Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 284 of 425
Found at i:87976349 original size:20 final size:21
Alignment explanation
Indices: 87976306--87976351 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
87976296 ACTATTTTGT
87976306 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
87976326 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
87976345 TATGGGC
1 TATGGGC
87976352 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:87976444 original size:60 final size:61
Alignment explanation
Indices: 87976379--87976492 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 61
87976369 GACTTGTAAT
*
87976379 AGGGCTACGACCCAGATTGACACTGATATGGGCTAA-GCCCAG-TATACTCTGATACTATAA
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATACTATAA
* * * *
87976439 AGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGAT
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
87976493 TTCTGAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
60 31 0.66
61 14 0.30
62 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (61 bp):
AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATACTATAA
Found at i:87976808 original size:34 final size:34
Alignment explanation
Indices: 87976768--87976836 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
87976758 GTTTTTAGTA
*
87976768 TGTTTTGTTAGCTTAGATATGATATTGTTTTAAC
1 TGTTTTGTTAGCTTAGATATGATATTATTTTAAC
87976802 TGTTTTGTTAGCTTAGATATGATATTATTTTAAC
1 TGTTTTGTTAGCTTAGATATGATATTATTTTAAC
87976836 T
1 T
87976837 ATTTAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.54
Consensus pattern (34 bp):
TGTTTTGTTAGCTTAGATATGATATTATTTTAAC
Found at i:87980470 original size:20 final size:21
Alignment explanation
Indices: 87980427--87980472 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
87980417 ACTGTTTTGT
87980427 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
87980447 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
87980466 TATGGGC
1 TATGGGC
87980473 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:87980573 original size:58 final size:60
Alignment explanation
Indices: 87980500--87980611 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 60
87980490 GACTTGTAAT
*
87980500 AGGGCTACGACCCAGATTGACACTGATATGGGCT-A-GCCCAG-TATACTCTGATACTGTA
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATACTGTA
* * * *
87980558 AGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGAT
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
87980612 TTCTGAATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 29 0.63
59 1 0.02
60 14 0.30
61 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (60 bp):
AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATACTGTA
Found at i:87984244 original size:18 final size:18
Alignment explanation
Indices: 87984221--87984256 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87984211 CGACAACAGG
87984221 ATCCCAATGGCCGACGGC
1 ATCCCAATGGCCGACGGC
*
87984239 ATCCCAATGGCTGACGGC
1 ATCCCAATGGCCGACGGC
87984257 GGTTGGTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14
Consensus pattern (18 bp):
ATCCCAATGGCCGACGGC
Found at i:87984399 original size:37 final size:36
Alignment explanation
Indices: 87984348--87984423 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
87984338 TTCCAAAAAA
*
87984348 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
87984384 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
87984421 TAA
1 TAA
87984424 AGTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:87994840 original size:9 final size:9
Alignment explanation
Indices: 87994815--87994875 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
87994805 TTCATATCCT
*
87994815 TCTCTCAAC
1 TCTCTCAAA
* *
87994824 TCTATCAAT
1 TCTCTCAAA
87994833 TCTCTCAAAA
1 TCTCTC-AAA
87994843 TCTCTCAAA
1 TCTCTCAAA
* *
87994852 CCTTCTCAAG
1 TC-TCTCAAA
*
87994862 TCTCTCAAC
1 TCTCTCAAA
87994871 TCTCT
1 TCTCT
87994876 TGTTTTTAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 27 0.64
10 15 0.36
ACGTcount: A:0.26, C:0.36, G:0.02, T:0.36
Consensus pattern (9 bp):
TCTCTCAAA
Found at i:87999598 original size:21 final size:21
Alignment explanation
Indices: 87999572--87999612 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
87999562 ATTTAAACAC
87999572 TTCAACACA-TTTAGAATATGT
1 TTCAACACACTTT-GAATATGT
*
87999593 TTCAACGCACTTTGAATATG
1 TTCAACACACTTTGAATATG
87999613 ATCATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (21 bp):
TTCAACACACTTTGAATATGT
Found at i:88002879 original size:46 final size:47
Alignment explanation
Indices: 88002829--88003036 Score: 305
Period size: 46 Copynumber: 4.5 Consensus size: 47
88002819 ATAAAATGTG
*
88002829 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAA
* *
88002875 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAA
**
88002921 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAA
* *
88002968 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAAACGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAAATGAA
* *
88003015 TAAAACCATAGTTGAAAGATAC
1 TAAGACCATGGTTGAAAGATAC
88003037 TATGACATCA
Statistics
Matches: 150, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
46 82 0.55
47 68 0.45
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (47 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAA
Found at i:88004682 original size:1 final size:1
Alignment explanation
Indices: 88004676--88004715 Score: 80
Period size: 1 Copynumber: 40.0 Consensus size: 1
88004666 GTTCGTTGCG
88004676 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
88004716 ACAATTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:88005290 original size:34 final size:34
Alignment explanation
Indices: 88005247--88005313 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
88005237 AATAAAATTG
88005247 AATTTGTATAATGTACTGTTGAGTTGATGGGTGA
1 AATTTGTATAATGTACTGTTGAGTTGATGGGTGA
*
88005281 AATTTGTATAATGTACTGTTGAGTTGATTGGTG
1 AATTTGTATAATGTACTGTTGAGTTGATGGGTG
88005314 CAGAACATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.43
Consensus pattern (34 bp):
AATTTGTATAATGTACTGTTGAGTTGATGGGTGA
Found at i:88013331 original size:26 final size:25
Alignment explanation
Indices: 88013302--88013351 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
88013292 CATATAAATT
88013302 TTATATAAAAATATAAAAAGTATTTG
1 TTATATAAAAATATAAAAA-TATTTG
* **
88013328 TTATTTTTAAATATAAAAATATTT
1 TTATATAAAAATATAAAAATATTT
88013352 TAATCATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
TTATATAAAAATATAAAAATATTTG
Found at i:88015020 original size:12 final size:13
Alignment explanation
Indices: 88014999--88015027 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
88014989 ATATATGGGA
88014999 GGGGTGGGGGGGG
1 GGGGTGGGGGGGG
88015012 GGGGTGGGGGGGG
1 GGGGTGGGGGGGG
88015025 GGG
1 GGG
88015028 CGGTCCTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.93, T:0.07
Consensus pattern (13 bp):
GGGGTGGGGGGGG
Found at i:88015252 original size:26 final size:26
Alignment explanation
Indices: 88015201--88015258 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
88015191 TTTACCAATT
* * *
88015201 ATATTTTTTTTATTTTAGTTATTTAA
1 ATATTTTTGTTATTTTAGATAATTAA
88015227 ATATTATTTGTTATTTTA-ATAATTAA
1 ATATT-TTTGTTATTTTAGATAATTAA
88015253 AT-TTTT
1 ATATTTT
88015259 AAAATTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.07
25 2 0.07
26 13 0.46
27 11 0.39
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (26 bp):
ATATTTTTGTTATTTTAGATAATTAA
Found at i:88015264 original size:14 final size:16
Alignment explanation
Indices: 88015238--88015276 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
88015228 TATTATTTGT
88015238 TATTTTAATAATTAAA
1 TATTTTAATAATTAAA
88015254 T-TTTTAA-AATTAAA
1 TATTTTAATAATTAAA
88015268 TATTTTAAT
1 TATTTTAAT
88015277 CACTCTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 12 0.57
16 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTTTAATAATTAAA
Found at i:88023346 original size:142 final size:142
Alignment explanation
Indices: 88023090--88023370 Score: 517
Period size: 142 Copynumber: 2.0 Consensus size: 142
88023080 TGAGTTCATT
*
88023090 CTTGCTTCCATGTGGTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTAT
1 CTTGCTTCCATGTGGTGTAATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTAT
*
88023155 AAAGGATGACTAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
66 AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
88023220 TGTATGTCTGAG
131 TGTATGTCTGAG
* *
88023232 CTTGCTTCCATGTGTTGTAATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
1 CTTGCTTCCATGTGGTGTAATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTAT
*
88023297 AAAGGATGACCAGTGTTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
66 AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
88023362 TGTATGTCT
131 TGTATGTCT
88023371 AAGAAAAAAA
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 134 1.00
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.44
Consensus pattern (142 bp):
CTTGCTTCCATGTGGTGTAATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTAT
AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
TGTATGTCTGAG
Found at i:88034900 original size:29 final size:31
Alignment explanation
Indices: 88034851--88034912 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
88034841 AATGTGTATC
* *
88034851 TATTTATTTGATGGATGAAAT-T-GAGATAT
1 TATTTATTTAATAGATGAAATGTGGAGATAT
88034880 TATTTATTGTAATAGAT-AAATGTGGAGATAT
1 TATTTATT-TAATAGATGAAATGTGGAGATAT
88034911 TA
1 TA
88034913 AATTTAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.43
30 7 0.25
31 9 0.32
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAT
Found at i:88038331 original size:50 final size:50
Alignment explanation
Indices: 88038157--88038484 Score: 352
Period size: 50 Copynumber: 6.5 Consensus size: 50
88038147 TGAGAACACA
* * * * *
88038157 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG--TTAGGTCACG
* *** * * * * ***
88038209 TGTGTAGTACTAAGTGCAGGCTGCTATACGTACCCGAAAACTTCTATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-ATAGTTAGGTCACG
* *
88038260 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * *
88038310 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* *
88038360 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTAACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * ** *
88038410 TGTGTAGTACTAAATGCAGGCTACTACATGTATCGGATAGTT-GGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
88038459 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
88038485 TGCATACCAG
Statistics
Matches: 228, Mismatches: 47, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
49 29 0.13
50 134 0.59
51 36 0.16
52 28 0.12
53 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
Found at i:88038397 original size:100 final size:99
Alignment explanation
Indices: 88038155--88038484 Score: 419
Period size: 100 Copynumber: 3.3 Consensus size: 99
88038145 TGTGAGAACA
* * * *
88038155 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACT
* * * * ** *
88038220 AAGTGCAGGCTGCTATACGTACCCGAAA-ACTTCTATCA
64 AAGTGCAGGCTACTACATGTA-CC-AAATAGTT-GGTCG
* *
88038258 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
*
88038323 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCG
66 GTGCAGGCTACTACATGTACCAAATAGTT-GGTCG
*
88038358 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTAACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
* * ** *
88038423 ATGCAGGCTACTACATGTATCGGATAGTTGGTTG
66 GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
88038457 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
88038485 TGCATACCAG
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
99 35 0.17
100 93 0.46
101 38 0.19
103 36 0.18
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (99 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
Found at i:88038717 original size:16 final size:15
Alignment explanation
Indices: 88038696--88038725 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
88038686 GAATGGAGCA
88038696 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
88038712 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
88038726 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:88047419 original size:28 final size:28
Alignment explanation
Indices: 88047381--88047487 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
88047371 GAATCATTCG
* *
88047381 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
88047409 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
88047437 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
88047465 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
88047488 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:88049431 original size:37 final size:36
Alignment explanation
Indices: 88049381--88049462 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 36
88049371 TACGAAGTCT
88049381 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
88049417 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
88049454 TCACCCGGA
1 T-ACCCGGA
88049463 ACATTATTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 1 0.02
37 43 0.98
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:88049604 original size:49 final size:49
Alignment explanation
Indices: 88049537--88049981 Score: 791
Period size: 49 Copynumber: 9.1 Consensus size: 49
88049527 TTTACCACAT
* *
88049537 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * * *
88049586 ATATATATACATTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
88049635 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
88049684 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
88049733 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
88049782 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
88049831 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
88049880 ATATGTATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
88049929 ATATGTATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
88049978 ATAT
1 ATAT
88049982 ATTATTATGT
Statistics
Matches: 386, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 386 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (49 bp):
ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:88055478 original size:138 final size:138
Alignment explanation
Indices: 88055278--88055553 Score: 543
Period size: 138 Copynumber: 2.0 Consensus size: 138
88055268 ATTAGTCCCT
*
88055278 GGGCTTGCTAGATTAAGCTGCAACGATCTCAAAAACAAAGAAATCAATAAAAACAAGACAAAAAT
1 GGGCTAGCTAGATTAAGCTGCAACGATCTCAAAAACAAAGAAATCAATAAAAACAAGACAAAAAT
88055343 CACGTACCAATTTAACAATGAAGTAACCAAAACAAGGAACCCTAAAAGTGGTTTCTTCTTCCTTC
66 CACGTACCAATTTAACAATGAAGTAACCAAAACAAGGAACCCTAAAAGTGGTTTCTTCTTCCTTC
88055408 AATTTTGG
131 AATTTTGG
88055416 GGGCTAGCTAGATTAAGCTGCAACGATCTCAAAAACAAAGAAATCAATAAAAACAAGACAAAAAT
1 GGGCTAGCTAGATTAAGCTGCAACGATCTCAAAAACAAAGAAATCAATAAAAACAAGACAAAAAT
88055481 CACGTACCAATTTAACAATGAAGTAACCAAAACAAGGAACCCTAAAAGTGGTTTCTTCTTCCTTC
66 CACGTACCAATTTAACAATGAAGTAACCAAAACAAGGAACCCTAAAAGTGGTTTCTTCTTCCTTC
88055546 AATTTTGG
131 AATTTTGG
88055554 TGGATGAATG
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (138 bp):
GGGCTAGCTAGATTAAGCTGCAACGATCTCAAAAACAAAGAAATCAATAAAAACAAGACAAAAAT
CACGTACCAATTTAACAATGAAGTAACCAAAACAAGGAACCCTAAAAGTGGTTTCTTCTTCCTTC
AATTTTGG
Found at i:88057712 original size:12 final size:12
Alignment explanation
Indices: 88057697--88057721 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
88057687 TGGGCGATAC
88057697 CATGGACTTAGG
1 CATGGACTTAGG
88057709 CATGGACTTAGG
1 CATGGACTTAGG
88057721 C
1 C
88057722 CGTTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (12 bp):
CATGGACTTAGG
Found at i:88058058 original size:27 final size:27
Alignment explanation
Indices: 88057995--88058066 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
88057985 AATGTACCTG
*
88057995 ACCCTTATGTGATAGAATGACAATTTT
1 ACCCTTATGTGATAAAATGACAATTTT
**
88058022 ATTCTTATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGACAATTTT
* *
88058049 GCCCTAATGTGATAAAAT
1 ACCCTTATGTGATAAAAT
88058067 AACCGAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACAATTTT
Found at i:88058091 original size:27 final size:27
Alignment explanation
Indices: 88058061--88058177 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
88058051 CCTAATGTGA
*
88058061 TAAAATAACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
88058088 TAAAATGACCTAAATATCCCT-ATAGGG
1 TAAAATGACCGAAATA-CCCTCATAGGG
* * *
88058115 TAGAATGACCGAAATGCCC-CTGTAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
* * ** *
88058142 TAAAATGACTGTAATACCCTGGTAAGG
1 TAAAATGACCGAAATACCCTCATAGGG
88058169 TAAAATGAC
1 TAAAATGAC
88058178 AGATTTGTTC
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
26 3 0.04
27 67 0.91
28 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:88058255 original size:23 final size:23
Alignment explanation
Indices: 88058212--88058261 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
88058202 CTATATTTAA
88058212 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
88058235 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
88058258 GCAT
1 GCAT
88058262 TGCATGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:88058543 original size:18 final size:18
Alignment explanation
Indices: 88058520--88058577 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
88058510 TCTACTTGTA
*
88058520 TACTGCACTAATTACTGT
1 TACTGCACTGATTACTGT
* *
88058538 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
*
88058556 TACTGCACTGATTACTAT
1 TACTGCACTGATTACTGT
88058574 TACT
1 TACT
88058578 AAAGTGGGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:88058607 original size:34 final size:34
Alignment explanation
Indices: 88058568--88058699 Score: 176
Period size: 34 Copynumber: 3.9 Consensus size: 34
88058558 CTGCACTGAT
88058568 TACTATTACT-AAAGTGGGCTAAAGCCCAGACTGC
1 TACTATTACTGAAA-TGGGCTAAAGCCCAGACTGC
*
88058602 TACTATTACTGAAATGGGCTAAAACCCAGACTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* * *
88058636 TACTGTTACTGAAATGGGCTAAGGCCCATACTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* * * *
88058670 TACTGTTACTGATATGGGCTTAAGCTCAGA
1 TACTATTACTGAAATGGGCTAAAGCCCAGA
88058700 ATATATTCGC
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 84 0.97
35 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
Found at i:88064440 original size:39 final size:40
Alignment explanation
Indices: 88064352--88064473 Score: 149
Period size: 39 Copynumber: 3.1 Consensus size: 40
88064342 GCCCGGTTAC
*
88064352 AGTAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTT
1 AGTAACTCGCACGAATGCCTTC-GGATCTTAATCCGGATTT
* * * *
88064392 AGTAGCTCGCTCGAAAGCCTTCGGATCTTAGTCC-GATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAATCCGGATTT
* * *
88064431 AGTAACTCGCACGTATGCCGTCGGATCTTATTCCGGATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAATCCGGATTT
88064471 AGT
1 AGT
88064474 CACTTAGCAC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 36 0.52
40 33 0.48
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (40 bp):
AGTAACTCGCACGAATGCCTTCGGATCTTAATCCGGATTT
Found at i:88064501 original size:79 final size:79
Alignment explanation
Indices: 88064323--88064505 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 79
88064313 GCTACACATT
* * *
88064323 CAAATGCCTTCGGGACATAGCCCGGTTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGATTACAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGG
* *
88064388 ATTTAGTAGCTCGCT
65 ATTTAGTAGCTAGCA
* * * **
88064403 CGAAAGCCTTC-GGATCTTAGTCCGATT-TAGTAACTCGCACGTATGCCGTC-GGATCTTATTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGATTACAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCC
88064465 GGATTTAGTCA-CTTAGCA
63 GGATTTAGT-AGC-TAGCA
88064483 CAAAGCCTTCGGGACTTAGCCCG
1 CAAAGCCTTCGGGACTTAGCCCG
88064506 GATATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.03
79 56 0.65
80 24 0.28
81 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGATTACAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGA
TTTAGTAGCTAGCA
Found at i:88064507 original size:40 final size:40
Alignment explanation
Indices: 88064328--88064508 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
88064318 ACATTCAAAT
* * *
88064328 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAAA
* * *
88064368 GCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
* * *
88064408 GCCTTC-GGATCTTAGTCC-GATTTAGTAACTCGCACGTAT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAAA
* ** * *
88064447 GCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACGAAA
88064487 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
88064509 ATCATTCGAA
Statistics
Matches: 115, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 36 0.31
40 69 0.60
41 10 0.09
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
Found at i:88090473 original size:13 final size:13
Alignment explanation
Indices: 88090450--88090483 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
88090440 AAACATATTA
88090450 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
88090464 TAAAATTTTGTGT
1 TAAAATTTTGTGT
88090477 TAGAAAT
1 TA-AAAT
88090484 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:88091760 original size:40 final size:40
Alignment explanation
Indices: 88091712--88091877 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
88091702 GGACTAAGAT
88091712 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
88091752 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
88091792 CCGAAGGCATTTGCGCGAGTTACTATATCCGGGATAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * * *
88091832 CCGAAGGCATTTGGGCGAGTTGCTATATCC-GGTTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
88091871 CCGAAGG
1 CCGAAGG
88091878 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 14 0.12
40 104 0.88
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:88104408 original size:27 final size:27
Alignment explanation
Indices: 88104348--88104409 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
88104338 GGGCAAAATG
* *
88104348 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
*
88104375 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAGGGGTATTTCA
88104402 GTAATTTT
1 GTAATTTT
88104410 GCAAACCAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTCA
Found at i:88104419 original size:27 final size:27
Alignment explanation
Indices: 88104389--88104491 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
88104379 TTTTACCCTA
*
88104389 CAGGGGTATTTTAGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
*
88104416 CAGGGATATTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* * *
88104443 CAGGGGTATTTTGGTAGTTTTACAACC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
88104470 CAGGGGTATTTTGGTAATTTTG
1 CAGGGGTATTTTGGTAATTTTG
88104492 TAAATCGAGG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTGCAAAC
Found at i:88104420 original size:54 final size:54
Alignment explanation
Indices: 88104362--88104490 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
88104352 TTCTACCTTA
** ** *
88104362 CAGGGGTATTTCAGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTT-CCAAACCAGGGGTATTTTAGTAATTTTACAAAC
* * * * *
88104416 CAGGGATATTTTGGTAATTTTGCAAACCAGGGGTATTTTGGTAGTTTTACAACC
1 CAGGGGTATTTTGGTAATTTTCCAAACCAGGGGTATTTTAGTAATTTTACAAAC
88104470 CAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
88104491 GTAAATCGAG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.03
54 61 0.97
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTCCAAACCAGGGGTATTTTAGTAATTTTACAAAC
Found at i:88104503 original size:27 final size:27
Alignment explanation
Indices: 88104473--88104625 Score: 101
Period size: 27 Copynumber: 5.7 Consensus size: 27
88104463 TACAACCCAG
*
88104473 GGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTGTAAATCGA
** * *
88104500 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTGTAAATCGA
*** **
88104527 GGGTAAAACGGTAATTTTAAAAATCGA
1 GGGTAATTTGGTAATTTTGTAAATCGA
* *** * *
88104554 GAGTAAAACGATAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTGTAAATCGA
*** *
88104581 GGGTAAAACGGTAATTCTGTAAATCG-
1 GGGTAATTTGGTAATTTTGTAAATCGA
*
88104607 GGAGTACTTTGGTAATTTT
1 GG-GTAATTTGGTAATTTT
88104626 ACAAGTCGAG
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 2 0.02
27 103 0.98
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.33
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTGTAAATCGA
Found at i:88104512 original size:54 final size:54
Alignment explanation
Indices: 88104406--88104512 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
88104396 ATTTTAGTAA
* ***
88104406 TTTTGCAAACCAGGGATATTTTGGTAATTTTGCAAACCAGGGGTATTTTGGTAG
1 TTTTACAAACCAGGGATATTTTGGTAATTTTGCAAACCAGGGGTAAAATGGTAG
* * * *
88104460 TTTTACAACCCAGGGGTATTTTGGTAATTTTGTAAATC-GAGGGTAAAATGGTA
1 TTTTACAAACCAGGGATATTTTGGTAATTTTGCAAACCAG-GGGTAAAATGGTA
88104513 ATTCTATAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.36
Consensus pattern (54 bp):
TTTTACAAACCAGGGATATTTTGGTAATTTTGCAAACCAGGGGTAAAATGGTAG
Found at i:88104605 original size:54 final size:54
Alignment explanation
Indices: 88104482--88104612 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
88104472 GGGGTATTTT
* * *
88104482 GGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGAGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
** *
88104536 GGTAATTTTAAAAATCGAGAGTAAAACGATAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGAGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
* *
88104590 GGTAATTCTGTAAATCGGGAGTA
1 GGTAATTTTGTAAATCGAGAGTA
88104613 CTTTGGTAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTTTGTAAATCGAGAGTAAAACGATAATTCTATAAATCGAGGGTAAAAC
Found at i:88107615 original size:40 final size:40
Alignment explanation
Indices: 88107536--88107701 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
88107526 CGGATGATAA
* * **
88107536 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
88107576 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
88107616 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
88107656 CCGGGCTAAGACCCGAAGGCTTTTGTGCGAGTTG-T-TAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
88107694 CC-GGCTAA
1 CCGGGCTAA
88107702 ATCCTGAAGA
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
37 6 0.06
38 5 0.05
39 3 0.03
40 92 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:88107979 original size:22 final size:22
Alignment explanation
Indices: 88107939--88107980 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
88107929 GAATGTGCAT
*
88107939 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
88107961 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
88107981 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:88111214 original size:16 final size:17
Alignment explanation
Indices: 88111193--88111226 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88111183 TCACATTGAA
88111193 GTGTTTT-TTGAAAACC
1 GTGTTTTATTGAAAACC
88111209 GTGTTTTCATTGAAAACC
1 GTGTTTT-ATTGAAAACC
88111227 CTTCTTGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (17 bp):
GTGTTTTATTGAAAACC
Found at i:88112570 original size:46 final size:46
Alignment explanation
Indices: 88112517--88112681 Score: 285
Period size: 46 Copynumber: 3.6 Consensus size: 46
88112507 ACATATCTCA
* *
88112517 CATTAGCCATTTGGCTTTACCACATATCCATCTAATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACGTTTCG
*
88112563 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACGTTTCG
* *
88112609 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACGTTTCG
88112655 CATTAGCCATTCGGCTTTACCACATAT
1 CATTAGCCATTCGGCTTTACCACATAT
88112682 ATACACTTCC
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 114 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACGTTTCG
Found at i:88112726 original size:47 final size:47
Alignment explanation
Indices: 88112655--88112800 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
88112645 ACACATTTCG
* * * * * *
88112655 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
88112702 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
88112749 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
88112796 CATTG
1 CATTG
88112801 AAATCCTAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 88 0.99
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:88116659 original size:29 final size:29
Alignment explanation
Indices: 88116626--88116695 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
88116616 AAAGAACTCA
*
88116626 CACACATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTGCCTCAACTACCAATCTCG
** *
88116655 CACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTGCCTCAACTACCAATCTCG
88116684 CACACATAGTGC
1 CACACATAGTGC
88116696 TCGGTTGGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.14, T:0.23
Consensus pattern (29 bp):
CACACATAGTGCCTCAACTACCAATCTCG
Found at i:88116799 original size:40 final size:40
Alignment explanation
Indices: 88116755--88116928 Score: 314
Period size: 40 Copynumber: 4.4 Consensus size: 40
88116745 CCTTCGAGGT
*
88116755 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
88116795 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
88116835 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
88116874 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
88116914 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
88116929 ATAACTCTCA
Statistics
Matches: 130, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
39 39 0.30
40 91 0.70
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:88116894 original size:79 final size:80
Alignment explanation
Indices: 88116755--88116925 Score: 317
Period size: 79 Copynumber: 2.1 Consensus size: 80
88116745 CCTTCGAGGT
* *
88116755 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
88116820 AATGCTCTTCGGGAC
66 AATGCTCTTCGGGAC
88116835 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
88116899 AATGCTCTTCGGGAC
66 AATGCTCTTCGGGAC
88116914 TTAGCCCGGATA
1 TTAGCCCGGATA
88116926 TATATAACTC
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
79 53 0.60
80 36 0.40
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
AATGCTCTTCGGGAC
Found at i:88118478 original size:46 final size:46
Alignment explanation
Indices: 88118410--88118591 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
88118400 TATATATACA
* * * *
88118410 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
88118456 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
88118502 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
88118548 CATCTCATACACATTTCGCATTAG-CATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
88118592 ATACACTTCC
Statistics
Matches: 128, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 19 0.15
46 109 0.85
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:88118621 original size:92 final size:91
Alignment explanation
Indices: 88118425--88118637 Score: 270
Period size: 92 Copynumber: 2.3 Consensus size: 91
88118415 CATACATATC
* *
88118425 TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCT
1 TCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
* *
88118490 TTACCTCATATCCATCTCATACACGTT
66 TTACCACATAT-CATCACATACACGTT
* *
88118517 TCGCATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCGCATTAG-CATTCGGCT
1 TCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
* *
88118581 TTACCACATAT-ATACACTTCCACGTT
66 TTACCACATATCAT-CACATACACGTT
* * *
88118607 CATCACATTGGCCATTC-GCCTTATCACATAT
1 --TCACATTAGCCATTCGGCTTTACCACATAT
88118638 ATGCATGTTC
Statistics
Matches: 105, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
89 2 0.02
90 9 0.09
91 30 0.29
92 64 0.61
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.34
Consensus pattern (91 bp):
TCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
TTACCACATATCATCACATACACGTT
Found at i:88118669 original size:39 final size:39
Alignment explanation
Indices: 88118619--88118746 Score: 166
Period size: 39 Copynumber: 3.1 Consensus size: 39
88118609 TCACATTGGC
*
88118619 CATTCGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCTTATCACATATATGCATGTTCACATTCATCA
88118658 CATTGGCCTTATCACATATATGCATGTTCACATTCATCACA
1 CATTGGCCTTATCACATATATGCATGTTCACATTCAT--CA
*
88118699 TTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 -----CATT-GGCCTTATCACATATATGCATGTTCACATTCATCA
88118744 CAT
1 CAT
88118747 AAAATCCTAA
Statistics
Matches: 79, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
39 36 0.46
40 3 0.04
41 2 0.03
45 2 0.03
46 4 0.05
47 32 0.41
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (39 bp):
CATTGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:88118716 original size:47 final size:46
Alignment explanation
Indices: 88118658--88118746 Score: 160
Period size: 47 Copynumber: 1.9 Consensus size: 46
88118648 ACATTCATCA
*
88118658 CATTGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CATTGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGC
88118704 CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACAT
1 CATT-GGCCTTATCACACATATGCATGTTCACATTCATCACAT
88118747 AAAATCCTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
46 4 0.10
47 37 0.90
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (46 bp):
CATTGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGC
Found at i:88121385 original size:19 final size:19
Alignment explanation
Indices: 88121350--88121391 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
88121340 TGTCACAAAG
*
88121350 TTTATGTCCATTTAAAATA
1 TTTATGTCCATTTAAAACA
*
88121369 TTTATTTCC-TTTGAAAACA
1 TTTATGTCCATTT-AAAACA
88121388 TTTA
1 TTTA
88121392 CGTTGCGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (19 bp):
TTTATGTCCATTTAAAACA
Found at i:88121871 original size:60 final size:60
Alignment explanation
Indices: 88121783--88121919 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
88121773 CAAAGTTAAC
* * *
88121783 TGGGCCTTAGCCCATTTCAATATTAATCTGGGCCATAGC-CCCTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCTCCATTACAAG--TCGAGA-TATAT
* * *
88121844 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCTCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCTCCATTACAAGTCGAGATATAT
*
88121904 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
88121920 TGACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 50 0.76
61 14 0.21
62 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCTCCATTACAAGTCGAGATATAT
Found at i:88126106 original size:54 final size:54
Alignment explanation
Indices: 88126016--88126368 Score: 330
Period size: 54 Copynumber: 6.5 Consensus size: 54
88126006 GCATGAAGTT
* * * * *
88126016 TGCTTACAAAATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTC
1 TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* * *
88126070 TGCTTACAAGATTTTTAA-AATCTTACAGTCCGCTGATTTATGATCAGGATCTTC
1 TGCTTACAAGA-TTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* * * * * * *
88126124 TACTTACAAGATTTTAAGAATTTTACAATCTGTTGATTTACGATCATGACCTTT
1 TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* ** * *
88126178 TGCTTAGAAGATTTTAAGAATCTTATGGTTCGTTGATTTACGATCACGACCTTC
1 TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* * * * * * *
88126232 TACTGAAAAGATTTTAGGAATCTTACAATCTGCTGATTTATGATCACGACCTTC
1 TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* * * *** * * *
88126286 TGCTTATAAGATTTTAAGAATCTCACGGTCTATTGAATTATGATCACGACATTC
1 TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
* * * *
88126340 TACGTATAAGATTTTTAGAATCTTACAGT
1 TGCTTACAAGATTTTAAGAATCTTACAGT
88126369 TTGTTGATTT
Statistics
Matches: 243, Mismatches: 54, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
53 6 0.02
54 231 0.95
55 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (54 bp):
TGCTTACAAGATTTTAAGAATCTTACAGTCCGCTGATTTACGATCACGACCTTC
Found at i:88126215 original size:108 final size:107
Alignment explanation
Indices: 88126049--88126379 Score: 378
Period size: 108 Copynumber: 3.1 Consensus size: 107
88126039 TACGGTCCAC
* * * *
88126049 TGATTTACGATCACAACCTTCTGCTTACAAGATTTTTAA-AATCTTACAGTCCGCTGATTTATGA
1 TGATTTACGATCACGACCTTCTGCTTACAAGA-TTTTAAGAATCTTACGGTTCGTTGATTTATGA
* * *
88126113 TCAGGATCTTCTACTTACAAGATTTTAAGAATTTTACAATCTGT
65 TCACGA-CTTCTACTTAAAAGATTTTAAGAATCTTACAATCTGT
* * * * *
88126157 TGATTTACGATCATGACCTTTTGCTTAGAAGATTTTAAGAATCTTATGGTTCGTTGATTTACGAT
1 TGATTTACGATCACGACCTTCTGCTTACAAGATTTTAAGAATCTTACGGTTCGTTGATTTATGAT
* * *
88126222 CACGACCTTCTACTGAAAAGATTTTAGGAATCTTACAATCTGC
66 CACGA-CTTCTACTTAAAAGATTTTAAGAATCTTACAATCTGT
* * * * *
88126265 TGATTTATGATCACGACCTTCTGCTTATAAGATTTTAAGAATCTCACGG-TCTATTGAATTATGA
1 TGATTTACGATCACGACCTTCTGCTTACAAGATTTTAAGAATCTTACGGTTC-GTTGATTTATGA
* * * * *
88126329 TCACGACATTCTACGTATAAGATTTTTAGAATCTTACAGTTTGT
65 TCACGAC-TTCTACTTAAAAGATTTTAAGAATCTTACAATCTGT
88126373 TGATTTA
1 TGATTTA
88126380 AGATTCTCAA
Statistics
Matches: 187, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
107 9 0.05
108 178 0.95
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (107 bp):
TGATTTACGATCACGACCTTCTGCTTACAAGATTTTAAGAATCTTACGGTTCGTTGATTTATGAT
CACGACTTCTACTTAAAAGATTTTAAGAATCTTACAATCTGT
Found at i:88126299 original size:162 final size:162
Alignment explanation
Indices: 88126014--88126306 Score: 408
Period size: 162 Copynumber: 1.8 Consensus size: 162
88126004 AAGCATGAAG
* * *
88126014 TTTGCTTACAAAATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTCTGCTTACAA
1 TTTGCTTACAAAATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTCTACTGAAAA
* * *
88126079 GATTTTTAAAATCTTACAGTCCGCTGATTTATGATCAGGATCTTCTACTTACAAGATTTTAAGAA
66 GATTTTTAAAATCTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGAA
88126144 TTTTACAATCTGTTGATTTACGATCATGACCT
131 TTTTACAATCTGTTGATTTACGATCATGACCT
* * * * * ** *
88126176 TTTGCTTAGAAGATTTTAAGAATCTTATGGTTCGTTGATTTACGATCACGACCTTCTACTGAAAA
1 TTTGCTTACAAAATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTCTACTGAAAA
* * * *
88126241 GA-TTTTAGGAATCTTACAATCTGCTGATTTATGATCACGACCTTCTGCTTATAAGATTTTAAGA
66 GATTTTTA-AAATCTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGA
88126305 AT
130 AT
88126307 CTCACGGTCT
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
161 5 0.04
162 107 0.96
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (162 bp):
TTTGCTTACAAAATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTCTACTGAAAA
GATTTTTAAAATCTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGAA
TTTTACAATCTGTTGATTTACGATCATGACCT
Found at i:88126353 original size:162 final size:162
Alignment explanation
Indices: 88126026--88126379 Score: 404
Period size: 162 Copynumber: 2.2 Consensus size: 162
88126016 TGCTTACAAA
* * ** * * *
88126026 ATTTTAAGAATATTACGGTCCACTGATTTACGATCACAACCTTCTGCTTACAAGATTTTTAAAAT
1 ATTTTAAGAATCTTACGGTTCGTTGATTTACGATCACAACCTTCTACTGAAAAGATTTTTAAAAT
* * * * * *
88126091 CTTACAGTCCGCTGATTTATGATCAGGATCTTCTACTTACAAGATTTTAAGAATTTTACAATCTG
66 CTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGAATCTCACAATCTA
* * * * * *
88126156 TTGATTTACGATCATGACCTTTTGCTTAGAAG
131 TTGAATTACGATCACGACATTCTACGTAGAAG
* * *
88126188 ATTTTAAGAATCTTATGGTTCGTTGATTTACGATCACGACCTTCTACTGAAAAGA-TTTTAGGAA
1 ATTTTAAGAATCTTACGGTTCGTTGATTTACGATCACAACCTTCTACTGAAAAGATTTTTA-AAA
* * * **
88126252 TCTTACAATCTGCTGATTTATGATCACGACCTTCTGCTTATAAGATTTTAAGAATCTCACGGTCT
65 TCTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGAATCTCACAATCT
* *
88126317 ATTGAATTATGATCACGACATTCTACGTATAAG
130 ATTGAATTACGATCACGACATTCTACGTAGAAG
* * *
88126350 ATTTTTAGAATCTTACAGTTTGTTGATTTA
1 ATTTTAAGAATCTTACGGTTCGTTGATTTA
88126380 AGATTCTCAA
Statistics
Matches: 158, Mismatches: 33, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
161 5 0.03
162 153 0.97
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (162 bp):
ATTTTAAGAATCTTACGGTTCGTTGATTTACGATCACAACCTTCTACTGAAAAGATTTTTAAAAT
CTTACAATCCGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTAAGAATCTCACAATCTA
TTGAATTACGATCACGACATTCTACGTAGAAG
Found at i:88126578 original size:54 final size:54
Alignment explanation
Indices: 88126468--88126630 Score: 175
Period size: 54 Copynumber: 3.0 Consensus size: 54
88126458 TTTTCATGTC
* * *** * *
88126468 TCTTATGGTTTGTCGATTTACAATCATAACCTCATACTTACAATATTTTTAAAA
1 TCTTATGGTTTGCCGATTTACGATTGCAACCTTATACTTACAAGATTTTTAAAA
**
88126522 TCTTATGGTTTGCCGATTTACGATTGCAACCTTATACTTACAAGATTTTTTGAA
1 TCTTATGGTTTGCCGATTTACGATTGCAACCTTATACTTACAAGATTTTTAAAA
* * * * * *
88126576 TCTT-TCGGCTCGCCGATTTAAGATTGCAGCCCTATACTTACAGGATTTTTAAAA
1 TCTTAT-GGTTTGCCGATTTACGATTGCAACCTTATACTTACAAGATTTTTAAAA
88126630 T
1 T
88126631 ATTGTAGTTG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 90 0.99
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (54 bp):
TCTTATGGTTTGCCGATTTACGATTGCAACCTTATACTTACAAGATTTTTAAAA
Found at i:88126759 original size:14 final size:14
Alignment explanation
Indices: 88126740--88126768 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
88126730 TTACAGTATC
88126740 TTTACAATACAATT
1 TTTACAATACAATT
88126754 TTTACAATACAATT
1 TTTACAATACAATT
88126768 T
1 T
88126769 GCAGTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTACAATACAATT
Found at i:88126762 original size:37 final size:36
Alignment explanation
Indices: 88126716--88126788 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
88126706 ATTTACGTAG
* *
88126716 TTTTTCAATATAGTTTACAGTATCTTT-ACAATACAA
1 TTTTTCAATACAATTTACAGTAT-TTTCACAATACAA
*
88126752 TTTTTACAATACAATTTGCAGTATTTTCACAATACAA
1 TTTTT-CAATACAATTTACAGTATTTTCACAATACAA
88126789 CTTGCAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.25
37 24 0.75
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.42
Consensus pattern (36 bp):
TTTTTCAATACAATTTACAGTATTTTCACAATACAA
Found at i:88126815 original size:22 final size:22
Alignment explanation
Indices: 88126749--88126823 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
88126739 CTTTACAATA
*
88126749 CAAT-TTTTACAATACAATTTG
1 CAATATTTTACAATACAACTTG
*
88126770 CAGTATTTTCACAATACAACTTG
1 CAATATTTT-ACAATACAACTTG
*
88126793 CAATATTTTGCAATACCAA-TTG
1 CAATATTTTACAATA-CAACTTG
*
88126815 CATTATTTT
1 CAATATTTT
88126824 TAAAGCACAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.07
22 20 0.43
23 23 0.50
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (22 bp):
CAATATTTTACAATACAACTTG
Found at i:88129553 original size:19 final size:19
Alignment explanation
Indices: 88129518--88129555 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
88129508 TTGTATTGAA
*
88129518 TGTTGTCGAAATTAATGAT
1 TGTTGTCGAAATGAATGAT
88129537 TGTTGCTCG-AATGAATGAT
1 TGTTG-TCGAAATGAATGAT
88129556 GACCCATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (19 bp):
TGTTGTCGAAATGAATGAT
Found at i:88131061 original size:20 final size:22
Alignment explanation
Indices: 88131036--88131078 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
88131026 TTAATTGAAT
88131036 TATTAA-ATAT-AATTAAAATA
1 TATTAACATATCAATTAAAATA
*
88131056 TATTAACTTATCAATTAAAATA
1 TATTAACATATCAATTAAAATA
88131078 T
1 T
88131079 TATAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTAACATATCAATTAAAATA
Found at i:88132924 original size:61 final size:61
Alignment explanation
Indices: 88132855--88132976 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
88132845 TGTAAATATC
* * *
88132855 CTCTTCAAGTTCTCTATGCAAAAATGCAGTTTTTACATCTAACTGCTCAAGCTCCAAATCA
1 CTCTTCAAGTTCTCCATGCAAAAATGCAGTTTTTACATCTAACTGCTCAAACCCCAAATCA
*
88132916 CTCTTCAAGTTCTCCATGCAAAAATGTAGTTTTTACATCTAACTGCTCAAACCCCAAATCA
1 CTCTTCAAGTTCTCCATGCAAAAATGCAGTTTTTACATCTAACTGCTCAAACCCCAAATCA
88132977 TGCATGACTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (61 bp):
CTCTTCAAGTTCTCCATGCAAAAATGCAGTTTTTACATCTAACTGCTCAAACCCCAAATCA
Found at i:88136991 original size:40 final size:40
Alignment explanation
Indices: 88136917--88137094 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
88136907 GAGTCACGTA
** *
88136917 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
88136956 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
88136996 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
88137036 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
88137076 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
88137095 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:88145110 original size:40 final size:40
Alignment explanation
Indices: 88145036--88145213 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
88145026 GAGTCACGTA
** *
88145036 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
88145075 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
88145115 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
88145155 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
88145195 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
88145214 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:88147923 original size:29 final size:31
Alignment explanation
Indices: 88147889--88147959 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
88147879 AGCGTGTTTC
88147889 TATTTTGGTCACCCAAGTT-TAAAATTTT-A
1 TATTTTGGTCACCCAAGTTATAAAATTTTAA
* * * *
88147918 TATTTTAGTCA-CTACGTTATCAAATTTTAA
1 TATTTTGGTCACCCAAGTTATAAAATTTTAA
88147948 TATTTTGGTCAC
1 TATTTTGGTCAC
88147960 ACCATTAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 5 0.15
29 18 0.53
30 11 0.32
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (31 bp):
TATTTTGGTCACCCAAGTTATAAAATTTTAA
Found at i:88149910 original size:16 final size:17
Alignment explanation
Indices: 88149889--88149925 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
88149879 ATATTTGGTC
88149889 ATATAATAAATTATT-A
1 ATATAATAAATTATTCA
88149905 ATATAATAAATTATTCA
1 ATATAATAAATTATTCA
88149922 ATAT
1 ATAT
88149926 TTCAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATAAATTATTCA
Found at i:88151316 original size:10 final size:11
Alignment explanation
Indices: 88151294--88151320 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
88151284 TTTAACTTTC
88151294 TTTTTGAATTT
1 TTTTTGAATTT
88151305 TTTTTGAATTT
1 TTTTTGAATTT
88151316 TTTTT
1 TTTTT
88151321 AAAAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (11 bp):
TTTTTGAATTT
Found at i:88151550 original size:40 final size:40
Alignment explanation
Indices: 88151495--88151574 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
88151485 AAAATTCAAC
88151495 TTGACTGGAACTCGAAACTCGAATAACTCAATTTAACTAA
1 TTGACTGGAACTCGAAACTCGAATAACTCAATTTAACTAA
88151535 TTGACTGGAACTCGAAACTCGAATAACTCAATTTAACTAA
1 TTGACTGGAACTCGAAACTCGAATAACTCAATTTAACTAA
88151575 CTGGAGATTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (40 bp):
TTGACTGGAACTCGAAACTCGAATAACTCAATTTAACTAA
Found at i:88155686 original size:28 final size:27
Alignment explanation
Indices: 88155643--88155748 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 27
88155633 GAAATCAGAG
88155643 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
*
88155670 TTAATCTGGGCCATAGCCCCT-TACAATA
1 TTAATCTGGGCC-TAGCCCATAT-CAATA
* *
88155698 TCAGAGTATACTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAATA
*
88155730 TCAATCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
88155749 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 12 0.19
28 28 0.44
30 2 0.03
32 14 0.22
33 8 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:88155755 original size:61 final size:61
Alignment explanation
Indices: 88155613--88155756 Score: 179
Period size: 60 Copynumber: 2.3 Consensus size: 61
88155603 TCAAGCTTTA
*
88155613 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
* * *
88155675 CTGGGCCATAGCCC-CTTACAATATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAAT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAAT
88155735 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
88155757 GTCGAGATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
60 33 0.46
61 24 0.33
62 14 0.19
63 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (61 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:88155781 original size:60 final size:60
Alignment explanation
Indices: 88155636--88155784 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 60
88155626 CTATTCAGAA
* * *
88155636 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAAT
1 ATCAGAGTAT-ACTGAGCCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCATTACAAT
* * * *
88155697 ATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAA-
1 ATCAGAGTATACTGAGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAAT
* *
88155757 GTC-GAGATATATTGAGCCTTGCCCATAT
1 ATCAGAG-TATACTGAGCCTTGCCCATAT
88155785 TAACACAGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
59 3 0.04
60 49 0.64
61 23 0.30
62 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (60 bp):
ATCAGAGTATACTGAGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAAT
Found at i:88158116 original size:3 final size:3
Alignment explanation
Indices: 88158108--88158149 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
88158098 AAACATACTA
*
88158108 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
88158150 CAAAACACCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:88159641 original size:21 final size:22
Alignment explanation
Indices: 88159608--88159656 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
88159598 ACAATAACTT
88159608 TTTTTATAAATTTTGTTT-ATAA
1 TTTTTATAAATTTT-TTTAATAA
*
88159630 TTTTTAT-GATTTTTTTAATAA
1 TTTTTATAAATTTTTTTAATAA
88159651 TTTTTA
1 TTTTTA
88159657 AGTTATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 15 0.60
22 7 0.28
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTTATAAATTTTTTTAATAA
Found at i:88163716 original size:40 final size:40
Alignment explanation
Indices: 88163671--88163838 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
88163661 CGGAATATAA
88163671 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
88163711 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
88163751 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88163791 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
88163831 CCGGATAT
1 CCGGATAT
88163839 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88171329 original size:40 final size:40
Alignment explanation
Indices: 88171284--88171451 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
88171274 CGGAATATAA
88171284 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
88171324 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
88171364 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
88171404 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
88171444 CCGGATAT
1 CCGGATAT
88171452 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:88181825 original size:3 final size:3
Alignment explanation
Indices: 88181817--88181980 Score: 163
Period size: 3 Copynumber: 54.3 Consensus size: 3
88181807 ACTTATTACT
* *
88181817 TTA TTA TTAA TTA AT- TTA GTA TTA TTA TTTA TTA TTTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA
** ** * ** *
88181864 TCC TTA TTA ACA TTC TTA TTA TTA ACA TT- TTT TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
88181912 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
88181960 TTA TTA TT- TTA CTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
88181981 CATTTTTAAA
Statistics
Matches: 133, Mismatches: 21, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
2 5 0.04
3 116 0.87
4 12 0.09
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:88182132 original size:3 final size:3
Alignment explanation
Indices: 88182124--88182165 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
88182114 CATCTACCAA
88182124 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
88182166 ATTTTAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:88182241 original size:3 final size:3
Alignment explanation
Indices: 88182233--88182283 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
88182223 CACTTTTTTG
** * *
88182233 TTA TTA TTA TTA CCA TTG TTA TTA TTA CTA TTA -TA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
88182279 TTA TT
1 TTA TT
88182284 TTTACCTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:88182275 original size:11 final size:11
Alignment explanation
Indices: 88182234--88182283 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
88182224 ACTTTTTTGT
88182234 TATTATTATTA
1 TATTATTATTA
* *
88182245 CCATTGTTA-T-
1 -TATTATTATTA
*
88182255 TATTACTATTA
1 TATTATTATTA
88182266 TATTATTATTA
1 TATTATTATTA
88182277 TATTATT
1 TATTATT
88182284 TTTACCTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
9 5 0.17
10 1 0.03
11 18 0.60
12 6 0.20
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTATTATTA
Found at i:88194476 original size:45 final size:45
Alignment explanation
Indices: 88194412--88194522 Score: 195
Period size: 45 Copynumber: 2.5 Consensus size: 45
88194402 AGCCTTAACC
* *
88194412 CCCTAACCGGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
88194457 CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
*
88194502 CCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGTAACAG
88194523 ATCAAAGGCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (45 bp):
CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
Found at i:88194591 original size:88 final size:88
Alignment explanation
Indices: 88194457--88194870 Score: 562
Period size: 88 Copynumber: 4.7 Consensus size: 88
88194447 GATCTTATCA
* * *
88194457 CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCACCCTAAGCAGTAG-GGAAAC
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AAC
* *
88194521 AGATCAAAGGCGATGGGCCTTAACC
64 AGATCGAAGACGATGGGCCTTAACC
* * * * * *
88194546 CCCTAAGTAGTAGGGTAATAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAATAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAG
**
88194611 ATCGAAGAC-AGTAAGCCTTAACC
66 ATCGAAGACGA-TGGGCCTTAACC
* * * * *
88194634 CCCTAAGCAGTAGGGTAACAGGTTGAAGATTATAGATCTTATCTCCTTAAGCAGTAGTGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAG
88194699 ATCGAAGACGATGGGCCTTAACC
66 ATCGAAGACGATGGGCCTTAACC
* * *
88194722 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCTTAAGCAGTAGTGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAG
* **
88194787 ATCGAAGACAAACGGCCTTAACC
66 ATCGAAGACGATGGGCCTTAACC
*
88194810 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
88194871 GCAGGTTGAA
Statistics
Matches: 293, Mismatches: 29, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
87 1 0.00
88 268 0.91
89 24 0.08
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (88 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAG
ATCGAAGACGATGGGCCTTAACC
Found at i:88194881 original size:44 final size:44
Alignment explanation
Indices: 88194412--88194881 Score: 254
Period size: 44 Copynumber: 10.6 Consensus size: 44
88194402 AGCCTTAACC
* * * *
88194412 CCCTAACCGGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTT-GAAAATTACAGATCTTATCT
* *
88194457 CCCTAAGCAGTAGGGTAACAGGTTGGAAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTT-GAAAATTACAGATCTTATCT
* * * *** ** ** * *
88194502 CCCTAAGCAGTAGGGAAACA-GATCAAAGGCGATGGGCCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGTTGAAA-ATTACAGATCTTATCT
* * * * *
88194546 CCCTAAGTAGTAGGGTAATAGGCTGAAGATTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCT
* * * * * * * *
88194590 CCCTAAGCAGTAGGGGAATAGATCGAAGACAGTA-AG-CCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGTTGAA-A-ATTACAGATCTTATCT
* *
88194634 CCCTAAGCAGTAGGGTAACAGGTTGAAGATTATAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCT
* * * * * ** ** ** * *
88194678 CCTTAAGCAGTAGTGG-AGCAGATCGAAGACGATGGGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGTTGAAAATTACAGATCTTATCT
* *
88194722 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCT
* * * * * ** * *
88194766 CCTTAAGCAGTAGTGG-AGCAGATCGAAGACA-AAC-GGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGTTGAA-A-ATTACAGATCTTATCT
* *
88194810 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCT
*
88194854 CCCTAAGCAGTAGTGG-AGCAGGTTGAAA
1 CCCTAAGCAGTAG-GGTAACAGGTTGAAA
88194882 TCATCAGTTC
Statistics
Matches: 312, Mismatches: 98, Indels: 31
0.71 0.22 0.07
Matches are distributed among these distances:
42 4 0.01
43 12 0.04
44 215 0.69
45 77 0.25
46 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAGGTTGAAAATTACAGATCTTATCT
Found at i:88195096 original size:88 final size:86
Alignment explanation
Indices: 88194457--88195147 Score: 558
Period size: 88 Copynumber: 7.8 Consensus size: 86
88194447 GATCTTATCA
* * *
88194457 CCCTAAGCAGTAGGGTAACAGGTTGGAA-ATTTACAGATCTTATCACCCTAAGCAGTAG-GGAAA
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAGA-TTACAGATCTTATC-TCCTAAGCAGTAGTGG-AG
* * **
88194520 CAGATCAAAGGCGATGGGCCTTAACC
62 CAGATCGAAGAC-ATAAGCCTTAACC
* * * * **
88194546 CCCTAAGTAGTAGGGTAATAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAATAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATC-TCCTAAGCAGTAGTGGAGCAG
88194611 ATCGAAGACAGTAAGCCTTAACC
65 ATCGAAGACA-TAAGCCTTAACC
* *
88194634 CCCTAAGCAGTAGGGTAACAGGTTGAAGATTATAGATCTTATCTCCTTAAGCAGTAGTGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCC-TAAGCAGTAGTGGAGCAG
**
88194699 ATCGAAGACGATGGGCCTTAACC
65 ATCGAAGAC-ATAAGCCTTAACC
* *
88194722 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCTTAAGCAGTAGTGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCC-TAAGCAGTAGTGGAGCAG
88194787 ATCGAAGACA-AACGGCCTTAACC
65 ATCGAAGACATAA--GCCTTAACC
* *
88194810 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCT-CCTAAGCAGTAGTGGAGCAG
* * * * * * *
88194875 GTTGAA-ATCATCAGTTCGTATCT
65 ATCGAAGA-CATAAG-CCTTAACC
* ** * *** * * *
88194898 CCTTGAAG-TTTCAGCGG-AACA-GATCGAAGACGGC-GAATCTTGTCTCTCTAACCATTAGTGG
1 CCCT-AAGCAGT-AG-GGTAACAGGCT-GAAGATTACAG-ATCTTATCTC-CTAAGCAGTAGTGG
** * ** * * *
88194959 AGCAGATTTAAGCCACCATCC-TATCT
60 AGCAGATCGAAGACATAAGCCTTAACC
* * * *
88194985 CCCTAAGCAGTAGAGG-AATAGGCTGAAGATTGCAGATCTTATCATCCTAAGCAGTAGAGGAACA
1 CCCTAAGCAGTAG-GGTAACAGGCTGAAGATTACAGATCTTATC-TCCTAAGCAGTAGTGGAGCA
88195049 GATCGAAGACGATAAGCCTTAACC
64 GATCGAAGAC-ATAAGCCTTAACC
* ** *
88195073 CCCTAAGCAGTAGGGTAACAGGCTGGAA-ATTCACAGATTTTATCTTCCTGAAGTTGCAGTGGAG
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAGATT-ACAGATCTTATC-TCCT-AAGCAGTAGTGGAG
*
88195137 CAGATTGAAGA
62 CAGATCGAAGA
88195148 TAGCGAATCT
Statistics
Matches: 496, Mismatches: 78, Indels: 55
0.79 0.12 0.09
Matches are distributed among these distances:
86 45 0.09
87 26 0.05
88 311 0.63
89 93 0.19
90 21 0.04
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCCTAAGCAGTAGTGGAGCAGA
TCGAAGACATAAGCCTTAACC
Found at i:88196649 original size:3 final size:3
Alignment explanation
Indices: 88196641--88196943 Score: 137
Period size: 3 Copynumber: 100.3 Consensus size: 3
88196631 ACTTATTACT
* *
88196641 TTA TTA TTAA TTA AT- TTA GTA TTA TTA TTTA TTA TTTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA
* * *
88196688 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TC TTA TT- TTA GTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * * * *
88196734 TCA TTT TTA -AA TTA CTG TTA CTA TT- TGTT TTA CTA TT- TAA CATG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA
* * ** * *
88196778 TTA GTA TTA TTA CTA AAA TT- TT- TTA TTA TCA TTA TTA CTA TGGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T--TA
* * * *
88196823 TTA TTA CTA TTA GTA -TA CTT- TCA CCTA -TA TTTA TT- TTA TCTAA
1 TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA TTA T-T-A
*
88196866 CTTA TCTA CCTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
88196913 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
88196944 ACTTTAAAGT
Statistics
Matches: 225, Mismatches: 48, Indels: 54
0.69 0.15 0.17
Matches are distributed among these distances:
2 20 0.09
3 179 0.80
4 20 0.09
5 5 0.02
6 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:88197018 original size:3 final size:3
Alignment explanation
Indices: 88197012--88197062 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
88197002 ACTTTTTTTG
** * *
88197012 TTA TTA TTA TTA CCA TTG TTA TTA TTA CTA TTA -TA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
88197058 TTA TT
1 TTA TT
88197063 TTTTACCTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:88197054 original size:11 final size:11
Alignment explanation
Indices: 88197013--88197062 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
88197003 CTTTTTTTGT
88197013 TATTATTATTA
1 TATTATTATTA
* *
88197024 CCATTGTTA-T-
1 -TATTATTATTA
*
88197034 TATTACTATTA
1 TATTATTATTA
88197045 TATTATTATTA
1 TATTATTATTA
88197056 TATTATT
1 TATTATT
88197063 TTTTACCTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
9 5 0.17
10 1 0.03
11 18 0.60
12 6 0.20
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTATTATTA
Found at i:88203683 original size:19 final size:19
Alignment explanation
Indices: 88203651--88203688 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
88203641 TAAAAGAAAG
*
88203651 AAAGGGAAACGGAAAAGAA
1 AAAGGAAAACGGAAAAGAA
*
88203670 AAAGGAAAAGGGAAAAGAA
1 AAAGGAAAACGGAAAAGAA
88203689 CGCAAAGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.03, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGGAAAACGGAAAAGAA
Found at i:88204974 original size:31 final size:32
Alignment explanation
Indices: 88204934--88204993 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
88204924 TAAAGCCCAA
* *
88204934 TGACTTAAAT-AAAATTTTTTGAATAGTTAAG
1 TGACGTAAATGAAAATTTTTTAAATAGTTAAG
**
88204965 TGACGTAAATGAATTTTTTTTAAATAGTT
1 TGACGTAAATGAAAATTTTTTAAATAGTT
88204994 TAATGACTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 9 0.38
32 15 0.62
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.45
Consensus pattern (32 bp):
TGACGTAAATGAAAATTTTTTAAATAGTTAAG
Found at i:88207314 original size:18 final size:19
Alignment explanation
Indices: 88207288--88207328 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
88207278 TAACTATACT
88207288 TTAAGTATAAGATATT-TA
1 TTAAGTATAAGATATTATA
* *
88207306 TTAATTATAATATATTATA
1 TTAAGTATAAGATATTATA
88207325 TTAA
1 TTAA
88207329 CTATTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTAAGTATAAGATATTATA
Found at i:88213741 original size:40 final size:40
Alignment explanation
Indices: 88213687--88213768 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
88213677 ATGAAAGAAG
** *
88213687 AATGAAAATGATAATCATATATGAAACATTAACTAAAAGA
1 AATGAAAAAAATAATCATATATGAAACATTAAATAAAAGA
88213727 AATGAAAAAAATAATCATATATGAAACATTAAATAAAAGA
1 AATGAAAAAAATAATCATATATGAAACATTAAATAAAAGA
88213767 AA
1 AA
88213769 CTTCCTGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.62, C:0.06, G:0.09, T:0.23
Consensus pattern (40 bp):
AATGAAAAAAATAATCATATATGAAACATTAAATAAAAGA
Found at i:88213762 original size:22 final size:22
Alignment explanation
Indices: 88213697--88213762 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
88213687 AATGAAAATG
88213697 ATAATCATATATGAAACATTAA
1 ATAATCATATATGAAACATTAA
* * * *
88213719 CTAA-AAGAAATGAAA-A--AA
1 ATAATCATATATGAAACATTAA
88213737 ATAATCATATATGAAACATTAA
1 ATAATCATATATGAAACATTAA
88213759 ATAA
1 ATAA
88213763 AAGAAACTTC
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 5 0.16
19 8 0.25
20 2 0.06
21 8 0.25
22 9 0.28
ACGTcount: A:0.61, C:0.08, G:0.06, T:0.26
Consensus pattern (22 bp):
ATAATCATATATGAAACATTAA
Found at i:88219063 original size:35 final size:34
Alignment explanation
Indices: 88219024--88219102 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 34
88219014 ATCTATTCTA
88219024 AAAAGAAAGGAAAAACCTAATATAAAA-AT-AAGAAG
1 AAAAGAAA--AAAAACCTAATATAAAATATGAA-AAG
* *
88219059 AAAAGAAAAGAAACCTAATCTAAAATTATGAAAAG
1 AAAAGAAAAAAAACCTAATATAAAA-TATGAAAAG
88219094 AAAAGAAAA
1 AAAAGAAAA
88219103 TGTTTGACCT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 15 0.38
35 22 0.56
36 2 0.05
ACGTcount: A:0.68, C:0.06, G:0.13, T:0.13
Consensus pattern (34 bp):
AAAAGAAAAAAAACCTAATATAAAATATGAAAAG
Found at i:88219083 original size:33 final size:34
Alignment explanation
Indices: 88219036--88219102 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
88219026 AAGAAAGGAA
88219036 AAACCTAATATAAAA-AT-AAGAAGAAAAGAAAAG
1 AAACCTAATATAAAATATGAA-AAGAAAAGAAAAG
*
88219069 AAACCTAATCTAAAATTATGAAAAGAAAAGAAAA
1 AAACCTAATATAAAA-TATGAAAAGAAAAGAAAA
88219103 TGTTTGACCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 14 0.47
35 14 0.47
36 2 0.07
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.15
Consensus pattern (34 bp):
AAACCTAATATAAAATATGAAAAGAAAAGAAAAG
Found at i:88224200 original size:40 final size:40
Alignment explanation
Indices: 88224150--88224257 Score: 121
Period size: 41 Copynumber: 2.7 Consensus size: 40
88224140 TAGATGGAGT
*
88224150 TTTAGCGGCGTTTTTCAAAAAACGCCGCAATAGGTCGAG-C
1 TTTAGTGGCGTTTTTCAAAAAACGCCGCAATAGGTC-AGCC
* * * *
88224190 TTTCGTGGCGTTTTTTGAAAAAGCGCCGCTATAGGTCAGCC
1 TTTAGTGGCG-TTTTTCAAAAAACGCCGCAATAGGTCAGCC
* *
88224231 TTTAGTGGCGTTTTAC-CAAAACGCCGC
1 TTTAGTGGCGTTTTTCAAAAAACGCCGC
88224258 TAAAAGGTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
39 9 0.16
40 14 0.25
41 33 0.59
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
TTTAGTGGCGTTTTTCAAAAAACGCCGCAATAGGTCAGCC
Found at i:88224217 original size:41 final size:41
Alignment explanation
Indices: 88224150--88224244 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
88224140 TAGATGGAGT
*
88224150 TTTAGCGGCG-TTTTTCAAAAAACGCCGCAATAGGTCGAG-C
1 TTTAGTGGCGTTTTTTCAAAAAACGCCGCAATAGGTC-AGCC
* * * *
88224190 TTTCGTGGCGTTTTTTGAAAAAGCGCCGCTATAGGTCAGCC
1 TTTAGTGGCGTTTTTTCAAAAAACGCCGCAATAGGTCAGCC
88224231 TTTAGTGGCGTTTT
1 TTTAGTGGCGTTTT
88224245 ACCAAAACGC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 10 0.21
41 37 0.79
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTTCAAAAAACGCCGCAATAGGTCAGCC
Found at i:88224473 original size:74 final size:74
Alignment explanation
Indices: 88224361--88224517 Score: 260
Period size: 74 Copynumber: 2.1 Consensus size: 74
88224351 GCGTTTTTTG
* * *
88224361 AAAAACGCCACTAAAATGTTAAGAAAAACGATGTCATTTTATATGAGCTTCATTGGCAGTAGTGA
1 AAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGAGCTTCATTGGCAGTAGCGA
88224426 CGTTTTCCC
66 CGTTTTCCC
* *
88224435 AAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGTGCTTCATTGGCAGTAGCGG
1 AAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGAGCTTCATTGGCAGTAGCGA
*
88224500 TGTTTTCCC
66 CGTTTTCCC
88224509 AAAAACGCC
1 AAAAACGCC
88224518 GCAGTAGATC
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGAGCTTCATTGGCAGTAGCGA
CGTTTTCCC
Found at i:88224507 original size:188 final size:187
Alignment explanation
Indices: 88224233--88224610 Score: 542
Period size: 188 Copynumber: 2.0 Consensus size: 187
88224223 GGTCAGCCTT
* * ** * *
88224233 TAGTGGCGTTTTACCAAAACGCCGCTAAAAGGTTAATCAAAACGACGTCGTTTTACATGAGCTTC
1 TAGTGACGTTTTACCAAAACGCCACTAAAAGGTTAAGAAAAACAACGTCATTTTACATGAGCTTC
* ** * *
88224298 ATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGCTA-AAGGTGGACCTATAGCGGCGTTTTTTGA
66 ATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGC-AGAAGATCAAACTATAGCGGCGTTTTTTCA
* *
88224362 AAAACGCCACTAAAATGTTAAGAAAAACGATGTCATTTTATATGAGCTTCATTGGCAG
130 AAAACGCCACTAAAATGTTAAGAAAAACGACGTCAGTTTATATGAGCTTCATTGGCAG
* * * *
88224420 TAGTGACGTTTTCCCAAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGTGCTT
1 TAGTGACGTTTTACC-AAAACGCCACTAAAAGGTTAAGAAAAACAACGTCATTTTACATGAGCTT
* * *
88224485 CATTGGCAGTAGCGGTGTTTTCCCAAAAACGCCGCAGTAGATCAAACTTTAGCGGCGTTTTTTCA
65 CATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTATAGCGGCGTTTTTTCA
*
88224550 AAAACGCCGCTAAAATGTTAAGAAAAACGACGTCAGTTTATATGAGCTTCATTGGCAG
130 AAAACGCCACTAAAATGTTAAGAAAAACGACGTCAGTTTATATGAGCTTCATTGGCAG
88224608 TAG
1 TAG
88224611 CGGCGCTTTT
Statistics
Matches: 168, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
187 14 0.08
188 154 0.92
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (187 bp):
TAGTGACGTTTTACCAAAACGCCACTAAAAGGTTAAGAAAAACAACGTCATTTTACATGAGCTTC
ATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTATAGCGGCGTTTTTTCAA
AAACGCCACTAAAATGTTAAGAAAAACGACGTCAGTTTATATGAGCTTCATTGGCAG
Found at i:88225082 original size:15 final size:14
Alignment explanation
Indices: 88225064--88225106 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
88225054 TTTAATATTT
88225064 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
88225079 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
88225094 TTATGATTTAGGG
1 TTATGGTTTAGGG
88225107 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:88225113 original size:14 final size:13
Alignment explanation
Indices: 88225071--88225136 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 13
88225061 TTTTTATAGG
*
88225071 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
88225086 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
88225100 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
**
88225114 TTTATGTTTTATGA
1 TTTA-GGGTTATGA
88225128 TTTAGGGTT
1 TTTAGGGTT
88225137 TGAGGTTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
13 9 0.21
14 20 0.47
15 13 0.30
16 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:88225152 original size:28 final size:28
Alignment explanation
Indices: 88225094--88225152 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
88225084 GGTTTAAGGG
**
88225094 TTATGATTTAGGGTTGATGATTTATGTT
1 TTATGATTTAGGGTTGATGATTTATAAT
*
88225122 TTATGATTTAGGGTTTGA-GGTTTATAAT
1 TTATGATTTAGGG-TTGATGATTTATAAT
88225150 TTA
1 TTA
88225153 GAAGGTTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGATGATTTATAAT
Found at i:88225536 original size:14 final size:14
Alignment explanation
Indices: 88225517--88225548 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
88225507 TAGGGTCTAT
88225517 GTTTGGGGTTTAAG
1 GTTTGGGGTTTAAG
*
88225531 GTTTGGGGTTTATG
1 GTTTGGGGTTTAAG
88225545 GTTT
1 GTTT
88225549 AGGTTATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.41, T:0.50
Consensus pattern (14 bp):
GTTTGGGGTTTAAG
Found at i:88225653 original size:8 final size:8
Alignment explanation
Indices: 88225640--88225722 Score: 65
Period size: 7 Copynumber: 11.4 Consensus size: 8
88225630 AAGATTTTAT
*
88225640 TTTTAGTG
1 TTTTAGGG
88225648 TTTTAGGG
1 TTTTAGGG
88225656 -TTTAGGG
1 TTTTAGGG
88225663 -TTTAGGG
1 TTTTAGGG
88225670 -TTTAGGG
1 TTTTAGGG
*
88225677 -TCTAGGG
1 TTTTAGGG
*
88225684 -CTTAGGG
1 TTTTAGGG
*
88225691 -TTTAAGG
1 TTTTAGGG
88225698 TTTTAGGG
1 TTTTAGGG
88225706 -TTTA-GG
1 TTTTAGGG
*
88225712 CTTTAGGG
1 TTTTAGGG
88225720 TTT
1 TTT
88225723 AATTTTGGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
6 2 0.03
7 45 0.70
8 17 0.27
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.46
Consensus pattern (8 bp):
TTTTAGGG
Found at i:88225661 original size:7 final size:7
Alignment explanation
Indices: 88225649--88225723 Score: 105
Period size: 7 Copynumber: 10.6 Consensus size: 7
88225639 TTTTTAGTGT
88225649 TTTAGGG
1 TTTAGGG
88225656 TTTAGGG
1 TTTAGGG
88225663 TTTAGGG
1 TTTAGGG
88225670 TTTAGGG
1 TTTAGGG
*
88225677 TCTAGGG
1 TTTAGGG
*
88225684 CTTAGGG
1 TTTAGGG
*
88225691 TTTAAGGT
1 TTT-AGGG
88225699 TTTAGGG
1 TTTAGGG
*
88225706 TTTAGGC
1 TTTAGGG
88225713 TTTAGGG
1 TTTAGGG
88225720 TTTA
1 TTTA
88225724 ATTTTGGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
7 53 0.90
8 6 0.10
ACGTcount: A:0.16, C:0.04, G:0.37, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:88229230 original size:9 final size:9
Alignment explanation
Indices: 88229194--88229312 Score: 85
Period size: 9 Copynumber: 12.6 Consensus size: 9
88229184 ATTGATCATT
*
88229194 ACTTAAATA
1 ACTTACATA
*
88229203 AATTACATA
1 ACTTACATA
* *
88229212 ACTCATATA
1 ACTTACATA
88229221 ACTTACATA
1 ACTTACATA
*
88229230 ATTTACATAACA
1 ACTTACAT---A
88229242 ACTTACATA
1 ACTTACATA
* *
88229251 ACTCACATT
1 ACTTACATA
*
88229260 ACTTAAATA
1 ACTTACATA
*
88229269 AATTACATA
1 ACTTACATA
*
88229278 ACTCACATA
1 ACTTACATA
*
88229287 ACGTACATAACA
1 ACTTACAT---A
88229299 ACTTACATA
1 ACTTACATA
88229308 ACTTA
1 ACTTA
88229313 ACTAATACAT
Statistics
Matches: 83, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
9 67 0.81
12 16 0.19
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:88229264 original size:39 final size:39
Alignment explanation
Indices: 88229205--88229279 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
88229195 CTTAAATAAA
* * *
88229205 TTACATAACTCATATAACTTACATAATTTACATAACAAC
1 TTACATAACTCACATAACTTAAATAAATTACATAACAAC
*
88229244 TTACATAACTCACATTACTTAAATAAATTACATAAC
1 TTACATAACTCACATAACTTAAATAAATTACATAAC
88229280 TCACATAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (39 bp):
TTACATAACTCACATAACTTAAATAAATTACATAACAAC
Found at i:88229296 original size:27 final size:30
Alignment explanation
Indices: 88229218--88229310 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 30
88229208 CATAACTCAT
* ** *
88229218 ATAACTTACATAATTTACATAACAACTTAC
1 ATAACTCACATAACGTAAATAACAACTTAC
* *
88229248 ATAACTCACATTACTTAAAT-A-AA-TTAC
1 ATAACTCACATAACGTAAATAACAACTTAC
*
88229275 ATAACTCACATAACGTACATAACAACTTAC
1 ATAACTCACATAACGTAAATAACAACTTAC
88229305 ATAACT
1 ATAACT
88229311 TAACTAATAC
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 21 0.40
28 3 0.06
29 3 0.06
30 26 0.49
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (30 bp):
ATAACTCACATAACGTAAATAACAACTTAC
Found at i:88235018 original size:79 final size:80
Alignment explanation
Indices: 88234875--88235082 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
88234865 ACCTTCGGAG
* * ** * * * *
88234875 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
88234939 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
88234954 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
88235016 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
88235033 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
88235083 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:88235027 original size:40 final size:40
Alignment explanation
Indices: 88234975--88235082 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
88234965 TATCACGATT
** *
88234975 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
88235015 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
88235055 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
88235083 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:88241278 original size:21 final size:21
Alignment explanation
Indices: 88241252--88241299 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
88241242 TCAACTTAGA
* * *
88241252 GCGGAGGCAGCAGTGCGGGAG
1 GCGGAGACAGCAGCGAGGGAG
88241273 GCGGAGACAGCAGCGAGGGAG
1 GCGGAGACAGCAGCGAGGGAG
88241294 GCGGAG
1 GCGGAG
88241300 CAGAACAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.56, T:0.02
Consensus pattern (21 bp):
GCGGAGACAGCAGCGAGGGAG
Found at i:88241663 original size:34 final size:34
Alignment explanation
Indices: 88241612--88241677 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
88241602 TATAAAAGCG
* * *
88241612 CCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTTAT
1 CCGCGAAAAGTCCTGGTCTTTAGAGGCGTTTTAT
88241646 CCGCGAAAAGTCCTGGTCTTTAGAGGCGTTTT
1 CCGCGAAAAGTCCTGGTCTTTAGAGGCGTTTT
88241678 TTAAGAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (34 bp):
CCGCGAAAAGTCCTGGTCTTTAGAGGCGTTTTAT
Found at i:88245667 original size:44 final size:46
Alignment explanation
Indices: 88245568--88245673 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 46
88245558 CTTATATTAC
* * **
88245568 GTTTGGTT-CATGTAATGGAATAGAGTTATAATCAGTAATTCAATT
1 GTTTGGTTGAATGAAATGGAATAGAACTATAATCAGTAATTCAATT
88245613 GTTTGGTTGAATGAAATGGAATAGAACTATAAT-AGT-ATTC-ATGT
1 GTTTGGTTGAATGAAATGGAATAGAACTATAATCAGTAATTCAAT-T
88245657 GTTTGGTTGAATGAAAT
1 GTTTGGTTGAATGAAAT
88245674 AAATGTTCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
43 2 0.04
44 22 0.40
45 11 0.20
46 20 0.36
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (46 bp):
GTTTGGTTGAATGAAATGGAATAGAACTATAATCAGTAATTCAATT
Found at i:88250278 original size:26 final size:26
Alignment explanation
Indices: 88250248--88250318 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
88250238 AACACACCAT
*
88250248 TATCGTAGCAAAGCTGCCAATAATAA
1 TATCGCAGCAAAGCTGCCAATAATAA
88250274 TATCGCAGCAAAGCTGCCAATAATAA
1 TATCGCAGCAAAGCTGCCAATAATAA
88250300 TATCGCAGCAAAGCTGCCA
1 TATCGCAGCAAAGCTGCCA
88250319 GTAACAGTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAATAA
Found at i:88250337 original size:26 final size:26
Alignment explanation
Indices: 88250248--88250341 Score: 118
Period size: 26 Copynumber: 3.6 Consensus size: 26
88250238 AACACACCAT
* *
88250248 TATCGTAGCAAAGCTGCCAATAATAA
1 TATCGCAGCAAAGCTGCCAATAACAA
*
88250274 TATCGCAGCAAAGCTGCCAATAATAA
1 TATCGCAGCAAAGCTGCCAATAACAA
* *
88250300 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAATAACAA
*
88250326 TAAT-GCAACAAAGCTG
1 T-ATCGCAGCAAAGCTG
88250342 TCAGTATCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 60 0.97
27 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAACAA
Found at i:88254812 original size:24 final size:24
Alignment explanation
Indices: 88254785--88254837 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
88254775 TCCACAATTC
88254785 TCTCCACGAAATCTTCTTTGATTT
1 TCTCCACGAAATCTTCTTTGATTT
88254809 TCTCCACGAAATCTTCTTTGATTT
1 TCTCCACGAAATCTTCTTTGATTT
88254833 TCTCC
1 TCTCC
88254838 GTGACCCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.19, C:0.28, G:0.08, T:0.45
Consensus pattern (24 bp):
TCTCCACGAAATCTTCTTTGATTT
Found at i:88258492 original size:28 final size:27
Alignment explanation
Indices: 88258429--88258498 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
88258419 ATAGTGAGTC
88258429 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
88258456 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
88258484 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
88258499 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Done.