Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 293 of 425
Found at i:90894278 original size:14 final size:14
Alignment explanation
Indices: 90894259--90894295 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
90894249 TAAGACCCTG
*
90894259 ACCCTATACGATAA
1 ACCCTAAACGATAA
*
90894273 ACCCTAAACTATAA
1 ACCCTAAACGATAA
90894287 ACCCTAAAC
1 ACCCTAAAC
90894296 CCCAAATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (14 bp):
ACCCTAAACGATAA
Found at i:90894295 original size:21 final size:21
Alignment explanation
Indices: 90894269--90894321 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
90894259 ACCCTATACG
90894269 ATAAACCCTAAA-CTATAAACC
1 ATAAACCCTAAATC-ATAAACC
* * *
90894290 CTAAACCCCAAATCATATACC
1 ATAAACCCTAAATCATAAACC
90894311 ATAAACCCTAA
1 ATAAACCCTAA
90894322 TTAACCCCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (21 bp):
ATAAACCCTAAATCATAAACC
Found at i:90894467 original size:15 final size:14
Alignment explanation
Indices: 90894405--90894463 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
90894395 ACATAATTCA
**
90894405 TAAACCATTAACCAT
1 TAAACC-TTAACCCC
*
90894420 TAACCCTTAACCCC
1 TAAACCTTAACCCC
*
90894434 TAAACTCCTAACCCC
1 TAAAC-CTTAACCCC
*
90894449 TAAACCTTAAACCC
1 TAAACCTTAACCCC
90894463 T
1 T
90894464 TAAAGCCTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
14 18 0.50
15 18 0.50
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCTTAACCCC
Found at i:90894734 original size:14 final size:13
Alignment explanation
Indices: 90894684--90894730 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
90894674 ATAAACCTCA
90894684 AACCCTAAATCAT
1 AACCCTAAATCAT
* *
90894697 AAAACATAAATCAT
1 -AACCCTAAATCAT
90894711 CAACCCTAAATCAT
1 -AACCCTAAATCAT
90894725 AACCCT
1 AACCCT
90894731 TAAACCTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 6 0.21
14 22 0.79
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (13 bp):
AACCCTAAATCAT
Found at i:90895657 original size:54 final size:54
Alignment explanation
Indices: 90895566--90895670 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
90895556 GCGAGCTATT
* * *
90895566 GCGGCATTTTTAGGAAAGCGCCGCTAATGTCATTGAAGCTCATATAAAACGACG
1 GCGGCATTTTTAGGAAAACGCCGCTAATGCCAATGAAGCTCATATAAAACGACG
* * * *
90895620 GCGGCGTTTTTGGGAAAACGCCGCTACTGCCAATGAAGCTCATGTAAAACG
1 GCGGCATTTTTAGGAAAACGCCGCTAATGCCAATGAAGCTCATATAAAACG
90895671 TCTTGCTTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (54 bp):
GCGGCATTTTTAGGAAAACGCCGCTAATGCCAATGAAGCTCATATAAAACGACG
Found at i:90895765 original size:40 final size:40
Alignment explanation
Indices: 90895690--90895767 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
90895680 AACTTTTAGC
* **
90895690 GGCGCTTTTTCAAAAACGCCGCTAAAGCTTGATCTATTGA
1 GGCGCTTTTTCAAAAACGCCGCTAAAACTCCATCTATTGA
* *
90895730 GGCGTTTTTTTAAAAACGCCGCTAAAACTCCATCTATT
1 GGCGCTTTTTCAAAAACGCCGCTAAAACTCCATCTATT
90895768 TAATTTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (40 bp):
GGCGCTTTTTCAAAAACGCCGCTAAAACTCCATCTATTGA
Found at i:90899418 original size:36 final size:37
Alignment explanation
Indices: 90899340--90899421 Score: 96
Period size: 36 Copynumber: 2.2 Consensus size: 37
90899330 CTAGCTTAAT
*
90899340 AATAATTTAAATAAATAAATCATTACAATATATATAAG
1 AATAATTTAAATAAATAAAT-ATTACAATATATATAAA
* * *
90899378 AATAATTTAAA-ATATAAAT-TTATTAATATATGTAAA
1 AATAATTTAAATAAATAAATATTA-CAATATATATAAA
90899414 AATAATTT
1 AATAATTT
90899422 TTTCGGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 3 0.08
36 18 0.46
37 7 0.18
38 11 0.28
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (37 bp):
AATAATTTAAATAAATAAATATTACAATATATATAAA
Found at i:90899936 original size:11 final size:11
Alignment explanation
Indices: 90899922--90899960 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
90899912 TAAATAGTAA
90899922 TAAAATAATAG
1 TAAAATAATAG
*
90899933 TAAAATAATAA
1 TAAAATAATAG
90899944 TAAAATAATAG
1 TAAAATAATAG
90899955 TAAAAT
1 TAAAAT
90899961 GAGAAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:90899944 original size:22 final size:22
Alignment explanation
Indices: 90899913--90899960 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
90899903 AGATATTTCT
*
90899913 AAATAGTAATAAAATAATAGTA
1 AAATAATAATAAAATAATAGTA
90899935 AAATAATAATAAAATAATAGTA
1 AAATAATAATAAAATAATAGTA
90899957 AAAT
1 AAAT
90899961 GAGAAAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
AAATAATAATAAAATAATAGTA
Found at i:90901740 original size:40 final size:40
Alignment explanation
Indices: 90901681--90901822 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
90901671 AAATTGAATG
* * *
90901681 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
90901721 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
90901761 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
90901801 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
90901823 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:90901823 original size:40 final size:39
Alignment explanation
Indices: 90901720--90901848 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
90901710 TGCTGGAAAT
* * *
90901720 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
90901760 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
90901800 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
90901840 TATATCCGG
1 TATATCCGG
90901849 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:90909770 original size:40 final size:40
Alignment explanation
Indices: 90909711--90909852 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
90909701 AAATTGAATG
* * *
90909711 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
90909751 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
90909791 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
90909831 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
90909853 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:90909853 original size:40 final size:39
Alignment explanation
Indices: 90909750--90909878 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
90909740 TGCTGGAAAT
* * *
90909750 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
90909790 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
90909830 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
90909870 TATATCCGG
1 TATATCCGG
90909879 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:90923157 original size:39 final size:39
Alignment explanation
Indices: 90923076--90923238 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
90923066 TATGGTAACC
* * *
90923076 CGCACAAATACCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
90923116 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
90923155 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
90923194 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
90923233 CGCACA
1 CGCACA
90923239 TTCATACACA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 96 0.86
40 15 0.14
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:90929303 original size:17 final size:17
Alignment explanation
Indices: 90929246--90929308 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 17
90929236 TTTTAATAAG
*
90929246 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTAA
* *
90929263 ATCTAATATT-TATTAA
1 ATTTAATATTAAATTAA
* *
90929279 GA-TAAATATTAGATTAA
1 -ATTTAATATTAAATTAA
90929296 ATTTAATATTAAA
1 ATTTAATATTAAA
90929309 GTGATTAAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
16 11 0.31
17 24 0.69
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (17 bp):
ATTTAATATTAAATTAA
Found at i:90933606 original size:15 final size:15
Alignment explanation
Indices: 90933586--90933617 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
90933576 CATTTCACTA
*
90933586 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
90933601 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
90933616 TT
1 TT
90933618 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:90938502 original size:4 final size:4
Alignment explanation
Indices: 90938493--90938567 Score: 59
Period size: 4 Copynumber: 19.0 Consensus size: 4
90938483 CATACAAATT
* *
90938493 AGAA AGAA AG-A A-AA AGAA AGAA A-AA GAAAA AGAA AGAA AGGA AGAA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA -AGAA AGAA AGAA AGAA AGAA
* *
90938539 GAGAA A-AA GAAAA AGAA AGAA AGGA AGAA
1 -AGAA AGAA -AGAA AGAA AGAA AGAA AGAA
90938568 GGAAGAAATG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
3 8 0.14
4 42 0.72
5 8 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:90938510 original size:6 final size:6
Alignment explanation
Indices: 90938499--90938556 Score: 57
Period size: 6 Copynumber: 9.2 Consensus size: 6
90938489 AATTAGAAAG
90938499 AAAGAA AAAG-- AAAGAA AAAGAA AAAGAAA GAAAGGAA GAAGAGAA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -AAA-GAA -AA-AGAA AAAGAA
90938550 AAAGAA A
1 AAAGAA A
90938557 GAAAGGAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
4 4 0.09
6 25 0.54
7 4 0.09
8 11 0.24
9 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:90938510 original size:10 final size:10
Alignment explanation
Indices: 90938495--90938560 Score: 71
Period size: 10 Copynumber: 6.1 Consensus size: 10
90938485 TACAAATTAG
90938495 AAAGAAAGAA
1 AAAGAAAGAA
90938505 AAAGAAAGAA
1 AAAGAAAGAA
90938515 AAAGAAA-AA
1 AAAGAAAGAA
90938524 GAAAGAAAGGAA
1 -AAAGAAA-GAA
90938536 GAAGAGAAAAAGAA
1 -AA-AG--AAAGAA
90938550 AAAGAAAGAA
1 AAAGAAAGAA
90938560 A
1 A
90938561 GGAAGAAGGA
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
9 2 0.04
10 31 0.62
12 7 0.14
13 4 0.08
14 3 0.06
15 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:90938550 original size:29 final size:29
Alignment explanation
Indices: 90938495--90938568 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
90938485 TACAAATTAG
90938495 AAAGAAAGAAA--AAGAA-AGAAAAAGAA
1 AAAGAAAGAAAGGAAGAAGAGAAAAAGAA
90938521 AAAGAAAGAAAGGAAGAAGAGAAAAAGAA
1 AAAGAAAGAAAGGAAGAAGAGAAAAAGAA
90938550 AAAGAAAGAAAGGAAGAAG
1 AAAGAAAGAAAGGAAGAAG
90938569 GAAGAAATGC
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
26 11 0.24
28 5 0.11
29 29 0.64
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (29 bp):
AAAGAAAGAAAGGAAGAAGAGAAAAAGAA
Found at i:90938943 original size:20 final size:20
Alignment explanation
Indices: 90938907--90938944 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
90938897 GTGCAATTTG
*
90938907 TATGAAAATATAGAATTAAA
1 TATGAAAATATAAAATTAAA
90938927 TATGAAGAATA-AAAATTA
1 TATGAA-AATATAAAATTA
90938945 GTCTCGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAA
Found at i:90940260 original size:3 final size:3
Alignment explanation
Indices: 90940252--90940309 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
90940242 GAATAATGAC
90940252 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
90940300 AAT AAT AAT A
1 AAT AAT AAT A
90940310 TCCAAATTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:90942623 original size:44 final size:44
Alignment explanation
Indices: 90942508--90942905 Score: 316
Period size: 44 Copynumber: 9.0 Consensus size: 44
90942498 TTGTGACTTA
* * * * * *
90942508 TAGCTTTAATCTGCCCCACTGCAACTTCAGGGAAATGAGGTTCG
1 TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* * * * * * *
90942552 TTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGGTTTA
1 -TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* *
90942597 TAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTG
1 TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
** * * *
90942641 CTTTCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTG
1 -TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* * *
90942686 T-GACTTTAATCTGCTCTACTGTAATTTCAGGGAGATAAGATTCG
1 TAG-CTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* ** *
90942730 TAGCTTTAATCTACT-TCACTTTAACTTCAGGGAGATAAGATTCG
1 TAGCTTTAATCTGCTCT-ACTGCAACTTCAGGGAGATAAGATTTG
* * * * *
90942774 TCA-TTTTCAATCTGCTCTACTGCAACTTCAGAGAGTTGAGATTCG
1 T-AGCTTT-AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* * * * ** * * *
90942819 TAACTTCAACCTGCTCCACTATAACTTTAGGGAGATAAGGTTTA
1 TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
* * * *
90942863 TGGCTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATTT
1 TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTT
90942906 TCCGTGATAA
Statistics
Matches: 284, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
43 1 0.00
44 176 0.62
45 106 0.37
46 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (44 bp):
TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
Found at i:90942667 original size:89 final size:88
Alignment explanation
Indices: 90942505--90942904 Score: 390
Period size: 89 Copynumber: 4.5 Consensus size: 88
90942495 GATTTGTGAC
* * * * *
90942505 TTATAGCTTTAATCTGCCCCACTGCAACTTCAGGGAAATGAGGTTCGTTATCTTCAATCTACTCC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCG-TATCTTCAATCTACTCC
*
90942570 ACTACAACTTCAGGGAGATAAGGT
65 ACTACAACTTCAGGGAGATAAGAT
* * * * * * *
90942594 TTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTTTCTTCAGTCTGCTCT
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCG-TATCTTCAATCTACTCC
* *
90942659 ACTGCAACTTCAGGGAGATAAGAC
65 ACTACAACTTCAGGGAGATAAGAT
* * * * * *
90942683 TTGT-GACTTTAATCTGCTCTACTGTAATTTCAGGGAGATAAGATTCGTAGCTTTAATCTACTTC
1 TTATAG-CTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTACTCC
**
90942747 ACTTTAACTTCAGGGAGATAAGAT
65 ACTACAACTTCAGGGAGATAAGAT
** * * * * * * *
90942771 TCGTCA-TTTTCAATCTGCTCTACTGCAACTTCAGAGAGTTGAGATTCGTAACTTCAACCTGCTC
1 TTAT-AGCTTT-AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTACTC
* * *
90942835 CACTATAACTTTAGGGAGATAAGGT
64 CACTACAACTTCAGGGAGATAAGAT
* * * *
90942860 TTATGGCTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATT
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
90942905 TTCCGTGATA
Statistics
Matches: 249, Mismatches: 57, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
88 67 0.27
89 182 0.73
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (88 bp):
TTATAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTACTCCA
CTACAACTTCAGGGAGATAAGAT
Found at i:90942734 original size:133 final size:134
Alignment explanation
Indices: 90942515--90942905 Score: 443
Period size: 133 Copynumber: 2.9 Consensus size: 134
90942505 TTATAGCTTT
* * * * * * * * * *
90942515 AATCTGCCCCACTGCAACTTCAGGGAAATGAGGTTCGTTATCTTCAATCTACTCCACTACAAC-T
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCG-TAACTTCAACCTGCTCCACTATAACTT
* * *
90942579 TCAGGGAGATAAGGTTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTG-CT
65 TCAGGGAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTCAGGGAGATAAGATTTGTCA
90942643 TTCTTC
130 TT-TTC
* * * * * * *
90942649 AGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTT-GTGACTTTAATCTGCTCTACTGTAA-TT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGA-TTCGTAACTTCAACCTGCTCCACTATAACTT
* ** * *
90942712 TCAGGGAGATAAGATTCGTAGCTTTAATCTACT-TCACTTTAACTTCAGGGAGATAAGATTCGTC
65 TCAGGGAGATAAGGTTTATAGCTTTAATCTACTCT-ACTGTAACTTCAGGGAGATAAGATTTGTC
90942776 ATTTTC
129 ATTTTC
* *
90942782 AATCTGCTCTACTGCAACTTCAGAGAGTTGAGATTCGTAACTTCAACCTGCTCCACTATAACTTT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGTAACTTCAACCTGCTCCACTATAACTTT
* *
90942847 -AGGGAGATAAGGTTTATGGCTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATTT
66 CAGGGAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTCAGGGAGATAAGATTT
90942906 TCCGTGATAA
Statistics
Matches: 213, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
132 3 0.01
133 174 0.82
134 34 0.16
135 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (134 bp):
AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGTAACTTCAACCTGCTCCACTATAACTTT
CAGGGAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTCAGGGAGATAAGATTTGTCAT
TTTC
Found at i:90952813 original size:46 final size:46
Alignment explanation
Indices: 90952688--90952904 Score: 172
Period size: 46 Copynumber: 4.7 Consensus size: 46
90952678 ACATCGACGC
* *
90952688 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA-ACCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCG-AGGCCGATG
* * ** * *
90952733 CATGTCCCGGACATGTCTTATACTAGCTTACGTCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCACACATCTCGAGGCCGATG
* * * *
90952779 CATGTCCCAGACATGTCTTACACTAGCACCCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACACATCTCGAGGCCGATG
* * * * * *
90952825 CCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACACAT-CTCGAGGCCGATG
* * *
90952873 CATGTCTCAAACATGTCTTACACTAGCTCACA
1 CATGTCCCAGACATGTCTTACACTAGCACACA
90952905 ATAACCCATA
Statistics
Matches: 136, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 65 0.48
47 24 0.18
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACACATCTCGAGGCCGATG
Found at i:90955646 original size:28 final size:28
Alignment explanation
Indices: 90955606--90955665 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
90955596 AAACAAATTT
*
90955606 CTTTACATAAAATGGATTACATATATAG
1 CTTTACATAAAATAGATTACATATATAG
90955634 CTTTACATAAAATAGATTACATATATAG
1 CTTTACATAAAATAGATTACATATATAG
90955662 CTTT
1 CTTT
90955666 GCCCTATAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (28 bp):
CTTTACATAAAATAGATTACATATATAG
Found at i:90958628 original size:12 final size:12
Alignment explanation
Indices: 90958611--90958654 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
90958601 ACTAACATAG
90958611 AATAATGACAAT
1 AATAATGACAAT
*
90958623 AATAATAACAAT
1 AATAATGACAAT
*
90958635 AATAAT-AGTAAT
1 AATAATGA-CAAT
90958647 AATAATGA
1 AATAATGA
90958655 AATCTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 1 0.04
12 26 0.93
13 1 0.04
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (12 bp):
AATAATGACAAT
Found at i:90970932 original size:39 final size:39
Alignment explanation
Indices: 90970845--90971143 Score: 276
Period size: 39 Copynumber: 7.7 Consensus size: 39
90970835 GCTACTCGTT
* * *
90970845 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
**
90970885 CAAATGCCTTCGGGACTTAACCCGGATTAGCT-ACTCGTT
1 CAAATGCCTTCGGGACTTAACCCGGATTAG-TAACTCGCA
* * *
90970924 CAAATGCCTTC-GGACATAGCCCGG-TTATATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTA-GTAACTCGCA
90970962 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCA
**
90971001 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGA-TTAGTAACTCGCA
**
90971041 CAAATGCCTT--GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGA-TTAGTAACTCGCA
* ** * *
90971080 CAAATGCCTTC-GGTCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAAC-TCGCA
*
90971120 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
90971144 CATCATTCGA
Statistics
Matches: 230, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
37 4 0.02
38 39 0.17
39 116 0.50
40 71 0.31
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:90971065 original size:79 final size:78
Alignment explanation
Indices: 90970845--90971143 Score: 376
Period size: 79 Copynumber: 3.8 Consensus size: 78
90970835 GCTACTCGTT
90970845 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGG
**
90970910 A-TTAGCT-ACTCGTT
64 ATTTAG-TAACTCGCA
90970924 CAAATGCCTTCGGACATAGCCCGGTTATA-TAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
1 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
90970988 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * **
90971001 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTT-GGATCTTAGTCCG
1 CAAATGCCTTCGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
90971064 GATTTAGTAACTCGCA
63 GATTTAGTAACTCGCA
* * * * * * *
90971080 CAAATGCCTTCGGTCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACATAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGACTTAACCCGGA
90971144 CATCATTCGA
Statistics
Matches: 200, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
76 15 0.08
77 44 0.22
78 62 0.31
79 79 0.40
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:90979326 original size:40 final size:40
Alignment explanation
Indices: 90979002--90979326 Score: 381
Period size: 40 Copynumber: 8.1 Consensus size: 40
90978992 CGGAATTTAA
** *
90979002 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90979042 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
90979082 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
90979122 GCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
90979162 CTGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
90979202 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90979242 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGTCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90979282 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90979322 CCGGA
1 CCGGA
90979327 CATCATTCGA
Statistics
Matches: 250, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
39 5 0.02
40 234 0.94
41 11 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90986350 original size:20 final size:20
Alignment explanation
Indices: 90986311--90986351 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
90986301 CTAAAAACCC
*
90986311 TAACCCTAAACCCTTAAAAA
1 TAACCCTAAACCCTAAAAAA
90986331 TAACCCTAAA-CCTAACAAAA
1 TAACCCTAAACCCTAA-AAAA
90986351 T
1 T
90986352 TAAAGGCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (20 bp):
TAACCCTAAACCCTAAAAAA
Found at i:90992105 original size:21 final size:21
Alignment explanation
Indices: 90992052--90992105 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
90992042 TAATTATTTT
*
90992052 TTTATAA-ATATATATTTAATG
1 TTTATAATATA-ATATTTAATA
*
90992073 TTT-TAATAATAATATTTACTA
1 TTTATAAT-ATAATATTTAATA
90992094 TTTATAATATAA
1 TTTATAATATAA
90992106 AATATTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 18 0.64
22 7 0.25
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTATAATATAATATTTAATA
Found at i:90994837 original size:32 final size:30
Alignment explanation
Indices: 90994800--90994858 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
90994790 TTATTTTTAG
90994800 ATAAAAATATAAAAGATTTTATAAAAATACCT
1 ATAAAAATATAAAA-ATTTT-TAAAAATACCT
* *
90994832 ATAAAATTATAAAAATTTTTAGAAATA
1 ATAAAAATATAAAAATTTTTAAAAATA
90994859 AATGAATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 7 0.28
31 5 0.20
32 13 0.52
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (30 bp):
ATAAAAATATAAAAATTTTTAAAAATACCT
Found at i:91003840 original size:12 final size:12
Alignment explanation
Indices: 91003809--91003841 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91003799 CCCAATTATC
91003809 AAAAAAAA-AAA
1 AAAAAAAAGAAA
91003820 AAAAAAAAGAAA
1 AAAAAAAAGAAA
*
91003832 GAAAAAAAGA
1 AAAAAAAAGA
91003842 GGAGGAGGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:91015793 original size:47 final size:47
Alignment explanation
Indices: 91015719--91015818 Score: 173
Period size: 47 Copynumber: 2.1 Consensus size: 47
91015709 TCCTGCACGT
*
91015719 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGGGCA
1 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
* *
91015766 TATCTTATAATGATTCTTTGCATAGTTGATGTCCATATAGATGAGCA
1 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
91015813 TATCTT
1 TATCTT
91015819 CTTAAAGAGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (47 bp):
TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
Found at i:91019856 original size:25 final size:25
Alignment explanation
Indices: 91019814--91019873 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
91019804 CCATATGACA
*
91019814 GGAAGCTCATGTGAGCTATATAACG
1 GGAAGCTCATCTGAGCTATATAACG
* * *
91019839 GGAAGCTTATCTGGGCTATATAATG
1 GGAAGCTCATCTGAGCTATATAACG
91019864 GGAAGCTCAT
1 GGAAGCTCAT
91019874 AAGAGTCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (25 bp):
GGAAGCTCATCTGAGCTATATAACG
Found at i:91020012 original size:25 final size:26
Alignment explanation
Indices: 91019995--91020051 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
91019985 GAAGCTCCGG
91019995 AGAGCAATTAATCAGGAAGCTCACAA
1 AGAGCAATTAATCAGGAAGCTCACAA
** * *
91020021 AGAGCCTTTAATCAGGAAGATCACGA
1 AGAGCAATTAATCAGGAAGCTCACAA
91020047 AGAGC
1 AGAGC
91020052 CATATAACGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (26 bp):
AGAGCAATTAATCAGGAAGCTCACAA
Found at i:91020031 original size:26 final size:26
Alignment explanation
Indices: 91020002--91020052 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
91019992 CGGAGAGCAA
*
91020002 TTAATCAGGAAGCTCACAAAGAGCCT
1 TTAATCAGGAAGATCACAAAGAGCCT
*
91020028 TTAATCAGGAAGATCACGAAGAGCC
1 TTAATCAGGAAGATCACAAAGAGCC
91020053 ATATAACGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
TTAATCAGGAAGATCACAAAGAGCCT
Found at i:91020541 original size:5 final size:5
Alignment explanation
Indices: 91020512--91020555 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
91020502 TAAATTTAGC
* *
91020512 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCAAT TCA
91020556 CATCCTAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:91029122 original size:136 final size:135
Alignment explanation
Indices: 91028959--91029228 Score: 420
Period size: 136 Copynumber: 2.0 Consensus size: 135
91028949 TAATCGCAAG
* *
91028959 TAAATGCATCTCCCATCCAAAGGGACCCTTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
1 TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
* *
91029024 TCTTTTT-GAAAGATTAATGGTTAAATTAGACTTTTTTTTAAAGGTTGATA-G-TCAAATTTAGT
66 TCTTTTTAG-AAGATTAATGATTAAATTAGAC-TTTTTTTAAAGGTT-A-ACGATCAAATTTAAT
91029086 TAAAAAAAA
127 TAAAAAAAA
* * *
91029095 TAAATGCATCTGCCATCCAAAAGGACCCCTAGTTAGTATTTTCATCAAAAGAACAATAATTTAAC
1 TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
91029160 TCTTTTTAGAAGATTAATGATTAAATTAGACTTTTTTTAAAGGTTAACGATCAAATTTAATTAAA
66 TCTTTTTAGAAGATTAATGATTAAATTAGACTTTTTTTAAAGGTTAACGATCAAATTTAATTAAA
91029225 AAAA
131 AAAA
91029229 TAATAATCAA
Statistics
Matches: 124, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
133 1 0.01
134 2 0.02
135 32 0.26
136 88 0.71
137 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (135 bp):
TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
TCTTTTTAGAAGATTAATGATTAAATTAGACTTTTTTTAAAGGTTAACGATCAAATTTAATTAAA
AAAAA
Found at i:91029430 original size:7 final size:7
Alignment explanation
Indices: 91029418--91029448 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
91029408 TGTATGAATA
91029418 TAAAATT
1 TAAAATT
91029425 TAAAATT
1 TAAAATT
91029432 TAAAATT
1 TAAAATT
91029439 T-AAATT
1 TAAAATT
91029445 TAAA
1 TAAA
91029449 TTCAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAAAATT
Found at i:91029437 original size:14 final size:13
Alignment explanation
Indices: 91029418--91029448 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
91029408 TGTATGAATA
91029418 TAAAATTTAAAATT
1 TAAAATTT-AAATT
91029432 TAAAATTTAAATT
1 TAAAATTTAAATT
91029445 TAAA
1 TAAA
91029449 TTCAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TAAAATTTAAATT
Found at i:91035463 original size:16 final size:16
Alignment explanation
Indices: 91035428--91035474 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
91035418 TCTTTAAGTG
* * *
91035428 AAGAAAGATTACGCCC
1 AAGAAAGAGTACACCT
*
91035444 AAGAAAGAGTGCACCT
1 AAGAAAGAGTACACCT
91035460 AAGAAAGAGTACACC
1 AAGAAAGAGTACACC
91035475 CCAAAGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (16 bp):
AAGAAAGAGTACACCT
Found at i:91037083 original size:29 final size:29
Alignment explanation
Indices: 91037050--91037151 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
91037040 GTGACGAGAT
91037050 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
91037079 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
91037107 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
91037136 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
91037152 AGTCGGAGGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:91044933 original size:29 final size:29
Alignment explanation
Indices: 91044900--91045002 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
91044890 GTGACGAGAT
91044900 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
91044929 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
91044958 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
91044987 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
91045003 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:91047757 original size:24 final size:26
Alignment explanation
Indices: 91047706--91047768 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
91047696 AAACCAAACC
* * *
91047706 AAGCCCTTGTGGCGAGTTATCTATAA
1 AAGCCTTTGTGGCGAATTATCTAGAA
91047732 AA-CCTTTGTGGCGAATTATCT-GAA
1 AAGCCTTTGTGGCGAATTATCTAGAA
91047756 AAGCCTTTGTGGC
1 AAGCCTTTGTGGC
91047769 ATATTGTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.12
25 27 0.82
26 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (26 bp):
AAGCCTTTGTGGCGAATTATCTAGAA
Found at i:91048327 original size:13 final size:13
Alignment explanation
Indices: 91048309--91048335 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91048299 ATTTAAAGGA
91048309 AACAGATTCACAG
1 AACAGATTCACAG
91048322 AACAGATTCACAG
1 AACAGATTCACAG
91048335 A
1 A
91048336 TTTAATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (13 bp):
AACAGATTCACAG
Found at i:91069400 original size:23 final size:21
Alignment explanation
Indices: 91069374--91069417 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 21
91069364 ATTACATATA
91069374 TTTAATTTTTCTATATTTTTTAT
1 TTTAATTTTT-TA-ATTTTTTAT
91069397 TTTAATTTTTTAATTTTTTAT
1 TTTAATTTTTTAATTTTTTAT
91069418 AATTTTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.43
22 2 0.10
23 10 0.48
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTAATTTTTTAATTTTTTAT
Found at i:91070830 original size:21 final size:21
Alignment explanation
Indices: 91070804--91070843 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
91070794 GCTCTGTCAT
91070804 GATACTATAGTGAAATGACAC
1 GATACTATAGTGAAATGACAC
91070825 GATACTATAGTGAAATGAC
1 GATACTATAGTGAAATGAC
91070844 TTTGTGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (21 bp):
GATACTATAGTGAAATGACAC
Found at i:91071275 original size:16 final size:18
Alignment explanation
Indices: 91071248--91071280 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91071238 TAGAATCGAG
91071248 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
91071265 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
91071281 TGATGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:91072228 original size:16 final size:16
Alignment explanation
Indices: 91072207--91072241 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
91072197 TATAAAGGGC
91072207 TAGACAATTTAAGTGT
1 TAGACAATTTAAGTGT
91072223 TAGACAATTTAAGTGT
1 TAGACAATTTAAGTGT
91072239 TAG
1 TAG
91072242 GTTTAAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (16 bp):
TAGACAATTTAAGTGT
Found at i:91074601 original size:18 final size:18
Alignment explanation
Indices: 91074557--91074602 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
91074547 AATCATAAAT
91074557 AATTATTAAAAATTCTCAA
1 AATTA-TAAAAATTCTCAA
* **
91074576 AATCATAAAAATTCTTTA
1 AATTATAAAAATTCTCAA
91074594 AATTATAAA
1 AATTATAAA
91074603 GAAACTAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATAAAAATTCTCAA
Found at i:91093003 original size:44 final size:44
Alignment explanation
Indices: 91092907--91093115 Score: 175
Period size: 44 Copynumber: 4.8 Consensus size: 44
91092897 CCATAGCGAA
* * * * *
91092907 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAACTATAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * * *
91092951 TCTAATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGTTACACG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * *
91092995 TCTTATCTCCTTGAAGTTGCAGTGGACCAAATTGAAGCTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * * * * *
91093039 TCTTATCTTCTTGAAGTTGCAGTAGAGTAGATTGAAGCCACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* ** * * *
91093083 TTTTATCTCTTTGAAGTTGTAGTAGAGCAGATT
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
91093116 AAACTATAAA
Statistics
Matches: 134, Mismatches: 31, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 134 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
Found at i:91094873 original size:20 final size:20
Alignment explanation
Indices: 91094848--91094886 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
91094838 TTAATTAGAA
91094848 TACTACTCCGCGCACTATGG
1 TACTACTCCGCGCACTATGG
91094868 TACTACTCCGCGCACTATG
1 TACTACTCCGCGCACTATG
91094887 TATGATTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.18, T:0.26
Consensus pattern (20 bp):
TACTACTCCGCGCACTATGG
Found at i:91100763 original size:27 final size:29
Alignment explanation
Indices: 91100734--91100796 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 29
91100724 GCTTGAGTGT
91100734 TAATTCCATATTCTGAGAAGAAGCCCTTAA
1 TAATTCCATATTCTGAGAAGAAGCCCTT-A
91100764 TAATTCCATATTCTGAGAAGAAGCTCACTTA
1 TAATTCCATATTCTGAGAAGAAGC-C-CTTA
91100795 TA
1 TA
91100797 TTCAACTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 24 0.77
31 4 0.13
32 3 0.10
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32
Consensus pattern (29 bp):
TAATTCCATATTCTGAGAAGAAGCCCTTA
Found at i:91102831 original size:45 final size:44
Alignment explanation
Indices: 91102700--91103042 Score: 206
Period size: 44 Copynumber: 7.5 Consensus size: 44
91102690 CGTATCACTA
* * *
91102700 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
* *
91102744 ATCTCCGTGAAGTTGCAGTGGAGCCGATTGAAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
* * *
91102788 ATCTCCCTGAAGTTACAATGGATGCAGATTGAAGCAACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGA-GCAGATTGAAGCTACAAATCTT
** * * * *
91102833 ATAC-CTTTGAAGTTGCAGTGG-GTCGGATTAAATCTACCATAGTAAGTTTT
1 AT-CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCTA-C--A--AA-TCTT
* ** * * * *
91102883 ATTTCCCAAAAGTTACAGTGGAACAGATTAAAACTACAAGCTACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA-T-----T-GAAGCTACAAATCTT
* * ** *
91102934 ATATCCCTGAAATTATAGTGGAGCAGATTGAAGATACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
** * * ** *
91102978 ATCTCCCTGAAGTTGCAGCAGAGTAGATTGAAACTACACTTCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
*
91103022 ATAC-CCCTGAAGCTGCAGTGG
1 AT-CTCCCTGAAGTTGCAGTGG
91103043 GTTAGAATGA
Statistics
Matches: 225, Mismatches: 55, Indels: 38
0.71 0.17 0.12
Matches are distributed among these distances:
43 1 0.00
44 127 0.56
45 38 0.17
46 1 0.00
47 1 0.00
49 2 0.01
50 21 0.09
51 25 0.11
52 1 0.00
54 1 0.00
56 2 0.01
57 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
Found at i:91103493 original size:13 final size:13
Alignment explanation
Indices: 91103475--91103500 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91103465 GAGACAAACA
91103475 TGCAAAGAACAGT
1 TGCAAAGAACAGT
91103488 TGCAAAGAACAGT
1 TGCAAAGAACAGT
91103501 AGAAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TGCAAAGAACAGT
Found at i:91105685 original size:41 final size:41
Alignment explanation
Indices: 91105640--91105757 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91105630 TGAAAGATAA
91105640 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91105681 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91105711 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91105752 ATGTAG
1 ATGTAG
91105758 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91105696 original size:71 final size:71
Alignment explanation
Indices: 91105608--91105771 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91105598 GAGATGTATC
91105608 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91105673 AGGACA
66 AGGACA
91105679 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91105744 AGGACA
66 AGGACA
91105750 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91105772 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91113260 original size:41 final size:41
Alignment explanation
Indices: 91113215--91113332 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91113205 TGAAAGATAA
91113215 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91113256 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91113286 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91113327 ATGTAG
1 ATGTAG
91113333 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91113271 original size:71 final size:71
Alignment explanation
Indices: 91113183--91113346 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91113173 GAGATGTATC
91113183 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91113248 AGGACA
66 AGGACA
91113254 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91113319 AGGACA
66 AGGACA
91113325 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91113347 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91114750 original size:8 final size:8
Alignment explanation
Indices: 91114739--91114775 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
91114729 TCCTTTTTTC
91114739 TATTTTAT
1 TATTTTAT
91114747 TATTTTAT
1 TATTTTAT
91114755 TATTTTAT
1 TATTTTAT
91114763 TATTTTAT
1 TATTTTAT
91114771 TATTT
1 TATTT
91114776 ACAATTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:91122011 original size:65 final size:65
Alignment explanation
Indices: 91121907--91122063 Score: 287
Period size: 65 Copynumber: 2.4 Consensus size: 65
91121897 AAAGCTATTC
* *
91121907 CTTCGTGAGGTCTTCACCTCCGTATAGGATAGTGGATCACTTTTGGGATACATCTGTACCTATGT
1 CTTCGTGAGGTCTTCACCTCCGTATAGGATAGTGGATCACTTTTGGGATACATCCGTACCTATGG
91121972 CTTCGTGAGGTCTTCACCTCCGTATAGGATAGTGGATCACTTTTGGGATACATCCGTACCTATGG
1 CTTCGTGAGGTCTTCACCTCCGTATAGGATAGTGGATCACTTTTGGGATACATCCGTACCTATGG
*
91122037 CTTCGTGAGGTCTTCACCTTCGTATAG
1 CTTCGTGAGGTCTTCACCTCCGTATAG
91122064 CCATAGGGAA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 89 1.00
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (65 bp):
CTTCGTGAGGTCTTCACCTCCGTATAGGATAGTGGATCACTTTTGGGATACATCCGTACCTATGG
Found at i:91123775 original size:42 final size:42
Alignment explanation
Indices: 91123704--91123841 Score: 161
Period size: 44 Copynumber: 3.2 Consensus size: 42
91123694 TCTTACTTGT
* * * * *
91123704 AATCAAATATCGATGCCACTGTCCTAGACAAGGTCTTATACGA
1 AATCAAATA-CGATGCTAATGTCCCAGACATGGTCTTACACGA
*
91123747 AATCAAATACGATGCTGATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATACGATGCTAATGTCCCAGACATGGTCTTACACG-A
* *
91123790 AATCTCAAAT-TGATGCTAATGTCCCAGACGTGGTCTTACACGA
1 AA--TCAAATACGATGCTAATGTCCCAGACATGGTCTTACACGA
91123833 AATCAAATA
1 AATCAAATA
91123842 TCGAAATCCT
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
41 6 0.07
42 26 0.32
43 15 0.18
44 29 0.35
45 6 0.07
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
AATCAAATACGATGCTAATGTCCCAGACATGGTCTTACACGA
Found at i:91125793 original size:20 final size:21
Alignment explanation
Indices: 91125758--91125797 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
91125748 CACCTAATGA
91125758 ATTTATTTCTTAAACAAAAAG
1 ATTTATTTCTTAAACAAAAAG
*
91125779 ATTTA-TTCTTGAACAAAAA
1 ATTTATTTCTTAAACAAAAA
91125798 TGAAGGCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
ATTTATTTCTTAAACAAAAAG
Found at i:91126839 original size:10 final size:10
Alignment explanation
Indices: 91126824--91126856 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
91126814 ACATTAAAAA
91126824 ATATACATAT
1 ATATACATAT
91126834 ATATACATAT
1 ATATACATAT
91126844 ATATACATAT
1 ATATACATAT
91126854 ATA
1 ATA
91126857 ATAAACATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (10 bp):
ATATACATAT
Found at i:91126875 original size:3 final size:3
Alignment explanation
Indices: 91126869--91126919 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
91126859 AAACATATAC
*
91126869 TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
91126917 TAA
1 TAA
91126920 GATGCATACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:91127646 original size:17 final size:17
Alignment explanation
Indices: 91127605--91127646 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
91127595 ATAACATTAA
*
91127605 AAATATATATAATATAT
1 AAATATATACAATATAT
*
91127622 AAACATATACAATATAT
1 AAATATATACAATATAT
*
91127639 ACATATAT
1 AAATATAT
91127647 TGGAGATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATATACAATATAT
Found at i:91127838 original size:20 final size:19
Alignment explanation
Indices: 91127813--91127859 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
91127803 AGAAAACGAG
91127813 ACAAAAAA-AAACTAAGTATA
1 ACAAAAAATAAACTAA-TA-A
*
91127833 ACAAAATAATAAAGTAATAA
1 ACAAAA-AATAAACTAATAA
91127853 ACAAAAA
1 ACAAAAA
91127860 GGACTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 13 0.54
21 4 0.17
22 6 0.25
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.15
Consensus pattern (19 bp):
ACAAAAAATAAACTAATAA
Found at i:91128403 original size:18 final size:22
Alignment explanation
Indices: 91128380--91128422 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 22
91128370 AGGTAATTTT
91128380 TATTTT-TT-TAT-TTTAT-TA
1 TATTTTATTATATGTTTATATA
91128398 TATTTTATTATATGTTTATATA
1 TATTTTATTATATGTTTATATA
91128420 TAT
1 TAT
91128423 ACGTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 3 0.14
21 5 0.24
22 5 0.24
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (22 bp):
TATTTTATTATATGTTTATATA
Found at i:91128440 original size:12 final size:10
Alignment explanation
Indices: 91128380--91128422 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
91128370 AGGTAATTTT
91128380 TATTTT-TT-
1 TATTTTATTA
91128388 TATTTTATTA
1 TATTTTATTA
91128398 TATTTTATTA
1 TATTTTATTA
91128408 TATGTTTATATA
1 TAT-TTTAT-TA
91128420 TAT
1 TAT
91128423 ACGTATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 6 0.19
9 2 0.06
10 13 0.42
11 5 0.16
12 5 0.16
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (10 bp):
TATTTTATTA
Found at i:91129104 original size:29 final size:29
Alignment explanation
Indices: 91129062--91129119 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
91129052 TAATGTAAAT
*
91129062 GGGCCAAAATTAGCCTATAACAGTTGCCC
1 GGGCCAAAATTAGCCTATAACAGCTGCCC
91129091 GGGCCAAAATTAGCCTATAACAGCTGCCC
1 GGGCCAAAATTAGCCTATAACAGCTGCCC
91129120 CTCTTTGCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (29 bp):
GGGCCAAAATTAGCCTATAACAGCTGCCC
Found at i:91129789 original size:73 final size:74
Alignment explanation
Indices: 91129658--91129800 Score: 218
Period size: 73 Copynumber: 1.9 Consensus size: 74
91129648 CAGACATTAA
*
91129658 AAACAGAAATTGAAAATAGCTCAGCGCATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCG-ATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
91129723 GATTTTTGAC
65 GATTTTTGAC
* * *
91129733 AAACAGAAATTTAAAATACCTCAGCG-TG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCGATGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTT
91129796 GATTT
65 GATTT
91129801 AAAAACAGAC
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
72 2 0.03
73 37 0.59
75 24 0.38
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (74 bp):
AAACAGAAATTGAAAATACCTCAGCGATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAC
Found at i:91130000 original size:15 final size:15
Alignment explanation
Indices: 91129980--91130012 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
91129970 TTGATTTTTG
*
91129980 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
91129995 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
91130010 AAA
1 AAA
91130013 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:91130045 original size:88 final size:87
Alignment explanation
Indices: 91129728--91130364 Score: 457
Period size: 87 Copynumber: 7.1 Consensus size: 87
91129718 GAGTTGATTT
* * *
91129728 TTGACAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91129793 GTTGA--TTT-AAAAACAGACA
66 GTTGATTTTTGAAAAACATAAA
* * * * *
91129812 TT--AAAACAGAAATTGAAAGTAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
* ** * *
91129874 TGAGTTGGCTTTTTTTTTAAAACTTAAT
63 TGAGTT-G--ATTTTTGAAAAACATAAA
* ** * *
91129902 TTGAAAAGCCA-ATTTTGAAAGTACCTC-GACATGTGACCC-GAGGCTCAACTTACCTCTCGCAA
1 TTGAAAA-ACAGAAATTGAAAATACCTCAG-C--GTG-CCCTGAGGCTCAACTCACCTCTCGCAA
* *
91129964 TATAAGTTGATTTTTGAAAAATATAAA
61 TATGAGTTGATTTTTGAAAAACATAAA
* **
91129991 TTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCATAATATG
1 TTG-AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91130056 AGTTGATTTTTGAAAAGCATAAA
65 AGTTGATTTTTGAAAAACATAAA
* * * *
91130079 TTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCCCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91130144 GTTGATTTTTTTGAAAAGCAGAAT
66 GTTGA--TTTTTGAAAAACATAAA
* ** * *** * * * * *
91130168 TTGAAAAGCAGAAATTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 TTGAAAAACAGAAATTG-AAAAT---ACCTCAGCGTGCC-CTGAG-G--CTCA---AC---TCAC
* * * *
91130233 CTCTCGCAATATGAGTTGATTTTTTTGACAAGCAGAAT
52 CTCTCGCAATATGAGTTGA--TTTTTGAAAAACATAAA
* *
91130271 TTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91130336 GTTGATTTTTGGAAAAA-AGAAA
66 GTTGATTTTT-GAAAAACATAAA
91130358 TTGAAAA
1 TTGAAAA
91130365 TACCTCAACG
Statistics
Matches: 440, Mismatches: 78, Indels: 67
0.75 0.13 0.11
Matches are distributed among these distances:
82 21 0.05
84 35 0.08
85 3 0.01
87 79 0.18
88 54 0.12
89 72 0.16
90 32 0.07
91 3 0.01
92 50 0.11
93 7 0.02
94 3 0.01
95 4 0.01
97 4 0.01
98 3 0.01
99 7 0.02
100 1 0.00
102 5 0.01
103 57 0.13
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACATAAA
Found at i:91130172 original size:14 final size:14
Alignment explanation
Indices: 91130153--91130188 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
91130143 AGTTGATTTT
91130153 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
91130167 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
91130181 ATTGAAAA
1 TTTGAAAA
91130189 ATGGAAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:91130243 original size:103 final size:103
Alignment explanation
Indices: 91130064--91130291 Score: 411
Period size: 103 Copynumber: 2.2 Consensus size: 103
91130054 TGAGTTGATT
* *
91130064 TTTGAAAAGCATAAATTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
1 TTTGAAAAGCAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
91130129 CCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAA
66 CCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAA
*
91130167 TTTGAAAAGCAGAAATTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
1 TTTGAAAAGCAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
* *
91130232 CCTCTCGCAATATGAGTTGATTTTTTTGACAAGCAGAA
66 CCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAA
91130270 TTTGAAAAGCAGAAATTGAAAA
1 TTTGAAAAGCAGAAATTGAAAA
91130292 TACCTCAGCA
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 120 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (103 bp):
TTTGAAAAGCAGAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
CCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAA
Found at i:91130279 original size:14 final size:14
Alignment explanation
Indices: 91130256--91130291 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91130246 AGTTGATTTT
*
91130256 TTTGACAAGCAGAA
1 TTTGAAAAGCAGAA
91130270 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
91130284 ATTGAAAA
1 TTTGAAAA
91130292 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:91130318 original size:89 final size:89
Alignment explanation
Indices: 91130167--91130364 Score: 301
Period size: 89 Copynumber: 2.2 Consensus size: 89
91130157 AAAAGCAGAA
** * *
91130167 TTTGAAAAGCAGAAATTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
1 TTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCA
91130232 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* * *
91130256 TTTGACAAGCAGAATTTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCA
1 TTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCA
91130321 CCTCTCGCAATATGAGTTGA-TTT
66 CCTCTCGCAATATGAGTTGATTTT
* *
91130344 TTGGAAAA-AAGAAATTGAAAA
1 TTTGAAAAGCAGAAATTGAAAA
91130365 TACCTCAACG
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 11 0.11
88 9 0.09
89 78 0.80
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (89 bp):
TTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTT
Found at i:91130334 original size:192 final size:191
Alignment explanation
Indices: 91129988--91130345 Score: 574
Period size: 192 Copynumber: 1.9 Consensus size: 191
91129978 TGAAAAATAT
*
91129988 AAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCATAAT
1 AAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAAT
* * * * *
91130053 ATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTGA
66 ATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGA
91130118 GGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAATTTGAAAAGCAG
131 GGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAATTTGAAAAGCAG
* * *
91130179 AAATTG-AAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAAT
* * *
91130243 ATGAGTTGATTTTTTTGACAAGCAGAATTTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCCT
66 ATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCT
*
91130308 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
129 GAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTT
91130346 GGAAAAAAGA
Statistics
Matches: 152, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
190 63 0.41
191 6 0.04
192 83 0.55
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (191 bp):
AAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAAT
ATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGA
GGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTTGAAAAGCAGAATTTGAAAAGCAG
Found at i:91130399 original size:73 final size:73
Alignment explanation
Indices: 91130280--91130418 Score: 242
Period size: 73 Copynumber: 1.9 Consensus size: 73
91130270 TTTGAAAAGC
* *
91130280 AGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTT
91130345 TGGAAAAA
66 TGGAAAAA
* *
91130353 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTT
1 AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTT
91130418 T
66 T
91130419 TTTTGAAAAC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTT
TGGAAAAA
Found at i:91139982 original size:18 final size:18
Alignment explanation
Indices: 91139959--91139995 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
91139949 TGAGACCCAA
91139959 TGCTCTTCGGTGACATCC
1 TGCTCTTCGGTGACATCC
91139977 TGCTCTTCGGTGACATCC
1 TGCTCTTCGGTGACATCC
91139995 T
1 T
91139996 TTGGCCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.22, T:0.35
Consensus pattern (18 bp):
TGCTCTTCGGTGACATCC
Found at i:91141887 original size:20 final size:21
Alignment explanation
Indices: 91141852--91141891 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
91141842 CACCTAATGA
91141852 ATTTATTTCTTAAACAAAAAG
1 ATTTATTTCTTAAACAAAAAG
*
91141873 ATTTA-TTCTTGAACAAAAA
1 ATTTATTTCTTAAACAAAAA
91141892 TGAAGGCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
ATTTATTTCTTAAACAAAAAG
Found at i:91142452 original size:2 final size:2
Alignment explanation
Indices: 91142445--91142479 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
91142435 TGTGCGTAAA
91142445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91142480 AATAGTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91142948 original size:10 final size:10
Alignment explanation
Indices: 91142933--91142957 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
91142923 ACATTAAAAA
91142933 ATATATACAT
1 ATATATACAT
91142943 ATATATACAT
1 ATATATACAT
91142953 ATATA
1 ATATA
91142958 ATATACTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATACAT
Found at i:91142967 original size:8 final size:7
Alignment explanation
Indices: 91142943--91143010 Score: 69
Period size: 6 Copynumber: 10.4 Consensus size: 7
91142933 ATATATACAT
91142943 ATATATA
1 ATATATA
91142950 CATATATA
1 -ATATATA
91142958 ATATACTA
1 ATATA-TA
91142966 ATA-ATA
1 ATATATA
91142972 ATA-ATA
1 ATATATA
91142978 ATA-ATA
1 ATATATA
91142984 ATA-ATA
1 ATATATA
91142990 ATA-ATA
1 ATATATA
91142996 ATA-ATA
1 ATATATA
91143002 ATA-ATA
1 ATATATA
91143008 ATA
1 ATA
91143011 AGATGCATAC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
6 41 0.69
7 6 0.10
8 12 0.20
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (7 bp):
ATATATA
Found at i:91142972 original size:3 final size:3
Alignment explanation
Indices: 91142955--91143011 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
91142945 ATATACATAT
*
91142955 ATA AT- ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91143002 ATA ATA ATA A
1 ATA ATA ATA A
91143012 GATGCATACG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91143713 original size:9 final size:8
Alignment explanation
Indices: 91143675--91143739 Score: 53
Period size: 8 Copynumber: 8.0 Consensus size: 8
91143665 AATAGTAAAG
91143675 AAATATA-
1 AAATATAT
*
91143682 AAATAAAT
1 AAATATAT
*
91143690 AACAT-TAA
1 AA-ATATAT
91143698 AAATATAT
1 AAATATAT
91143706 ATAATATAT
1 A-AATATAT
*
91143715 AAACATAT
1 AAATATAT
91143723 ACAATATAT
1 A-AATATAT
*
91143732 ACATATAT
1 AAATATAT
91143740 TGGAGATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
7 8 0.17
8 21 0.46
9 17 0.37
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (8 bp):
AAATATAT
Found at i:91143739 original size:17 final size:17
Alignment explanation
Indices: 91143698--91143739 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
91143688 ATAACATTAA
*
91143698 AAATATATATAATATAT
1 AAATATATACAATATAT
*
91143715 AAACATATACAATATAT
1 AAATATATACAATATAT
*
91143732 ACATATAT
1 AAATATAT
91143740 TGGAGATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATATACAATATAT
Found at i:91144488 original size:16 final size:17
Alignment explanation
Indices: 91144464--91144496 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
91144454 GAAAAAGGTA
*
91144464 ATTTTTTATTAT-TTTT
1 ATTTATTATTATATTTT
91144480 ATTTATTATTATATTTT
1 ATTTATTATTATATTTT
91144497 TATATGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTATTATTATATTTT
Found at i:91146832 original size:29 final size:28
Alignment explanation
Indices: 91146800--91146902 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
91146790 GTGACGAGAT
* *
91146800 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
91146829 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
91146858 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
91146887 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91146903 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:91154629 original size:29 final size:28
Alignment explanation
Indices: 91154597--91154699 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
91154587 GTGACGAGAT
* *
91154597 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
91154626 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
91154655 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
91154684 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91154700 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:91158473 original size:24 final size:24
Alignment explanation
Indices: 91158440--91158487 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
91158430 TACTATTAGA
91158440 ATGAACTTGATTGATTTATGATTT
1 ATGAACTTGATTGATTTATGATTT
*
91158464 ATGAATTTGATTGATTTATGATTT
1 ATGAACTTGATTGATTTATGATTT
91158488 TTATTGATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (24 bp):
ATGAACTTGATTGATTTATGATTT
Found at i:91158478 original size:17 final size:17
Alignment explanation
Indices: 91158458--91158495 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
91158448 GATTGATTTA
91158458 TGATTTATGAATTTGAT
1 TGATTTATGAATTTGAT
* *
91158475 TGATTTATGATTTTTAT
1 TGATTTATGAATTTGAT
91158492 TGAT
1 TGAT
91158496 ATGTTTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (17 bp):
TGATTTATGAATTTGAT
Found at i:91159255 original size:19 final size:19
Alignment explanation
Indices: 91159231--91159268 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
91159221 TTGTAATTCA
91159231 GCAATTAGCTTCATTTGTC
1 GCAATTAGCTTCATTTGTC
91159250 GCAATTAGCTTCATTTGTC
1 GCAATTAGCTTCATTTGTC
91159269 TAAGTTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.42
Consensus pattern (19 bp):
GCAATTAGCTTCATTTGTC
Found at i:91169765 original size:11 final size:11
Alignment explanation
Indices: 91169749--91169774 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91169739 CATAGGAGAC
91169749 AAAGGGATAGA
1 AAAGGGATAGA
91169760 AAAGGGATAGA
1 AAAGGGATAGA
91169771 AAAG
1 AAAG
91169775 TCAATGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (11 bp):
AAAGGGATAGA
Found at i:91171449 original size:29 final size:27
Alignment explanation
Indices: 91171415--91171517 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
91171405 TACTCAATCA
*
91171415 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
91171444 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
91171473 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
91171502 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91171518 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:91178634 original size:29 final size:27
Alignment explanation
Indices: 91178600--91178702 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
91178590 TACTCAATCA
*
91178600 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
91178629 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
91178658 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
91178687 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91178703 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:91187915 original size:40 final size:40
Alignment explanation
Indices: 91187858--91188073 Score: 314
Period size: 40 Copynumber: 5.4 Consensus size: 40
91187848 GATGATAACG
91187858 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
91187898 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
91187938 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
91187978 GGGCTAAGTCCCGAAGGCATTTGTGCAAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
91188018 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
91188058 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
91188074 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:91191302 original size:25 final size:24
Alignment explanation
Indices: 91191242--91191302 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 24
91191232 TATCATTTAT
*
91191242 GCTCT-TTCGAGTTATGATCAGTAA
1 GCTCTATT-GAGTTATGAACAGTAA
91191266 GCTC-ATCCTGAGTTGATGAACAGTAA
1 GCTCTAT--TGAGTT-ATGAACAGTAA
91191292 GCTCTATTGAG
1 GCTCTATTGAG
91191303 CTGAAATGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
24 5 0.16
25 9 0.29
26 15 0.48
27 2 0.06
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (24 bp):
GCTCTATTGAGTTATGAACAGTAA
Found at i:91195633 original size:44 final size:45
Alignment explanation
Indices: 91195583--91195786 Score: 197
Period size: 44 Copynumber: 4.6 Consensus size: 45
91195573 CTATTATAGT
*
91195583 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA-TGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATTGAAGCTAC
** * * * *
91195627 AAATCTTATCTCTTTGAAGTTGTAGTGGA--ACAGATTAAACCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTA-AGATTGAAGCTAC
*
91195671 AAATCTTATCTCCCTAAAGTTGCAGTGGAGT-AGATTGAAGCAAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATTGAAGCTAC
* * * * *
91195715 AAGTCTTATTTCCCTAAAGTTACAGTGG-G-AAAATATGAGGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGAT-TGAAGCTAC
* * *
91195759 AACTCTTA-ATCCCTAAAATTGCAGTGGA
1 AAATCTTATCTCCCTAAAGTTGCAGTGGA
91195787 TTGGATTGGA
Statistics
Matches: 131, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
42 1 0.01
43 23 0.18
44 107 0.82
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (45 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATTGAAGCTAC
Found at i:91195654 original size:89 final size:86
Alignment explanation
Indices: 91195489--91195723 Score: 217
Period size: 89 Copynumber: 2.7 Consensus size: 86
91195479 TGAAATCACC
* *
91195489 ATAGCAAATCTTATCTCTCGGAAGTTGCAGTGGAGTAGATTTG-AGCTACAAATCCTGTA-CCTC
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTGAAGCTACAAAT-CT-TATCCTC
**** *
91195552 TAAACTGGCAGTGGGTGGGATCTATT
63 TAAACTGGCAGTGGAACAGAT-TA-A
* *
91195578 ATAGTAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA-TGAAGCTACAAATCTTATCTCTTT
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGT-AGATTGAAGCTACAAATCTTATC-CTCT
* * * *
91195642 GAAGTTGTAGTGGAACAGATTAA
64 AAACTGGCAGTGGAACAGATTAA
* * *
91195665 ACCTA-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCAACAAGTCTTAT
1 A--TAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTAT
91195724 TTCCCTAAAG
Statistics
Matches: 122, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
87 6 0.05
88 53 0.43
89 60 0.49
90 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (86 bp):
ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCCTCTAA
ACTGGCAGTGGAACAGATTAA
Found at i:91197368 original size:4 final size:4
Alignment explanation
Indices: 91197359--91197401 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
91197349 TTTTATGAAT
* *
91197359 TTTA TTTA TTTA TTTA TTTA TCTA TTTA TTTA -TTA TTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
91197402 CCTCTATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:91199285 original size:8 final size:9
Alignment explanation
Indices: 91199252--91199341 Score: 53
Period size: 10 Copynumber: 10.0 Consensus size: 9
91199242 AATATATTTA
91199252 TATTAAAAT
1 TATTAAAAT
*
91199261 CA-TACAAAT
1 TATTA-AAAT
91199270 TATTAAAAT
1 TATTAAAAT
*
91199279 T-TTAAAAA
1 TATTAAAAT
* *
91199287 AATATAAAAC
1 TAT-TAAAAT
*
91199297 T-GTAAAAT
1 TATTAAAAT
91199305 TATTATAAAT
1 TATTA-AAAT
**
91199315 T-GCAAAAT
1 TATTAAAAT
91199323 TATTAAAATT
1 TATTAAAA-T
91199333 TATTAAAAT
1 TATTAAAAT
91199342 AATAGAGAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
8 19 0.32
9 20 0.33
10 21 0.35
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (9 bp):
TATTAAAAT
Found at i:91199313 original size:19 final size:18
Alignment explanation
Indices: 91199293--91199327 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91199283 AAAAAATATA
*
91199293 AAACTGTAAAATTATTAT
1 AAACTGCAAAATTATTAT
*
91199311 AAATTGCAAAATTATTA
1 AAACTGCAAAATTATTA
91199328 AAATTTATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (18 bp):
AAACTGCAAAATTATTAT
Found at i:91199408 original size:19 final size:18
Alignment explanation
Indices: 91199357--91199432 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
91199347 AGAATTACAA
*
91199357 AAAAATAATATAAAATTAT
1 AAAAATAAT-TAAAAATAT
* *
91199376 GAACAAT-ATAAAAAATAT
1 -AAAAATAATTAAAAATAT
* *
91199394 AAAAAATATTTAAAAGCTAT
1 -AAAAATAATTAAAA-ATAT
91199414 AAAAATAATTACAAAATAT
1 AAAAATAATTA-AAAATAT
91199433 TACTCAAAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
18 12 0.28
19 20 0.47
20 11 0.26
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAATTAAAAATAT
Found at i:91232652 original size:20 final size:20
Alignment explanation
Indices: 91232627--91232673 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
91232617 GATTTGATAT
91232627 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
91232647 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91232667 ACATGAT
1 ACATGAT
91232674 GTATTCATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91232812 original size:24 final size:24
Alignment explanation
Indices: 91232721--91232828 Score: 137
Period size: 25 Copynumber: 4.4 Consensus size: 24
91232711 AGGAAGTGCA
* *
91232721 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
91232745 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
91232771 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
91232796 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
91232819 AAAAGAGGCT
1 AAAAG-GGCT
91232829 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 40 0.53
26 13 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:91240662 original size:25 final size:25
Alignment explanation
Indices: 91240634--91240681 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91240624 TTATATTATG
* * *
91240634 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
91240659 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
91240682 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:91240742 original size:20 final size:20
Alignment explanation
Indices: 91240717--91240763 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
91240707 GATTTGATAT
91240717 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
91240737 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91240757 ACATGAT
1 ACATGAT
91240764 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91240902 original size:24 final size:24
Alignment explanation
Indices: 91240811--91240918 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
91240801 AGGAAGTGCA
* * *
91240811 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
91240835 GAAAAGGCCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
91240861 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
91240886 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
91240909 AAAAGAGGCT
1 AAAAG-GGCT
91240919 AGGCCTCCAG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 38 0.52
26 12 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:91241162 original size:31 final size:31
Alignment explanation
Indices: 91241127--91241186 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
91241117 CGTTTACAGT
*
91241127 AAAGGCTTCGGCCCAGTCATATGAAATATTA
1 AAAGGCTTCGACCCAGTCATATGAAATATTA
**
91241158 AAAGGCTTCGACCCAGTGTTATGAAATAT
1 AAAGGCTTCGACCCAGTCATATGAAATAT
91241187 GAAATATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTCATATGAAATATTA
Found at i:91245064 original size:29 final size:29
Alignment explanation
Indices: 91244974--91245133 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
91244964 ACTCGATTTC
* * **
91244974 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
91245003 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
91245031 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
91245061 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
91245090 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
91245119 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
91245134 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:91250377 original size:40 final size:40
Alignment explanation
Indices: 91250311--91250477 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
91250301 AAATTGAATG
* * * *
91250311 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
91250350 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
91250390 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
91250430 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
91250470 ATATCCGG
1 ATATCCGG
91250478 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 15 0.15
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:91258310 original size:40 final size:40
Alignment explanation
Indices: 91258182--91258312 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
91258172 TATGCTGGAA
* * *
91258182 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
91258222 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
* *
91258262 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTTC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
91258302 ATTATATCCGG
1 ATTATATCCGG
91258313 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.03
40 71 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:91264480 original size:28 final size:28
Alignment explanation
Indices: 91264448--91264538 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
91264438 AATTAAAAAA
91264448 AGCCTTTATGGTGAACTTTGAAAAGAAT
1 AGCCTTTATGGTGAACTTTGAAAAGAAT
* * *
91264476 AGCCTTTATGGAGAACTTTGAATAGTAT
1 AGCCTTTATGGTGAACTTTGAAAAGAAT
* * *
91264504 AACCTGTATGGCT-AACTCTGAAAAGGAAT
1 AGCCTTTATGG-TGAACTTTGAAAA-GAAT
91264533 -GCCTTT
1 AGCCTTT
91264539 GTGGCAAACT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 47 0.94
29 3 0.06
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (28 bp):
AGCCTTTATGGTGAACTTTGAAAAGAAT
Found at i:91266679 original size:59 final size:61
Alignment explanation
Indices: 91266608--91266724 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
91266598 ATCTCTTTCA
* * * * *
91266608 TATTAAATTAATATAATATTTAT-T-AAGCTAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATATAATATTTATCTAAAGATAAACAGTAAATTAAATTTAATATTAAATCT
91266667 TATTAAAATAATATAATATTTATCTACAAGATAAACAGTAAATTAAATTTAATATTAA
1 TATTAAAATAATATAATATTTATCTA-AAGATAAACAGTAAATTAAATTTAATATTAA
91266725 GATAATCGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
62 27 0.54
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.42
Consensus pattern (61 bp):
TATTAAAATAATATAATATTTATCTAAAGATAAACAGTAAATTAAATTTAATATTAAATCT
Found at i:91268509 original size:40 final size:40
Alignment explanation
Indices: 91268456--91268603 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
91268446 TATAACCAAA
* * *** *
91268456 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
91268496 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
91268536 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
91268576 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
91268604 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 91 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:91276509 original size:40 final size:40
Alignment explanation
Indices: 91276449--91276612 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
91276439 CGGGATTTAA
** * *
91276449 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* ** *
91276489 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* *
91276529 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
91276569 CCGGATATAATAACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
91276609 CCGG
1 CCGG
91276613 GTATCATTCA
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
Done.