Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 29 of 425
Found at i:7393801 original size:16 final size:16
Alignment explanation
Indices: 7393782--7393817 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7393772 CCTTTCCCCC
7393782 CTCTCCTTCCTCCCTT
1 CTCTCCTTCCTCCCTT
* *
7393798 CTCTCTTTTCTCCCTT
1 CTCTCCTTCCTCCCTT
7393814 CTCT
1 CTCT
7393818 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CTCTCCTTCCTCCCTT
Found at i:7394362 original size:17 final size:17
Alignment explanation
Indices: 7394340--7394373 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7394330 TATCCACTTT
7394340 TTATATTATTATTATTA
1 TTATATTATTATTATTA
*
7394357 TTATATTATTTTTATTA
1 TTATATTATTATTATTA
7394374 CTATGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:7397567 original size:74 final size:75
Alignment explanation
Indices: 7397304--7397570 Score: 259
Period size: 77 Copynumber: 3.5 Consensus size: 75
7397294 AAACTGACGT
* * * * * * * * *
7397304 TCAACTCATCTCTCGGATTATGAGTTAATTTTTGAAAAAAATAAAAAAATTGAAAATTCCTCAGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAAAA-ACAAAAACTAAAAATACCTCAGC
* **
7397369 GTGTGACCTGAGGC
63 G-ATGACCCAAGGC
* * *
7397383 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAACAGAGACTAAAGATACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAACAAAAACTAAAAATACCTCAGCG
*
7397447 TATGACCCGAGGC
64 -ATGACCCAAGGC
* * *
7397460 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAACAAAAATTAAAAATACCTCGGCG-T
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAAAAACTAAAAATACCTCAGCGAT
* *
7397524 GTCTCAAGGC
66 GACCCAAGGC
*
7397534 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
7397571 CATAAATTGA
Statistics
Matches: 160, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
74 43 0.27
75 5 0.03
76 23 0.14
77 55 0.34
78 4 0.03
79 24 0.15
81 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (75 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAAAAACTAAAAATACCTCAGCGAT
GACCCAAGGC
Found at i:7397591 original size:14 final size:14
Alignment explanation
Indices: 7397568--7397597 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7397558 TTGATTTTTG
*
7397568 AAACATAAATTGAA
1 AAACAGAAATTGAA
7397582 AAACAGAAATTGAA
1 AAACAGAAATTGAA
7397596 AA
1 AA
7397598 TACCTTAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:7397708 original size:75 final size:75
Alignment explanation
Indices: 7397577--7397803 Score: 314
Period size: 75 Copynumber: 3.0 Consensus size: 75
7397567 GAAACATAAA
* * * * **
7397577 TTGAAAAACAGAAATTGAAAATACCTTAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAACGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATAT
7397642 GAGTTGATTTTT
64 GAGTTGATTTTT
* * *
7397654 TTG-ATGAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTTACCTCTCGCAATAT
1 TTGAAAG-ACAGAAATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
7397717 GAGTTGATTTTT
64 GAGTTGATTTTT
*
7397729 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7397794 GTTGATTTTT
66 GTTGATTTTT
7397804 GAAATAGAAA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
75 100 0.74
76 12 0.09
77 23 0.17
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (75 bp):
TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:7397723 original size:162 final size:151
Alignment explanation
Indices: 7397379--7397803 Score: 500
Period size: 161 Copynumber: 2.7 Consensus size: 151
7397369 GTGTGACCTG
* *
7397379 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAGACT-AAAGATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAA-ATACCTC
* * *
7397443 AGCGTATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAAACAAAAA
65 AACG--TGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAA
*
7397506 TTAAAAATACCTCGGCGTGTCTCA
128 TTAAAAATACCTCAGCGTGTCTCA
*
7397530 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT------T---TTGAAAAACAGAAATTGA
* * * *
7397595 AAATACCTTAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AT
56 AAATACCTCA--ACGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
* * * *
7397659 GAACAGAAATTAAAATTACCTCAGCGTGTC-CTG
119 AAACAAAAATTAAAAATACCTCAGCGTGTCTC-A
* *
7397692 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCA
* *
7397757 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
66 ACGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7397804 GAAATAGAAA
Statistics
Matches: 235, Mismatches: 23, Indels: 33
0.81 0.08 0.11
Matches are distributed among these distances:
150 43 0.18
151 31 0.13
152 30 0.13
155 1 0.00
158 1 0.00
161 63 0.27
162 60 0.26
163 6 0.03
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (151 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCA
ACGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTA
AAAATACCTCAGCGTGTCTCA
Found at i:7397733 original size:238 final size:236
Alignment explanation
Indices: 7397378--7397807 Score: 657
Period size: 237 Copynumber: 1.8 Consensus size: 236
7397368 TGTGTGACCT
*
7397378 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAGACTAAAGATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAACTAAAGATACCTC
7397443 AGCGTATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAACAAAAATT
66 AGCG-ATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAAACAAAAATT
** *
7397508 AAAAATACCTCGGCGTGTCTCAAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACA
129 AAAAATACCTCAACGTGTCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACA
7397573 TAAATTGAAAAACAGAAATTGAAAATACCTTAGCATGTGAGTC
194 TAAATTGAAAAACAGAAATTGAAAATACCTTAGCATGTGAGTC
** *
7397616 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAA-ATTACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAACTAAAGA-TACCT
* * * * * *
7397680 CAGCG-TGTCCTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAAT
65 CAGCGATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAACAAAAAT
* **
7397744 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
128 TAAAAATACCTCAACGTGTCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
7397808 TAGAAATAAA
Statistics
Matches: 173, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
236 36 0.21
237 69 0.40
238 68 0.39
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (236 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAACTAAAGATACCTC
AGCGATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAA
AAATACCTCAACGTGTCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATA
AATTGAAAAACAGAAATTGAAAATACCTTAGCATGTGAGTC
Found at i:7406145 original size:4 final size:4
Alignment explanation
Indices: 7406107--7406135 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7406097 ATGTACATGC
7406107 AATG AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG AATG A
7406136 CAAATGAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:7406156 original size:22 final size:22
Alignment explanation
Indices: 7406115--7406169 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7406105 GCAATGAATG
* *
7406115 AATGAATGAATGAATGAATGACA
1 AATGAATG-TTGAATAAATGACA
*
7406138 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
7406160 AATGAATGTT
1 AATGAATGTT
7406170 AGTCATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:7410146 original size:26 final size:26
Alignment explanation
Indices: 7410113--7410254 Score: 79
Period size: 28 Copynumber: 5.5 Consensus size: 26
7410103 TATGTATATA
7410113 TATT-AAAATATAAACATAATAATAG
1 TATTAAAAATATAAACATAATAATAG
*
7410138 TATT---AA-A-AAGCAT-ATACATAG
1 TATTAAAAATATAAACATAATA-ATAG
* *
7410159 TATTAACAATATATACATAAT-ATAG
1 TATTAAAAATATAAACATAATAATAG
*
7410184 TTATTAAAAAATATATACATAAAATAATATG
1 -TATT-AAAAATATAAACAT--AATAATA-G
* *
7410215 TA-AAAAAATATATATAAATAAT-ATAG
1 TATTAAAAATATA-A-ACATAATAATAG
7410241 TATTAAAAAATATA
1 TATT-AAAAATATA
7410255 CATGATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 31
0.70 0.06 0.24
Matches are distributed among these distances:
20 3 0.03
21 13 0.14
22 1 0.01
23 2 0.02
24 2 0.02
25 9 0.10
26 11 0.12
27 18 0.20
28 21 0.23
29 3 0.03
30 8 0.09
31 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (26 bp):
TATTAAAAATATAAACATAATAATAG
Found at i:7410152 original size:47 final size:47
Alignment explanation
Indices: 7410113--7410204 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
7410103 TATGTATATA
7410113 TATTAA-AATATAAACATAATAATAG-TATTAAAAAGCATATACATAG
1 TATTAACAATATAAACATAAT-ATAGTTATTAAAAAGCATATACATAG
* **
7410159 TATTAACAATATATACATAATATAGTTATTAAAAAATATATACATA
1 TATTAACAATATAAACATAATATAGTTATTAAAAAGCATATACATA
7410205 AAATAATATG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
46 10 0.24
47 31 0.76
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (47 bp):
TATTAACAATATAAACATAATATAGTTATTAAAAAGCATATACATAG
Found at i:7410174 original size:20 final size:21
Alignment explanation
Indices: 7410134--7410177 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7410124 AAACATAATA
7410134 ATAGTATTAAAAAGCATATAC
1 ATAGTATTAAAAAGCATATAC
* *
7410155 ATAGTATTAACAA-TATATAC
1 ATAGTATTAAAAAGCATATAC
7410175 ATA
1 ATA
7410178 ATATAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAGTATTAAAAAGCATATAC
Found at i:7410202 original size:27 final size:26
Alignment explanation
Indices: 7410117--7410254 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 26
7410107 TATATATATT
*
7410117 AAAATATAAACATAATAATAGTATTAA
1 AAAATATATACATAAT-ATAGTATTAA
**
7410144 AAAGCATATAC-----ATAGTATT-A
1 AAAATATATACATAATATAGTATTAA
*
7410164 ACAATATATACATAATATAGTTATTAA
1 AAAATATATACATAATATAG-TATTAA
* *
7410191 AAAATATATACATAAAATAATATGTAAAA
1 AAAATATATACATAATATAGTAT-T--AA
*
7410220 AAATATATATAAATAATATAGTATTAA
1 AAA-ATATATACATAATATAGTATTAA
7410247 AAAATATA
1 AAAATATA
7410255 CATGATATAT
Statistics
Matches: 88, Mismatches: 12, Indels: 23
0.72 0.10 0.19
Matches are distributed among these distances:
20 9 0.10
21 8 0.09
25 4 0.05
26 12 0.14
27 32 0.36
29 6 0.07
30 17 0.19
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (26 bp):
AAAATATATACATAATATAGTATTAA
Found at i:7410237 original size:28 final size:27
Alignment explanation
Indices: 7410155--7410254 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 27
7410145 AAGCATATAC
* *
7410155 ATAGTATTAACAATATATACAT--AAT
1 ATAGTATAAAAAATATATACATAAAAT
7410180 ATAGTTATTAAAAAATATATACATAAAAT
1 ATAG-TA-TAAAAAATATATACATAAAAT
*
7410209 AATATGTA-AAAAAATATATATA-AATAAT
1 -ATA-GTATAAAAAATATATACATAA-AAT
7410237 ATAGTATTAAAAAATATA
1 ATAGTA-TAAAAAATATA
7410255 CATGATATAT
Statistics
Matches: 63, Mismatches: 3, Indels: 15
0.78 0.04 0.19
Matches are distributed among these distances:
25 4 0.06
26 5 0.08
27 19 0.30
28 26 0.41
29 3 0.05
30 5 0.08
31 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (27 bp):
ATAGTATAAAAAATATATACATAAAAT
Found at i:7410264 original size:26 final size:25
Alignment explanation
Indices: 7410096--7410265 Score: 95
Period size: 26 Copynumber: 6.6 Consensus size: 25
7410086 AATGTTACCT
*
7410096 ATATACATATGTATATA-TATTAAAAT
1 ATATACATA--TATATAGTATTAAAAA
*
7410122 ATAAACATA-ATAATAGTATT--AAA
1 ATATACATATAT-ATAGTATTAAAAA
* * *
7410145 A-A-GCATATACATAGTATTAACAAT
1 ATATACATATATATAGTATTAA-AAA
7410169 ATATACATA-ATATAGTTATTAAAAAA
1 ATATACATATATATAG-TATT-AAAAA
* *
7410195 TATATACATA-AAATAATATGTAAAAAA
1 -ATATACATATATATAGTAT-T-AAAAA
*
7410222 ATATATATAAATAATATAGTATTAAAAA
1 ATATACAT--AT-ATATAGTATTAAAAA
7410250 ATATACATGATATATA
1 ATATACAT-ATATATA
7410266 TAAATATAAT
Statistics
Matches: 113, Mismatches: 15, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
21 12 0.11
22 2 0.02
23 5 0.04
24 6 0.05
25 10 0.09
26 33 0.29
27 24 0.21
28 13 0.12
29 1 0.01
30 7 0.06
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (25 bp):
ATATACATATATATAGTATTAAAAA
Found at i:7410347 original size:24 final size:23
Alignment explanation
Indices: 7410108--7410269 Score: 71
Period size: 27 Copynumber: 6.5 Consensus size: 23
7410098 ATACATATGT
* *
7410108 ATATATATTAAAATATAAACATA
1 ATATATATAAAAATATATACATA
*
7410131 ATAATAGTATTAAAAAGCATATACAT-
1 AT-ATA-TA-TAAAAA-TATATACATA
* *
7410157 A-GTAT-TAACAATATATACATA
1 ATATATATAAAAATATATACATA
7410178 ATATAGTTATTAAAAAATATATACATAAA
1 ATATA--TA-T-AAAAATATATACAT--A
* *
7410207 ATAATATGTAAAAAAATATATATAAATA
1 AT-ATA--T-ATAAAA-ATATATACATA
*
7410235 ATATAGTATTAAAAA-ATATACATG
1 ATATA-TA-TAAAAATATATACATA
7410259 ATATATATAAA
1 ATATATATAAA
7410270 TATAATATTA
Statistics
Matches: 107, Mismatches: 15, Indels: 35
0.68 0.10 0.22
Matches are distributed among these distances:
20 8 0.07
21 6 0.06
22 6 0.06
23 5 0.05
24 18 0.17
25 4 0.04
26 13 0.12
27 23 0.21
28 3 0.03
29 7 0.07
30 13 0.12
31 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
ATATATATAAAAATATATACATA
Found at i:7410348 original size:24 final size:23
Alignment explanation
Indices: 7410286--7410473 Score: 89
Period size: 23 Copynumber: 8.2 Consensus size: 23
7410276 ATTAAAAGAT
*
7410286 ATATATACGTAATATATATAAAA
1 ATATATACATAATATATATAAAA
* *
7410309 ATGTATACATAATATAGTATTAAA
1 ATATATACATAATATA-TATAAAA
*
7410333 ATATTTACATAATATATACATATTAGAA
1 ATATATACATAATATAT--ATA--A-AA
*
7410361 ATA-ATA-ATAATGT-TA-AAAA
1 ATATATACATAATATATATAAAA
*
7410380 CA-ACTAT-CAATAATACTACAT--AA
1 -ATA-TATAC-ATAATA-TATATAAAA
*
7410403 ATATATACAT-ATATATATTAAAG
1 ATATATACATAATATATA-TAAAA
7410426 ATATATACAT-ATATA-AT-AAA
1 ATATATACATAATATATATAAAA
*
7410446 ACATATAC-TAATAT-TAATAACAA
1 ATATATACATAATATAT-ATAA-AA
7410469 ATATA
1 ATATA
7410474 ATAGGGGTAA
Statistics
Matches: 126, Mismatches: 15, Indels: 48
0.67 0.08 0.25
Matches are distributed among these distances:
19 4 0.03
20 18 0.14
21 9 0.07
22 14 0.11
23 43 0.34
24 21 0.17
25 3 0.02
26 6 0.05
27 3 0.02
28 5 0.04
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (23 bp):
ATATATACATAATATATATAAAA
Found at i:7413344 original size:23 final size:23
Alignment explanation
Indices: 7413314--7413358 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7413304 GGACAATTCG
7413314 ACTTCTTATTTTAATTGGATAGA
1 ACTTCTTATTTTAATTGGATAGA
7413337 ACTTCTTATTTTAATTGGATAG
1 ACTTCTTATTTTAATTGGATAG
7413359 GAGAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (23 bp):
ACTTCTTATTTTAATTGGATAGA
Found at i:7416297 original size:74 final size:74
Alignment explanation
Indices: 7416176--7416322 Score: 258
Period size: 74 Copynumber: 2.0 Consensus size: 74
7416166 AAGTTTATAT
* *
7416176 ATCAAGCTGTGATAGGACTTAGATCCATGGCGGTTGGTTTCGTTCCGGTACCAATTGTACTAGTT
1 ATCAAGCTGTGATAGGACTTAGATCCATGGCAGTTGGTTTCGTTCCGGTACCAATTGTACCAGTT
7416241 GATATACTA
66 GATATACTA
* *
7416250 ATCAAGCTGTGATAGGTCTTAGATCCATGGCAGTTGGTTTCGTTCCGGTACCAGTTGTACCAGTT
1 ATCAAGCTGTGATAGGACTTAGATCCATGGCAGTTGGTTTCGTTCCGGTACCAATTGTACCAGTT
7416315 GATATACT
66 GATATACT
7416323 CCGTTTCGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (74 bp):
ATCAAGCTGTGATAGGACTTAGATCCATGGCAGTTGGTTTCGTTCCGGTACCAATTGTACCAGTT
GATATACTA
Found at i:7419849 original size:26 final size:26
Alignment explanation
Indices: 7419813--7419894 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
7419803 TGAAATTCCA
7419813 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7419839 ATCATGAAACATTTACCTAACACATT
1 ATCATGGAACATTTACCTAACCCATT
7419865 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7419891 ATCA
1 ATCA
7419895 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7425617 original size:12 final size:12
Alignment explanation
Indices: 7425573--7425620 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
7425563 GAGCACAAGC
*
7425573 CCGACACCGTCA
1 CCGACACCGGCA
** *
7425585 CCCTCACCAGCA
1 CCGACACCGGCA
*
7425597 CCGGCACCGGCA
1 CCGACACCGGCA
7425609 CCGACACCGGCA
1 CCGACACCGGCA
7425621 TACACAAATA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.23, C:0.52, G:0.21, T:0.04
Consensus pattern (12 bp):
CCGACACCGGCA
Found at i:7429586 original size:21 final size:21
Alignment explanation
Indices: 7429540--7429579 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7429530 TCAGAAACCC
7429540 TAAAAATTAGGTTTTTTTGCA
1 TAAAAATTAGGTTTTTTTGCA
7429561 TAAAAATTAGGTTTTTTTG
1 TAAAAATTAGGTTTTTTTG
7429580 GGTAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.50
Consensus pattern (21 bp):
TAAAAATTAGGTTTTTTTGCA
Found at i:7432242 original size:26 final size:26
Alignment explanation
Indices: 7432213--7432348 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
7432203 TGATACAAAT
* *
7432213 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7432239 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
7432265 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
7432291 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7432317 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7432343 TGATAA
1 TGATAA
7432349 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7435214 original size:15 final size:15
Alignment explanation
Indices: 7435182--7435224 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
7435172 ACTATTAAAA
* *
7435182 AATGATAGTAAGAGT
1 AATGATAATAATAGT
*
7435197 AATGATAATAATATT
1 AATGATAATAATAGT
*
7435212 AATGGTAATAATA
1 AATGATAATAATA
7435225 CAAGTAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.33
Consensus pattern (15 bp):
AATGATAATAATAGT
Found at i:7435410 original size:3 final size:3
Alignment explanation
Indices: 7435366--7435455 Score: 103
Period size: 3 Copynumber: 30.3 Consensus size: 3
7435356 AGATAGTGTG
* * * * *
7435366 ATA ATG ATA AT- ATG ATA GTA ATCA AT- ATA GTA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
7435410 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7435456 CACAACAAGT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
2 4 0.05
3 66 0.90
4 3 0.04
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7438726 original size:21 final size:21
Alignment explanation
Indices: 7438702--7438741 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7438692 TTTAATTTAT
7438702 ATAAAAATAAAAAATATTTCA
1 ATAAAAATAAAAAATATTTCA
* * *
7438723 ATAATAATATAAATTATTT
1 ATAAAAATAAAAAATATTT
7438742 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAAATAAAAAATATTTCA
Found at i:7439578 original size:23 final size:23
Alignment explanation
Indices: 7439548--7439618 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
7439538 TTGTGAAAAT
*
7439548 TATA-AAAAATTAAAATAATAAA
1 TATACAAAAATTAAAAAAATAAA
*
7439570 TATACAAAACTTAAAAAAATTAAA
1 TATACAAAAATTAAAAAAA-TAAA
*
7439594 -AT-CATAAAATTAAAAAAATATA
1 TATACA-AAAATTAAAAAAATAAA
7439616 TAT
1 TAT
7439619 TTCTTAGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 9 0.22
23 28 0.68
24 4 0.10
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (23 bp):
TATACAAAAATTAAAAAAATAAA
Found at i:7439675 original size:21 final size:21
Alignment explanation
Indices: 7439642--7439682 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7439632 GAGTTTTTAG
* *
7439642 AAAACTTTTAGAATTTTATGA
1 AAAAATTTAAGAATTTTATGA
7439663 AAAAATTTAAGAATTTTATG
1 AAAAATTTAAGAATTTTATG
7439683 TCTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (21 bp):
AAAAATTTAAGAATTTTATGA
Found at i:7439867 original size:19 final size:20
Alignment explanation
Indices: 7439829--7439869 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7439819 AACAAACACA
* *
7439829 TTTTTTAAATATTATGAAAT
1 TTTTTTAAAAAATATGAAAT
7439849 TTTTTTAAAAAATAT-AAAT
1 TTTTTTAAAAAATATGAAAT
7439868 TT
1 TT
7439870 CAAAATTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTTTAAAAAATATGAAAT
Found at i:7441380 original size:45 final size:45
Alignment explanation
Indices: 7441316--7441405 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
7441306 GAAAAAAATG
7441316 CATGTTATTTGTTCTCTTGTTCTTTGGTCTCTAAACTTCAATTCA
1 CATGTTATTTGTTCTCTTGTTCTTTGGTCTCTAAACTTCAATTCA
7441361 CATGTTATTTGTTCTCTTGTTCTTTGGTCTCTAAACTTCAATTCA
1 CATGTTATTTGTTCTCTTGTTCTTTGGTCTCTAAACTTCAATTCA
7441406 TTCTTCTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.18, C:0.20, G:0.11, T:0.51
Consensus pattern (45 bp):
CATGTTATTTGTTCTCTTGTTCTTTGGTCTCTAAACTTCAATTCA
Found at i:7446230 original size:91 final size:90
Alignment explanation
Indices: 7446055--7446263 Score: 244
Period size: 90 Copynumber: 2.3 Consensus size: 90
7446045 GCAGTTTATT
* * * *
7446055 TGCAAACACTGGTGGTTTATCCACAAATTTATTGGCAGCTTTTATCTGCAAACTGTTGTGCATTC
1 TGCAAACACTTGTGGCTTATCCACAAATTTACTGACAGCTTTTATCTGCAAACTGTTGTGCATTC
* * *
7446120 ACAACCTACTGGTAACGTATTAACC
66 ACAACCTAATAGCAACGTATTAACC
* * *
7446145 TGCAAACACTTGTGGCTTATCCACAACTTTTACTGACAGCTTTTATTTGCAAACTTGTTGTGTAT
1 TGCAAACACTTGTGGCTTATCCACAA-ATTTACTGACAGCTTTTATCTGCAAAC-TGTTGTGCAT
*
7446210 TCACAA-CTAATAGCAGCGTATTAACC
64 TCACAACCTAATAGCAACGTATTAACC
* * *
7446236 TAC-AACACTTATTG-TTCATCCACAAATT
1 TGCAAACACTTGTGGCTT-ATCCACAAATT
7446264 AGAGTGTCCA
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
89 4 0.04
90 41 0.41
91 41 0.41
92 15 0.15
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (90 bp):
TGCAAACACTTGTGGCTTATCCACAAATTTACTGACAGCTTTTATCTGCAAACTGTTGTGCATTC
ACAACCTAATAGCAACGTATTAACC
Found at i:7450588 original size:33 final size:33
Alignment explanation
Indices: 7450543--7450608 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
7450533 ACTAGAGCTA
7450543 TATGATTCGTTTT-CTTCAACAAAGTCATAATAG
1 TATGATTCGTTTTCCTT-AACAAAGTCATAATAG
*
7450576 TATGATTTGTTTTCCTTAACAAAGTCATAATAG
1 TATGATTCGTTTTCCTTAACAAAGTCATAATAG
7450609 GATTTAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.90
34 3 0.10
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (33 bp):
TATGATTCGTTTTCCTTAACAAAGTCATAATAG
Found at i:7451039 original size:33 final size:33
Alignment explanation
Indices: 7450997--7451073 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
7450987 TTCCCTCACC
7450997 TATCTTCGATGTGCAAAAGAGTTTCAAGCAAAT
1 TATCTTCGATGTGCAAAAGAGTTTCAAGCAAAT
7451030 TATCTTCGATGTGCAAAAGAGTTTCAAGCAAAT
1 TATCTTCGATGTGCAAAAGAGTTTCAAGCAAAT
* *
7451063 TAACCTCGATG
1 TATCTTCGATG
7451074 ATACAATGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (33 bp):
TATCTTCGATGTGCAAAAGAGTTTCAAGCAAAT
Found at i:7457993 original size:28 final size:27
Alignment explanation
Indices: 7457932--7457999 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
7457922 TATGGGTAAA
*
7457932 TGATTTATATCTGGGATTTATTTACAT
1 TGATTTATATTTGGGATTTATTTACAT
**
7457959 TTTTTTATATTTGGGAATTTATTTA-AT
1 TGATTTATATTTGGG-ATTTATTTACAT
7457986 TCGATTTATATTTG
1 T-GATTTATATTTG
7458000 TTAGCAATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 15 0.44
28 19 0.56
ACGTcount: A:0.25, C:0.04, G:0.13, T:0.57
Consensus pattern (27 bp):
TGATTTATATTTGGGATTTATTTACAT
Found at i:7461624 original size:39 final size:39
Alignment explanation
Indices: 7461546--7461622 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
7461536 ATACAATTCT
7461546 ATGGGTGAGATTTAATTTATTATATATATATTTAGAAAA
1 ATGGGTGAGATTTAATTTATTATATATATATTTAGAAAA
7461585 ATGGGTGAGATTTAATTTA-T-TATATATATTTAGAAAA
1 ATGGGTGAGATTTAATTTATTATATATATATTTAGAAAA
7461622 A
1 A
7461623 AAAACCTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 18 0.47
38 1 0.03
39 19 0.50
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.43
Consensus pattern (39 bp):
ATGGGTGAGATTTAATTTATTATATATATATTTAGAAAA
Found at i:7472084 original size:30 final size:30
Alignment explanation
Indices: 7472050--7472155 Score: 86
Period size: 30 Copynumber: 3.5 Consensus size: 30
7472040 ACTACTGCCG
* * *
7472050 CCTTGTCCTCCACCATGTTCGCCACTACCA
1 CCTTGTCCTCCACCATATCCACCACTACCA
* *
7472080 CCTTGTCCGCCACCATATCCACCACTACCG
1 CCTTGTCCTCCACCATATCCACCACTACCA
* ** *** *
7472110 CCATGTCCTCTGCCACCGCCACCACTACCG
1 CCTTGTCCTCCACCATATCCACCACTACCA
* *
7472140 CCTTTTCTTCCACCAT
1 CCTTGTCCTCCACCAT
7472156 GCCCTCCACT
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.17, C:0.49, G:0.09, T:0.25
Consensus pattern (30 bp):
CCTTGTCCTCCACCATATCCACCACTACCA
Found at i:7472153 original size:72 final size:70
Alignment explanation
Indices: 7472089--7472253 Score: 208
Period size: 72 Copynumber: 2.4 Consensus size: 70
7472079 ACCTTGTCCG
* ** * * *
7472089 CCACCA-TATCCACCACTACCGCCATGTCCTCTGCCACCGCCACCACTACCGCCTTTTCTTCCAC
1 CCACCACTATCCACCACTACCACCATGTCCTCCACCACCGCCACCACTACCACCTTGTCCTCCAC
*
7472153 CATGC
66 CATGT
* * *
7472158 CCTCCACTACTGCCACCACTACCACCGTGTCCTCCACTACCGCCACCACTACCACCTTGTCCTCC
1 CCACCACTA-T-CCACCACTACCACCATGTCCTCCACCACCGCCACCACTACCACCTTGTCCTCC
7472223 ACCATGT
64 ACCATGT
7472230 CCACCACTA-CCACCACTACCACCA
1 CCACCACTATCCACCACTACCACCA
7472254 CTTTGTCCTC
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
69 19 0.23
70 2 0.02
71 1 0.01
72 59 0.73
ACGTcount: A:0.21, C:0.52, G:0.07, T:0.19
Consensus pattern (70 bp):
CCACCACTATCCACCACTACCACCATGTCCTCCACCACCGCCACCACTACCACCTTGTCCTCCAC
CATGT
Found at i:7472183 original size:30 final size:30
Alignment explanation
Indices: 7472149--7472244 Score: 131
Period size: 30 Copynumber: 3.2 Consensus size: 30
7472139 GCCTTTTCTT
*
7472149 CCACCATGCCCTCCACTACTGCCACCACTA
1 CCACCATGTCCTCCACTACTGCCACCACTA
* *
7472179 CCACCGTGTCCTCCACTACCGCCACCACTA
1 CCACCATGTCCTCCACTACTGCCACCACTA
* *
7472209 CCACCTTGTCCTCCACCA-TGTCCACCACTA
1 CCACCATGTCCTCCACTACTG-CCACCACTA
7472239 CCACCA
1 CCACCA
7472245 CTACCACCAC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 1 0.02
30 57 0.98
ACGTcount: A:0.22, C:0.53, G:0.07, T:0.18
Consensus pattern (30 bp):
CCACCATGTCCTCCACTACTGCCACCACTA
Found at i:7472225 original size:42 final size:42
Alignment explanation
Indices: 7472179--7472291 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
7472169 GCCACCACTA
* * * *
7472179 CCACCGTGTCCTCCACTACCGCCACCACTACCACCTTGTCCT
1 CCACCATGTCCACCACTACCACCACCACCACCACCTTGTCCT
* *
7472221 CCACCATGTCCACCACTACCACCACTACCACCACTTTGTCCT
1 CCACCATGTCCACCACTACCACCACCACCACCACCTTGTCCT
* * *
7472263 CCACTATATCCACCACTGCCACCACCACC
1 CCACCATGTCCACCACTACCACCACCACC
7472292 GTGTCCTCTG
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.52, G:0.06, T:0.19
Consensus pattern (42 bp):
CCACCATGTCCACCACTACCACCACCACCACCACCTTGTCCT
Found at i:7472242 original size:9 final size:9
Alignment explanation
Indices: 7472230--7472255 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7472220 TCCACCATGT
7472230 CCACCACTA
1 CCACCACTA
7472239 CCACCACTA
1 CCACCACTA
7472248 CCACCACT
1 CCACCACT
7472256 TTGTCCTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.12
Consensus pattern (9 bp):
CCACCACTA
Found at i:7472254 original size:72 final size:72
Alignment explanation
Indices: 7472124--7472687 Score: 205
Period size: 72 Copynumber: 7.7 Consensus size: 72
7472114 GTCCTCTGCC
* * * * ** *
7472124 ACCGCCACCACTACCGCCTTTTCTTCCACCATGCCCTCCACTACTGCCACCACTACCACCGTGTC
1 ACCGCCACCACTACCACCTTGTCCTCCACCATGCCCACCACTACCACCACCACCACCACCGTGTC
7472189 CTCCACT
66 CTCCACT
* * **
7472196 ACCGCCACCACTACCACCTTGTCCTCCACCATGTCCACCACTACCACCACTACCACCACTTTGTC
1 ACCGCCACCACTACCACCTTGTCCTCCACCATGCCCACCACTACCACCACCACCACCACCGTGTC
7472261 CTCCACTAT
66 CTCCAC--T
* * * ** * ** *
7472270 ATCCACCACTGCCACCACCACCGTGTCCT-CTGC-TGCCGCCACCACTACCTCC-CTGTCCTCCA
1 A-CCGCCA---CCACTACCACCTTGTCCTCCACCATG-C-CCACCACTACCACCAC-CACCACCA
* *
7472332 CCATGTCCACCACT
59 CCGTGTCCTCCACT
* * * * * * * * * **** * * *
7472346 GCCTCTACCACTACCGCCATGTCCTCCGCCA-CCGCCACCACTGCCTCCTTTTCCTCCACCATGC
1 ACCGCCACCACTACCACCTTGTCCTCCACCATGC-CCACCACTACCACCACCACCACCACCGTGT
7472410 CCTCCACT
65 CCTCCACT
* * **** * *
7472418 ACCGCCACCACTACCACCATGTCCTCTA-C-TGCCACCACCACTACCACCTTGTCCTCCACCATG
1 ACCGCCACCACTACCACCTTGTCCTCCACCATG-C-CCACCACTACCACCACCACCACCACCGTG
*
7472481 TCCACCACT
64 TCCTCCACT
* * * * * * * * * *
7472490 ACCACAACCTTGCCCT-CCACCATATTCGCCA-C-TG-CCACTACCT-CCTTGTCCACCACTACC
1 ACCGCCA-C---CACTACCACCTTGTCCTCCACCATGCCCACCA-CTACC---ACCACCACCACC
* * * *
7472550 GCCATGTCCTCCGCC
58 ACCGTGTCCTCCACT
* * * * * * * *
7472565 ACCACCACCACTACCACCTTTTCCTCCACCATGCCCGCCACTACCGCCACTACTACCGCCATGTC
1 ACCGCCACCACTACCACCTTGTCCTCCACCATGCCCACCACTACCACCACCACCACCACCGTGTC
*
7472630 CTCTACT
66 CTCCACT
* * * *
7472637 GCCGCCACCACTACCTCCGTGTCCTCCACCATGTCCACCACTACCACCACC
1 ACCGCCACCACTACCACCTTGTCCTCCACCATGCCCACCACTACCACCACC
7472688 CTGTCTTCCA
Statistics
Matches: 373, Mismatches: 92, Indels: 54
0.72 0.18 0.10
Matches are distributed among these distances:
71 4 0.01
72 252 0.68
73 6 0.02
74 7 0.02
75 51 0.14
76 6 0.02
77 3 0.01
78 44 0.12
ACGTcount: A:0.19, C:0.52, G:0.08, T:0.21
Consensus pattern (72 bp):
ACCGCCACCACTACCACCTTGTCCTCCACCATGCCCACCACTACCACCACCACCACCACCGTGTC
CTCCACT
Found at i:7472332 original size:21 final size:21
Alignment explanation
Indices: 7472308--7472377 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
7472298 TCTGCTGCCG
*
7472308 CCACCACTACCTCCCTGTCCT
1 CCACCACTACCACCCTGTCCT
*
7472329 CCACCA-TGTCCACCACTG-CCT
1 CCACCACT-ACCACC-CTGTCCT
* * *
7472350 CTACCACTACCGCCATGTCCT
1 CCACCACTACCACCCTGTCCT
*
7472371 CCGCCAC
1 CCACCAC
7472378 CGCCACCACT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
20 3 0.08
21 30 0.81
22 4 0.11
ACGTcount: A:0.17, C:0.54, G:0.09, T:0.20
Consensus pattern (21 bp):
CCACCACTACCACCCTGTCCT
Found at i:7472369 original size:108 final size:106
Alignment explanation
Indices: 7472173--7472777 Score: 284
Period size: 108 Copynumber: 5.6 Consensus size: 106
7472163 ACTACTGCCA
* *
7472173 CCACTACCACCGTGTCCTCCACTACCGCCACCACTACCACCTTGTCCTCCACCATGTCCACCACT
1 CCACCACCACCGTGTCCTCCACTACCGCCACCACTACCACCCTGTCCTCCACCATGTCCACCACT
7472238 ACCACCACTACCACCACTTTGTCCTCCACTATATCCACCACTG
66 ACCACCACTACCACCA--TTGTCCTCCACTATATCCACCACTG
** * *
7472281 CCACCACCACCGTGTCCTCTGCTGCCGCCACCACTACCTCCCTGTCCTCCACCATGTCCACCACT
1 CCACCACCACCGTGTCCTCCACTACCGCCACCACTACCACCCTGTCCTCCACCATGTCCACCACT
* * * * ***
7472346 GCCTCTACCACTACCGCCA-TGTCCTCCGCCACCGCCACCACTG
66 -AC-C-ACCACTACCACCATTGTCCTCCACTATATCCACCACTG
* * * * * *
7472389 CCTCCTTTTCCTCCACCATGCCCTCCACTACCGCCACCACTACCACCATGTCCTCTA-C-TG---
1 ---CC---ACCACCACCGTGTCCTCCACTACCGCCACCACTACCACCCTGTCCTCCACCATGTCC
* *
7472449 --C-C-ACCACCACTACCACC-TTGTCCTCCACCATGTCCACCACT-
60 ACCACTACCACCACTACCACCATTGTCCTCCACTATATCCACCACTG
* * * * * * *
7472490 --ACCACAACCTTGCCCTCCACCATATTCGCCACTGCCACTACCTCCTTGTCCACCACTACCGCC
1 CCACCACCACCGTGTCCTCCA-C-TA-CCGCCA---CCACTACCACCCTGT----C-CT-CCACC
* * * * ** *
7472553 ATGTCCTCCGCCACCACCACCACTACCACC-TTTTCCTCCACCATGCCCGCCACTACCG
54 ATG---TCCACCACTACCACCACTACCACCATTGTCCTCCACTATATCCACCACT---G
* * * * * *
7472611 CCACTACTACCGCCATGTCCTCTACTGCCGCCACCACTACCTCCGTGTCCTCCACCATGTCCACC
1 CCAC--C-ACCACCGTGTCCTCCACTACCGCCACCACTACCACCCTGTCCTCCACCATGTCCACC
* * **
7472676 ACTACCA-C-C-A-C-CC--TGTCTTCCACCATATCCACCACCA
63 ACTACCACCACTACCACCATTGTCCTCCACTATATCCACCACTG
** * * * * *
7472713 CCACTGCCGCCATGTCCTCC-CTCGCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCACCAC
1 CCACCACCACCGTGTCCTCCACT-ACCGCCACCACTACCACCCTGTCCTCCACCATGTCCACCAC
7472777 T
65 T
7472778 GCCTCCACCA
Statistics
Matches: 389, Mismatches: 64, Indels: 97
0.71 0.12 0.18
Matches are distributed among these distances:
93 15 0.04
94 1 0.00
95 2 0.01
96 5 0.01
98 2 0.01
99 66 0.17
102 34 0.09
103 2 0.01
104 3 0.01
105 18 0.05
106 4 0.01
107 4 0.01
108 79 0.20
109 2 0.01
110 2 0.01
111 25 0.06
112 2 0.01
113 1 0.00
114 46 0.12
115 3 0.01
116 2 0.01
117 36 0.09
120 14 0.04
123 7 0.02
124 1 0.00
125 2 0.01
126 11 0.03
ACGTcount: A:0.19, C:0.52, G:0.08, T:0.20
Consensus pattern (106 bp):
CCACCACCACCGTGTCCTCCACTACCGCCACCACTACCACCCTGTCCTCCACCATGTCCACCACT
ACCACCACTACCACCATTGTCCTCCACTATATCCACCACTG
Found at i:7472391 original size:42 final size:42
Alignment explanation
Indices: 7472310--7472392 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
7472300 TGCTGCCGCC
* * *
7472310 ACCACTACCTCCCTGTCCTCCACCATGTCCACCACTGCCTCT
1 ACCACTACCGCCATGTCCTCCACCACGTCCACCACTGCCTCT
*
7472352 ACCACTACCGCCATGTCCTCCGCCACCG-CCACCACTGCCTC
1 ACCACTACCGCCATGTCCTCCACCA-CGTCCACCACTGCCTC
7472393 CTTTTCCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.17, C:0.54, G:0.10, T:0.19
Consensus pattern (42 bp):
ACCACTACCGCCATGTCCTCCACCACGTCCACCACTGCCTCT
Found at i:7472435 original size:30 final size:30
Alignment explanation
Indices: 7472401--7472494 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 30
7472391 TCCTTTTCCT
*
7472401 CCACCATGCCCTCCACTACCGCCACCACTA
1 CCACCATGTCCTCCACTACCGCCACCACTA
* * *
7472431 CCACCATGTCCTCTACTGCCACCACCACTA
1 CCACCATGTCCTCCACTACCGCCACCACTA
* * *
7472461 CCACCTTGTCCTCCACCA-TGTCCACCACTA
1 CCACCATGTCCTCCACTACCG-CCACCACTA
7472491 CCAC
1 CCAC
7472495 AACCTTGCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.22, C:0.53, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCATGTCCTCCACTACCGCCACCACTA
Found at i:7472443 original size:42 final size:42
Alignment explanation
Indices: 7472362--7472443 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
7472352 ACCACTACCG
* * * * * *
7472362 CCATGTCCTCCGCCACCGCCACCACTGCCTCCTTTTCCTCCA
1 CCATGCCCTCCACCACCGCCACCACTACCACCATGTCCTCCA
*
7472404 CCATGCCCTCCACTACCGCCACCACTACCACCATGTCCTC
1 CCATGCCCTCCACCACCGCCACCACTACCACCATGTCCTC
7472444 TACTGCCACC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.16, C:0.55, G:0.09, T:0.21
Consensus pattern (42 bp):
CCATGCCCTCCACCACCGCCACCACTACCACCATGTCCTCCA
Found at i:7472500 original size:33 final size:33
Alignment explanation
Indices: 7472449--7472512 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
7472439 TCCTCTACTG
* * *
7472449 CCACCACCACTACCACCTTGTCCTCCACCATGT
1 CCACCACCACCACAACCTTGCCCTCCACCATGT
*
7472482 CCACCACTACCACAACCTTGCCCTCCACCAT
1 CCACCACCACCACAACCTTGCCCTCCACCAT
7472513 ATTCGCCACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.23, C:0.53, G:0.05, T:0.19
Consensus pattern (33 bp):
CCACCACCACCACAACCTTGCCCTCCACCATGT
Found at i:7472522 original size:33 final size:33
Alignment explanation
Indices: 7472449--7472532 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
7472439 TCCTCTACTG
* * * * *
7472449 CCACCACCACTACCACCTTGTCCTCCACCATGT
1 CCACCACTACCACAACCTTGCCCTCCACCATAT
7472482 CCACCACTACCACAACCTTGCCCTCCACCATAT
1 CCACCACTACCACAACCTTGCCCTCCACCATAT
* * * *
7472515 TCGCCACTGCCACTACCT
1 CCACCACTACCACAACCT
7472533 CCTTGTCCAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.23, C:0.51, G:0.06, T:0.20
Consensus pattern (33 bp):
CCACCACTACCACAACCTTGCCCTCCACCATAT
Found at i:7472557 original size:18 final size:18
Alignment explanation
Indices: 7472524--7472558 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7472514 TTCGCCACTG
* *
7472524 CCACTACCTCCTTGTCCA
1 CCACTACCGCCATGTCCA
7472542 CCACTACCGCCATGTCC
1 CCACTACCGCCATGTCC
7472559 TCCGCCACCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.51, G:0.09, T:0.23
Consensus pattern (18 bp):
CCACTACCGCCATGTCCA
Found at i:7472576 original size:189 final size:189
Alignment explanation
Indices: 7472352--7472703 Score: 587
Period size: 189 Copynumber: 1.9 Consensus size: 189
7472342 CACTGCCTCT
* * * *
7472352 ACCACTACCGCCATGTCCTCCGCCACCGCCACCACTGCCTCCTTTTCCTCCACCATGCCCTCCAC
1 ACCACTACCGCCATGTCCTCCGCCACCACCACCACTACCACCTTTTCCTCCACCATGCCCGCCAC
*
7472417 TACCGCCACCACTACCACCATGTCCTCTACTGCCACCACCACTACCACCTTGTCCTCCACCATGT
66 TACCGCCACCACTACCACCATGTCCTCTACTGCCACCACCACTACCACCGTGTCCTCCACCATGT
*
7472482 CCACCACTACCACAACCTTGCCCTCCACCATATTCGCCACTGCCACTACCTCCTTGTCC
131 CCACCACTACCACAACCCTGCCCTCCACCATATTCGCCACTGCCACTACCTCCTTGTCC
7472541 ACCACTACCGCCATGTCCTCCGCCACCACCACCACTACCACCTTTTCCTCCACCATGCCCGCCAC
1 ACCACTACCGCCATGTCCTCCGCCACCACCACCACTACCACCTTTTCCTCCACCATGCCCGCCAC
* * * *
7472606 TACCGCCACTACTACCGCCATGTCCTCTACTGCCGCCACCACTACCTCCGTGTCCTCCACCATGT
66 TACCGCCACCACTACCACCATGTCCTCTACTGCCACCACCACTACCACCGTGTCCTCCACCATGT
* * *
7472671 CCACCACTACCACCACCCTGTCTTCCACCATAT
131 CCACCACTACCACAACCCTGCCCTCCACCATAT
7472704 CCACCACCAC
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
189 150 1.00
ACGTcount: A:0.19, C:0.52, G:0.08, T:0.21
Consensus pattern (189 bp):
ACCACTACCGCCATGTCCTCCGCCACCACCACCACTACCACCTTTTCCTCCACCATGCCCGCCAC
TACCGCCACCACTACCACCATGTCCTCTACTGCCACCACCACTACCACCGTGTCCTCCACCATGT
CCACCACTACCACAACCCTGCCCTCCACCATATTCGCCACTGCCACTACCTCCTTGTCC
Found at i:7472627 original size:30 final size:30
Alignment explanation
Indices: 7472593--7472651 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
7472583 TTTTCCTCCA
*
7472593 CCATGCCCGCCACTACCGCCACTACTACCG
1 CCATGCCCGCCACTACCGCCACCACTACCG
* * * *
7472623 CCATGTCCTCTACTGCCGCCACCACTACC
1 CCATGCCCGCCACTACCGCCACCACTACC
7472652 TCCGTGTCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.53, G:0.12, T:0.17
Consensus pattern (30 bp):
CCATGCCCGCCACTACCGCCACCACTACCG
Found at i:7472675 original size:30 final size:30
Alignment explanation
Indices: 7472641--7472783 Score: 92
Period size: 30 Copynumber: 4.5 Consensus size: 30
7472631 TCTACTGCCG
*
7472641 CCACCACTACCTCCGTGTCCTCCACCATGT
1 CCACCACTACCTCCCTGTCCTCCACCATGT
* * *
7472671 CCACCACTACCACCACCCTGTCTTCCACCATAT
1 CCACCACT---ACCTCCCTGTCCTCCACCATGT
* **
7472704 CCACCACCACCACTGCCGCCATGTCCTCC-CTCGCCG-
1 CCACCACTA-C-CT--C-CC-TGTCCTCCAC-C-ATGT
*
7472740 CCACCACTACCTCCCTGTCCTCCACCATGC
1 CCACCACTACCTCCCTGTCCTCCACCATGT
*
7472770 CCACCACTGCCTCC
1 CCACCACTACCTCC
7472784 ACCACTGCCT
Statistics
Matches: 86, Mismatches: 14, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
29 1 0.01
30 31 0.36
31 4 0.05
32 2 0.02
33 25 0.29
34 3 0.03
35 4 0.05
36 16 0.19
ACGTcount: A:0.17, C:0.55, G:0.08, T:0.19
Consensus pattern (30 bp):
CCACCACTACCTCCCTGTCCTCCACCATGT
Found at i:7472764 original size:21 final size:21
Alignment explanation
Indices: 7472740--7472803 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
7472730 TCCCTCGCCG
7472740 CCACCACTACCTCCCTGTCCT
1 CCACCACTACCTCCCTGTCCT
* *
7472761 CCACCA-TGCCCACCACTG-CCT
1 CCACCACT-ACCTCC-CTGTCCT
* *
7472782 CCACCACTGCCTCCTTGTCCT
1 CCACCACTACCTCCCTGTCCT
7472803 C
1 C
7472804 TGCCACCACC
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
20 3 0.09
21 27 0.79
22 4 0.12
ACGTcount: A:0.14, C:0.56, G:0.08, T:0.22
Consensus pattern (21 bp):
CCACCACTACCTCCCTGTCCT
Found at i:7472785 original size:12 final size:12
Alignment explanation
Indices: 7472758--7472795 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
7472748 ACCTCCCTGT
7472758 CCTCCACCA-TG
1 CCTCCACCACTG
7472769 -C-CCACCACTG
1 CCTCCACCACTG
7472779 CCTCCACCACTG
1 CCTCCACCACTG
7472791 CCTCC
1 CCTCC
7472796 TTGTCCTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 6 0.25
10 3 0.12
11 1 0.04
12 14 0.58
ACGTcount: A:0.16, C:0.61, G:0.08, T:0.16
Consensus pattern (12 bp):
CCTCCACCACTG
Found at i:7472815 original size:99 final size:99
Alignment explanation
Indices: 7472611--7472795 Score: 266
Period size: 99 Copynumber: 1.9 Consensus size: 99
7472601 GCCACTACCG
* * *
7472611 CCACTACTACCGCCATGTCCTCTACTGCCGCCACCACTACCTCCGTGTCCTCCACCATGTCCACC
1 CCACCACTACCGCCATGTCCTCTACTGCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCACC
*
7472676 ACTACCACCACCCTGTCTTCCACCATATCCACCA
66 ACTACCACCACCCTGTCCTCCACCATATCCACCA
* *
7472710 CCACCACTGCCGCCATGTCCTC-CCTCGCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCAC
1 CCACCACTACCGCCATGTCCTCTACT-GCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCAC
* *
7472774 CACTGCCTCCACCACTG-CCTCC
65 CACTACCACCACC-CTGTCCTCC
7472796 TTGTCCTCTG
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
98 2 0.03
99 71 0.93
100 3 0.04
ACGTcount: A:0.17, C:0.54, G:0.09, T:0.19
Consensus pattern (99 bp):
CCACCACTACCGCCATGTCCTCTACTGCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCACC
ACTACCACCACCCTGTCCTCCACCATATCCACCA
Found at i:7472831 original size:72 final size:71
Alignment explanation
Indices: 7472710--7473004 Score: 277
Period size: 72 Copynumber: 4.1 Consensus size: 71
7472700 ATATCCACCA
* * *
7472710 CCACCACTGCCGCCATGTCCTCC-CTCGCCGCCACCACTACCTCCCTGTCCTCCACCATGCCCAC
1 CCACCACT-CCTCCATGTCCTCCGC-CACCACCACCACTACCTCCCTGTCCTCCACCATGCCCAC
* *
7472774 CACTGCCT
64 CACTACCG
* * * * * * *
7472782 CCACCACTGCCTCCTTGTCCTCTGCCACCACCACCACTGCTTCCTTGTCCTCCACCCTACCCACC
1 CCACCACT-CCTCCATGTCCTCCGCCACCACCACCACTACCTCCCTGTCCTCCACCATGCCCACC
*
7472847 ACTACCT
65 ACTACCG
* * * * * * *
7472854 CCACCACTACTGCCATGTCCTCCGCCACCACCGCCACTGCCTCCCTGCCCTCCACTATGTCTACC
1 CCACCACTCCT-CCATGTCCTCCGCCACCACCACCACTACCTCCCTGTCCTCCACCATGCCCACC
7472919 ACTACCG
65 ACTACCG
* * * *** * * *
7472926 CCACCGCTACCACCATGACCTCCGTTGCCACCATCACTACCTCCTTGTCCTCCACCATGCCCGCC
1 CCACCACT-CCTCCATGTCCTCCGCCACCACCACCACTACCTCCCTGTCCTCCACCATGCCCACC
7472991 ACTACCG
65 ACTACCG
7472998 CCACCAC
1 CCACCAC
7473005 CACTACCACC
Statistics
Matches: 179, Mismatches: 41, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
71 2 0.01
72 175 0.98
73 2 0.01
ACGTcount: A:0.16, C:0.54, G:0.10, T:0.20
Consensus pattern (71 bp):
CCACCACTCCTCCATGTCCTCCGCCACCACCACCACTACCTCCCTGTCCTCCACCATGCCCACCA
CTACCG
Found at i:7472846 original size:30 final size:30
Alignment explanation
Indices: 7472782--7472855 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
7472772 ACCACTGCCT
**
7472782 CCACCACTGCCTCCTTGTCCTCTGCCACCA
1 CCACCACTGCCTCCTTGTCCTCCACCACCA
* *
7472812 CCACCACTGCTTCCTTGTCCTCCACC-CTA
1 CCACCACTGCCTCCTTGTCCTCCACCACCA
*
7472841 CCCACCACTACCTCC
1 -CCACCACTGCCTCC
7472856 ACCACTACTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 2 0.05
30 35 0.95
ACGTcount: A:0.15, C:0.55, G:0.07, T:0.23
Consensus pattern (30 bp):
CCACCACTGCCTCCTTGTCCTCCACCACCA
Found at i:7472889 original size:21 final size:21
Alignment explanation
Indices: 7472845--7472897 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7472835 ACCCTACCCA
* * *
7472845 CCACTACCTCCACCACTACTG
1 CCACTGCCTCCACCACCACCG
*
7472866 CCA-TGTCCTCCGCCACCACCG
1 CCACTG-CCTCCACCACCACCG
7472887 CCACTGCCTCC
1 CCACTGCCTCC
7472898 CTGCCCTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 23 0.88
22 2 0.08
ACGTcount: A:0.17, C:0.57, G:0.09, T:0.17
Consensus pattern (21 bp):
CCACTGCCTCCACCACCACCG
Found at i:7472958 original size:21 final size:21
Alignment explanation
Indices: 7472934--7472984 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
7472924 CGCCACCGCT
7472934 ACCACCATGACCTCCGTTG-CC
1 ACCACCATGACCTCC-TTGTCC
*
7472955 ACCATCACT-ACCTCCTTGTCC
1 ACCACCA-TGACCTCCTTGTCC
*
7472976 TCCACCATG
1 ACCACCATG
7472985 CCCGCCACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.17
21 19 0.79
22 1 0.04
ACGTcount: A:0.20, C:0.47, G:0.10, T:0.24
Consensus pattern (21 bp):
ACCACCATGACCTCCTTGTCC
Found at i:7473009 original size:15 final size:15
Alignment explanation
Indices: 7472989--7473018 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7472979 ACCATGCCCG
*
7472989 CCACTACCGCCACCA
1 CCACTACCACCACCA
7473004 CCACTACCACCACCA
1 CCACTACCACCACCA
7473019 TGTCCTCCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.60, G:0.03, T:0.07
Consensus pattern (15 bp):
CCACTACCACCACCA
Found at i:7473052 original size:18 final size:18
Alignment explanation
Indices: 7473009--7473052 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7472999 CACCACCACT
7473009 ACCACCACCATGTCCTCC
1 ACCACCACCATGTCCTCC
**
7473027 ACTGCCACCATGTCCTCC
1 ACCACCACCATGTCCTCC
*
7473045 GCCACCAC
1 ACCACCAC
7473053 TACCACTACC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.55, G:0.09, T:0.16
Consensus pattern (18 bp):
ACCACCACCATGTCCTCC
Found at i:7473119 original size:30 final size:30
Alignment explanation
Indices: 7473079--7473149 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
7473069 GCCTTGTCCT
*
7473079 CCACCATGTCCACC-ACTACCACCACCACTA
1 CCACCCTGTCCACCGACT-CCACCACCACTA
* * * *
7473109 CCGCCGTGTCCTCCGCCTCCACCACCACTA
1 CCACCCTGTCCACCGACTCCACCACCACTA
7473139 CCACCCTGTCC
1 CCACCCTGTCC
7473150 TCCTCTATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.20, C:0.56, G:0.08, T:0.15
Consensus pattern (30 bp):
CCACCCTGTCCACCGACTCCACCACCACTA
Found at i:7473134 original size:42 final size:42
Alignment explanation
Indices: 7473040--7473143 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
7473030 GCCACCATGT
* * *
7473040 CCTCCGCCACCACTACCACTACCACTACCGCCTTGTCCTCCA
1 CCTCCACCACCACTACCACCACCACTACCGCCGTGTCCTCCA
** *
7473082 CCAT-GTCCACCACTACCACCACCACTACCGCCGTGTCCTCCG
1 CC-TCCACCACCACTACCACCACCACTACCGCCGTGTCCTCCA
7473124 CCTCCACCACCACTACCACC
1 CCTCCACCACCACTACCACC
7473144 CTGTCCTCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 51 0.96
43 1 0.02
ACGTcount: A:0.20, C:0.56, G:0.08, T:0.16
Consensus pattern (42 bp):
CCTCCACCACCACTACCACCACCACTACCGCCGTGTCCTCCA
Found at i:7473266 original size:72 final size:72
Alignment explanation
Indices: 7473055--7473241 Score: 302
Period size: 72 Copynumber: 2.6 Consensus size: 72
7473045 GCCACCACTA
* * * *
7473055 CCACTACCACTACCGCCTTGTCCTCCACCATGTCCACCACTACCACCACCACTACCGCCGTGTCC
1 CCACCACCACTACCACCTTGTCCTCCACCATGTCCACCACTACCACCGCCACTACTGCCGTGTCC
7473120 TCCGCCT
66 TCCGCCT
* * *
7473127 CCACCACCACTACCACCCTGTCCTCCTCTATGTCCACCACTACCACCGCCACTACTGCCGTGTCC
1 CCACCACCACTACCACCTTGTCCTCCACCATGTCCACCACTACCACCGCCACTACTGCCGTGTCC
*
7473192 TCCGCTT
66 TCCGCCT
7473199 CCACCACCACTACCACCTTGTCCTCCACCATGTCCACCACTAC
1 CCACCACCACTACCACCTTGTCCTCCACCATGTCCACCACTAC
7473242 TGCCTTGTCC
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 104 1.00
ACGTcount: A:0.19, C:0.52, G:0.09, T:0.20
Consensus pattern (72 bp):
CCACCACCACTACCACCTTGTCCTCCACCATGTCCACCACTACCACCGCCACTACTGCCGTGTCC
TCCGCCT
Found at i:7476036 original size:37 final size:37
Alignment explanation
Indices: 7475988--7476063 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
7475978 TAGTCCAATT
7475988 ATTAAAACATTGAATATGACACTATGAGATTTTGGCA
1 ATTAAAACATTGAATATGACACTATGAGATTTTGGCA
7476025 ATTAAAACATTGAATATGACACTATGAGATTTTGGCA
1 ATTAAAACATTGAATATGACACTATGAGATTTTGGCA
7476062 AT
1 AT
7476064 CTCGAAGTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (37 bp):
ATTAAAACATTGAATATGACACTATGAGATTTTGGCA
Found at i:7476613 original size:20 final size:19
Alignment explanation
Indices: 7476588--7476626 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
7476578 TCTTTTTATT
7476588 ATCTTTAAATTTAAGATTTA
1 ATCTTTAAATTTAA-ATTTA
*
7476608 ATCTTTATATTTAAATTTA
1 ATCTTTAAATTTAAATTTA
7476627 TAATATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (19 bp):
ATCTTTAAATTTAAATTTA
Found at i:7476635 original size:26 final size:26
Alignment explanation
Indices: 7476586--7476635 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7476576 GGTCTTTTTA
* *
7476586 TTATCTTTAAATTTAAGATTTAATCT
1 TTATATTTAAATTTAAGATATAATCT
7476612 TTATATTTAAATTTATA-ATATAAT
1 TTATATTTAAATTTA-AGATATAAT
7476636 TAGATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (26 bp):
TTATATTTAAATTTAAGATATAATCT
Found at i:7476659 original size:7 final size:8
Alignment explanation
Indices: 7476639--7476663 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7476629 ATATAATTAG
7476639 ATTTTTAT
1 ATTTTTAT
7476647 ATTTTTAT
1 ATTTTTAT
7476655 ATTTTTAT
1 ATTTTTAT
7476663 A
1 A
7476664 AATTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATTTTTAT
Found at i:7479956 original size:3 final size:3
Alignment explanation
Indices: 7479948--7479973 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7479938 ACAAGAGGCA
7479948 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
7479974 AAAGCGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7480386 original size:15 final size:14
Alignment explanation
Indices: 7480349--7480391 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
7480339 ATTTGTCACT
*
7480349 AAAATATTTTTTAA
1 AAAATATTTTTTTA
*
7480363 AAAATATTTTTTTG
1 AAAATATTTTTTTA
7480377 AAAATGATTTATTTT
1 AAAAT-ATTT-TTTT
7480392 TCTGATGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 17 0.68
15 4 0.16
16 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (14 bp):
AAAATATTTTTTTA
Found at i:7488792 original size:27 final size:28
Alignment explanation
Indices: 7488755--7488894 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
7488745 AGCATGGCTG
* *
7488755 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7488781 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
7488809 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
7488836 TCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* * *
7488863 CCAGGT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7488890 CCAGA
1 CCAGA
7488895 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.05
27 80 0.78
28 17 0.17
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:7489325 original size:8 final size:8
Alignment explanation
Indices: 7489310--7489346 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
7489300 AAAATACCGA
7489310 CTTTTCGG
1 CTTTTCGG
*
7489318 CATTTCGG
1 CTTTTCGG
7489326 CTTTTCGG
1 CTTTTCGG
7489334 CTTTTCGG
1 CTTTTCGG
7489342 CTTTT
1 CTTTT
7489347 ACCAATCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.03, C:0.24, G:0.22, T:0.51
Consensus pattern (8 bp):
CTTTTCGG
Found at i:7490557 original size:26 final size:26
Alignment explanation
Indices: 7490521--7490630 Score: 170
Period size: 26 Copynumber: 4.2 Consensus size: 26
7490511 CATGAAATTC
7490521 TTATCATGAAACATTTACCTAATCC-A
1 TTATCATGAAACATTTACCTAA-CCTA
*
7490547 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
7490573 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
7490599 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCTA
7490625 TTATCA
1 TTATCA
7490631 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 2 0.03
26 76 0.95
27 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:7491984 original size:22 final size:22
Alignment explanation
Indices: 7491958--7492003 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7491948 CCCAATTTTA
* *
7491958 TTTTATTTTATTTATTTTTAAT
1 TTTTATATTATTCATTTTTAAT
7491980 TTTTATATTATTCATTTTTAAT
1 TTTTATATTATTCATTTTTAAT
7492002 TT
1 TT
7492004 ACTAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTATATTATTCATTTTTAAT
Found at i:7492011 original size:22 final size:22
Alignment explanation
Indices: 7491953--7492011 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7491943 ATCACCCCAA
* *
7491953 TTTT-ATTT-TATTTTATTTAT
1 TTTTAATTTCTATATTATTCAT
*
7491973 TTTTAATTTTTATATTATTCAT
1 TTTTAATTTCTATATTATTCAT
7491995 TTTTAATTTACTA-ATTA
1 TTTTAATTT-CTATATTA
7492012 ATTAATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 4 0.12
21 4 0.12
22 23 0.70
23 2 0.06
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTAATTTCTATATTATTCAT
Found at i:7492063 original size:15 final size:15
Alignment explanation
Indices: 7492037--7492073 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
7492027 ATTCTTATAC
7492037 TTATATTTTTAATTTT
1 TTATA-TTTTAATTTT
7492053 TTATATTTTAATTTT
1 TTATATTTTAATTTT
7492068 TTATAT
1 TTATAT
7492074 ACTTTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATATTTTAATTTT
Found at i:7492107 original size:22 final size:21
Alignment explanation
Indices: 7492082--7492141 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
7492072 ATACTTTTAT
7492082 TATTTTTTTATTTTGCTATTCC
1 TATTTTTTT-TTTTGCTATTCC
* *
7492104 TATTTTTTTCTTTT--TTTTCG
1 TATTTTTTT-TTTTGCTATTCC
7492124 TA-TTTTTTTTTTGCTATT
1 TATTTTTTTTTTTGCTATT
7492142 ATCATTACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
18 4 0.12
19 6 0.19
20 9 0.28
22 13 0.41
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75
Consensus pattern (21 bp):
TATTTTTTTTTTTGCTATTCC
Found at i:7492185 original size:18 final size:18
Alignment explanation
Indices: 7492162--7492196 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7492152 TTACCTTTTA
7492162 AGTTTATTGA-TATTATTG
1 AGTTTATT-ATTATTATTG
7492180 AGTTTATTATTATTATT
1 AGTTTATTATTATTATT
7492197 ATTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (18 bp):
AGTTTATTATTATTATTG
Found at i:7497499 original size:15 final size:15
Alignment explanation
Indices: 7497479--7497518 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
7497469 TATCACATAT
7497479 ATGACTAAAGTTACC
1 ATGACTAAAGTTACC
*
7497494 ATGACTAAAGTTATC
1 ATGACTAAAGTTACC
7497509 ATGACTAAAG
1 ATGACTAAAG
7497519 GGAATGGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (15 bp):
ATGACTAAAGTTACC
Found at i:7499372 original size:16 final size:16
Alignment explanation
Indices: 7499351--7499381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7499341 TTTCAAGCAC
7499351 TGTGTATATATATATG
1 TGTGTATATATATATG
*
7499367 TGTGTATGTATATAT
1 TGTGTATATATATAT
7499382 TTTTTTCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (16 bp):
TGTGTATATATATATG
Found at i:7503238 original size:22 final size:21
Alignment explanation
Indices: 7503208--7503254 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
7503198 TACAAATTAA
7503208 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
7503230 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
7503251 ATCT
1 ATCT
7503255 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:7503260 original size:19 final size:19
Alignment explanation
Indices: 7503225--7503303 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7503215 AGATTACAAG
7503225 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
7503246 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
7503263 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7503282 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7503301 ATC
1 ATC
7503304 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:7503280 original size:36 final size:38
Alignment explanation
Indices: 7503225--7503297 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
7503215 AGATTACAAG
7503225 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
7503263 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
7503298 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:7503312 original size:36 final size:35
Alignment explanation
Indices: 7503226--7503313 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
7503216 GATTACAAGA
7503226 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
7503262 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
7503298 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
7503314 ATATTTTCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:7504484 original size:19 final size:19
Alignment explanation
Indices: 7504443--7504502 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 19
7504433 AAATTTTTAT
7504443 AATTTTAAAAATATATATTTGA
1 AATTTT-AAAA-ATAT-TTTGA
*
7504465 AATTTTATAAATATTTTG-
1 AATTTTAAAAATATTTTGA
7504483 AATTTTAAAAATTATTTTGA
1 AATTTTAAAAA-TATTTTGA
7504503 TTTTTTTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 10 0.29
19 11 0.32
20 4 0.12
21 3 0.09
22 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
AATTTTAAAAATATTTTGA
Found at i:7504507 original size:19 final size:19
Alignment explanation
Indices: 7504443--7504506 Score: 78
Period size: 18 Copynumber: 3.3 Consensus size: 19
7504433 AAATTTTTAT
7504443 AATTTTAAAAATATATATTTG
1 AATTTTAAAAAT-TAT-TTTG
*
7504464 AAATTTTATAAA-TATTTTG
1 -AATTTTAAAAATTATTTTG
7504483 AATTTTAAAAATTATTTTG
1 AATTTTAAAAATTATTTTG
7504502 -ATTTT
1 AATTTT
7504507 TTTGTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 15 0.38
19 11 0.28
20 3 0.08
22 10 0.26
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAATTATTTTG
Found at i:7505845 original size:2 final size:2
Alignment explanation
Indices: 7505838--7505864 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7505828 TTATTGACTT
7505838 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7505865 GCGTGTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7506608 original size:2 final size:2
Alignment explanation
Indices: 7506603--7506629 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7506593 ACACACACAA
7506603 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7506630 ATAAGAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7508196 original size:21 final size:21
Alignment explanation
Indices: 7508172--7508219 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
7508162 TCCTGTTCTG
*
7508172 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTACTGC
7508193 CTCCGCCTCCCTCGCTACTGC
1 CTCCGCCTCCCTCGCTACTGC
7508214 CTCCGC
1 CTCCGC
7508220 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.58, G:0.17, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTACTGC
Found at i:7508807 original size:18 final size:18
Alignment explanation
Indices: 7508775--7508812 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7508765 TACAATATAG
7508775 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
7508794 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
7508811 TA
1 TA
7508813 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:7512342 original size:15 final size:15
Alignment explanation
Indices: 7512324--7512355 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7512314 AAATAATAAT
*
7512324 TTATATATATTTATC
1 TTATATACATTTATC
7512339 TTATATACATTTATC
1 TTATATACATTTATC
7512354 TT
1 TT
7512356 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:7512345 original size:2 final size:2
Alignment explanation
Indices: 7512281--7512333 Score: 67
Period size: 2 Copynumber: 28.0 Consensus size: 2
7512271 ACCACTTTTC
*
7512281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7512321 A- AT TT AT AT AT AT
1 AT AT AT AT AT AT AT
7512334 TTATCTTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
1 3 0.07
2 42 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7513536 original size:40 final size:40
Alignment explanation
Indices: 7513400--7513647 Score: 318
Period size: 40 Copynumber: 6.1 Consensus size: 40
7513390 GTTATATGAC
* ** *
7513400 TTTTAGCGGCGTTTTACCAAAAACGCATCTAATGCTTCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGC-TCTGT
7513441 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG-T
7513482 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
7513522 TTTTAGCGGTGTTTTACCAAAAGCACCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * **
7513562 TTTTAGCGGTGTTTTTACTAAAA-CGCCGCTGTTGCTCTGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGT
** * *
7513602 TTTTAGCGGCGTTTTAAAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
7513642 ATTTTA
1 -TTTTA
7513648 AAATTTTTGC
Statistics
Matches: 189, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
39 9 0.05
40 93 0.49
41 87 0.46
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:7515775 original size:2 final size:2
Alignment explanation
Indices: 7515770--7515802 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7515760 ACACACACAC
*
7515770 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7515803 AGTATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7515949 original size:45 final size:43
Alignment explanation
Indices: 7515887--7515994 Score: 114
Period size: 45 Copynumber: 2.5 Consensus size: 43
7515877 AAAAAGGAGG
* * *
7515887 CATAAAACAATTCAAAATAATAAGACAGTTTTAAA-TAAATAAT
1 CATAAAACAATTTAAAATAATAAGACA-ATTTAAAGTAAAGAAT
*
7515930 ACATAAAACAATTTTAAAATGAA-AAGGCAATTTAAAGTAAAGAAT
1 -CATAAAACAA-TTTAAAAT-AATAAGACAATTTAAAGTAAAGAAT
*
7515975 -ATAAAACAATTTATAATAAT
1 CATAAAACAATTTAAAATAAT
7515995 TAATATATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.04
42 7 0.13
43 9 0.16
44 16 0.29
45 19 0.35
46 2 0.04
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.28
Consensus pattern (43 bp):
CATAAAACAATTTAAAATAATAAGACAATTTAAAGTAAAGAAT
Found at i:7516305 original size:22 final size:19
Alignment explanation
Indices: 7516261--7516307 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
7516251 TCTTAAAATT
*
7516261 AATAATAATAAAGGTTTAC
1 AATAATAATAAAGGTTTAA
7516280 AATAGATAATAAAAGAGTTTAA
1 AATA-ATAAT-AAAG-GTTTAA
7516302 AATAAT
1 AATAAT
7516308 TTTCATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 5 0.21
21 6 0.25
22 9 0.38
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (19 bp):
AATAATAATAAAGGTTTAA
Found at i:7516607 original size:3 final size:3
Alignment explanation
Indices: 7516599--7516679 Score: 94
Period size: 3 Copynumber: 26.7 Consensus size: 3
7516589 TGATATGTTC
*
7516599 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -GT AGAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT
* *
7516645 ACAT AAA AAT GAT -AT AAT AAT AAT AAT AAT AAT AA
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7516680 ACTAAGGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
2 3 0.04
3 58 0.85
4 6 0.09
5 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7521263 original size:22 final size:23
Alignment explanation
Indices: 7521238--7521302 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
7521228 ATAAGTAAAG
7521238 AAAATATAATAACAATAATAG-A
1 AAAATATAATAACAATAATAGTA
* * *
7521260 AAAATACAACAATAATAATAGTA
1 AAAATATAATAACAATAATAGTA
7521283 AAAGATATAATAAC-ATAATA
1 AAA-ATATAATAACAATAATA
7521303 ATATAATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 18 0.51
23 10 0.29
24 7 0.20
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (23 bp):
AAAATATAATAACAATAATAGTA
Found at i:7521276 original size:3 final size:3
Alignment explanation
Indices: 7521270--7521514 Score: 114
Period size: 3 Copynumber: 82.3 Consensus size: 3
7521260 AAAATACAAC
* * * *
7521270 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
7521313 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
7521357 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
7521402 AAT AAT AAT AAT AAT AAT AAT CAT -CT ATT AAGT TAT AAT GAA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT -AAT AAT
* * * *
7521447 AAT GAT AAT GAT GAT -AT ATT AGAT AAT AAT AAT AA- AAT AAT AAGT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA-T
* *
7521492 AAC AAT AAT AAAT TAT AAT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT A
7521515 GTGATGAGAA
Statistics
Matches: 182, Mismatches: 42, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
2 18 0.10
3 147 0.81
4 17 0.09
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7521533 original size:16 final size:16
Alignment explanation
Indices: 7521514--7521545 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7521504 TTATAATAAT
7521514 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7521530 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7521546 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7521678 original size:16 final size:16
Alignment explanation
Indices: 7521649--7521686 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7521639 TATACGTATG
*
7521649 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
7521664 AAAATATAATAATAGT
1 AAAATATAATAATAGT
7521680 AATAATA
1 AA-AATA
7521687 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:7521796 original size:3 final size:3
Alignment explanation
Indices: 7521788--7521838 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
7521778 ACACTACCAT
7521788 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7521836 ATA
1 ATA
7521839 TAGAAATACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7521947 original size:3 final size:3
Alignment explanation
Indices: 7521933--7521974 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
7521923 AAATACACAC
7521933 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7521975 TTAAAATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7522690 original size:10 final size:9
Alignment explanation
Indices: 7522664--7522689 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7522654 GGGGATTAGG
7522664 TTTTTTTTC
1 TTTTTTTTC
7522673 TTTTTTTTC
1 TTTTTTTTC
7522682 TTTTTTTT
1 TTTTTTTT
7522690 TTGGGAGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7522972 original size:44 final size:43
Alignment explanation
Indices: 7522908--7522993 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
7522898 TGAGTTCTTG
*
7522908 ATCTGCTTCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGGATGCCAA
** *
7522951 ATCTGCTGTCTTCAA-CTTGTTCCTTATAAACACAGGTATGCCA
1 ATCTGCT-TCTTCAATC-TGTTCCCCATAAACACAGGGATGCCA
7522994 TGCTGAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 8 0.22
44 29 0.78
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (43 bp):
ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGGATGCCAA
Found at i:7523803 original size:206 final size:205
Alignment explanation
Indices: 7523047--7523836 Score: 1151
Period size: 205 Copynumber: 3.9 Consensus size: 205
7523037 AGATCTATTT
* * * * * * *
7523047 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * * *
7523112 GTGAAAGCCAAATCAACTATG-ATTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * *
7523176 GGATCCGCTTCAGCATAAACATCCGAATGTGAGATCTGCTATGTG-CTACTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
*
7523240 AGATGCCGAA
196 AGATGCCAAA
* * *
7523250 CTTCGATTCGTTCTCTGACGATACAGAGATGAAAAATCATCTTAGATTTGCTTTC-TCGTAATCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAATCA
* *
7523314 CGTGAAAGCCAAATCAACTATGTCTTCAATTTGTTCCTTGTGAACACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* **
7523379 TGGATCTGCTTCAG--TGAAATTGTCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAG
130 TGGATCCGCTTCAGCAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAG
7523442 TGAAGATGCCAAA
193 TGAAGATGCCAAA
* * * *
7523455 CTTCGATTCGTTCTTTGACAATATAGAGACGACAAATCAACTTAGATTTACTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* *
7523520 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * **
7523585 GGATCTGCTTCAGCGA-AATCATCTGAAGGTAAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCCGCTTCAGC-ATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
*
7523649 AAGATACCAAA
195 AAGATGCCAAA
*
7523660 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTTAGATTTGCTTCATCGTAATCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATC-TTAGATTTGCTTCATCGTAATCA
* *
7523725 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
7523790 TGGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGT
130 TGGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGT
7523837 GGCCTATTAC
Statistics
Matches: 528, Mismatches: 48, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
202 1 0.00
203 78 0.15
204 75 0.14
205 246 0.47
206 128 0.24
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
GTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:7523818 original size:411 final size:408
Alignment explanation
Indices: 7523047--7523836 Score: 1183
Period size: 411 Copynumber: 1.9 Consensus size: 408
7523037 AGATCTATTT
* * * * * *
7523047 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCAACTTAGATTTACTTCAACGTAAGCAC
* * *
7523112 GTGAAAGCCAAATCAACTATGATTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAACCATCTTG
66 GTGAAAGCCAAATCAACTATGATTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* *
7523177 GATCCGCTTCAGCATAAACATCCGAATGTGAGATCTGCTATGTGCTACTCTCCATCAAAGTGAAG
131 GATCCGCTTCAGCATAAACATCCGAAGGTAAGATCTGCTATGTGCTACTCTCCATCAAAGTGAAG
* * *
7523242 ATGCCGAACTTCGATTCGTTCTCTGACGATACAGAGATGAAAAATCATCTTAGATTTGCTTTCTC
196 ATACCAAACTTCGATTCGTTCTCTGACGATACAGAGACGAAAAATCATCTTAGATTTGCTTTCTC
* *
7523307 GTAATCACGTGAAAGCCAAATCAACTATGTCTTCAATTTGTTCCTTGTGAACACAAGGATGCCAA
261 GTAATCACGTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAA
* **
7523372 ACCATCTTGGATCTGCTTCAGTGAAATTGTCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
326 ACCATCTTGGATCCGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
7523437 CAAAGTGAAGATGCCAAA
391 CAAAGTGAAGATGCCAAA
** * * *
7523455 CTTCGATTCGTTCTTTGACAATATAGAGACGACAAATCAACTTAGATTTACTTCATCGTAATCAC
1 CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCAACTTAGATTTACTTCAACGTAAGCAC
* * *
7523520 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATG-ATTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * *
7523585 GGATCTGCTTCAGCGA-AATCATCTGAAGGTAAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
130 GGATCCGCTTCAGC-ATAAACATCCGAAGGTAAGATCTGCTATGTG-CTACTCTCCATCAAAGTG
*
7523649 AAGATACCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTTAGATTTGC-T
193 AAGATACCAAACTTCGATTCGTTCTCTGACGATACAGAGACGAAAAATCATC-TTAGATTTGCTT
* *
7523713 TCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGAT
257 TC-TCGTAATCACGTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGAT
7523778 GCCAAACCATCTTGGATCCGCTTCAGCAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGT
321 GCCAAACCATCTTGGATCCGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGT
7523837 GGCCTATTAC
Statistics
Matches: 341, Mismatches: 34, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
408 74 0.22
409 76 0.22
410 69 0.20
411 118 0.35
412 3 0.01
413 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (408 bp):
CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCAACTTAGATTTACTTCAACGTAAGCAC
GTGAAAGCCAAATCAACTATGATTCAATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
GATCCGCTTCAGCATAAACATCCGAAGGTAAGATCTGCTATGTGCTACTCTCCATCAAAGTGAAG
ATACCAAACTTCGATTCGTTCTCTGACGATACAGAGACGAAAAATCATCTTAGATTTGCTTTCTC
GTAATCACGTGAAAGCCAAATCAACTATGTCTTCAATTTGCTCCTTGTAAACACAAGGATGCCAA
ACCATCTTGGATCCGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
CAAAGTGAAGATGCCAAA
Found at i:7531828 original size:15 final size:14
Alignment explanation
Indices: 7531786--7531835 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7531776 ATAACTTTGA
*
7531786 ATGCAAATGATGTG
1 ATGCAAATGATGAG
7531800 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
7531815 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
7531829 ATGCAAA
1 ATGCAAA
7531836 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:7535650 original size:22 final size:23
Alignment explanation
Indices: 7535625--7535689 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
7535615 ATAAGTAAAG
7535625 AAAATATAATAACAATAATAG-A
1 AAAATATAATAACAATAATAGTA
* * *
7535647 AAAATACAACAATAATAATAGTA
1 AAAATATAATAACAATAATAGTA
7535670 AAAGATATAATAAC-ATAATA
1 AAA-ATATAATAACAATAATA
7535690 ATATAATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 18 0.51
23 10 0.29
24 7 0.20
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (23 bp):
AAAATATAATAACAATAATAGTA
Found at i:7535663 original size:3 final size:3
Alignment explanation
Indices: 7535657--7535896 Score: 95
Period size: 3 Copynumber: 80.3 Consensus size: 3
7535647 AAAATACAAC
* * * *
7535657 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
7535700 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
7535744 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
7535789 AAT -AT AAT AAT AAT AAT AAT -CT ATT AAGT TAT AAT GAA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT -AAT AAT AAT
* * * * * *
7535833 GAT AAT GAT GAT ATTT AGAT AAT AAT AGT AA- AAT AAT AAGT AAC AAT
1 AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
*
7535880 AAT AAAT TAT AAT AAT A
1 AAT -AAT AAT AAT AAT A
7535897 GTGATGAGAA
Statistics
Matches: 174, Mismatches: 45, Indels: 36
0.68 0.18 0.14
Matches are distributed among these distances:
2 18 0.10
3 137 0.79
4 19 0.11
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7535915 original size:16 final size:16
Alignment explanation
Indices: 7535896--7535927 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7535886 TTATAATAAT
7535896 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7535912 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7535928 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7536061 original size:16 final size:15
Alignment explanation
Indices: 7536032--7536074 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
7536022 TATACGTATG
*
7536032 AAAAATAATGATAGT
1 AAAAATAATAATAGT
7536047 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
7536063 AATAATAATAAT
1 AAAAATAATAAT
7536075 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:7536181 original size:3 final size:3
Alignment explanation
Indices: 7536173--7536199 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7536163 ACACTACCAT
7536173 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
7536200 TAGAAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7536306 original size:3 final size:3
Alignment explanation
Indices: 7536292--7536327 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
7536282 AAATACACAC
7536292 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7536328 TTAAAATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7546367 original size:30 final size:30
Alignment explanation
Indices: 7546333--7546391 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
7546323 CTAGAAAATT
7546333 AAATTTAATCAATGTGATAAAATATGACTA
1 AAATTTAATCAATGTGATAAAATATGACTA
7546363 AAATTTAATCAATGTGATAAAATATGACT
1 AAATTTAATCAATGTGATAAAATATGACT
7546392 TCACCATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (30 bp):
AAATTTAATCAATGTGATAAAATATGACTA
Found at i:7549118 original size:18 final size:18
Alignment explanation
Indices: 7549084--7549125 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7549074 GTATTTTTTT
*
7549084 ATTATTATATATTTTGTA
1 ATTATTATATATGTTGTA
7549102 ATTATTA-ATATAGTTGTA
1 ATTATTATATAT-GTTGTA
7549120 ACTTAT
1 A-TTAT
7549126 AGTATCCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (18 bp):
ATTATTATATATGTTGTA
Found at i:7552771 original size:49 final size:50
Alignment explanation
Indices: 7552673--7552771 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 50
7552663 AAAGAAAAAT
* * * *
7552673 AAAACTCATGTTTAATTCTTGTTTATTTATGACATAGTTAGTAAATAAATAA
1 AAAACTCATGTTTAATTC-T-TTCACTTATGACATAATTAATAAATAAATAA
7552725 AAAACTCATGTTTAATTC-TTCACTTATGACATAATTAATAAATAAAT
1 AAAACTCATGTTTAATTCTTTCACTTATGACATAATTAATAAATAAAT
7552772 TCCCTAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 25 0.58
52 18 0.42
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (50 bp):
AAAACTCATGTTTAATTCTTTCACTTATGACATAATTAATAAATAAATAA
Found at i:7556715 original size:25 final size:26
Alignment explanation
Indices: 7556687--7556735 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
7556677 CAATTTTTAA
*
7556687 AAAATAAAAATA-AAATTATTTTCTT
1 AAAATAAAAATAGAAAATATTTTCTT
*
7556712 AAAATGAAAATAGAAAATATTTTC
1 AAAATAAAAATAGAAAATATTTTC
7556736 AAAAATCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAATAAAAATAGAAAATATTTTCTT
Found at i:7556740 original size:25 final size:24
Alignment explanation
Indices: 7556681--7556741 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
7556671 TTTTTTCAAT
* *
7556681 TTTTAAAAAATAAAAATAAAATTA
1 TTTTCAAAAATAAAAATAAAAATA
* *
7556705 TTTTCTTAAAATGAAAATAGAAAATA
1 TTTTC-AAAAATAAAAATA-AAAATA
7556731 TTTTCAAAAAT
1 TTTTCAAAAAT
7556742 CAAACCTACC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 4 0.13
25 16 0.53
26 10 0.33
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (24 bp):
TTTTCAAAAATAAAAATAAAAATA
Found at i:7559510 original size:11 final size:11
Alignment explanation
Indices: 7559494--7559540 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
7559484 TTATTTACAA
7559494 AATCATATATT
1 AATCATATATT
7559505 AATCATATATT
1 AATCATATATT
** *
7559516 -ATTTTAAATTT
1 AATCATATA-TT
7559527 AATCATATATT
1 AATCATATATT
7559538 AAT
1 AAT
7559541 TTAGAAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
10 5 0.18
11 18 0.64
12 5 0.18
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (11 bp):
AATCATATATT
Done.