Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 290 of 425
Found at i:89934423 original size:31 final size:31
Alignment explanation
Indices: 89934385--89934445 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
89934375 AAAACACTCA
89934385 GTGATTTGAGTGAATCTTAGTGA-GATGTAAT
1 GTGATTTGAGTGAATC-TAGTGATGATGTAAT
89934416 GTGATTTGAGTGAATCTAGTGATGATGTAA
1 GTGATTTGAGTGAATCTAGTGATGATGTAA
89934446 ATCTGATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.38
Consensus pattern (31 bp):
GTGATTTGAGTGAATCTAGTGATGATGTAAT
Found at i:89937507 original size:14 final size:13
Alignment explanation
Indices: 89937482--89937514 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
89937472 CATTTCAGAT
89937482 TCAGAT-TACAAA
1 TCAGATATACAAA
89937494 GTCAGATATACAAA
1 -TCAGATATACAAA
89937508 TCAGATA
1 TCAGATA
89937515 ATCGGAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.24
Consensus pattern (13 bp):
TCAGATATACAAA
Found at i:89938546 original size:27 final size:26
Alignment explanation
Indices: 89938498--89938557 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
89938488 GCGAGGCTGC
*
89938498 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
89938525 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
89938551 CAGATAT
1 CAGATAT
89938558 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:89938652 original size:27 final size:26
Alignment explanation
Indices: 89938604--89938655 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
89938594 GCGAGGCTGC
*
89938604 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
89938630 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
89938656 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:89945914 original size:27 final size:26
Alignment explanation
Indices: 89945884--89945943 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
89945874 ACAAGGCTGC
*
89945884 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
89945911 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
89945937 CAGATAT
1 CAGATAT
89945944 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:89946034 original size:27 final size:26
Alignment explanation
Indices: 89945986--89946037 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
89945976 GCGAGGCTGC
*
89945986 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
89946012 CAGATATATGTGGCGATGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
89946038 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:89952141 original size:27 final size:28
Alignment explanation
Indices: 89952104--89952216 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 28
89952094 AGCATGGCTG
* *
89952104 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
89952130 CCAGATACAGATA-TCGTGGTAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
89952157 CCAGAAATAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
** *
89952185 CTGGAT-CAAATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
89952212 CCAGA
1 CCAGA
89952217 ACGCTTCCTC
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 5 0.07
27 50 0.71
28 15 0.21
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:89954116 original size:17 final size:17
Alignment explanation
Indices: 89954082--89954116 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
89954072 TAAATATACG
*
89954082 AAATAATAATAGTAATA
1 AAATAATAATAATAATA
*
89954099 AAATAATAATAATGATA
1 AAATAATAATAATAATA
89954116 A
1 A
89954117 CATCCAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AAATAATAATAATAATA
Found at i:89957421 original size:39 final size:40
Alignment explanation
Indices: 89957321--89957503 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
89957311 TCGAATGATG
* *
89957321 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
89957360 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
89957399 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
89957439 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
89957479 ACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
89957504 AAACGAGTAG
Statistics
Matches: 126, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 47 0.37
40 72 0.57
41 7 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:89957457 original size:79 final size:81
Alignment explanation
Indices: 89957321--89957502 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
89957311 TCGAATGATG
* *
89957321 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
89957384 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
89957399 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
89957461 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
89957479 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
89957503 TAAACGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 4 0.04
79 67 0.74
80 19 0.21
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:89957526 original size:79 final size:77
Alignment explanation
Indices: 89957354--89957537 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 77
89957344 GTGCTAAGTG
* *
89957354 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
***
89957419 CATTGGTGCGAGTT
64 CATTGAAACGAGTT
* *
89957433 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
89957497 GGCATTTAAACGAG-T
62 GGCATTGAAACGAGTT
*
89957512 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
89957538 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGAAACGAGTT
Found at i:89967186 original size:6 final size:6
Alignment explanation
Indices: 89967175--89967207 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
89967165 TCCTCCTATC
*
89967175 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
89967208 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:89967213 original size:18 final size:18
Alignment explanation
Indices: 89967175--89967220 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
89967165 TCCTCCTATC
* **
89967175 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTCAA
89967193 TTTTTATTTTCATTTCAA
1 TTTTTATTTTCATTTCAA
89967211 -TTTTATTTTC
1 TTTTTATTTTC
89967221 TTTTGAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTCATTTCAA
Found at i:89970152 original size:13 final size:13
Alignment explanation
Indices: 89970134--89970162 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
89970124 TTTTGTTTAA
89970134 TTAGTTAATTAGT
1 TTAGTTAATTAGT
89970147 TTAGTTAATTAGT
1 TTAGTTAATTAGT
89970160 TTA
1 TTA
89970163 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:89971370 original size:47 final size:46
Alignment explanation
Indices: 89971315--89971445 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 46
89971305 CATAATCGAT
* *
89971315 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACT-TATCCTGC
1 AAGTACCTATATCATGGCCCATAGCCAAATCAAGGTAACTCCA--CT-C
*
89971363 -AGTACCTATATCATGGCCCAAAGCCAAATCAAGGTAACTCCACTC
1 AAGTACCTATATCATGGCCCATAGCCAAATCAAGGTAACTCCACTC
*
89971408 AAAATACCTATATCATGGCCCATAGCCAAATCAAGGTA
1 -AAGTACCTATATCATGGCCCATAGCCAAATCAAGGTA
89971446 TTATTCGTAC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
45 1 0.01
46 2 0.03
47 71 0.95
48 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (46 bp):
AAGTACCTATATCATGGCCCATAGCCAAATCAAGGTAACTCCACTC
Found at i:89971485 original size:50 final size:46
Alignment explanation
Indices: 89971318--89971486 Score: 124
Period size: 47 Copynumber: 3.5 Consensus size: 46
89971308 AATCGATAAG
* * * *** *
89971318 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACT-TATCCTGCAG
1 TACCAATATCATGGCCCA-AGCCAAATCAAGGTAACTCCA-CCCAAAA
* *
89971365 TACCTATATCATGGCCCAAAGCCAAATCAAGGTAACTCCACTCAAAA
1 TACCAATATCATGGCCC-AAGCCAAATCAAGGTAACTCCACCCAAAA
* * * * *
89971412 TACCTATATCATGGCCCATAGCCAAATCAAGGTATTATTCGTACCCGAAG
1 TACCAATATCATGGCCCA-AGCCAAATCAAGGTA--ACTC-CACCCAAAA
*
89971462 TGCCAATATCATGGCCCGAAGCCAA
1 TACCAATATCATGGCCC-AAGCCAA
89971487 TTCATTGAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
46 1 0.01
47 68 0.67
48 2 0.02
49 3 0.03
50 26 0.26
51 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (46 bp):
TACCAATATCATGGCCCAAGCCAAATCAAGGTAACTCCACCCAAAA
Found at i:89975102 original size:31 final size:31
Alignment explanation
Indices: 89975064--89975127 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
89975054 CCTTTTCATA
89975064 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
89975095 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
89975126 TT
1 TT
89975128 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:89975370 original size:24 final size:24
Alignment explanation
Indices: 89975333--89975485 Score: 211
Period size: 24 Copynumber: 6.4 Consensus size: 24
89975323 CTAGAGGCCT
89975333 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
*
89975357 ACGCCCTTTCAATAACTGGGGCATA
1 A-GCCCTTTTAATAACTGGGGCATA
89975382 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
89975405 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
89975429 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * * *
89975453 AGACCTTTTGATAATTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
89975477 AGCCCTTTT
1 AGCCCTTTT
89975486 TCACTTCCTC
Statistics
Matches: 120, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
23 23 0.19
24 92 0.77
25 5 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:89975561 original size:20 final size:20
Alignment explanation
Indices: 89975536--89975595 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
89975526 TATGATTACC
89975536 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
89975556 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
89975576 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
89975596 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:89975566 original size:11 final size:11
Alignment explanation
Indices: 89975536--89975590 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
89975526 TATGATTACC
89975536 TCATGTGCATA
1 TCATGTGCATA
*
89975547 TCA--TACATA
1 TCATGTGCATA
89975556 TCATGTGCATA
1 TCATGTGCATA
* *
89975567 TCA--TACATT
1 TCATGTGCATA
89975576 TCATGTGCATA
1 TCATGTGCATA
89975587 TCAT
1 TCAT
89975591 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:89978777 original size:56 final size:56
Alignment explanation
Indices: 89978679--89978788 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 56
89978669 GACCATGGCA
**
89978679 TCGATATATGTGTGCGAGTAAGACCACGTTTTATATGTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACGTTGGATATGTTGGCATCGATATGTGACT
**
89978735 TCGATATATGTGTGCGAGTAAGACCTTGTCTAGGATA-G-TGGCATCGATATGTGA
1 TCGATATATGTGTGCGAGTAAGACCACGT-T-GGATATGTTGGCATCGATATGTGA
89978789 TTACATGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
56 43 0.90
57 2 0.04
58 3 0.06
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTGGATATGTTGGCATCGATATGTGACT
Found at i:89988878 original size:10 final size:10
Alignment explanation
Indices: 89988826--89988926 Score: 51
Period size: 10 Copynumber: 9.4 Consensus size: 10
89988816 ATGGGGGAAA
89988826 AAAAGAAGAG
1 AAAAGAAGAG
*
89988836 -AAAGTAGATG
1 AAAAGAAGA-G
* *
89988846 AAGAGAAAAG
1 AAAAGAAGAG
*
89988856 AAAAGAAAAG
1 AAAAGAAGAG
*
89988866 AAAAGAAGGG
1 AAAAGAAGAG
89988876 AAAGAAGAAGAAG
1 -AA-AAGAAG-AG
*
89988889 AAAGGAAGTAG
1 AAAAGAAG-AG
*
89988900 ATGAAGAGAGGAG
1 A--AA-AGAAGAG
*
89988913 AAAAGAAAAG
1 AAAAGAAGAG
89988923 AAAA
1 AAAA
89988927 TAGAAGAAGA
Statistics
Matches: 69, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
9 7 0.10
10 28 0.41
11 17 0.25
12 8 0.12
13 6 0.09
14 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (10 bp):
AAAAGAAGAG
Found at i:89988878 original size:15 final size:14
Alignment explanation
Indices: 89988822--89988889 Score: 54
Period size: 15 Copynumber: 5.0 Consensus size: 14
89988812 GACTATGGGG
89988822 GAAA-AAAAGAAGA
1 GAAAGAAAAGAAGA
* *
89988835 GAAAGTAGATGAAGA
1 GAAAG-AAAAGAAGA
*
89988850 GAAA-AGAA-AAGA
1 GAAAGAAAAGAAGA
*
89988862 -AAAGAAAAGAAGG
1 GAAAGAAAAGAAGA
89988875 GAAAGAAGAAGAAGA
1 GAAAGAA-AAGAAGA
89988890 AAGGAAGTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
11 3 0.07
12 7 0.16
13 10 0.23
14 6 0.14
15 17 0.40
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (14 bp):
GAAAGAAAAGAAGA
Found at i:89989327 original size:23 final size:23
Alignment explanation
Indices: 89989297--89989343 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
89989287 TACTAATATA
89989297 TGGTTACAATTAATTATAAACCT
1 TGGTTACAATTAATTATAAACCT
89989320 TGGTTACAATTAATTATAAACCT
1 TGGTTACAATTAATTATAAACCT
89989343 T
1 T
89989344 ACCTGCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (23 bp):
TGGTTACAATTAATTATAAACCT
Found at i:89989949 original size:15 final size:15
Alignment explanation
Indices: 89989912--89989940 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
89989902 ATTTCCTATC
89989912 TAATAATAATAATTA
1 TAATAATAATAATTA
89989927 TAATAATAATAATT
1 TAATAATAATAATT
89989941 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:89991898 original size:40 final size:41
Alignment explanation
Indices: 89991853--89992019 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
89991843 CGGAATATAA
*
89991853 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
89991893 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
89991933 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
89991973 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
89992012 CCGGATAT
1 CCGGATAT
89992020 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:89992868 original size:17 final size:19
Alignment explanation
Indices: 89992845--89992890 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
89992835 AAGAAGCATG
89992845 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
89992863 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
89992881 AATCATGCTC
1 AATCATGCTC
89992891 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:90003734 original size:27 final size:27
Alignment explanation
Indices: 90003653--90003810 Score: 124
Period size: 27 Copynumber: 5.9 Consensus size: 27
90003643 TTAGTTTACC
* * * *
90003653 AAATTACTGAAATACCC-CCAGTTATA
1 AAATTACCGAAATACCCTCAATTTGTA
** * *
90003679 AAATTACC-AAAGTACCCAGAGTTTATA
1 AAATTACCGAAA-TACCCTCAATTTGTA
* * *
90003706 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
90003733 AAATTATCGAAATACCCTCAATTTGAA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
90003760 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
90003787 AAATTATC-AAAGTACCCTCGAATT
1 AAATTACCGAAA-TACCCTC-AATT
90003811 ACAAAATTAC
Statistics
Matches: 104, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
25 3 0.03
26 15 0.14
27 80 0.77
28 6 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAATTTGTA
Found at i:90003816 original size:27 final size:25
Alignment explanation
Indices: 90003732--90003819 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 25
90003722 CTCGATTTGT
*
90003732 AAAATTATCGAAATACCCTCAATTTGA
1 AAAATTATC-AAATACCCTCAACTT-A
* *
90003759 AAAATTACTGAAATACCCTCAACTTGT
1 AAAATTA-TCAAATACCCTCAACTT-A
90003786 AAAATTATCAAAGTACCCTCGAA-TTA
1 AAAATTATCAAA-TACCCTC-AACTTA
90003812 CAAAATTA
1 -AAAATTA
90003820 CTGTTTTACC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
26 4 0.08
27 45 0.87
28 3 0.06
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.28
Consensus pattern (25 bp):
AAAATTATCAAATACCCTCAACTTA
Found at i:90003817 original size:54 final size:54
Alignment explanation
Indices: 90003648--90003822 Score: 162
Period size: 54 Copynumber: 3.3 Consensus size: 54
90003638 ATACCTTAGT
* * * * * * *
90003648 TTACCAAATTACTGAAATACCC-CCAGTTATAAAATTACCAAAGTACCC-AGAGT
1 TTACAAAATTACTGAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGA-A
* ** * * *
90003701 TTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC-AA
1 TTACAAAATTACTGAAATACCCTCAACTTGTAAAATTATC-AAAGTACCCTCGAA
90003754 TTTGA-AAAATTACTGAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
1 -TT-ACAAAATTACTGAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
90003809 TTACAAAATTACTG
1 TTACAAAATTACTG
90003823 TTTTACCCTT
Statistics
Matches: 98, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
53 21 0.21
54 71 0.72
55 6 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
TTACAAAATTACTGAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
Found at i:90004259 original size:27 final size:27
Alignment explanation
Indices: 90003799--90004250 Score: 566
Period size: 27 Copynumber: 16.8 Consensus size: 27
90003789 ATTATCAAAG
*
90003799 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90003826 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90003853 TACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90003880 TACCCTCGATTGATAGAATTACT-TTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90003906 TACCCTCGATTTACAGAATTACT-ATT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90003932 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90003959 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90003986 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
90004013 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90004040 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90004067 TACCTTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90004094 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
90004121 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90004148 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90004175 TACCCTCGACTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90004202 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90004229 TACCTTCAATTTATAAAATTAC
1 TACCCTCGATTTACAAAATTAC
90004251 CAATTTACCC
Statistics
Matches: 376, Mismatches: 48, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
26 47 0.12
27 329 0.88
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:90004541 original size:27 final size:26
Alignment explanation
Indices: 90004497--90004547 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
90004487 CTCGCTACAA
*
90004497 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
90004524 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
90004548 GGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:90004798 original size:6 final size:6
Alignment explanation
Indices: 90004767--90004848 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
90004757 TTGCATTCAC
* *
90004767 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
90004816 -TCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
90004849 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:90004846 original size:31 final size:31
Alignment explanation
Indices: 90004767--90004839 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
90004757 TTGCATTCAC
* *
90004767 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
90004798 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
90004829 ATTCTGATTCT
1 ATTCTGATTCT
90004840 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:90006903 original size:27 final size:27
Alignment explanation
Indices: 90006822--90006976 Score: 149
Period size: 27 Copynumber: 5.8 Consensus size: 27
90006812 TTAGTTTACC
* * * *
90006822 AAATTACTGAAATACCC-CCAGTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
90006848 AAATTACC-AAAGTACCC-CCAGTTTATA
1 AAATTACCGAAA-TACCCTCGA-TTTGTA
*
90006875 AAATTACCGAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
90006902 AAATTACCGAAATACCCTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* *
90006929 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
90006956 AAATTATC-AAAGTACCCTCGA
1 AAATTACCGAAA-TACCCTCGA
90006977 ATTACAAAAT
Statistics
Matches: 112, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.03
26 19 0.17
27 84 0.75
28 6 0.05
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:90006985 original size:27 final size:27
Alignment explanation
Indices: 90006817--90007017 Score: 83
Period size: 27 Copynumber: 7.5 Consensus size: 27
90006807 ATACGTTAGT
* * * *
90006817 TTACCAAATTACTGAAATACCC-CCAG
1 TTACAAAATTACTCAAATACCCTCGAA
* * *
90006843 TTATAAAATTAC-CAAAGTACCC-CCAGT
1 TTACAAAATTACTCAAA-TACCCTCGA-A
* * *
90006870 TTATAAAATTAC-CGAAATATCCTCGAT
1 TTACAAAATTACTC-AAATACCCTCGAA
** *
90006897 TTGTAAAATTAC-CGAAATACCCTC-AGT
1 TTACAAAATTACTC-AAATACCCTCGA-A
** * *
90006924 TTGTAAAATTACTGAAATACCCTCGAC
1 TTACAAAATTACTCAAATACCCTCGAA
**
90006951 TTGTAAAATTA-TCAAAGTACCCTCGAA
1 TTACAAAATTACTCAAA-TACCCTCGAA
**** *
90006978 TTACAAAATTACTGTTTTACCCTCGAT
1 TTACAAAATTACTCAAATACCCTCGAA
90007005 TTACAAAATTACT
1 TTACAAAATTACT
90007018 ATTTTACCCT
Statistics
Matches: 147, Mismatches: 19, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
25 3 0.02
26 23 0.16
27 114 0.78
28 7 0.05
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
TTACAAAATTACTCAAATACCCTCGAA
Found at i:90006986 original size:54 final size:54
Alignment explanation
Indices: 90006814--90006991 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
90006804 AGAATACGTT
* * * * *
90006814 AGTTTACCAAATTACTGAAATACCC-CCAGTTATAAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
* * * *
90006867 AGTTTATAAAATTACCGAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTC
** *
90006921 AGTTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
*
90006975 -GAATTACAAAATTACTG
1 AG-TTTACAAAATTACTG
90006992 TTTTACCCTC
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
53 25 0.24
54 77 0.73
55 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:90007022 original size:27 final size:27
Alignment explanation
Indices: 90006968--90007432 Score: 588
Period size: 27 Copynumber: 17.2 Consensus size: 27
90006958 ATTATCAAAG
*
90006968 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90006995 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90007022 TACCCTCGATTGACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
90007049 TACCCTCGATTGAGAGAATTACTTTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
90007076 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
** *
90007103 TACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90007130 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90007157 TCCCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
90007184 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90007211 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90007238 TACCTTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
90007265 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
90007292 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
90007319 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
90007346 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
90007373 TACCCTCGATTTACAGAAGTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
90007400 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
90007427 TACCCT
1 TACCCT
90007433 TAGGGTGTTA
Statistics
Matches: 389, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 389 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:90007753 original size:2 final size:2
Alignment explanation
Indices: 90007746--90007775 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
90007736 GCTTCATCAC
90007746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90007776 GTTCTGGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90007979 original size:6 final size:6
Alignment explanation
Indices: 90007948--90008029 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
90007938 TTGCATTCAC
* *
90007948 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
90007997 -TCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
90008030 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:90008027 original size:31 final size:31
Alignment explanation
Indices: 90007948--90008020 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
90007938 TTGCATTCAC
* *
90007948 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
90007979 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
90008010 ATTCTGATTCT
1 ATTCTGATTCT
90008021 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:90009621 original size:49 final size:49
Alignment explanation
Indices: 90009563--90009690 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
90009553 ACATCTAAGT
* * *
90009563 CGATGCCATGTCTCAAACAGGTCTTACACTGACT-TCCATATATTGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCT-CATATATCG-GTGC
* * * *
90009612 CGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
90009661 CGATGCCATGTCCCAGACAGGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
90009691 AGCACACATA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 1 0.01
49 67 0.97
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:90009681 original size:98 final size:97
Alignment explanation
Indices: 90009513--90009690 Score: 241
Period size: 98 Copynumber: 1.8 Consensus size: 97
90009503 AGGGTACGAT
* * * *
90009513 GCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACACATCTAAGTCGATGCCATGTCTCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACACATCGAAGTCGATGCCATGTCCCA
90009578 AACAGGTCTTACACTGACTTCCATATATTGAG
66 AACAGGTCTTACACTGACTTCCATATATTGAG
* * * **
90009610 GCCGATGCCATGTCCCAGATA-GGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACA-C-ATCGAAGTCGATGCCATGTCC
*
90009674 CAGACAGGTCTTACACT
64 CAAACAGGTCTTACACT
90009691 AGCACACATA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
96 17 0.25
97 19 0.28
98 33 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACACATCGAAGTCGATGCCATGTCCCA
AACAGGTCTTACACTGACTTCCATATATTGAG
Found at i:90015033 original size:19 final size:21
Alignment explanation
Indices: 90015009--90015060 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
90014999 AGTTAATTAA
90015009 ATTATTTAATTTA-ATT-TAT
1 ATTATTTAATTTATATTGTAT
90015028 ATTATTTAA-TTATATTGTAT
1 ATTATTTAATTTATATTGTAT
*
90015048 ATT-TTGAATTTAT
1 ATTATTTAATTTAT
90015061 TTTGAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 16 0.55
20 10 0.34
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
ATTATTTAATTTATATTGTAT
Found at i:90017233 original size:34 final size:34
Alignment explanation
Indices: 90017162--90017234 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
90017152 GCATTTCTGT
* **
90017162 TACTATTACTGAAATGGGCTAAGGCCCACACTGA
1 TACTGTTACTGAAATGGGCTAAGGCCCACACCAA
*
90017196 TACTGTTACTGTAATGGGCTAAGGCCCTA-ACCAA
1 TACTGTTACTGAAATGGGCTAAGGCCC-ACACCAA
90017230 TACTG
1 TACTG
90017235 GACTGTTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAGGCCCACACCAA
Found at i:90027720 original size:26 final size:24
Alignment explanation
Indices: 90027689--90027746 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 24
90027679 GCTATGATCG
*
90027689 GTAAGCTCCTCTTGAGCT-AATGGATA
1 GTAAGCTCCTATTGAGCTGAA---ATA
90027715 GTAAGCT-CTATTGAGCTGAAATA
1 GTAAGCTCCTATTGAGCTGAAATA
90027738 GTAAGCTCC
1 GTAAGCTCC
90027747 AACGAGCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 10 0.34
24 1 0.03
25 9 0.31
26 9 0.31
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
GTAAGCTCCTATTGAGCTGAAATA
Found at i:90027753 original size:23 final size:24
Alignment explanation
Indices: 90027702--90027769 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
90027692 AGCTCCTCTT
* * **
90027702 GAGCTAATGGATAGTAAGCTCTATT
1 GAGCTAA-GAATAGTAAGCTCCAAC
*
90027727 GAGCTGA-AATAGTAAGCTCCAAC
1 GAGCTAAGAATAGTAAGCTCCAAC
*
90027750 GAGCTAAGAACAGTAAGCTC
1 GAGCTAAGAATAGTAAGCTC
90027770 TTACGAGTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
23 18 0.51
24 11 0.31
25 6 0.17
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (24 bp):
GAGCTAAGAATAGTAAGCTCCAAC
Found at i:90032011 original size:79 final size:78
Alignment explanation
Indices: 90031876--90032094 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
90031866 GAATCACATA
* * * * *
90031876 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
90031940 TAACTCGTACAAATG
64 TAACTCGCACAAATG
* * *
90031955 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAATTAG
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
90032019 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
90032034 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
90032095 TATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 60 0.51
80 43 0.37
81 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
ACTCGCACAAATG
Found at i:90032023 original size:39 final size:40
Alignment explanation
Indices: 90031902--90032095 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
90031892 GGATATAGCT
* *
90031902 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
90031942 ACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
90031982 ACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
90032021 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
90032061 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
90032096 ATCATTCGAA
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.24
40 67 0.51
41 27 0.21
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:90032813 original size:2 final size:2
Alignment explanation
Indices: 90032806--90032833 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
90032796 TCATGTGCAA
90032806 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90032834 GCAAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90036412 original size:40 final size:40
Alignment explanation
Indices: 90036349--90036556 Score: 208
Period size: 40 Copynumber: 5.2 Consensus size: 40
90036339 CGGAATTTAA
* * *
90036349 CCGGATATAGCT-ACTCACTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
90036389 CCGGCTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
90036429 TCGGATTTAGTAACTCGCACCAATACATTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90036468 CCGGA-ATTAGTAACTCGCACCAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90036508 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90036549 CCGGATAT
1 CCGGATAT
90036557 CATTCGAATA
Statistics
Matches: 137, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 74 0.54
41 27 0.20
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90036485 original size:39 final size:40
Alignment explanation
Indices: 90036396--90036491 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 40
90036386 AGCCCGGCTA
* * * * * *
90036396 TAGTAACTCGTACAAATGCCTTCGGGACTTAACTCGGATT
1 TAGTAACTCGCACCAATACATTCGGGACTTAACCCGGAAT
*
90036436 TAGTAACTCGCACCAATACATTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACCAATACATTCGGGACTTAACCCGGAAT
90036475 TAGTAACTCGCACCAAT
1 TAGTAACTCGCACCAAT
90036492 GCCTTCGGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 27 0.55
40 22 0.45
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACCAATACATTCGGGACTTAACCCGGAAT
Found at i:90036513 original size:79 final size:81
Alignment explanation
Indices: 90036376--90036553 Score: 188
Period size: 79 Copynumber: 2.2 Consensus size: 81
90036366 CTCAAATGCC
* * * *
90036376 TTCGGGACATAGCCCGG-CTATAGTAACTCGTACAAATGCCTTCGGGACTTAACTCGGATTTAGT
1 TTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATATAGT
* *
90036440 AAC-TCGCACCAATA-CA
65 AACTTAGCA-CAAAAGCA
* *
90036456 TTCGGG-CTTAGCCCGGAATTAGTAACTCGCACCAATGCCTTC-GGATCTT-AGTCCGGATATAG
1 TTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CGGATATAG
* *
90036518 TCACTTAGCACAAAAGCC
64 TAACTTAGCACAAAAGCA
90036536 TTCGGGACTTAGCCCGGA
1 TTCGGGACTTAGCCCGGA
90036554 TATCATTCGA
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
78 5 0.06
79 48 0.59
80 18 0.22
81 11 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
TTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATATAGTA
ACTTAGCACAAAAGCA
Found at i:90042171 original size:28 final size:28
Alignment explanation
Indices: 90042130--90042183 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
90042120 CCAATTTAAT
90042130 TGTAACACCCCGTACCCGAGACCGTTGC
1 TGTAACACCCCGTACCCGAGACCGTTGC
* *
90042158 TGTAACACCTCGTACCCGAGTCCGTT
1 TGTAACACCCCGTACCCGAGACCGTT
90042184 ACCGGAGTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.37, G:0.20, T:0.22
Consensus pattern (28 bp):
TGTAACACCCCGTACCCGAGACCGTTGC
Found at i:90043067 original size:13 final size:13
Alignment explanation
Indices: 90043049--90043079 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
90043039 TGCCATATCT
90043049 AGAGTTCAACTAA
1 AGAGTTCAACTAA
90043062 AGAGTTCAACTAA
1 AGAGTTCAACTAA
90043075 AGAGT
1 AGAGT
90043080 ACCAAAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (13 bp):
AGAGTTCAACTAA
Found at i:90043577 original size:40 final size:40
Alignment explanation
Indices: 90043528--90043713 Score: 221
Period size: 40 Copynumber: 4.7 Consensus size: 40
90043518 ATCCACAAGT
* * * * ***
90043528 ACAATTGCCTTCAGGTCTTAACCCGGATTTGGTAACTTGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGC
90043568 ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGC
* * *
90043608 ACGAATGCCTTCGGGTCTCAGCCCGGATATAACAACTCGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGC
* * *
90043648 ACGAATGCCTTCGGGTCTTAGCCCGGATATGATC-ACTAGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATAT-AACAACTTGC
* *
90043688 ATAAATGCCTTCGGGACTTAGCCCGG
1 ACAAATGCCTTCGGGTCTTAGCCCGG
90043714 GTATCATTCA
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 127 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGC
Found at i:90046857 original size:40 final size:40
Alignment explanation
Indices: 90046806--90046995 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
90046796 AGATATAGCT
* * *
90046806 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTACAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
90046846 ACTCGCACAAATGCTTTCGGGACTTAACCCAGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTATAGTA
* *
90046886 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG--A-ATTAA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT-A
* * *
90046923 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
90046963 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
90046996 ATATCATTCG
Statistics
Matches: 122, Mismatches: 18, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
36 4 0.03
37 18 0.15
38 10 0.08
39 7 0.06
40 52 0.43
41 28 0.23
42 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:90053042 original size:49 final size:49
Alignment explanation
Indices: 90052964--90053410 Score: 786
Period size: 49 Copynumber: 9.1 Consensus size: 49
90052954 GTACATAATA
* *
90052964 ATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
90053013 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
90053062 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
90053111 ACATATGTGATGAGGCCTAATGGCCCATGCGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
90053160 ATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
90053209 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
90053258 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
90053307 ATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
90053356 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
90053405 ATATAT
1 ATATAT
90053411 ATGTGGTAAA
Statistics
Matches: 383, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 383 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:90058680 original size:40 final size:40
Alignment explanation
Indices: 90058558--90058724 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
90058548 GAATTTAACT
* * * *
90058558 GGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCTC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAACCC
*
90058598 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
* * **
90058638 GGATTTAGTAACTCGCACCAATGCCTTC-GGATCTTAGTCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
** * * *
90058678 GGATATAGTCATTTAGCACAAAAGCCTTCGGGACTTAGCCC
1 GGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAACCC
90058719 GGATAT
1 GGATAT
90058725 CATTCGAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 4 0.04
40 72 0.68
41 27 0.25
42 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
Found at i:90060946 original size:47 final size:47
Alignment explanation
Indices: 90060894--90061024 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
90060884 TACAATCGAT
* *
90060894 AAGTACATATACCAT-GCACCGTAGCCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGC-CCGTAGCCAAATCAAGGTAACTCATCCCG
* * * * *
90060941 GAGTACCTATACTATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* *
90060988 AAATACCTATACCATGGCCTGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
90061025 TTATTCGCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 70 0.97
48 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
Found at i:90067203 original size:42 final size:42
Alignment explanation
Indices: 90067141--90067255 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
90067131 AACTAAGAAG
* *
90067141 TCCGAACTTGTTGAGTGGTCCAAGTTCATGGGGTATG-GAGCA
1 TCCGAGCTTGTTGAGAGGTCCAAGTTCATGGGG-ATGTGAGCA
* **
90067183 TCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGTGAGCA
1 TCCGAGCTTGTTGAGAGGTCCAAGTTCA-TGGGGATGTGAGCA
* * * *
90067226 TCTGAGCTTATTGAGAGGTCCGAGTACATG
1 TCCGAGCTTGTTGAGAGGTCCAAGTTCATG
90067256 ATGGATGCGA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 29 0.48
43 31 0.52
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (42 bp):
TCCGAGCTTGTTGAGAGGTCCAAGTTCATGGGGATGTGAGCA
Found at i:90073460 original size:50 final size:50
Alignment explanation
Indices: 90073402--90073498 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
90073392 GTATTTGAAT
*
90073402 CATCAATAAATAATCATTTAATAAGTCTCATATCATTACTCAATTCTTAC
1 CATCAATAAATAATCATTTAATAAGTCTCATATCATTACACAATTCTTAC
90073452 CATCAATAAATAATCATTTAATAAGTCTCATATCATTACACAATTCT
1 CATCAATAAATAATCATTTAATAAGTCTCATATCATTACACAATTCT
90073499 AACCCATGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (50 bp):
CATCAATAAATAATCATTTAATAAGTCTCATATCATTACACAATTCTTAC
Found at i:90091699 original size:50 final size:50
Alignment explanation
Indices: 90091586--90091863 Score: 240
Period size: 50 Copynumber: 5.5 Consensus size: 50
90091576 CTGGTACGCA
* * * * * *
90091586 TAGTAGCCTACACTTAGTATTACACATGCGACC-AACAAT-TCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT-GATACATG
* *
90091635 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
* *** * * * *
90091685 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATCTGATACATG
* * *
90091736 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT-AGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA-TACATG
* * * * **
90091786 TAGTAGCTTGCACTTAGTACTACACACGTAACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACATG
*
90091838 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
90091864 TGTTTTCTCA
Statistics
Matches: 183, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
49 29 0.16
50 80 0.44
51 38 0.21
52 35 0.19
53 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
Found at i:90095678 original size:40 final size:40
Alignment explanation
Indices: 90095619--90095760 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
90095609 AAATTGAATG
* * *
90095619 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
90095659 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
90095699 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
90095739 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
90095761 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:90095761 original size:40 final size:39
Alignment explanation
Indices: 90095658--90095786 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
90095648 TGCTGGAAAT
* * *
90095658 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
90095698 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
90095738 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
90095778 TATATCCGG
1 TATATCCGG
90095787 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:90101263 original size:40 final size:40
Alignment explanation
Indices: 90101218--90101383 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
90101208 CGGAATATAA
90101218 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
90101258 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
90101298 CCGGAT-TAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
90101337 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
90101376 CCGGATAT
1 CCGGATAT
90101384 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 44 0.43
40 59 0.57
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:90101340 original size:39 final size:39
Alignment explanation
Indices: 90101234--90101342 Score: 123
Period size: 39 Copynumber: 2.7 Consensus size: 39
90101224 ATAATCACGT
* *
90101234 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAG-ACAACTA
* *
90101274 GCACGAATGCCTTCGGGCCTTAGCCCGGATTAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAGACAACTA
*
90101313 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGAT
90101343 ATAATTTCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.03
39 28 0.47
40 27 0.45
41 3 0.05
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTAGACAACTA
Found at i:90102228 original size:17 final size:19
Alignment explanation
Indices: 90102205--90102250 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
90102195 AAGAAGCATG
90102205 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
90102223 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
90102241 AATCATGCTC
1 AATCATGCTC
90102251 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:90114243 original size:80 final size:80
Alignment explanation
Indices: 90114159--90114307 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
90114149 TATGGTAACC
* * * *
90114159 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
90114223 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
90114239 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
90114304 CCGG
66 CCGG
90114308 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:90114249 original size:40 final size:38
Alignment explanation
Indices: 90114200--90114307 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
90114190 ATCACGATTT
*
90114200 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
90114240 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
90114280 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
90114308 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:90116709 original size:28 final size:28
Alignment explanation
Indices: 90116641--90116719 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
90116631 GAATCATTCG
* * *
90116641 ATATTTTGCACACTAATTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
90116669 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
90116697 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
90116720 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:90122135 original size:13 final size:13
Alignment explanation
Indices: 90122117--90122145 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90122107 TTTAGTTTAA
90122117 TTAGTTAATTAGT
1 TTAGTTAATTAGT
90122130 TTAGTTAATTAGT
1 TTAGTTAATTAGT
90122143 TTA
1 TTA
90122146 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:90127223 original size:6 final size:6
Alignment explanation
Indices: 90127209--90127263 Score: 87
Period size: 6 Copynumber: 9.5 Consensus size: 6
90127199 TCCTCCAATC
*
90127209 TTTTCA TTTTTA TTTTTA TTTTTA -TTTT- TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
90127255 TTTTTA TTT
1 TTTTTA TTT
90127264 CAATTTTATT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
5 8 0.17
6 38 0.83
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:90127243 original size:22 final size:22
Alignment explanation
Indices: 90127215--90127275 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 22
90127205 AATCTTTTCA
90127215 TTTTTATTTTTATTTTTATTTT
1 TTTTTATTTTTATTTTTATTTT
90127237 TTTTTATTTTTATTTTTATTTT
1 TTTTTATTTTTATTTTTATTTT
* *
90127259 TATTTCAATTTTATTTT
1 T-TTTTATTTTTATTTT
90127276 CTTTTGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 23 0.64
23 13 0.36
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTTATTTTTATTTTTATTTT
Found at i:90127246 original size:28 final size:28
Alignment explanation
Indices: 90127209--90127263 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
90127199 TCCTCCAATC
90127209 TTTTCATTTTTATTTTTATTTTTATTTT
1 TTTTCATTTTTATTTTTATTTTTATTTT
*
90127237 TTTTTATTTTTATTTTTATTTTTATTT
1 TTTTCATTTTTATTTTTATTTTTATTT
90127264 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.84
Consensus pattern (28 bp):
TTTTCATTTTTATTTTTATTTTTATTTT
Found at i:90130210 original size:13 final size:13
Alignment explanation
Indices: 90130192--90130220 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90130182 TTTAGTTTAA
90130192 TTAGTTAATTAGT
1 TTAGTTAATTAGT
90130205 TTAGTTAATTAGT
1 TTAGTTAATTAGT
90130218 TTA
1 TTA
90130221 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:90132879 original size:43 final size:43
Alignment explanation
Indices: 90132818--90133110 Score: 340
Period size: 43 Copynumber: 6.8 Consensus size: 43
90132808 TAGGATTTTT
* * *
90132818 GATATGTGATTTCGTGTAAGACCCTATTTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
*
90132861 GATATGTGATTACGTGTAAGACCGC-GTCTGGGAC-GTTGGCATA
1 GATATGTGATTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATC
* *
90132904 TATATGTGATTACGTGTAAGAACCTGTCTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * *
90132947 GATATGTGATTACGTGTGAGACCCTCTCTGGGATAGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * *
90132990 AATATGTGATTACGTGTAAGACCCTGTTTGGGACAGTGACATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * * * ** *
90133033 AATATGTGATTACGTGTATGACTAC-ATCTAAGACAATGGCATC
1 GATATGTGATTACGTGTAAGAC-CCTGTCTGGGACAGTGGCATC
* * *
90133076 GATATGTGATTACATGTAAGACCATGTGTGGGACA
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACA
90133111 TCGATGTAAG
Statistics
Matches: 209, Mismatches: 35, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
42 2 0.01
43 204 0.98
44 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
Found at i:90133117 original size:25 final size:25
Alignment explanation
Indices: 90133089--90133139 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
90133079 ATGTGATTAC
*
90133089 ATGTAAGACCATGTGTGGGACATCG
1 ATGTAAGACCATGTCTGGGACATCG
90133114 ATGTAAGACCATGTCTGGGACATCG
1 ATGTAAGACCATGTCTGGGACATCG
90133139 A
1 A
90133140 CATTGTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (25 bp):
ATGTAAGACCATGTCTGGGACATCG
Found at i:90140576 original size:176 final size:176
Alignment explanation
Indices: 90140265--90141218 Score: 1357
Period size: 176 Copynumber: 5.4 Consensus size: 176
90140255 ATGTGATGAA
* * * * * *
90140265 AGATAAGGCTGGTGGCTTAAATTTTCTCCATTGCCGATACATAGAGATAAGGTTTGCCTCTTCCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* *
90140330 ATCTGCTCCACTACTAT-TTAGGGAGATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTT
66 ATCTGCTCCACTACT-TCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
90140394 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
130 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * * * *
90140441 AGATACGGCTGGTAGTTTGAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCCTCTTTCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* ** *
90140506 ATCTGCTCCACTACTTCATAGGGAGATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTGCCTCA
66 ATCTGCTCCACTACTTCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
* * * * * *
90140571 GGAAGAGAAGACTTAATTTTTAGCCTGCTCTCTTACTACCTCAGAG
131 GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * *
90140617 AGATAAGCCT-ATGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCA
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
*
90140681 ATCTGCTCCACTACTGT-TTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCCC
66 ATCTGCTCCACTACT-TCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
90140745 TA-GAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
130 -AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* *
90140792 AGATAAGACTGGTGGCTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATC-TTC
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC-TCTTTC
* * * ** *
90140856 GATCTACTCCGCTGCAACTTCAGGGAGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCT
65 GATCTGCTCCACTACTTCTT-AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCT
*
90140921 CAGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTTAGAG
129 CAGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
*
90140969 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCTCTTTC-
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* * * * * *
90141033 AGTTTGCTCCACTACTGCTTAGGAAGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGCTGCCTC
66 A-TCTGCTCCACTACTTCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
*
90141098 AGGAAGATAGGACTCAA-TATTCAACCTGCTCTCTTGCTACCTCAGAG
130 AGGAAGATAAGACTCAACT-TTCAACCTGCTCTCTTGCTACCTCAGAG
90141145 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTC
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC-TCTTTC
*
90141209 GATCTACTCC
65 GATCTGCTCC
90141219 GCTGCAACTT
Statistics
Matches: 690, Mismatches: 75, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
175 153 0.22
176 375 0.54
177 162 0.23
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (176 bp):
AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
ATCTGCTCCACTACTTCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
Found at i:90140924 original size:45 final size:43
Alignment explanation
Indices: 90140349--90141151 Score: 201
Period size: 43 Copynumber: 18.3 Consensus size: 43
90140339 ACTACTATTT
* *
90140349 AGGGAGATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTT
1 AGGGAGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTC
* *
90140394 AGGAAGATAAGAC-TCAA-CTTTCAACCTGCTCTCTTGCTACCTC
1 AGGGAGATAAGACTTCAATC-TTCAATCTGCTC-CTTGCTACCTC
* * * * * *
90140437 AGAGAGATACGGCTGGT-AGT-TTGAATCTGCTCCATTG-T-CGATAC
1 AGGGAGATAAGACT--TCAATCTTCAATCTGCTCC-TTGCTAC-CT-C
* * * * * *
90140481 ATGGAGATAAGATTTGC-CTCTTTCGATCTGCTCC--ACTACTTC
1 AGGGAGATAAGACTT-CAATC-TTCAATCTGCTCCTTGCTACCTC
** *
90140523 ATAGGGAGATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTGCCTC
1 --AGGGAGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTC
* * * * ** *
90140570 AGGAAGAGAAGACTT-AATTTTTAGCCTGCTCTCTTACTACCTC
1 AGGGAGATAAGACTTCAATCTTCAATCTGCTC-CTTGCTACCTC
* * * *
90140613 AGAGAGATAAG-C--CTATGGCTTAAATCTGCTCCATTGC--CGATAC
1 AGGGAGATAAGACTTCAAT--CTTCAATCTGCTCC-TTGCTAC-CT-C
* ** * * *
90140656 ATGGAGATAAGA-TTCGCCTCTTCCAATCTGCTCC--ACTACTGTTT
1 AGGGAGATAAGACTTC-AATCTT-CAATCTGCTCCTTGCTAC--CTC
*
90140700 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCCC
1 AGGGAGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTC
* *
90140745 TA-GAAGATAAGAC-TCAA-CTTTCAACCTGCTCTCTTGCTACCTC
1 -AGGGAGATAAGACTTCAATC-TTCAATCTGCTC-CTTGCTACCTC
* ***** * * *
90140788 AGAGAGATAAGACTGGTGGCTTAAATCTGCTCCATTGCCA-ATAC
1 AGGGAGATAAGACTTCAATCTTCAATCTGCTCC-TTGCTACCT-C
* * * * * * *
90140832 ATGGAGATAAGA-TTCGCCATCTTCGATCTACTCCGCTGCAACTTC
1 AGGGAGATAAGACTT--CAATCTTCAATCTGCTCC-TTGCTACCTC
*
90140877 AGGGAGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
1 AGGGAGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTC
* * *
90140922 AGGAAGATAAGAC-TCAA-CTTTCAACCTGCTCTCTTGCTACCTT
1 AGGGAGATAAGACTTCAATC-TTCAATCTGCTC-CTTGCTACCTC
* * ***** * *
90140965 AGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGC--CGATAC
1 AGGGAGATAAGACTTCAATCTTCAATCTGCTCC-TTGCTAC-CT-C
* * * * * *
90141009 ATGGAGATAAGA-TTCACCTCTTTCAGTTTGCTCC--ACTACTGCTT
1 AGGGAGATAAGACTTCA-ATC-TTCAATCTGCTCCTTGCTAC--CTC
* * * *
90141053 AGGAAGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGCTGCCTC
1 AGGGAGATAA-GACTTCAATCTTCAATCTGC-TCCTTGCTACCTC
* * * *
90141098 AGGAAGATAGGAC-TCAATATTCAACCTGCTCTCTTGCTACCTC
1 AGGGAGATAAGACTTCAATCTTCAATCTGCTC-CTTGCTACCTC
*
90141141 AGAGAGATAAG
1 AGGGAGATAAG
90141152 GCTGGTGGCT
Statistics
Matches: 542, Mismatches: 142, Indels: 150
0.65 0.17 0.18
Matches are distributed among these distances:
41 3 0.01
42 23 0.04
43 191 0.35
44 142 0.26
45 155 0.29
46 14 0.03
47 14 0.03
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
AGGGAGATAAGACTTCAATCTTCAATCTGCTCCTTGCTACCTC
Found at i:90141106 original size:353 final size:353
Alignment explanation
Indices: 90140265--90141241 Score: 1457
Period size: 353 Copynumber: 2.8 Consensus size: 353
90140255 ATGTGATGAA
* * * * * *
90140265 AGATAAGGCTGGTGGCTTAAATTTTCTCCATTGCCGATACATAGAGATAAGGTTTGCCTC-TTCC
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCA
* * *
90140329 GATCTGCTCCACTACTATTTAGGGAGATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTT
66 G-TCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
* * *
90140394 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATACGGCTGGTAGTTT
130 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTT
* * * * *
90140459 GAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCC-TCTTTCGATCTGCTCCACT---AC
195 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTCGATCTACTCCGCTGCAAC
* * * *
90140520 TTCATAGGGAGATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTGCCTCAGGAAGAGAAGACTT
259 TTC--AGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTC
* * *
90140585 AATTTTTAGCCTGCTCTCTTACTACCTCAGAG
322 AACTTTCAACCTGCTCTCTTACTACCTCAGAG
* * *
90140617 AGATAAGCCT-ATGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCA
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCA
* *
90140681 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCCCT
66 GTCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC-
*
90140746 A-GAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTGGTGGCTT
130 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTT
*
90140810 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAACT
195 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAACT
* *
90140875 TCAGGGAGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAAC
260 TCAGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTCAAC
* *
90140940 TTTCAACCTGCTCTCTTGCTACCTTAGAG
325 TTTCAACCTGCTCTCTTACTACCTCAGAG
*
90140969 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCTCTTTCA
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCA
* * * * * *
90141034 GTTTGCTCCACTACTGCTTAGGAAGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGCTGCCTCA
66 GTCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
*
90141099 GGAAGATAGGACTCAA-TATTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTT
131 GGAAGATAAGACTCAACT-TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTT
90141163 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAACT
195 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAACT
90141228 TCAGGGAGACAAGA
260 TCAGGGAGACAAGA
90141242 ATTGACTTCA
Statistics
Matches: 566, Mismatches: 50, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
351 211 0.37
352 106 0.19
353 244 0.43
354 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (353 bp):
AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCA
GTCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTA
AATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAACTT
CAGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTCAACT
TTCAACCTGCTCTCTTACTACCTCAGAG
Found at i:90146466 original size:46 final size:46
Alignment explanation
Indices: 90146399--90146532 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
90146389 ATATATATAC
* * *
90146399 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
90146445 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
90146491 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
90146533 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:90146524 original size:47 final size:47
Alignment explanation
Indices: 90146462--90146605 Score: 243
Period size: 47 Copynumber: 3.1 Consensus size: 47
90146452 ACACATTTCG
* * * **
90146462 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
90146509 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
90146556 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
90146603 CAT
1 CAT
90146606 AAAATCCTAA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:90146606 original size:23 final size:23
Alignment explanation
Indices: 90146531--90146606 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
90146521 GGCCTTATCA
90146531 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
90146554 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
90146576 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
90146601 CACATA
1 CACATA
90146607 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:90156818 original size:29 final size:29
Alignment explanation
Indices: 90156785--90156857 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
90156775 GTGATGTGAT
90156785 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
90156814 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
90156843 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
90156858 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:90156873 original size:29 final size:30
Alignment explanation
Indices: 90156785--90156885 Score: 136
Period size: 29 Copynumber: 3.5 Consensus size: 30
90156775 GTGATGTGAT
90156785 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
90156814 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* ***
90156843 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
*
90156872 TGGCACTATGTGTG
1 TGGCACTAAGTGTG
90156886 AGGGCTTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 65 0.98
30 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:90158806 original size:40 final size:40
Alignment explanation
Indices: 90158757--90158973 Score: 337
Period size: 40 Copynumber: 5.5 Consensus size: 40
90158747 CCAGCATGAT
***
90158757 TGCTCTTCGGGACCCAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
90158797 TGCTCTTCGGGATTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
90158836 TGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
90158876 TGCTCTTCGGGATTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
90158916 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
90158956 TGCTCTTCGGGACTTAGC
1 TGCTCTTCGGGATTTAGC
90158974 TCGGCTATAC
Statistics
Matches: 162, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 39 0.24
40 123 0.76
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
Found at i:90161327 original size:46 final size:46
Alignment explanation
Indices: 90161260--90161393 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
90161250 ATATATATAC
* * *
90161260 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
90161306 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
90161352 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
90161394 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:90161385 original size:47 final size:47
Alignment explanation
Indices: 90161323--90161513 Score: 328
Period size: 47 Copynumber: 4.1 Consensus size: 47
90161313 ACACATTTCG
* * * *
90161323 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
90161370 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
90161417 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
90161464 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
90161511 CAT
1 CAT
90161514 AAAATCCTAA
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:90177410 original size:25 final size:25
Alignment explanation
Indices: 90177382--90177460 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
90177372 ACTCGGCCCT
90177382 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
90177407 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
90177429 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
90177454 ATCACAT
1 ATCACAT
90177461 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:90177510 original size:49 final size:49
Alignment explanation
Indices: 90177332--90177683 Score: 545
Period size: 49 Copynumber: 7.3 Consensus size: 49
90177322 CCCTTCGGGA
* * * * *
90177332 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90177379 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90177426 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90177473 CTTATCACGTATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90177522 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90177571 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90177622 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90177671 CTTATCACATATA
1 CTTATCACATATA
90177684 CCATCATGTA
Statistics
Matches: 288, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 92 0.32
49 146 0.51
51 49 0.17
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90177616 original size:100 final size:98
Alignment explanation
Indices: 90177332--90177683 Score: 545
Period size: 100 Copynumber: 3.6 Consensus size: 98
90177322 CCCTTCGGGA
* * * * * *
90177332 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
90177393 ACACTTTCACATTCATCACATTGGCCATTCGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
90177426 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
90177489 ACACTTTCACATTCATTACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
90177522 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
90177587 ATACACTTTCACATTCATCACATCGGCCATTAGGC
64 ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90177622 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
90177684 CCATCATGTA
Statistics
Matches: 238, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
93 1 0.00
94 46 0.19
96 44 0.18
98 52 0.22
100 95 0.40
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (98 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90179274 original size:2 final size:2
Alignment explanation
Indices: 90179267--90179295 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
90179257 GATAGTATGC
90179267 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90179296 TCCACGACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90181807 original size:40 final size:40
Alignment explanation
Indices: 90181745--90181922 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 40
90181735 CTTCTGGACC
* * *
90181745 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTT
* * * * * **
90181785 TAGCACGGGTATATCACTAGCACGAATGCTCATCGAGACT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTT
* *
90181825 TAGCCTGGATACATCACTAGCACGAATGCTCTTTGGGGTT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTT
* * * **
90181865 TAGCCCGGATACATCACTAGCATGAATGCTCATCGAGACT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTT
90181905 TAGCCCGGATACATCACT
1 TAGCCCGGATACATCACT
90181923 CTCAATTCCC
Statistics
Matches: 114, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTT
Found at i:90181849 original size:80 final size:80
Alignment explanation
Indices: 90181745--90181922 Score: 275
Period size: 80 Copynumber: 2.2 Consensus size: 80
90181735 CTTCTGGACC
* * * * *
90181745 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGGTATATCACTAGCACGA
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATACATCACTAGCACGA
90181810 ATGCTCATCGAGACT
66 ATGCTCATCGAGACT
* * * *
90181825 TAGCCTGGATACATCACTAGCACGAATGCTCTTTGGGGTTTAGCCCGGATACATCACTAGCATGA
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATACATCACTAGCACGA
90181890 ATGCTCATCGAGACT
66 ATGCTCATCGAGACT
90181905 TAGCCCGGATACATCACT
1 TAGCCCGGATACATCACT
90181923 CTCAATTCCC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 88 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATACATCACTAGCACGA
ATGCTCATCGAGACT
Found at i:90183423 original size:25 final size:25
Alignment explanation
Indices: 90183395--90183473 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
90183385 ACTCGGCCCT
90183395 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
90183420 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
90183442 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
90183467 ATCACAT
1 ATCACAT
90183474 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:90183523 original size:49 final size:49
Alignment explanation
Indices: 90183345--90183696 Score: 554
Period size: 49 Copynumber: 7.3 Consensus size: 49
90183335 CCATTCGGGA
* * * * *
90183345 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90183392 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90183439 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90183486 CTTATCACATATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90183535 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90183584 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90183635 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90183684 CTTACCACATATA
1 CTTATCACATATA
90183697 CCATCATGTA
Statistics
Matches: 289, Mismatches: 10, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 92 0.32
49 147 0.51
51 49 0.17
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90183628 original size:100 final size:98
Alignment explanation
Indices: 90183345--90183696 Score: 554
Period size: 100 Copynumber: 3.6 Consensus size: 98
90183335 CCATTCGGGA
* * * * * *
90183345 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
90183406 ACACTTTCACATTCATCACATTGGCCATTCGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
90183439 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
90183502 ACACTTTCACATTCATTACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
90183535 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
90183600 ATACACTTTCACATTCATCACATCGGCCATTAGGC
64 ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90183635 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
90183697 CCATCATGTA
Statistics
Matches: 239, Mismatches: 11, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
93 1 0.00
94 46 0.19
96 44 0.18
98 52 0.22
100 96 0.40
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (98 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90186561 original size:51 final size:53
Alignment explanation
Indices: 90186450--90186590 Score: 150
Period size: 51 Copynumber: 2.7 Consensus size: 53
90186440 ATACATACCA
* * *
90186450 GTAGCTTCGATCACATGTGTGGTACTAAGTGCAA-GCCACTATGTGTAAGAGAT
1 GTAGCTTTGATCACAAGTGTGGTACTATGTG-AAGGCCACTATGTGTAAGAGAT
* *
90186503 G-A-TTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGA-AT
1 GTAGCTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAGAGAT
* * *
90186552 GTAGCTTTGA-CTACAAGGGTGGTACTTTGTGCAGGCCAC
1 GTAGCTTTGATC-ACAAGTGTGGTACTATGTGAAGGCCAC
90186591 CGGGTATCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
49 3 0.04
50 8 0.11
51 62 0.83
52 1 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
GTAGCTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAGAGAT
Found at i:90197094 original size:51 final size:51
Alignment explanation
Indices: 90197018--90197251 Score: 267
Period size: 51 Copynumber: 4.6 Consensus size: 51
90197008 CCGTTCTGCG
*
90197018 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
*
90197069 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
* * * **** * * *
90197120 TCACGTGTGTAATACTAAGTGTAGGCTACTATGTGATTTAGATTGA--TAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCG-TACCCATTAACTTCGA
* * * * * *
90197170 TCGCATATGTAGTACTAAGTGCAGGCTACTATGTGTACCCGTTAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
90197221 TCACGTGTGTAGTACTAAGTAG-AGGCTACTA
1 TCACGTGTGTAGTACTAAGT-GCAGGCTACTA
90197252 CATGTATCAG
Statistics
Matches: 152, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
49 4 0.03
50 32 0.21
51 110 0.72
52 6 0.04
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
Found at i:90197309 original size:101 final size:101
Alignment explanation
Indices: 90197069--90197301 Score: 310
Period size: 101 Copynumber: 2.3 Consensus size: 101
90197059 TTAACTTCGA
* *
90197069 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCATTAACTTCGATCACGTGTGTAATA
* * *
90197134 CTAAGTGTAGGCTACTATGTGATTTAGATTGATAGG
66 CTAAGTGTAGGCTACTATGTGATTCAGATGGATAAG
* * * * * *
90197170 TCGCATATGTAGTACTAAGTGCAGGCTACTATGTGTACCCGTTAACTTTGATCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCATTAACTTCGATCACGTGTGTAATA
*
90197235 CTAAGTAG-AGGCTACTACATGT-A-TCAGATGGTTAAG
66 CTAAGT-GTAGGCTACT--ATGTGATTCAGATGGATAAG
90197271 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
90197302 CATGTACCAG
Statistics
Matches: 114, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
101 108 0.95
102 2 0.02
103 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCATTAACTTCGATCACGTGTGTAATA
CTAAGTGTAGGCTACTATGTGATTCAGATGGATAAG
Found at i:90197330 original size:50 final size:50
Alignment explanation
Indices: 90197162--90197361 Score: 188
Period size: 50 Copynumber: 4.0 Consensus size: 50
90197152 GTGATTTAGA
* ** *
90197162 TTGATAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATGTGTACC-CG
1 TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGG
* * * * * * *
90197211 TTAACTTTGATCACGTGTGTAGTACTAAGTAG-AGGCTACTACATGTATCAGA
1 TTGA--TAGGTCGCATGTGTAGTACTAAGT-GCAGGCTACTACATGTACCAGG
* * * * *
90197263 TGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGG
1 TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGG
* * *
90197313 TTGATAGGTTGCATGTGTAGTACTAAGTGCAAGCTACTATATGTACCAG
1 TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG
90197362 ACAGCTTCGG
Statistics
Matches: 119, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
49 4 0.03
50 80 0.67
51 33 0.28
52 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGG
Found at i:90199756 original size:15 final size:15
Alignment explanation
Indices: 90199736--90199772 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
90199726 TATTTTCTTC
*
90199736 TGGATTTCTTTATGT
1 TGGATTTCTATATGT
*
90199751 TGGATTTCTATATTT
1 TGGATTTCTATATGT
90199766 TGGATTT
1 TGGATTT
90199773 TTCCGTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.19, T:0.59
Consensus pattern (15 bp):
TGGATTTCTATATGT
Found at i:90203048 original size:13 final size:13
Alignment explanation
Indices: 90203030--90203059 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
90203020 ATTATTCATT
*
90203030 TTTTAACATATTA
1 TTTTAACATAGTA
90203043 TTTTAACATAGTA
1 TTTTAACATAGTA
90203056 TTTT
1 TTTT
90203060 GAACTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTTAACATAGTA
Found at i:90203746 original size:22 final size:22
Alignment explanation
Indices: 90203718--90203775 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 22
90203708 TTAAACTTTA
90203718 TATTTTACATATTTTTTAT-TTT
1 TATTTTA-ATATTTTTTATGTTT
90203740 TATTTT-AT-TTATTTTATGTTT
1 TATTTTAATATT-TTTTATGTTT
*
90203761 TATTTCAAATATTTT
1 TATTT-TAATATTTT
90203776 GCGAGTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.07
20 8 0.27
21 8 0.27
22 6 0.20
23 4 0.13
24 2 0.07
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (22 bp):
TATTTTAATATTTTTTATGTTT
Found at i:90203752 original size:15 final size:16
Alignment explanation
Indices: 90203718--90203765 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
90203708 TTAAACTTTA
*
90203718 TATTTTACATATTT-TT
1 TATTTTATAT-TTTATT
90203734 TATTTT-TATTTTATT
1 TATTTTATATTTTATT
*
90203749 TATTTTATGTTTTATT
1 TATTTTATATTTTATT
90203765 T
1 T
90203766 CAAATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 3 0.11
15 10 0.36
16 15 0.54
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (16 bp):
TATTTTATATTTTATT
Found at i:90203773 original size:21 final size:20
Alignment explanation
Indices: 90203731--90203775 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
90203721 TTTACATATT
* **
90203731 TTTTATTTTTATTTTATTTA
1 TTTTATTTTTATTTCAAATA
90203751 TTTTATGTTTTATTTCAAATA
1 TTTTAT-TTTTATTTCAAATA
90203772 TTTT
1 TTTT
90203776 GCGAGTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTATTTTTATTTCAAATA
Found at i:90207847 original size:12 final size:12
Alignment explanation
Indices: 90207816--90207857 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
90207806 AGAAAAGTTG
90207816 GAACAAATGC-A
1 GAACAAATGCAA
*
90207827 GAAAGAAATGCAA
1 G-AACAAATGCAA
90207840 GAACAAATGCAA
1 GAACAAATGCAA
*
90207852 GCACAA
1 GAACAA
90207858 CTAGCTAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 1 0.04
12 23 0.88
13 2 0.08
ACGTcount: A:0.57, C:0.17, G:0.19, T:0.07
Consensus pattern (12 bp):
GAACAAATGCAA
Found at i:90210250 original size:26 final size:26
Alignment explanation
Indices: 90210219--90210280 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
90210209 CAAAGCTCTG
* *
90210219 CACATTACTACTAGATGCAAAGGATA
1 CACATTACCACCAGATGCAAAGGATA
* *
90210245 TACATTACCACCAGATGCAAAGGGTA
1 CACATTACCACCAGATGCAAAGGATA
90210271 CACATTACCA
1 CACATTACCA
90210281 GGAGTCTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (26 bp):
CACATTACCACCAGATGCAAAGGATA
Found at i:90212866 original size:19 final size:19
Alignment explanation
Indices: 90212842--90212879 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
90212832 TGATATATTA
90212842 CCTCAATAAGAAATTCACT
1 CCTCAATAAGAAATTCACT
90212861 CCTCAATAAGAAATTCACT
1 CCTCAATAAGAAATTCACT
90212880 GAGTGTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
CCTCAATAAGAAATTCACT
Found at i:90216363 original size:44 final size:46
Alignment explanation
Indices: 90216315--90216411 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 46
90216305 AGCCACTAGC
* *
90216315 CTTATCTCT-CTAAGGTAGCAAGAGAGCAGGTTGAAAATTGTAG-T
1 CTTATCTCTCCTAAGGTAGCAAGAAAGCAGATTGAAAATTGTAGAT
* **
90216359 CTTATCT-TCCTGAGGTAGCAAGAAAGCAGATTGAGGATTGTAGAT
1 CTTATCTCTCCTAAGGTAGCAAGAAAGCAGATTGAAAATTGTAGAT
*
90216404 CTTGTCTC
1 CTTATCTC
90216412 CTTAAGCAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
43 1 0.02
44 36 0.82
45 7 0.16
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (46 bp):
CTTATCTCTCCTAAGGTAGCAAGAAAGCAGATTGAAAATTGTAGAT
Found at i:90216518 original size:176 final size:177
Alignment explanation
Indices: 90216228--90216675 Score: 622
Period size: 176 Copynumber: 2.6 Consensus size: 177
90216218 CGGTGAAGTC
*
90216228 AGATCTTATCTCCCTAAGC---AGT--AGCAGATTAAAGATGGCGAATCTTATCTTCCCAAGGTA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
* * *
90216288 GTAGGGGAGAAAATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAAAT
66 GCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAACAAGAGAGCAGGTTGAAAAT
* *
90216353 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGATTGAGGATTGT
131 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTAT
* * * *
90216400 AGATCTTGTCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
* * * * *
90216465 GCAGGGG-GGAGATTTTAGCCACCAGCCTTATCTCTCTATGGTAACAAGAGAGCAGGTTTAAGAT
66 GCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAACAAGAGAGCAGGTTGAAAAT
*
90216529 TGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGGATTAT
131 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTAT
** *
90216576 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGTAAAAT-TTATCTTCCCAATGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGG-CGAATCTTATCTTCCCAAGGT
* ** **
90216640 AGTAAAGGAGAAAATTGAAGCCACCAGCCTTATCTC
65 AGCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTC
90216676 CCTGAAGTTA
Statistics
Matches: 239, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
172 17 0.07
175 3 0.01
176 152 0.64
177 67 0.28
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (177 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
GCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAACAAGAGAGCAGGTTGAAAAT
TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTAT
Found at i:90218309 original size:13 final size:13
Alignment explanation
Indices: 90218291--90218320 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
90218281 ATTATTCATT
*
90218291 TTTTAACATATTA
1 TTTTAACATAGTA
90218304 TTTTAACATAGTA
1 TTTTAACATAGTA
90218317 TTTT
1 TTTT
90218321 GAACTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTTAACATAGTA
Found at i:90219001 original size:16 final size:16
Alignment explanation
Indices: 90218982--90219019 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
90218972 ATTTTACATA
90218982 TTATTTATTTTTAT-TT
1 TTATTTA-TTTTATGTT
90218998 TTATTTATTTTATGTT
1 TTATTTATTTTATGTT
90219014 TTATTT
1 TTATTT
90219020 CAAATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
TTATTTATTTTATGTT
Found at i:90220645 original size:16 final size:16
Alignment explanation
Indices: 90220626--90220657 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90220616 GAACCCGTTT
90220626 TTTTAAGTCTATTTAC
1 TTTTAAGTCTATTTAC
90220642 TTTTAAGTCTATTTAC
1 TTTTAAGTCTATTTAC
90220658 ATATAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTTAAGTCTATTTAC
Found at i:90225276 original size:39 final size:39
Alignment explanation
Indices: 90225211--90225354 Score: 182
Period size: 39 Copynumber: 3.7 Consensus size: 39
90225201 AGTGATGAAG
* *
90225211 TATATCCGGACTTAACGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
90225250 TATATTCGGACTTAAGGTTCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
90225289 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
90225328 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGT-CCGCAGGCT
90225355 TCGAGCTAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 5 0.05
39 86 0.95
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:90233427 original size:39 final size:39
Alignment explanation
Indices: 90233373--90233527 Score: 247
Period size: 39 Copynumber: 4.0 Consensus size: 39
90233363 AGTGATGAAG
*
90233373 TATATCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
90233412 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
90233451 TATATCCGGACCTAAGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
90233490 TATAACCGGACTTAAGGTCCGCAGGCTACGTACTGGAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
90233528 ATACGTCCAG
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:90233553 original size:78 final size:77
Alignment explanation
Indices: 90233376--90233555 Score: 236
Period size: 78 Copynumber: 2.3 Consensus size: 77
90233366 GATGAAGTAT
* * *
90233376 ATCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAATTATATCCAGACTTAAGGTCCGCAGGCTAT
1 ATCCGGAC-TAAAGTCTGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTAC
* * *
90233441 GTGCTGGAATTAT
65 GTACTGGAAATAC
* *
90233454 ATCCGGACCTAAGGTCTGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTAC
1 ATCCGGA-CTAAAGTCTGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTAC
90233519 GTACTGGAAATAC
65 GTACTGGAAATAC
*
90233532 GTCCAGG-CTAAAGTCTCGCAGGCT
1 ATCC-GGACTAAAGTCT-GCAGGCT
90233556 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
77 8 0.09
78 80 0.88
79 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
ATCCGGACTAAAGTCTGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTACG
TACTGGAAATAC
Found at i:90236164 original size:49 final size:49
Alignment explanation
Indices: 90236084--90236354 Score: 438
Period size: 49 Copynumber: 5.6 Consensus size: 49
90236074 CCCTTCGGGA
* * * * * *
90236084 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90236131 ATTATCACATATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
90236180 CTTATCACATATGTACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
90236229 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
90236278 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
90236327 CTTATCACATATATACACACTTTCACAT
1 CTTATCACATATATACACACTTTCACAT
90236355 ATTTTTCTTG
Statistics
Matches: 208, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 9 0.04
48 1 0.00
49 198 0.95
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90239381 original size:11 final size:12
Alignment explanation
Indices: 90239348--90239373 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90239338 GTTTCTAATG
90239348 AAACTAGACTCA
1 AAACTAGACTCA
90239360 AAACTAGACTCA
1 AAACTAGACTCA
90239372 AA
1 AA
90239374 GTAGACTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (12 bp):
AAACTAGACTCA
Done.