAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.33, T:0.33
Consensus pattern (13 bp):
CTTAGGCCGTGTG
Found at i:87251146 original size:28 final size:29
Alignment explanation
Indices: 87251092--87251158 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
87251082 GAAAGCATGT
*
87251092 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCATAATGGGCC
*
87251121 ATATGAATGA-GA-TTGGGCATAGTGGGCC
1 ATATGAAT-ATGATTTGGGCATAATGGGCC
*
87251149 ATATGCATAT
1 ATATGAATAT
87251159 ATGTAGACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 1 0.03
28 21 0.64
29 10 0.30
30 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCATAATGGGCC
Found at i:87256081 original size:40 final size:40
Alignment explanation
Indices: 87256020--87256183 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
87256010 TGGATGATAA
* *
87256020 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGATAAGTCCCGAAGGCATTTGCGCGAGTGACTA-TAT
* * *
87256060 CTGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGATAAGTCCCGAAGGCATTTGCGCGAGTGACTATAT
* * *
87256100 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGATAAGTCCCGAAGGCATTTGCGCGAGTGACTATAT
* * * * *
87256140 CCGGGCTATGTCCCGAAGGTATTCGAGCGAGT-AGCTATAT
1 CCGGGATAAGTCCCGAAGGCATTTGCGCGAGTGA-CTATAT
87256180 CCGG
1 CCGG
87256184 TTCAATCCCG
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGATAAGTCCCGAAGGCATTTGCGCGAGTGACTATAT
Found at i:87256153 original size:80 final size:80
Alignment explanation
Indices: 87256020--87256183 Score: 215
Period size: 80 Copynumber: 2.0 Consensus size: 80
87256010 TGGATGATAA
* * *
87256020 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGATAAGTCCCGAAGGCATTCG
*
87256085 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* * * * *
87256100 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGTATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGATAAGTCCCGAAGGCATTC
87256164 GAGCGAGTAGCTATAT
65 GAGCGAGTAGCTATAT
87256180 CCGG
1 CCGG
87256184 TTCAATCCCG
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.04
80 70 0.96
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGATAAGTCCCGAAGGCATTCG
AGCGAGTAGCTATAT
Found at i:87256860 original size:49 final size:49
Alignment explanation
Indices: 87256805--87256903 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
87256795 GCAATGATTG
87256805 GCCATTGGAATGGTTAATCACGATCATACTTTGTGCTATATATGCTAAA
1 GCCATTGGAATGGTTAATCACGATCATACTTTGTGCTATATATGCTAAA
87256854 GCCATTGGAATGGTTAATCACGATCATACTTTGTGCTATATATGCTAAA
1 GCCATTGGAATGGTTAATCACGATCATACTTTGTGCTATATATGCTAAA
87256903 G
1 G
87256904 GGTTAGTTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (49 bp):
GCCATTGGAATGGTTAATCACGATCATACTTTGTGCTATATATGCTAAA
Found at i:87258869 original size:55 final size:55
Alignment explanation
Indices: 87258805--87258914 Score: 193
Period size: 55 Copynumber: 2.0 Consensus size: 55
87258795 GTCCATCTTC
* *
87258805 TTCATTAGGATGGAATTTCAAAGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
1 TTCATTAGGACGAAATTTCAAAGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
*
87258860 TTCATTAGGACGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
1 TTCATTAGGACGAAATTTCAAAGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
87258915 CAAACTCCAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (55 bp):
TTCATTAGGACGAAATTTCAAAGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
Found at i:87259761 original size:55 final size:53
Alignment explanation
Indices: 87259674--87259928 Score: 261
Period size: 55 Copynumber: 4.8 Consensus size: 53
87259664 ATTAGGGTTT
* *
87259674 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
87259729 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
87259784 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
87259837 AAGGCTACCATGGAAGACCATGTCAAGACATGGCAGTGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * *
87259886 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
87259929 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 41 0.24
54 11 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:87259880 original size:108 final size:110
Alignment explanation
Indices: 87259684--87259930 Score: 307
Period size: 108 Copynumber: 2.3 Consensus size: 110
87259674 AAGGATACCG
* *
87259684 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGGAAGACCA
*
87259749 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTCCCA
* **
87259794 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGGAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGGAAGACC
* * * *
87259856 ATGTCAAGACATGGCAGTGGTAAGTTTC-AAAAGG---A--TACCA
65 ATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTCCCA
* *
87259896 TGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
87259931 ACCCGTGTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
102 31 0.26
103 2 0.02
104 1 0.01
107 8 0.07
108 47 0.39
109 7 0.06
110 24 0.20
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGGAAGACCA
TGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:87265606 original size:18 final size:18
Alignment explanation
Indices: 87265583--87265624 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
87265573 AAGTGTTTTT
*
87265583 GAAAGTATCCTCATGGAA
1 GAAAGTATCCCCATGGAA
*
87265601 GAAAGTATCCCCGTGGAA
1 GAAAGTATCCCCATGGAA
87265619 GAAAGT
1 GAAAGT
87265625 TCTCAGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (18 bp):
GAAAGTATCCCCATGGAA
Found at i:87267325 original size:55 final size:54
Alignment explanation
Indices: 87267238--87267492 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
87267228 ATTATGGTTT
* *
87267238 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
87267293 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
87267348 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
87267401 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
87267450 AAGGATACCATGTAATACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
87267493 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:87267444 original size:108 final size:110
Alignment explanation
Indices: 87267248--87267445 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
87267238 AAGGATACCG
*
87267248 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
87267313 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
87267358 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
87267420 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
87267446 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:87267705 original size:16 final size:16
Alignment explanation
Indices: 87267684--87267714 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87267674 ATAAATTTGA
87267684 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87267700 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87267715 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87271137 original size:40 final size:39
Alignment explanation
Indices: 87271091--87271265 Score: 251
Period size: 40 Copynumber: 4.4 Consensus size: 39
87271081 TGATTAATTT
87271091 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATTC
*
87271131 CTGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATTC
87271171 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TC
* * * * *
87271211 CGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TC
*
87271251 CGGGCTAAGACCCGA
1 CGGGCTAAGTCCCGA
87271266 CGGCCTTGTG
Statistics
Matches: 124, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
39 2 0.02
40 122 0.98
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTC
Found at i:87279509 original size:93 final size:93
Alignment explanation
Indices: 87279397--87279568 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87279387 CGCCCATAAG
* *
87279397 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87279462 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
87279490 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87279555 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
87279569 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:87279565 original size:46 final size:46
Alignment explanation
Indices: 87279390--87279565 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87279380 TGTAACCCGC
* * *
87279390 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
87279436 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
87279486 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
87279529 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
87279566 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:87287086 original size:93 final size:93
Alignment explanation
Indices: 87286974--87287145 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87286964 CGCCCATAAG
* *
87286974 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87287039 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
87287067 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87287132 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
87287146 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:87287142 original size:46 final size:46
Alignment explanation
Indices: 87286967--87287142 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87286957 TGTAACCCGC
* * *
87286967 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
87287013 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
87287063 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
87287106 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
87287143 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:87289679 original size:40 final size:40
Alignment explanation
Indices: 87289635--87289845 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
87289625 TCCCAAAAAT
* * * *
87289635 ATTTGTGCTAGTGATTAATTTCGGGCTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGC
* *
87289675 ATTTGTGCGAGTTACTGATTCCTGGCTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGC
*
87289715 ATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGC
*
87289755 ATTTGTGCGAGTTACT-ATATCCGGGTTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGC
* * * * * *
87289795 ATTTGCGCTAGTGAC-CATATCCGGGCTAAGACCCGACGGC
1 ATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGC
*
87289835 -CTTGTGCGAGT
1 ATTTGTGCGAGT
87289846 GGTTATACCC
Statistics
Matches: 149, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 10 0.07
40 139 0.93
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (40 bp):
ATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGC
Found at i:87289754 original size:80 final size:80
Alignment explanation
Indices: 87289635--87289845 Score: 275
Period size: 80 Copynumber: 2.6 Consensus size: 80
87289625 TCCCAAAAAT
* * *
87289635 ATTTGTGCTAGTGATTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGAT-TCCTG
1 ATTTGTGCGAGTGACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGG
87289699 GCTAAGTCCCGAAGGC
65 GCTAAGTCCCGAAGGC
*
87289715 ATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
1 ATTTGTGCGAGTGACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
*
87289780 TTAAGTCCCGAAGGC
66 CTAAGTCCCGAAGGC
* * * * * * *
87289795 ATTTGCGCTAGTGAC-CATATCCGGGCTAAGACCCGACGGC-CTTGTGCGAGT
1 ATTTGTGCGAGTGACTAAT-TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
87289846 GGTTATACCC
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
79 14 0.12
80 102 0.88
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (80 bp):
ATTTGTGCGAGTGACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
CTAAGTCCCGAAGGC
Done.