Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 294 of 425
Found at i:91276583 original size:80 final size:80
Alignment explanation
Indices: 91276435--91276612 Score: 216
Period size: 80 Copynumber: 2.2 Consensus size: 80
91276425 GAATCACGTA
* * * * **
91276435 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
91276499 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
91276514 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
*
91276578 ATAACTAGCATAAATG
65 ATAACTAGCACAAATG
91276594 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91276613 GTATCATTCA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 11 0.13
80 70 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:91276837 original size:17 final size:17
Alignment explanation
Indices: 91276815--91276849 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
91276805 CGAGCATTTT
91276815 CGACGGCTACTCGACTA
1 CGACGGCTACTCGACTA
91276832 CGACGGCTACTCGACTA
1 CGACGGCTACTCGACTA
91276849 C
1 C
91276850 TTTTTCCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.37, G:0.23, T:0.17
Consensus pattern (17 bp):
CGACGGCTACTCGACTA
Found at i:91279459 original size:21 final size:19
Alignment explanation
Indices: 91279425--91279486 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
91279415 TAAGTTATGT
91279425 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
91279447 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
91279469 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
91279487 GTATCTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:91279545 original size:14 final size:14
Alignment explanation
Indices: 91279528--91279557 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91279518 TTAGTATAAA
*
91279528 AATAAATAATATAT
1 AATAAAAAATATAT
91279542 AATAAAAAATATAT
1 AATAAAAAATATAT
91279556 AA
1 AA
91279558 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:91279610 original size:18 final size:18
Alignment explanation
Indices: 91279587--91279627 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
91279577 GAATATTGAA
91279587 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
91279605 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
91279623 AAATA
1 TAATA
91279628 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:91280006 original size:14 final size:14
Alignment explanation
Indices: 91279976--91280050 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
91279966 ACAATTTTAA
91279976 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
91279988 GAAATATATAAAAT
1 AAAATATATAAAAT
*
91280002 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
91280016 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
91280032 AAAATATATGATAAT
1 AAAATATAT-AAAAT
91280047 AAAA
1 AAAA
91280051 AAATAATGGA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:91280053 original size:18 final size:18
Alignment explanation
Indices: 91280032--91280066 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
91280022 ATTTATAGAT
91280032 AAAATATAT-GATAATAAA
1 AAAATA-ATGGATAATAAA
91280050 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
91280067 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
AAAATAATGGATAATAAA
Found at i:91289251 original size:24 final size:24
Alignment explanation
Indices: 91289221--91289269 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91289211 GAACATGCCT
91289221 TTGAGTCTGTCTTGAAATAGTTTC
1 TTGAGTCTGTCTTGAAATAGTTTC
91289245 TTGAGTCTGTCTTGAAATAGTTTC
1 TTGAGTCTGTCTTGAAATAGTTTC
91289269 T
1 T
91289270 ACCTTATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.47
Consensus pattern (24 bp):
TTGAGTCTGTCTTGAAATAGTTTC
Found at i:91291751 original size:22 final size:22
Alignment explanation
Indices: 91291715--91291759 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
91291705 TTGATGTTCT
91291715 AGTTGGAATTGTAATGTGTCTAA
1 AGTTGGAATTGTAATGTGT-TAA
*
91291738 AGTTGGTA-TGTAATGTGTTAA
1 AGTTGGAATTGTAATGTGTTAA
91291759 A
1 A
91291760 CTTAATGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.27, T:0.40
Consensus pattern (22 bp):
AGTTGGAATTGTAATGTGTTAA
Found at i:91295390 original size:14 final size:15
Alignment explanation
Indices: 91295356--91295390 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
91295346 ATAGAGGTAG
91295356 GATTCTGTATATTCT
1 GATTCTGTATATTCT
91295371 GA-TCTGTATA-TCT
1 GATTCTGTATATTCT
91295384 GATTCTG
1 GATTCTG
91295391 ATGACTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 12 0.63
15 2 0.11
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (15 bp):
GATTCTGTATATTCT
Found at i:91301825 original size:93 final size:93
Alignment explanation
Indices: 91301718--91301889 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
91301708 CGCCCATAAG
* *
91301718 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTCCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91301783 ACGAGTTCGGATGCCTAGTTACATCTCA
66 AAGAGTTCGGATGCCTAGTTACATCTCA
* * *
91301811 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
91301876 AAGAGTTCGGATGC
66 AAGAGTTCGGATGC
91301890 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
AAGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91301886 original size:46 final size:46
Alignment explanation
Indices: 91301711--91301886 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
91301701 TGTAACCCGC
* * * * *
91301711 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91301757 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91301807 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91301850 CCATAAGTGAACTCGGACTCAACTCAAAGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91301887 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91301905 original size:46 final size:44
Alignment explanation
Indices: 91301762--91301905 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
91301752 CGCATCCATA
91301762 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
91301809 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
91301855 AGTGAACTCGGACTCAACTCAAAGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
91301901 AGTGA
1 AGTGA
91301906 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:91304791 original size:17 final size:18
Alignment explanation
Indices: 91304766--91304805 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
91304756 AGACCAATTT
91304766 GGGCATGTAGG-CCACAC
1 GGGCATGTAGGCCCACAC
*
91304783 GGGCTTGTAGGCCCACAC
1 GGGCATGTAGGCCCACAC
*
91304801 AGGCA
1 GGGCA
91304806 AGCCACCCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (18 bp):
GGGCATGTAGGCCCACAC
Found at i:91306175 original size:18 final size:18
Alignment explanation
Indices: 91306154--91306199 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
91306144 AGTAATTTAA
91306154 TTCTTTTTCTTTTAACTT
1 TTCTTTTTCTTTTAACTT
91306172 TTCTTTTT-TTTTAACTT
1 TTCTTTTTCTTTTAACTT
91306189 TT-TTTTTCTTT
1 TTCTTTTTCTTT
91306200 AGATTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 14 0.52
18 8 0.30
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (18 bp):
TTCTTTTTCTTTTAACTT
Found at i:91306824 original size:16 final size:16
Alignment explanation
Indices: 91306805--91306846 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
91306795 ATTTAATTTT
91306805 TTTTTTATTTTTAAAA
1 TTTTTTATTTTTAAAA
* *
91306821 TTTTATGA-ATTTAAAA
1 TTTT-TTATTTTTAAAA
91306837 TTTTTTATTT
1 TTTTTTATTT
91306847 AATTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 4
0.71 0.14 0.14
Matches are distributed among these distances:
15 2 0.10
16 16 0.80
17 2 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTTTTATTTTTAAAA
Found at i:91311461 original size:4 final size:4
Alignment explanation
Indices: 91311444--91311473 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
91311434 TATTGTTTTC
*
91311444 AATT AATA AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
91311474 AACTAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (4 bp):
AATT
Found at i:91315588 original size:26 final size:26
Alignment explanation
Indices: 91315552--91315603 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
91315542 AATTATGGTG
91315552 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
91315578 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
91315604 AATTTAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (26 bp):
TTAAATTCTTATGTGTCACCCATGTC
Found at i:91315715 original size:2 final size:2
Alignment explanation
Indices: 91315708--91315746 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
91315698 AAAAGGGTTT
91315708 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91315747 TTAATTTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91316228 original size:2 final size:2
Alignment explanation
Indices: 91316223--91316249 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
91316213 GTCTCTCTTT
91316223 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
91316250 GTACTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91319396 original size:3 final size:3
Alignment explanation
Indices: 91319388--91319434 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
91319378 TTTCATTCTG
91319388 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
91319435 TCTGCATTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:91328353 original size:37 final size:36
Alignment explanation
Indices: 91328306--91328375 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
91328296 CACTTTAATA
91328306 TTAAATTAATA-AAATACTATTAACATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAACATAA-TATTAAAT
* *
91328343 TTAATTTAATATTAAACTATTAACATAATATTA
1 TTAAATTAATATAAAACTATTAACATAATATTA
91328376 TTTTTGGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 5 0.17
37 23 0.77
38 2 0.07
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAACATAATATTAAAT
Found at i:91332067 original size:2 final size:2
Alignment explanation
Indices: 91332060--91332098 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
91332050 TCATGACATG
91332060 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91332099 GACTAGTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91353954 original size:3 final size:3
Alignment explanation
Indices: 91353946--91353978 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
91353936 TGTTTTTCTT
*
91353946 TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91353979 GTATAGATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:91355779 original size:46 final size:45
Alignment explanation
Indices: 91355647--91355816 Score: 134
Period size: 47 Copynumber: 3.6 Consensus size: 45
91355637 GGTCATTTGT
* *
91355647 GCGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTACGAAA
1 GCGCTAGTGTAAGACATGTCTGAGACATGCATCGG-CAT-TGA-GAAA
* *
91355695 GC-C-AGTGTAAGACCATGTCT-AGGACATGGCATCAGCATTGAGATGA
1 GCGCTAGTGTAAGA-CATGTCTGA-GACAT-GCATCGGCATTGAGA-AA
* * *
91355741 GCGCTAGTGTAAGAGATGTTTGAGACATGCATCGGCATTGAGGTGTAA
1 GCGCTAGTGTAAGACATGTCTGAGACATGCATCGGCATTGA---GAAA
*
91355789 GC-C-AGTGTAAGACCATGTCTGGGACATG
1 GCGCTAGTGTAAGA-CATGTCTGAGACATG
91355817 GCGTCGGCCT
Statistics
Matches: 99, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
45 2 0.02
46 35 0.35
47 40 0.40
48 21 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
GCGCTAGTGTAAGACATGTCTGAGACATGCATCGGCATTGAGAAA
Found at i:91355808 original size:94 final size:94
Alignment explanation
Indices: 91355647--91355818 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
91355637 GGTCATTTGT
* *
91355647 GCGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTACGAAAGCCAGTGTAAGACCATG
1 GCGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCATATGACGAAAGCCAGTGTAAGACCATG
91355712 TCTAGGACATGGCATCAGCATTGAGATGA
66 TCTAGGACATGGCATCAGCATTGAGATGA
* * * *
91355741 GCGCTAGTGTAAGAGATGTTTGAGACATGCATCGG-CAT-TGAGGTGTAAGCCAGTGTAAGACCA
1 GCGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCATATGA--CGAAAGCCAGTGTAAGACCA
*
91355804 TGTCTGGGACATGGC
64 TGTCTAGGACATGGC
91355819 GTCGGCCTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 2 0.03
93 3 0.04
94 64 0.93
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
GCGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCATATGACGAAAGCCAGTGTAAGACCATG
TCTAGGACATGGCATCAGCATTGAGATGA
Found at i:91363479 original size:46 final size:46
Alignment explanation
Indices: 91363332--91363590 Score: 224
Period size: 46 Copynumber: 5.5 Consensus size: 46
91363322 TTTGTGCGCT
* * * *
91363332 AGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCC
* * * *
91363378 AGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCC
*
91363426 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCC
* * * *
91363472 AGTGTAAGACATGTCTGGGACATGGATCGG-CTACGAGA--TGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGAGCC
* * *
91363516 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCACGGAGATTTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTC-GAGA--CGAGAGCC
*
91363566 AGTGTAAGACCATTTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
91363591 GCGTCGGCTT
Statistics
Matches: 174, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.06
45 18 0.10
46 68 0.39
47 27 0.16
48 23 0.13
49 2 0.01
50 25 0.14
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCC
Found at i:91363570 original size:94 final size:96
Alignment explanation
Indices: 91363329--91363598 Score: 310
Period size: 94 Copynumber: 2.9 Consensus size: 96
91363319 TCATTTGTGC
91363329 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC---ATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACGAGATT-TGAGAGCCAGTGTAAGACCAT
* *
91363391 GTATGGGACATGGCATCGGCATTGAGACGAGA
65 GTCTGGGACATGGCATCGGCATCGAGACGAGA
* **
91363423 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGT-A-AGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACGAGATTTGAGAGCCAGTGTAAGACCATG
* *
91363485 TCTGGGACATGG-ATCGGC-TACGAGATGTG-
66 TCTGGGACATGGCATCGGCAT-CGAGACGAGA
* * *
91363514 TC-AGTGTAAGACCATGTCTGGGACATGGCA-TCGCCACGGAGATTTGAGAGCTAGTGTAAGACC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCAC-GAGATTTGAGAGCCAGTGTAAGACC
* *
91363577 ATTTCTGGGACATGGCGTCGGC
63 ATGTCTGGGACATGGCATCGGC
91363599 TTTGATTTCG
Statistics
Matches: 150, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
90 9 0.06
91 21 0.14
92 20 0.13
93 16 0.11
94 61 0.41
95 16 0.11
96 6 0.04
97 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (96 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACGAGATTTGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATCGAGACGAGA
Found at i:91367084 original size:37 final size:37
Alignment explanation
Indices: 91367032--91367122 Score: 105
Period size: 37 Copynumber: 2.4 Consensus size: 37
91367022 GACCCACTAC
* *
91367032 GTGGTGTGTAAGGTGGAT-GGGTCTATCATGGTCCTAT-
1 GTGGTGTGTAGGGTGGATAGGCT-TATCATGG-CCTATA
*
91367069 GTGGTGTGTAGGGTGGATAGGCTTATCATTGCCTATAA
1 GTGGTGTGTAGGGTGGATAGGCTTATCATGGCCTAT-A
*
91367107 GTGGTGTGCAGGGTGG
1 GTGGTGTGTAGGGTGG
91367123 TCAGAGTAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 5 0.11
37 24 0.51
38 18 0.38
ACGTcount: A:0.16, C:0.10, G:0.41, T:0.33
Consensus pattern (37 bp):
GTGGTGTGTAGGGTGGATAGGCTTATCATGGCCTATA
Found at i:91369769 original size:8 final size:8
Alignment explanation
Indices: 91369756--91369787 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
91369746 ATAGAAAAGA
91369756 TATATGTT
1 TATATGTT
91369764 TATATGTT
1 TATATGTT
91369772 TATATGTT
1 TATATGTT
91369780 TATATGTT
1 TATATGTT
91369788 CATGTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (8 bp):
TATATGTT
Found at i:91371501 original size:43 final size:42
Alignment explanation
Indices: 91371428--91371585 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 42
91371418 ACACCACTGT
* * * **
91371428 CATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCAAATCGATGC
* * * *
91371470 CAATAGCCCA-ACTATGGTCTTACACGAAATCTCACATCAATTC
1 C-ATATCCCAGA-TATGGTCTTACACGAAATCTCAAATCGATGC
* * *
91371513 CATATCCCAGATATGGTCTTACATGAAGTCTCAAATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCAAATCGATGC
*
91371555 CATATCCCAGATATGGTCTTACACGTAATCT
1 CATATCCCAGATATGGTCTTACACGAAATCT
91371586 TAGTAACCCT
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 62 0.65
43 34 0.35
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCAAATCGATGC
Found at i:91371554 original size:85 final size:84
Alignment explanation
Indices: 91371428--91371585 Score: 221
Period size: 85 Copynumber: 1.9 Consensus size: 84
91371418 ACACCACTGT
**
91371428 CATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCA-ACTATGGTCTTA
1 CATATCCCAAATATGGTCTTACATGTAATCTCAAATCGATGCC-ATAGCCCAGA-TATGGTCTTA
91371492 CACGAAATCTCACATCAATTC
64 CACGAAATCTCACATCAATTC
* * *
91371513 CATATCCCAGATATGGTCTTACATG-AAGTCTCAAATTGATGCCATATCCCAGATATGGTCTTAC
1 CATATCCCAAATATGGTCTTACATGTAA-TCTCAAATCGATGCCATAGCCCAGATATGGTCTTAC
*
91371577 ACGTAATCT
65 ACGAAATCT
91371586 TAGTAACCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
84 28 0.43
85 37 0.57
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (84 bp):
CATATCCCAAATATGGTCTTACATGTAATCTCAAATCGATGCCATAGCCCAGATATGGTCTTACA
CGAAATCTCACATCAATTC
Found at i:91385060 original size:27 final size:27
Alignment explanation
Indices: 91385030--91385128 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
91385020 GTAGCCTAGT
91385030 ATTACTAAAATACCCTTGTAGGGTAGA
1 ATTACTAAAATACCCTTGTAGGGTAGA
* * *
91385057 ATTACTAAAATGCCCCTGTAGGATAGA
1 ATTACTAAAATACCCTTGTAGGGTAGA
* * * *
91385084 ATTAGTGAAATGCCAC-TGTAAGGTAGA
1 ATTACTAAAATACC-CTTGTAGGGTAGA
*
91385111 ATTACTAAATTACCCTTG
1 ATTACTAAAATACCCTTG
91385129 GTTTACAAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
ATTACTAAAATACCCTTGTAGGGTAGA
Found at i:91385245 original size:54 final size:52
Alignment explanation
Indices: 91385131--91385285 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 52
91385121 TACCCTTGGT
* *
91385131 TTACAAAATTATTG-AATACCCTT-AGTTTACAAAATTACTG-AATACCCCTAAT
1 TTACAAAATTA-TGAAATACCCTTGA-TTTA-AAAATTACAGAAATACCCCTAAA
** *
91385183 TTGGAAAATTACTGAAATACCTTTGATTTGAAAAATTACAGAAATACCCCTAAA
1 TTACAAAATTA-TGAAATACCCTTGATTT-AAAAATTACAGAAATACCCCTAAA
91385237 TTACAAAATTATAGAAATACCCTTGAATTTCAAAAATTACAGAAATACC
1 TTACAAAATTAT-GAAATACCCTTG-ATTT-AAAAATTACAGAAATACC
91385286 ATTGGTTTGC
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
52 11 0.13
53 21 0.24
54 33 0.38
55 22 0.25
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.31
Consensus pattern (52 bp):
TTACAAAATTATGAAATACCCTTGATTTAAAAATTACAGAAATACCCCTAAA
Found at i:91385298 original size:28 final size:27
Alignment explanation
Indices: 91385121--91385321 Score: 142
Period size: 27 Copynumber: 7.5 Consensus size: 27
91385111 ATTACTAAAT
* * **
91385121 TACCCTTGGTTTACAAAATTATTG-AA
1 TACCCTTGATTTGCAAAATTACAGAAA
* *
91385147 TACCCTT-AGTTTACAAAATTACTG-AA
1 TACCCTTGA-TTTGCAAAATTACAGAAA
* * * *
91385173 TACCCCTAATTTGGAAAATTACTGAAA
1 TACCCTTGATTTGCAAAATTACAGAAA
* *
91385200 TACCTTTGATTTGAAAAATTACAGAAA
1 TACCCTTGATTTGCAAAATTACAGAAA
* * * * *
91385227 TACCCCTAAATTACAAAATTATAGAAA
1 TACCCTTGATTTGCAAAATTACAGAAA
91385254 TACCCTTGAATTT-CAAAAATTACAGAAA
1 TACCCTTG-ATTTGC-AAAATTACAGAAA
* *
91385282 TACCATTGGTTTGCAAAATTACCA-AAA
1 TACCCTTGATTTGCAAAATTA-CAGAAA
* *
91385309 CACCCTTGGTTTG
1 TACCCTTGATTTG
91385322 TAGATTTACC
Statistics
Matches: 143, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
26 42 0.29
27 76 0.53
28 25 0.17
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTGCAAAATTACAGAAA
Found at i:91385317 original size:27 final size:27
Alignment explanation
Indices: 91385269--91385343 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
91385259 TTGAATTTCA
* *
91385269 AAAATTA-CAGAAATACCATTGGTTTGC
1 AAAATTACCA-AAACACCCTTGGTTTGC
*
91385296 AAAATTACCAAAACACCCTTGGTTTGT
1 AAAATTACCAAAACACCCTTGGTTTGC
* * *
91385323 AGATTTACCAATACACCCTTG
1 AAAATTACCAAAACACCCTTG
91385344 TAGGGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 39 0.95
28 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAACACCCTTGGTTTGC
Found at i:91385631 original size:41 final size:41
Alignment explanation
Indices: 91385581--91385660 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
91385571 GAAGGAAGAA
*
91385581 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
91385622 ATTGTGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
91385661 TGGTGGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:91385856 original size:22 final size:22
Alignment explanation
Indices: 91385804--91385859 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
91385794 GCCAATTATT
91385804 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTTTGCACCAAC
* **
91385826 CT-ACATATGGCTTTGTTCCAAC
1 CTGA-TTATGGCTTTGCACCAAC
91385848 CTGATTATGGCT
1 CTGATTATGGCT
91385860 GTATGCCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTTTGCACCAAC
Found at i:91388723 original size:140 final size:140
Alignment explanation
Indices: 91388471--91388731 Score: 432
Period size: 140 Copynumber: 1.9 Consensus size: 140
91388461 ATGGGAATTG
* *
91388471 GTGCCAATTATATTATCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTTGCTGCAA
1 GTGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTCGCTGCAA
* *
91388536 TGAAAGTAGTATCTCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTAC
66 TGAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTAC
91388601 CGAAGGCTGT
131 CGAAGGCTGT
* *
91388611 GTGCCAATTATATTACCGTTGCTGATGGCTATTAAGCCCAATATTTGATTAGCATCTCGCTGCAA
1 GTGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTCGCTGCAA
* * * *
91388676 TGAAGGTAGTACCGCAACTGGGCTACCATTGATGTGTATTGGATGGGTGGGTCGAT
66 TGAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGAT
91388732 ATTTATATCC
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
140 111 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (140 bp):
GTGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTCGCTGCAA
TGAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTAC
CGAAGGCTGT
Found at i:91391956 original size:42 final size:41
Alignment explanation
Indices: 91391844--91391956 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 41
91391834 TACCATACCA
* * *
91391844 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCA-ATATGGTCTTACACGAGATCTAATATCG
* * * *
91391886 ATGGCAATAGCCCAACTATGTTCTTACACGA-AGTCTAATGTCG
1 AT-GCCATATCCCAA-TATGGTCTTACACGAGA-TCTAATATCG
91391929 ATGCCATATCCCATATATGGTCTTACAC
1 ATGCCATATCCCA-ATATGGTCTTACAC
91391957 ATAATCTCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAATATGGTCTTACACGAGATCTAATATCG
Found at i:91404335 original size:71 final size:71
Alignment explanation
Indices: 91404251--91404414 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91404241 CGATTTGTCT
91404251 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91404316 CTTTCA
66 CTTTCA
91404322 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91404387 CTTTCA
66 CTTTCA
91404393 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91404415 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91404452 original size:71 final size:70
Alignment explanation
Indices: 91404251--91404448 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
91404241 CGATTTGTCT
* * * *
91404251 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91404316 CTTTCA
65 CTTTCA
* * * *
91404322 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91404387 CTTTCA
65 CTTTCA
* *
91404393 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
91404449 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91410944 original size:71 final size:71
Alignment explanation
Indices: 91410860--91411023 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91410850 CGATTTGTCT
91410860 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91410925 CTTTCA
66 CTTTCA
91410931 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91410996 CTTTCA
66 CTTTCA
91411002 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91411024 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91411061 original size:71 final size:70
Alignment explanation
Indices: 91410860--91411057 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
91410850 CGATTTGTCT
* * * *
91410860 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91410925 CTTTCA
65 CTTTCA
* * * *
91410931 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91410996 CTTTCA
65 CTTTCA
* *
91411002 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
91411058 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91418690 original size:47 final size:47
Alignment explanation
Indices: 91418627--91419058 Score: 674
Period size: 47 Copynumber: 9.3 Consensus size: 47
91418617 CCCTTCGGGA
* *
91418627 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
91418674 CATATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91418721 CTTATCTCATATATA-ACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
91418767 CTTGTCACATATATACACTTTCACATTCACCACATTGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91418813 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91418860 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91418907 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91418953 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91419000 TTTATCACATATATACACTTTCACATTCATCACATTGG-CATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91419046 CTTATCACATATA
1 CTTATCACATATA
91419059 CATATCTTGT
Statistics
Matches: 352, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
46 144 0.41
47 208 0.59
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:91418833 original size:93 final size:94
Alignment explanation
Indices: 91418628--91419058 Score: 692
Period size: 93 Copynumber: 4.6 Consensus size: 94
91418618 CCTTCGGGAC
* * * *
91418628 TTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCATATCACATATATACACC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
*
91418693 TTCACATCCATCACATCGGCCATTAGG-T
66 TTCACATTCATCACATCGGCCATTAGGCT
* *
91418721 CTTATCTCATATATA-ACTTTCACATTCATCACATTGGCCATTCGGCCTTGTCACATATATACAC
1 -TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
91418785 TTTCACATTCACCACATTGG-CATTAGGCT
65 TTTCACATTCATCACATCGGCCATTAGGCT
*
91418814 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
* * *
91418879 TTCACATTCATCACATTGGCCATTCGGCC
66 TTCACATTCATCACATCGGCCATTAGGCT
*
91418908 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGG-CTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
91418972 TTCACATTCATCACATCGGCCATTAGGCT
66 TTCACATTCATCACATCGGCCATTAGGCT
91419001 TTATCACATATATACACTTTCACATTCATCACATTGG-CATTCGGCCTTATCACATATA
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
91419059 CATATCTTGT
Statistics
Matches: 312, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
92 26 0.08
93 224 0.72
94 62 0.20
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCT
Found at i:91418898 original size:140 final size:140
Alignment explanation
Indices: 91418627--91419058 Score: 717
Period size: 140 Copynumber: 3.1 Consensus size: 140
91418617 CCCTTCGGGA
* * * *
91418627 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCATATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGG-CTTATCACATATATACAC
* * * *
91418692 CTTCACATCCATCACATCGGCCATTAGGTCTTATCTCATATATA-ACTTTCACATTCATCACATT
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
91418756 GGCCATTCGGC
130 GGCCATTCGGC
* *
91418767 CTTGTCACATATATACACTTTCACATTCACCACATTGG-CATTAGGCTTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC-TTATCACATATATACAC
*
91418831 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATT
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
91418896 GGCCATTCGGC
130 GGCCATTCGGC
91418907 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTATCACATATATACACT
*
91418972 TTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATACACTTTCACATTCATCACATTG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
91419037 G-CATTCGGC
131 GCCATTCGGC
91419046 CTTATCACATATA
1 CTTATCACATATA
91419059 CATATCTTGT
Statistics
Matches: 274, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
138 1 0.00
139 82 0.30
140 183 0.67
141 8 0.03
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
GCCATTCGGC
Found at i:91421971 original size:28 final size:28
Alignment explanation
Indices: 91421931--91422028 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 28
91421921 AAACGAAATC
91421931 CGCACACACAGTGCCCACTGACCGATCT
1 CGCACACACAGTGCCCACTGACCGATCT
* * ** * **
91421959 CGCACACATAGTGCTCGGTTAAAGAAT-T
1 CGCACACACAGTGCCCACTGACCG-ATCT
* *
91421987 CGCACATACAGTGTCCACTGACCGATCT
1 CGCACACACAGTGCCCACTGACCGATCT
*
91422015 CGCACACATAGTGC
1 CGCACACACAGTGC
91422029 TCGGTTAAAG
Statistics
Matches: 49, Mismatches: 19, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
27 2 0.04
28 45 0.92
29 2 0.04
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (28 bp):
CGCACACACAGTGCCCACTGACCGATCT
Found at i:91421992 original size:56 final size:56
Alignment explanation
Indices: 91421927--91422057 Score: 235
Period size: 56 Copynumber: 2.3 Consensus size: 56
91421917 CATGAAACGA
91421927 AATCCGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAG
1 AATCCGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAG
* * *
91421983 AATTCGCACATACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAG
1 AATCCGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAG
91422039 AATCCGCACACACAGTGCC
1 AATCCGCACACACAGTGCC
91422058 TCAATTCATT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (56 bp):
AATCCGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAG
Found at i:91422046 original size:28 final size:28
Alignment explanation
Indices: 91421959--91422056 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 28
91421949 TGACCGATCT
* *
91421959 CGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCTCGGTTAAAGAATC
* ** * **
91421987 CGCACATACAGTG-TCCACTGACCG-ATC
1 CGCACACACAGTGCT-CGGTTAAAGAATC
*
91422014 TCGCACACATAGTGCTCGGTTAAAGAATC
1 -CGCACACACAGTGCTCGGTTAAAGAATC
91422043 CGCACACACAGTGC
1 CGCACACACAGTGC
91422057 CTCAATTCAT
Statistics
Matches: 50, Mismatches: 16, Indels: 8
0.68 0.22 0.11
Matches are distributed among these distances:
27 3 0.06
28 43 0.86
29 4 0.08
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (28 bp):
CGCACACACAGTGCTCGGTTAAAGAATC
Found at i:91422080 original size:25 final size:25
Alignment explanation
Indices: 91422043--91422094 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
91422033 TTAAAGAATC
91422043 CGCACACACAGTGCCTCA-ATTCATT
1 CGCACACACAGTGCCT-ATATTCATT
* *
91422068 CGCACACATAGTGTCTATATTCATT
1 CGCACACACAGTGCCTATATTCATT
91422093 CG
1 CG
91422095 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
CGCACACACAGTGCCTATATTCATT
Found at i:91422326 original size:39 final size:40
Alignment explanation
Indices: 91422263--91422443 Score: 314
Period size: 39 Copynumber: 4.6 Consensus size: 40
91422253 CACATCATCG
* *
91422263 GCACGAATG-TCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCT-CTTCGGGACTTAGCCCGGATGTAACACTA
91422303 GCACGAATGCT-TTCGGGACTTAGCCCGGATGTAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
91422342 GCACGAATGCTCTTC-GGACTTAGCCCGGATGTAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
91422381 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
91422421 GCACGAATGCTCTTCGGGACTTA
1 GCACGAATGCTCTTCGGGACTTA
91422444 ACCCAGATCA
Statistics
Matches: 136, Mismatches: 2, Indels: 6
0.94 0.01 0.04
Matches are distributed among these distances:
39 76 0.56
40 59 0.43
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
Found at i:91422411 original size:79 final size:79
Alignment explanation
Indices: 91422263--91422443 Score: 312
Period size: 79 Copynumber: 2.3 Consensus size: 79
91422253 CACATCATCG
91422263 GCACGAATG-TCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTTTCGGGACTTAGC
1 GCACGAATGCT-CTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTTTCGGGACTTAGC
91422327 CCGGATGTAACACTA
65 CCGGATGTAACACTA
*
91422342 GCACGAATGCTCTTC-GGACTTAGCCCGGATGTAACACTAGCACGAATGCTCTTCGGGACTTAGC
1 GCACGAATGCTCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCT-TTCGGGACTTAGC
91422406 CCGGATGTAACACTA
65 CCGGATGTAACACTA
*
91422421 GCACGAATGCTCTTCGGGACTTA
1 GCACGAATGCTCTTCAGGACTTA
91422444 ACCCAGATCA
Statistics
Matches: 98, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
78 34 0.35
79 56 0.57
80 8 0.08
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (79 bp):
GCACGAATGCTCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTTTCGGGACTTAGCC
CGGATGTAACACTA
Found at i:91422556 original size:38 final size:38
Alignment explanation
Indices: 91422510--91422621 Score: 116
Period size: 38 Copynumber: 2.9 Consensus size: 38
91422500 AATTTTAATT
*
91422510 CGGACATAATCTCTGCACATAGCCATCGGATCTTTACC
1 CGGACATAATCTCTACACATAGCCATCGGATCTTTACC
* * * * * *
91422548 TGGGCATAATCTCCACATATAGTCATCGGGTCTTTACC
1 CGGACATAATCTCTACACATAGCCATCGGATCTTTACC
* ** * *
91422586 CGGACACAATCTCTACTTATAGTCATCGGGTCTTTA
1 CGGACATAATCTCTACACATAGCCATCGGATCTTTA
91422622 AGCCCGGATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (38 bp):
CGGACATAATCTCTACACATAGCCATCGGATCTTTACC
Found at i:91424628 original size:47 final size:47
Alignment explanation
Indices: 91424565--91425820 Score: 1532
Period size: 47 Copynumber: 26.3 Consensus size: 47
91424555 CCCTTCGGGA
* *
91424565 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
91424612 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91424659 CTTATC-TATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91424705 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91424751 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
91424798 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91424845 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91424892 CTTATCACATATATACAC-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91424938 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91424985 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
91425032 TTTATCACATATAAACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
91425079 CTTATCTCATATATACACTTTCACATTCATCACATCGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
91425126 CTAATCACATATATAAACTTTCACATTCATCACTTTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
91425173 CTTATCACATATATACACTTTCACATTCATCATATTGCCACACTTTC-AC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGC-CA--TTCGGC
* ** * **
91425222 ATTCATCACATCGGCAT-TAGGCTTTATCACATAT-AT-ACACTT-TCACATTCATC
1 CTT-ATCACAT----ATATACAC-TT-TCACAT-TCATCACA-TTGGC-CATTCGGC
* **
91425275 AC--ATCAGCCATTAGGATTTATCACATATAT-ACACTT--TCACATTCATCACA-TCGGC
1 -CTTATCA--CA-T---ATATA-CAC-T-T-TCACA-TTCATCACATT-GGC-CATTCGGC
*
91425330 CATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 C-TTA--TC--A---CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91425385 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91425432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91425479 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* ** * *
91425526 TTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91425573 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91425620 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91425667 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
91425714 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91425761 TTTATCACATATATACACTTTCACATTCATCACATTGGGCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91425808 CTTATCACATATA
1 CTTATCACATATA
91425821 CATATCTTGT
Statistics
Matches: 1072, Mismatches: 98, Indels: 78
0.86 0.08 0.06
Matches are distributed among these distances:
46 129 0.12
47 820 0.76
48 2 0.00
49 3 0.00
50 11 0.01
51 4 0.00
52 5 0.00
53 9 0.01
54 25 0.02
55 32 0.03
56 18 0.02
57 4 0.00
58 4 0.00
59 2 0.00
61 2 0.00
62 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:91424901 original size:22 final size:22
Alignment explanation
Indices: 91424873--91424947 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
91424863 TTTCACATTC
91424873 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
91424895 ATCACATATATACACTTC-ACATT
1 ATCACAT-TGGCCA-TTCGGCCTT
91424918 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
91424941 ATCACAT
1 ATCACAT
91424948 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 17 0.44
23 12 0.31
24 10 0.26
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:91425127 original size:141 final size:141
Alignment explanation
Indices: 91424565--91425820 Score: 1798
Period size: 141 Copynumber: 9.1 Consensus size: 141
91424555 CCCTTCGGGA
* * *
91424565 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * *
91424630 CTTCACATCCATCACATCGGCCATTAGGTCTTATC-TATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
91424694 GGCCATTCGGC
131 GGCCATTCGGC
* *
91424705 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGCCTTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
91424769 TTTCACATTCATCACATTGGCCATTAGG-CTTTATCACATATATACACTTTCACATTCATCACAT
66 TTTCACATTCATCACATCGGCCATTAGGTC-TTATCACATATATACACTTTCACATTCATCACAT
* * *
91424833 CGGCCATTAGGT
130 TGGCCATTCGGC
* *
91424845 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * * *
91424910 -TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
*
91424974 GGCCATTAGGC
131 GGCCATTCGGC
* * *
91424985 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTTATCACATATAAACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
91425050 TTTCACATTCATCACATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
*
91425115 GGTCATTCGGC
131 GGCCATTCGGC
* * *
91425126 CTAATCACATATATAAACTTTCACATTCATCACTTTGGCCATTCA-GCCTTATCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGCCTTATCACATATATACA
* * * **
91425190 CTTTCACATTCATCATAT-TGCCA-CA---CTT-TCAC--AT-T-CA---TCACA-TC--GGCAT
65 CTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACAT
91425239 TAGG-C--T----
130 T-GGCCATTCGGC
** **
91425245 -TTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGATTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
91425309 TTTCACATTCATCACATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
*
91425374 GGCCATTCAGC
131 GGCCATTCGGC
*
91425385 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
91425450 TTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
*
91425515 GGCCATTAGGC
131 GGCCATTCGGC
* ** * *
91425526 TTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGTCTTATCTCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
91425591 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
91425656 GGCCATTCGGC
131 GGCCATTCGGC
*
91425667 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
91425732 TTTCACATTCATCACATCGGCCATTAGG-CTTTATCACATATATACACTTTCACATTCATCACAT
66 TTTCACATTCATCACATCGGCCATTAGGTC-TTATCACATATATACACTTTCACATTCATCACAT
*
91425796 TGGGCATTCGGC
130 TGGCCATTCGGC
91425808 CTTATCACATATA
1 CTTATCACATATA
91425821 CATATCTTGT
Statistics
Matches: 1001, Mismatches: 82, Indels: 65
0.87 0.07 0.06
Matches are distributed among these distances:
117 1 0.00
118 71 0.07
119 4 0.00
120 1 0.00
123 4 0.00
124 3 0.00
125 4 0.00
126 4 0.00
127 3 0.00
128 7 0.01
131 7 0.01
132 3 0.00
133 4 0.00
134 5 0.00
135 3 0.00
136 4 0.00
138 1 0.00
139 52 0.05
140 249 0.25
141 570 0.57
142 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTCGGC
Found at i:91425204 original size:25 final size:25
Alignment explanation
Indices: 91425129--91425278 Score: 77
Period size: 25 Copynumber: 6.3 Consensus size: 25
91425119 ATTCGGCCTA
*
91425129 ATCACATATATAAACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * *
91425154 ATCAC-T-T-TGGC-CATTCAGCCTT-
1 ATCACATATAT-ACACTTTCA-CATTC
91425176 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* **
91425201 ATCATAT-TGCCACACTTTCACATTC
1 ATCACATAT-ATACACTTTCACATTC
*** *** *
91425226 ATCAC--ATCGGCA-TTAGGC-TTT
1 ATCACATATATACACTTTCACATTC
91425247 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
91425272 ATCACAT
1 ATCACAT
91425279 CAGCCATTAG
Statistics
Matches: 88, Mismatches: 24, Indels: 26
0.64 0.17 0.19
Matches are distributed among these distances:
21 7 0.08
22 14 0.16
23 12 0.14
24 11 0.12
25 44 0.50
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:91425261 original size:71 final size:72
Alignment explanation
Indices: 91425142--91425275 Score: 218
Period size: 71 Copynumber: 1.9 Consensus size: 72
91425132 ACATATATAA
* *
91425142 ACTTTCACATTCATCACTTTGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCATA
1 ACTTTCACATTCATCACATCGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCATA
91425207 TTGCCAC
66 TTGCCAC
*
91425214 ACTTTCACATTCATCACATCGG-CATT-AGGCTTTATCACATATATACACTTTCACATTCATCA
1 ACTTTCACATTCATCACATCGGCCATTCA-GCCTTATCACATATATACACTTTCACATTCATCA
91425276 CATCAGCCAT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
70 1 0.02
71 37 0.64
72 20 0.34
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.36
Consensus pattern (72 bp):
ACTTTCACATTCATCACATCGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCATA
TTGCCAC
Found at i:91425276 original size:118 final size:119
Alignment explanation
Indices: 91425093--91425322 Score: 356
Period size: 118 Copynumber: 1.9 Consensus size: 119
91425083 TCTCATATAT
*
91425093 ACACTTTCACATTCATCACATCGGTCATTCGGCCTAATCACATATATAAACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGTCATTAGGCCTAATCACATATATAAACTTTCACATTCATCA
* ** *
91425158 CTTTGGCCATTCA-GCCTTATCACATATATACACTTTCACATTCATCATATTGCC
66 CATCAGCCATT-AGGACTTATCACATATATACACTTTCACATTCATCATATTGCC
* * *
91425212 ACACTTTCACATTCATCACATCGG-CATTAGGCTTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGTCATTAGGCCTAATCACATATATAAACTTTCACATTCATCA
*
91425276 CATCAGCCATTAGGATTTATCACATATATACACTTTCACATTCATCA
66 CATCAGCCATTAGGACTTATCACATATATACACTTTCACATTCATCA
91425323 CATCGGCCAT
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
117 1 0.01
118 76 0.75
119 24 0.24
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (119 bp):
ACACTTTCACATTCATCACATCGGTCATTAGGCCTAATCACATATATAAACTTTCACATTCATCA
CATCAGCCATTAGGACTTATCACATATATACACTTTCACATTCATCATATTGCC
Found at i:91429324 original size:19 final size:20
Alignment explanation
Indices: 91429300--91429337 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91429290 GGTATCACCA
91429300 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91429319 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91429338 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91429679 original size:92 final size:93
Alignment explanation
Indices: 91429566--91429735 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
91429556 GCCCATAAGT
* *
91429566 GAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91429631 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
91429659 GAACTCGG-CTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91429723 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91429736 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 65 0.89
93 8 0.11
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:91429732 original size:46 final size:46
Alignment explanation
Indices: 91429558--91429732 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
91429548 TGTAACCCGC
* * *
91429558 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91429604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
91429654 --TTCA-CGAACTCGG-CTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91429696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91429733 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 8 0.08
46 73 0.69
47 8 0.08
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91430192 original size:30 final size:30
Alignment explanation
Indices: 91430158--91430217 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91430148 ATTTAATACG
91430158 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
91430188 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91430218 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91433619 original size:20 final size:20
Alignment explanation
Indices: 91433580--91433620 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
91433570 GCATGTGTTT
91433580 TGAATTTTATTGATAGAATA
1 TGAATTTTATTGATAGAATA
*
91433600 TGAATGTTTTTTGATA-AATA
1 TGAAT-TTTATTGATAGAATA
91433620 T
1 T
91433621 ACAAGTTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
TGAATTTTATTGATAGAATA
Found at i:91433847 original size:8 final size:8
Alignment explanation
Indices: 91433834--91433858 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91433824 AACAATAGGG
91433834 GTAAATAT
1 GTAAATAT
91433842 GTAAATAT
1 GTAAATAT
91433850 GTAAATAT
1 GTAAATAT
91433858 G
1 G
91433859 CTTAAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (8 bp):
GTAAATAT
Found at i:91438865 original size:20 final size:21
Alignment explanation
Indices: 91438826--91438865 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
91438816 AAGGGCTATT
*
91438826 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
91438847 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
91438866 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:91439731 original size:49 final size:48
Alignment explanation
Indices: 91439526--91439842 Score: 235
Period size: 49 Copynumber: 6.7 Consensus size: 48
91439516 TGAAATGTGT
* * ** *
91439526 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACAT-TATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAGA
* * * * * * *
91439572 GCCAGTGTAAGACATGTCTAGGACAT-GCATCAACCTCA-AGATATACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGAT-GA-GA
* * *
91439620 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCT--TGACATGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGAT-AGATGAGA
* * *
91439665 TC-AGTGTAAGACTTGTCTAGGACATGGCATCGACACTGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAGA
* * * *
91439713 GCTAGTGTAAGACCTGTCTGGGACATGACATCGGCCTCGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAGA
* *
91439762 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT--ATGTGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAGA
* * *
91439809 GCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCG
91439843 GCATCGTACC
Statistics
Matches: 217, Mismatches: 38, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
44 27 0.12
45 2 0.01
46 37 0.17
47 22 0.10
48 52 0.24
49 77 0.35
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAGA
Found at i:91439788 original size:98 final size:96
Alignment explanation
Indices: 91439526--91439844 Score: 318
Period size: 93 Copynumber: 3.4 Consensus size: 96
91439516 TGAAATGTGT
* * *
91439526 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCCAGTGTAAGACATG
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGA-AGTCAGTGTAAGACATG
* * * *
91439588 TCTAGGACAT-GCATCAACCTCA-AGATATACAA
65 TCTAGGACATGGCATCGACCTGATAGAT-GA-GA
* * * * *
91439620 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTG--ACATG-TGTCAGTGTAAGACTTGT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAGTCAGTGTAAGACATGT
91439681 CTAGGACATGGCATCGACACTGATAGATGAGA
66 CTAGGACATGGCATCGAC-CTGATAGATGAGA
* *
91439713 GCTAGTGTAAGACCTGTCTGGGACATGACATCGGCCTCGATATATGAAAGTCAGTGTAAGACCTG
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATG-AAGTCAGTGTAAGACATG
* * *
91439778 TCTGGGACATGGCATCGACTTAGAT--ATGTGA
65 TCTAGGACATGGCATCGACCT-GATAGATGAGA
* * *
91439809 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
91439845 ATCGTACCCT
Statistics
Matches: 187, Mismatches: 25, Indels: 23
0.80 0.11 0.10
Matches are distributed among these distances:
92 24 0.13
93 40 0.21
94 36 0.19
95 10 0.05
96 22 0.12
97 19 0.10
98 36 0.19
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAGTCAGTGTAAGACATGT
CTAGGACATGGCATCGACCTGATAGATGAGA
Found at i:91444382 original size:14 final size:14
Alignment explanation
Indices: 91444363--91444401 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
91444353 ATATTTGACT
*
91444363 TGTTCTTAATTATG
1 TGTTCTTAATTATA
91444377 TGTTCTTAATTATA
1 TGTTCTTAATTATA
*
91444391 TGCTCTTAATT
1 TGTTCTTAATT
91444402 CTTGTTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56
Consensus pattern (14 bp):
TGTTCTTAATTATA
Found at i:91445134 original size:18 final size:19
Alignment explanation
Indices: 91445113--91445149 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
91445103 TTACAATTTA
*
91445113 AATTTTTTATTT-TTTTCT
1 AATTTTTCATTTATTTTCT
91445131 AATTTTTCATTTATTTTCT
1 AATTTTTCATTTATTTTCT
91445150 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (19 bp):
AATTTTTCATTTATTTTCT
Found at i:91452646 original size:14 final size:14
Alignment explanation
Indices: 91452623--91452661 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
91452613 ATATTTGACT
91452623 TGTTCTTAATTACG
1 TGTTCTTAATTACG
* *
91452637 TGTTCCTAATTATG
1 TGTTCTTAATTACG
91452651 TGTTCTTAATT
1 TGTTCTTAATT
91452662 CTTGTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.54
Consensus pattern (14 bp):
TGTTCTTAATTACG
Found at i:91455986 original size:46 final size:48
Alignment explanation
Indices: 91455919--91456036 Score: 136
Period size: 48 Copynumber: 2.5 Consensus size: 48
91455909 TATGTGTGCG
*
91455919 AGTGTAAGACATGTCTAGGACATGCATCGG-CT-ACA-TTATG-AGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCA-AGATATGCA-AGCT
* * *
91455965 AGTGTAAGACATGTCTTGGACATGTATTGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATATGCAAGCT
* *
91456013 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTAGGACATG
91456037 GCTTTGGCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 27 0.44
47 3 0.05
48 31 0.50
49 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATATGCAAGCT
Found at i:91456127 original size:93 final size:96
Alignment explanation
Indices: 91456009--91456186 Score: 245
Period size: 93 Copynumber: 1.9 Consensus size: 96
91455999 AAGATATGCA
* * * *
91456009 AGCTAGTGTAAGACCTGTCTGGGACATGGCTTTGG-CTTGACATGTG-TT-AGTGTAAGACCTGT
1 AGCTAGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCGACATATGATTCAGTGTAAGACCTGT
91456071 CTCGGACATGGCATCGACACTGATAGATGAG
66 CTCGGACATGGCATCGACACTGATAGATGAG
* * *
91456102 AGCTAGTGTACGACCTGTCTAGGACATGGCATTGGCCTCGATATATGAAATTCAGTGTAAGACTT
1 AGCTAGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCGACATATG--ATTCAGTGTAAGACCT
*
91456167 GTCTGGGACATGGCATCGAC
64 GTCTCGGACATGGCATCGAC
91456187 TTAGATATGT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 32 0.44
94 8 0.11
97 2 0.03
98 30 0.42
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (96 bp):
AGCTAGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCGACATATGATTCAGTGTAAGACCTGT
CTCGGACATGGCATCGACACTGATAGATGAG
Found at i:91456170 original size:142 final size:138
Alignment explanation
Indices: 91455919--91456180 Score: 339
Period size: 142 Copynumber: 1.9 Consensus size: 138
91455909 TATGTGTGCG
* * *
91455919 AGTGTAAGACATGTCTAGGACATGCATCGGCTACATTATGAGAGCTAGTGTAAGACATGTCTTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGACTACATGATGAGAGCTAGTGTAAGACATGTCTAGG
* *
91455984 ACATGTATTGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACATGGCTTTGGCTTGA
66 ACATGCATTGGCCTCAAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATGGCTTTGGCTTGA
91456049 CATGTGTT
131 CATGTGTT
* * * *
91456057 AGTGTAAGACCTGTCTCGGACATGGCATCGAC-ACTGATAGATGAGAGCTAGTGTACGACCTGTC
1 AGTGTAAGACATGTCTAGGACAT-GCATCGACTAC--AT-GATGAGAGCTAGTGTAAGACATGTC
* * * *
91456121 TAGGACATGGCATTGGCCTCGATATATGAAA-TTCAGTGTAAGACTTGTCTGGGACATGGC
62 TAGGACAT-GCATTGGCCTCAAGATATGAAAGCT-AGTGTAAGACCTGTCTGGGACATGGC
91456181 ATCGACTTAG
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
138 23 0.22
139 7 0.07
140 2 0.02
141 30 0.29
142 43 0.41
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (138 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACTACATGATGAGAGCTAGTGTAAGACATGTCTAGG
ACATGCATTGGCCTCAAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATGGCTTTGGCTTGA
CATGTGTT
Found at i:91456194 original size:49 final size:48
Alignment explanation
Indices: 91455919--91456186 Score: 167
Period size: 49 Copynumber: 5.7 Consensus size: 48
91455909 TATGTGTGCG
* * * *
91455919 AGTGTAAGACATGTCTAGGACAT-GCATCG-GCT-ACATTATGAGAGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTGATA-TATGAAAGCT
* * * * * * * *
91455965 AGTGTAAGACATGTCTTGGACAT-GTATTGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCT-GATATATGAAAGCT
* * * * * * * *
91456013 AGTGTAAGACCTGTCTGGGACATGGCTTTGGCTTG--ACATG--TGTT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTGATATATGAAAGCT
* * *
91456057 AGTGTAAGACCTGTCTCGGACATGGCATCGACACTGATAGATGAGAGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTGATATATGAAAGCT
* * * *
91456106 AGTGTACGACCTGTCTAGGACATGGCATTGGCCTCGATATATGAAA-TT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCT-GATATATGAAAGCT
* *
91456154 CAGTGTAAGACTTGTCTGGGACATGGCATCGAC
1 -AGTGTAAGACCTGTCTAGGACATGGCATCGAC
91456187 TTAGATATGT
Statistics
Matches: 175, Mismatches: 36, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
44 30 0.17
45 2 0.01
46 30 0.17
47 6 0.03
48 32 0.18
49 75 0.43
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACCTGATATATGAAAGCT
Found at i:91460757 original size:43 final size:43
Alignment explanation
Indices: 91460602--91460758 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
91460592 TGTTTTTTCG
* * *
91460602 TGTAAGACCACGTCTGGGATGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTAAA
* * ***
91460646 TGTAAGACCACGTCTGGGACGTTTGCATC-ATATTCGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAAA
* **
91460688 TGTAAGACC-CTGTCTAGGACAATGGCATCGATATTTGATTAAA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTAAA
* *
91460731 TGTAAGAGCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
91460759 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 34 0.38
44 28 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAAA
Found at i:91462015 original size:30 final size:29
Alignment explanation
Indices: 91461962--91462018 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
91461952 ACGGCCTAGA
91461962 CACACGGCCGTGTCTAAAGGCGTGTGAGG
1 CACACGGCCGTGTCTAAAGGCGTGTGAGG
*
91461991 CACACGGCC-TGTTTACACAGGCGTGTGA
1 CACACGGCCGTGTCTA-A-AGGCGTGTGA
91462019 CATGTGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 5 0.20
29 10 0.40
30 10 0.40
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.19
Consensus pattern (29 bp):
CACACGGCCGTGTCTAAAGGCGTGTGAGG
Found at i:91469491 original size:56 final size:56
Alignment explanation
Indices: 91469405--91469517 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
91469395 CATATAAAAT
*
91469405 AAAAGTCAATAATAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
1 AAAAGTCAATAACAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
* *
91469461 AAAAGTCAATAGCCAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
1 AAAAGTCAATAACAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
91469517 A
1 A
91469518 TGCTCATTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.22
Consensus pattern (56 bp):
AAAAGTCAATAACAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
Found at i:91471188 original size:43 final size:42
Alignment explanation
Indices: 91471092--91471195 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
91471082 CACTTATGAT
* * * *
91471092 TTACATGTAAGACCACGTTTGGGACATTGGCATCGTATTTTA
1 TTACATGTAAGACCACGTCTGGGACAATGGCATCATATTTGA
***
91471134 TTTTTTGTAAGACC-CTGTCTGGGACAATGGCATCAATATTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAATGGCATC-ATATTTGA
*
91471177 TTACATGTAAGACTACGTC
1 TTACATGTAAGACCACGTC
91471196 CTGGATGTTG
Statistics
Matches: 48, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.02
42 27 0.56
43 19 0.40
44 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAATGGCATCATATTTGA
Found at i:91474124 original size:88 final size:87
Alignment explanation
Indices: 91473967--91474155 Score: 274
Period size: 88 Copynumber: 2.2 Consensus size: 87
91473957 GACAAGATTG
* * * * *
91473967 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACAGCACTAA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATACAGCACTAA
91474032 GTGTGCGAGCTGAAAATATATA
66 GTGTGCGAGCTGAAAATATATA
* *
91474054 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAG-CTGAAAATTATATAGCAC
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTG---ATTATACAGCAC
91474117 TAAGTGTGCGAGCTGAAAATATATA
63 TAAGTGTGCGAGCTGAAAATATATA
91474142 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91474156 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
85 2 0.02
86 20 0.22
87 20 0.22
88 50 0.54
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (87 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATACAGCACTAA
GTGTGCGAGCTGAAAATATATA
Found at i:91474167 original size:29 final size:29
Alignment explanation
Indices: 91473967--91474155 Score: 265
Period size: 29 Copynumber: 6.5 Consensus size: 29
91473957 GACAAGATTG
* * * * *
91473967 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
91473997 GCACTAAGTGTGCGAGTTTG--ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
91474025 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
91474054 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
91474083 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
91474113 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
91474142 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91474156 GATTCACTAT
Statistics
Matches: 148, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
27 2 0.01
28 21 0.14
29 79 0.53
30 44 0.30
31 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:91481811 original size:29 final size:29
Alignment explanation
Indices: 91481779--91481967 Score: 265
Period size: 29 Copynumber: 6.5 Consensus size: 29
91481769 ATAGTGAATC
91481779 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
91481808 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
91481838 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
91481867 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * *
91481896 CGCACACTTAGTGCTGTATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
91481924 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
91481954 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91481968 CAATCTTGTC
Statistics
Matches: 148, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
27 2 0.01
28 21 0.14
29 78 0.53
30 46 0.31
31 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:91487563 original size:44 final size:43
Alignment explanation
Indices: 91487497--91487653 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
91487487 ATGTGTTATT
* * *
91487497 GTGTAAGATCATGTTTGGGACATTGGCATCGATTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATTT-TGATTTAC
* * *
91487541 GTGTAAGACCATGTTTGAGACATTGGCATCTA-TTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATTTTGATTTAC
* * *
91487582 GTGTAAGACCCTGTCTGGAACAGTGGCATCAATATTTGA-TTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAAT-TTTGATTTAC
* *
91487625 ATGTAAGACCACGTCTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
91487654 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 27 0.28
42 8 0.08
43 32 0.33
44 29 0.30
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCAATTTTGATTTAC
Found at i:91487652 original size:84 final size:85
Alignment explanation
Indices: 91487497--91487653 Score: 201
Period size: 85 Copynumber: 1.9 Consensus size: 85
91487487 ATGTGTTATT
* * * * * * * *
91487497 GTGTAAGATCATGTTTGGGACATTGGCATCGATTTATGATTTACGTGTAAGACCATGTTTGAGAC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCAATTTATGATTTACATGTAAGACCACGTCTGAGAC
91487562 ATTGGCATCTATTTGATTTC
66 ATTGGCATCTATTTGATTTC
* *
91487582 GTGTAAGACCCTGTCTGGAACAGTGGCATCAATATT-TGA-TTACATGTAAGACCACGTCTGGGA
1 GTGTAAGACCATGTCTGGAACAGTGGCATCAAT-TTATGATTTACATGTAAGACCACGTCTGAGA
91487645 CATTGGCAT
65 CATTGGCAT
91487654 TGTACGAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 29 0.48
85 30 0.49
86 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (85 bp):
GTGTAAGACCATGTCTGGAACAGTGGCATCAATTTATGATTTACATGTAAGACCACGTCTGAGAC
ATTGGCATCTATTTGATTTC
Found at i:91493875 original size:43 final size:43
Alignment explanation
Indices: 91493726--91493875 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
91493716 TATGTGTTAT
* * *
91493726 CATGTAAGACCACATCTAGGAC-GTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACAG-TGGCATCGA-TATTTGA-TTA
* * * * * *
91493770 CGTGTAAGACCATGTCTTGGAAATTGGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
91493812 CATGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTA
*
91493855 CATGTAAGACCACGTTTGGGA
1 CATGTAAGACCACGTCTGGGA
91493876 TGTTTCCATT
Statistics
Matches: 86, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 29 0.34
43 31 0.36
44 26 0.30
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
Found at i:91496305 original size:20 final size:20
Alignment explanation
Indices: 91496282--91496319 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91496272 ATTTATTCGC
* *
91496282 GATTTTCAATATTTTGTAAA
1 GATTTTAAAAATTTTGTAAA
91496302 GATTTTAAAAATTTTGTA
1 GATTTTAAAAATTTTGTA
91496320 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.50
Consensus pattern (20 bp):
GATTTTAAAAATTTTGTAAA
Found at i:91500905 original size:47 final size:47
Alignment explanation
Indices: 91500852--91501267 Score: 706
Period size: 47 Copynumber: 8.9 Consensus size: 47
91500842 ACAAGATATG
*
91500852 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
91500899 TTTATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91500946 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91500993 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91501040 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
91501087 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91501134 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
91501181 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91501228 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
91501268 TAAGGTCGAA
Statistics
Matches: 347, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 347 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:91501024 original size:22 final size:22
Alignment explanation
Indices: 91500996--91501071 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
91500986 AAGTGTATAT
91500996 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
91501018 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
91501042 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
91501065 ATGTGAT
1 ATGTGAT
91501072 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:91501106 original size:141 final size:141
Alignment explanation
Indices: 91500852--91501600 Score: 802
Period size: 141 Copynumber: 5.4 Consensus size: 141
91500842 ACAAGATATG
* * *
91500852 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATTTATGTGATAAAGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
91500917 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA-AGCCTAATGGCCAATGTGATGAA
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGA-CCTAATGGCCAATGTGATGAA
91500981 TGTGAAAGTGTA
130 TGTGAAAGTGTA
91500993 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
91501058 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAAT
91501123 GTGAAAGTGTA
131 GTGAAAGTGTA
* * * *
91501134 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * * *
91501199 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAAT
*
91501264 GTGATAAG-GTC
131 GTGA-AAGTGTA
* ** * * * * ***
91501275 GA-ATG-GCCAATG-TG-AT-G--AATGTGA--AA-GTGTATATA-TG-AGATAAGACCTAATGG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-A-A-AGTGTATATATGTGATAA-GG
** * * *
91501328 CCG-ATGTGATGAATGTGA--AA-GTGTATATA-TGTGATA-A--AGCCTAATGGCC-AAT-GT-
62 CCGAATG-G-CCAATGTGATGAATGTG-A-A-AGTGT-ATATATGAG-ATAA-GACCTAATGGCC
91501382 -----GATGAATGTGAAAGTGTA
119 AATGTGATGAATGTGAAAGTGTA
* * *
91501400 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
** * *
91501465 ATGGCCAATGTGATGAATGTGAAAAAGTATATATGAGATAAGACCTAATGGCCGATGTGATGGAT
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAAT
*
91501530 GTGAAGGTGTA
131 GTGAAAGTGTA
* *
91501541 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
91501601 TCCCGAAGGG
Statistics
Matches: 505, Mismatches: 60, Indels: 86
0.78 0.09 0.13
Matches are distributed among these distances:
124 3 0.01
125 14 0.03
126 3 0.01
127 5 0.01
129 2 0.00
130 1 0.00
131 8 0.02
132 40 0.08
133 33 0.07
134 41 0.08
135 9 0.02
136 1 0.00
137 2 0.00
139 4 0.01
140 3 0.01
141 332 0.66
142 4 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAAT
GTGAAAGTGTA
Found at i:91501140 original size:25 final size:25
Alignment explanation
Indices: 91501112--91501189 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
91501102 CTAATGGCCG
91501112 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
91501137 ATGTGAT-AAAGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
91501159 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
91501184 ATGTGA
1 ATGTGA
91501190 CAAGGCCTAA
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:91501266 original size:31 final size:31
Alignment explanation
Indices: 91501231--91501298 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
91501221 AAGTGTATAT
91501231 ATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
91501262 ATGTGATAAGGTCGAATGGCCAATGTGATGA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGA
91501293 ATGTGA
1 ATGTGA
91501299 AAGTGTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.25
Consensus pattern (31 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:91501288 original size:78 final size:78
Alignment explanation
Indices: 91501184--91501345 Score: 252
Period size: 78 Copynumber: 2.1 Consensus size: 78
91501174 AAGTGTATAT
* * * *
91501184 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
1 ATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCGAATG
91501249 GCCAATGTGATGA
66 GCCAATGTGATGA
* * *
91501262 ATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
1 ATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCGAATG
*
91501327 GCCGATGTGATGA
66 GCCAATGTGATGA
91501340 ATGTGA
1 ATGTGA
91501346 AAGTGTATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (78 bp):
ATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCGAATG
GCCAATGTGATGA
Found at i:91501295 original size:47 final size:47
Alignment explanation
Indices: 91501262--91501600 Score: 507
Period size: 47 Copynumber: 7.2 Consensus size: 47
91501252 AATGTGATGA
* *
91501262 ATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
91501309 ATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
91501356 ATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
91501403 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* **
91501450 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAAAGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * *
91501497 ATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
91501544 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
91501591 ATGTGATAAG
1 ATGTGATAAG
91501601 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 261 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:91501297 original size:219 final size:219
Alignment explanation
Indices: 91501043--91501486 Score: 879
Period size: 219 Copynumber: 2.0 Consensus size: 219
91501033 AAGTGTATAT
91501043 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
91501108 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTG
91501173 AAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
131 AAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
91501238 AAGGCCGAATGGCCAATGTGATGA
196 AAGGCCGAATGGCCAATGTGATGA
*
91501262 ATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
91501327 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTG
91501392 AAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
131 AAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
91501457 AAGGCCGAATGGCCAATGTGATGA
196 AAGGCCGAATGGCCAATGTGATGA
91501481 ATGTGA
1 ATGTGA
91501487 AAAAGTATAT
Statistics
Matches: 224, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 224 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (219 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTG
AAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATGGCCAATGTGATGA
Found at i:91501342 original size:94 final size:94
Alignment explanation
Indices: 91501262--91501600 Score: 561
Period size: 94 Copynumber: 3.6 Consensus size: 94
91501252 AATGTGATGA
*
91501262 ATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
91501327 GCCGATGTGATGAATGTGAAAGTGTATAT
66 GCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
91501356 ATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
91501421 GCCGATGTGATGAATGTGAAAGTGTATAT
66 GCCGATGTGATGAATGTGAAAGTGTATAT
**
91501450 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAAAGTATATATGAGATAAGACCTAATG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
* *
91501515 GCCGATGTGATGGATGTGAAGGTGTATAT
66 GCCGATGTGATGAATGTGAAAGTGTATAT
* * *
91501544 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAG
91501601 TCCCGAAGGG
Statistics
Matches: 225, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 225 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (94 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATG
GCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:91501359 original size:25 final size:25
Alignment explanation
Indices: 91501331--91501408 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
91501321 CTAATGGCCG
91501331 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
91501356 ATGTGAT-AAAGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
91501378 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
91501403 ATGTGA
1 ATGTGA
91501409 CAAGGCCTAA
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:91513659 original size:29 final size:28
Alignment explanation
Indices: 91513627--91513729 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
91513617 GTGACGAGAT
* *
91513627 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
91513656 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
91513685 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
91513714 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91513730 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:91515284 original size:53 final size:54
Alignment explanation
Indices: 91515211--91515428 Score: 218
Period size: 55 Copynumber: 4.1 Consensus size: 54
91515201 GGGTGTTACA
* *
91515211 ATGGCAATTGGTAAGGTTTC-TAAGGCAAGGGTATCATGTAAGACCATGTCAAGAC
1 ATGGC-ATTGGTAA-GTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGAC
* * * * *
91515266 ATGGCATTGATAAGTTTCTATAAGGCAAAGG-TCCCGTGTAAGACCATGCCAAGGC
1 ATGGCATTGGTAAGTTTC-ATAAGGC-AAGGATACCATGTAAGACCATGTCAAGAC
* * *
91515321 ATGGCATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGACAATGTCGAGAC
1 ATGGCATTGGTAAGTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGAC
* * * *
91515374 ATGGCAATGGTAAATTTC--AA---AAGGATACCATGTAAGACCATGACAAGTC
1 ATGGCATTGGTAAGTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGAC
91515423 ATGGCA
1 ATGGCA
91515429 ATGGAAAGGT
Statistics
Matches: 137, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
49 31 0.23
52 6 0.04
53 41 0.30
54 13 0.09
55 42 0.31
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
ATGGCATTGGTAAGTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGAC
Found at i:91515290 original size:55 final size:53
Alignment explanation
Indices: 91515231--91515428 Score: 181
Period size: 53 Copynumber: 3.8 Consensus size: 53
91515221 GTAAGGTTTC
*
91515231 TAAGGCAAGGGTATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTA
1 TAAGGCAAGGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAG-TTC-A
* * * * * * *
91515286 TAAGGCAAAGGTCCCGTGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGCAAGGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
* * * * * *
91515339 TAAGGCAAGGATACCATGTAAGACAATGTCGAGACATGGCAATGGTAAATT--
1 TAAGGCAAGGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
* * *
91515390 TCAA---AAGGATACCATGTAAGACCATGACAAGTCATGGCA
1 T-AAGGCAAGGGTACCATGTAAGACCATGTCAAGACATGGCA
91515429 ATGGAAAGGT
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
49 31 0.26
51 1 0.01
52 2 0.02
53 41 0.34
54 3 0.03
55 41 0.34
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
TAAGGCAAGGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
Found at i:91524046 original size:3 final size:3
Alignment explanation
Indices: 91524040--91524096 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
91524030 TTATTAGAAA
91524040 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91524088 TAT TAT TAT
1 TAT TAT TAT
91524097 GAAATAAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91524248 original size:16 final size:17
Alignment explanation
Indices: 91524202--91524251 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
91524192 TTTATTAAAG
91524202 TAAATAGATATTTATTA
1 TAAATAGATATTTATTA
* * * *
91524219 TTACT-TATAATTATT-
1 TAAATAGATATTTATTA
91524234 TAAATAGATATTTATTA
1 TAAATAGATATTTATTA
91524251 T
1 T
91524252 TATTATATAA
Statistics
Matches: 23, Mismatches: 8, Indels: 4
0.66 0.23 0.11
Matches are distributed among these distances:
15 3 0.13
16 16 0.70
17 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (17 bp):
TAAATAGATATTTATTA
Found at i:91525819 original size:39 final size:39
Alignment explanation
Indices: 91525763--91525909 Score: 134
Period size: 39 Copynumber: 3.8 Consensus size: 39
91525753 TTAATAGAGG
* *
91525763 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
1 TAAATTACTGCACTGAATAATTGATAGTTACTGAATAAC
*** * * * *
91525802 TAAATTA-TAGTTTTGAATAATTAATAGCTATTAAATAAC
1 TAAATTACT-GCACTGAATAATTGATAGTTACTGAATAAC
* * * *
91525841 TATACTACTGCACTGAATATTTGATAGTTACTGAATGAC
1 TAAATTACTGCACTGAATAATTGATAGTTACTGAATAAC
* * *
91525880 TAAATTACTGTACTGAATAACTGATTGTTA
1 TAAATTACTGCACTGAATAATTGATAGTTA
91525910 TTGATTGGTT
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
38 1 0.01
39 80 0.98
40 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (39 bp):
TAAATTACTGCACTGAATAATTGATAGTTACTGAATAAC
Found at i:91531883 original size:3 final size:3
Alignment explanation
Indices: 91531871--91531957 Score: 117
Period size: 3 Copynumber: 29.3 Consensus size: 3
91531861 TTAGCATATC
* *
91531871 TTA TTA -TA TTA TTG TTA TTA -AA TTGAA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA TTA TTA TTA
91531915 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91531958 GAATTAAATA
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
2 5 0.07
3 67 0.89
5 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:91536752 original size:21 final size:20
Alignment explanation
Indices: 91536726--91536782 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 20
91536716 AGATAGTTAC
91536726 TGAATAACTAAATTACTGTAT
1 TGAATAACTAAA-TACTGTAT
** *
91536747 TGAATAA-TTGATAGT-TAT
1 TGAATAACTAAATACTGTAT
91536765 TGAATAACTAAACTACTG
1 TGAATAACTAAA-TACTG
91536783 CACTGAATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
18 10 0.37
19 5 0.19
20 5 0.19
21 7 0.26
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (20 bp):
TGAATAACTAAATACTGTAT
Found at i:91536771 original size:39 final size:39
Alignment explanation
Indices: 91536717--91536829 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
91536707 GGCTGTTACA
*
91536717 GATAGTTACTGAATAACTAAATTACTGTATTGAATAATT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
* * * *
91536756 GATAGTTATTGAATAACTAAACTACTGCACTGAATATTT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
*
91536795 GATAGTTACTGAATGACTAAATTA--GTACTGAATAA
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAA
91536830 CTAATTGTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 9 0.14
39 55 0.86
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (39 bp):
GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
Found at i:91543285 original size:40 final size:40
Alignment explanation
Indices: 91543241--91543350 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
91543231 TTCACAATTT
* *
91543241 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
91543281 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * * *
91543321 GCATAAATGTCTTTGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
91543351 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:91544955 original size:29 final size:29
Alignment explanation
Indices: 91544927--91545028 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
91544917 CCTCCGAGCT
** * * *
91544927 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
91544956 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
91544985 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
91545014 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
91545029 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:91553572 original size:40 final size:40
Alignment explanation
Indices: 91553513--91553720 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
91553503 CAATTGAATG
* * *
91553513 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
91553553 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
91553593 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
91553633 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
91553673 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
91553713 ATATCCGG
1 ATATCCGG
91553721 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:91553651 original size:80 final size:80
Alignment explanation
Indices: 91553515--91553720 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
91553505 ATTGAATGAT
* * * * * *
91553515 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
91553580 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
91553595 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
91553660 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
91553675 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
91553721 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:91559084 original size:40 final size:40
Alignment explanation
Indices: 91558997--91559220 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
91558987 TCTTCGGATG
** *
91558997 ATATCCGGGCTAAGAACCGAAGGCACTTTGTTCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
** *
91559038 ATATCCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
91559078 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
91559119 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
91559159 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
91559199 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
91559221 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.08
40 90 0.55
41 60 0.37
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:91559131 original size:81 final size:80
Alignment explanation
Indices: 91558996--91559220 Score: 292
Period size: 81 Copynumber: 2.8 Consensus size: 80
91558986 TTCTTCGGAT
* *
91558996 GATATCCGGGCTAAGAACCGAAGGCACTTTGTTCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
*
91559061 CATTTGCACTAGTGAC
65 CATTTGCACGAGTGAC
91559077 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
** *
91559142 CATTTGTGCGAGTTAC
65 CATTTGCACGAGTGAC
* * * * * * *
91559158 TATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGTCCCGAAGG
91559221 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.12
81 99 0.77
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
ATTTGCACGAGTGAC
Found at i:91559319 original size:18 final size:18
Alignment explanation
Indices: 91559296--91559331 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
91559286 ATAATAAGGT
91559296 ATGTTTCGTATATGCATC
1 ATGTTTCGTATATGCATC
91559314 ATGTTTCGTATATGCATC
1 ATGTTTCGTATATGCATC
91559332 GGAAAGTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
ATGTTTCGTATATGCATC
Found at i:91562980 original size:13 final size:13
Alignment explanation
Indices: 91562962--91562996 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
91562952 ATTCATTTTG
91562962 AGGCACACGGCCA
1 AGGCACACGGCCA
91562975 AGGCACACGGCCA
1 AGGCACACGGCCA
91562988 AGGCACACG
1 AGGCACACG
91562997 CCCGTGTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.37, G:0.31, T:0.00
Consensus pattern (13 bp):
AGGCACACGGCCA
Found at i:91564906 original size:40 final size:40
Alignment explanation
Indices: 91564847--91565015 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
91564837 CGGGACTTTA
* * *
91564847 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
91564887 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
91564927 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
91564967 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
91565007 CCCGGATAT
1 CCCGGATAT
91565016 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:91572825 original size:40 final size:40
Alignment explanation
Indices: 91572766--91572896 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
91572756 CGGGACTTTA
* * *
91572766 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
91572806 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
91572846 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
91572886 CCCGGATATAA
1 CCCGGATATAA
91572897 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:91572929 original size:39 final size:40
Alignment explanation
Indices: 91572783--91572933 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
91572773 ATCACGATTT
* * * *
91572783 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
91572823 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
91572863 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
91572902 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
91572934 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:91575050 original size:40 final size:40
Alignment explanation
Indices: 91574926--91575077 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
91574916 TGAATGATGT
* * * *
91574926 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTATAA
* * *
91574966 CCGGACTAAGAT-CCGAAGCCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTATAA
* *
91575005 TCCGGGTTAAGTCACGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
** * *
91575046 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
91575078 CGTTATATCC
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
39 2 0.02
40 78 0.88
41 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
Found at i:91583808 original size:79 final size:82
Alignment explanation
Indices: 91583668--91583852 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
91583658 TCGAATGATG
* * *
91583668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
91583732 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
91583748 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
91583810 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
91583828 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91583853 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:91583860 original size:40 final size:40
Alignment explanation
Indices: 91583669--91583860 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
91583659 CGAATGATGT
* * * * *
91583669 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
91583709 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
91583749 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
91583788 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
91583828 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
91583861 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Done.