Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 295 of 425
Found at i:91583883 original size:79 final size:79
Alignment explanation
Indices: 91583668--91583885 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
91583658 TCGAATGATG
* * * * ** *
91583668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
91583731 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
91583748 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
91583813 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
91583828 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
91583886 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:91591801 original size:40 final size:39
Alignment explanation
Indices: 91591718--91591909 Score: 145
Period size: 40 Copynumber: 4.8 Consensus size: 39
91591708 TCGAATGATG
* * * * *
91591718 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
91591758 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
91591798 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
91591837 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
91591878 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
91591910 CGTTATATCC
Statistics
Matches: 123, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:91591858 original size:79 final size:82
Alignment explanation
Indices: 91591718--91591902 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
91591708 TCGAATGATG
* * *
91591718 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
91591782 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* * **
91591798 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTATTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
91591860 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
91591878 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91591903 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:91591924 original size:79 final size:79
Alignment explanation
Indices: 91591771--91591935 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
91591761 GGACTAGGAT
* * *
91591771 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAA
1 CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
91591836 ACCCGGGTTAAGTC
66 ACCCGGGTTAAGTC
* ** * *
91591850 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTT
1 CCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCATT
* * *
91591914 ATATCC-GGTTAAGTT
64 AAACCCGGGTTAAGTC
91591929 CCGAAGG
1 CCGAAGG
91591936 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
ACCCGGGTTAAGTC
Found at i:91594757 original size:25 final size:25
Alignment explanation
Indices: 91594709--91594766 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
91594699 ATAAAACCTA
*
91594709 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAAT-AAAAAGTATTAAAGGAAGAT
91594735 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAAGGAAGAT
91594760 -AAATAAA
1 AAAATAAA
91594767 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGGAAGAT
Found at i:91613578 original size:26 final size:26
Alignment explanation
Indices: 91613548--91613629 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
91613538 TGAAATTCCC
91613548 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
91613574 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
91613600 ATCATCGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91613626 ATCA
1 ATCA
91613630 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.28, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91614732 original size:20 final size:20
Alignment explanation
Indices: 91614694--91614732 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91614684 TAAATTTTAA
* * *
91614694 ATATAAAATATTTATCAATT
1 ATATAAAATACTCACCAATT
91614714 ATATAAAATACTCACCAAT
1 ATATAAAATACTCACCAAT
91614733 CAACTCTAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAATACTCACCAATT
Found at i:91615644 original size:5 final size:5
Alignment explanation
Indices: 91615629--91615663 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
91615619 ATTACATAAT
* *
91615629 ATATA AAATA ACATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
91615664 CATAAACACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (5 bp):
ATATA
Found at i:91619978 original size:23 final size:21
Alignment explanation
Indices: 91619952--91619995 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
91619942 CTAATTATTT
*
91619952 TAAAAGGTTAATTAGTAATTAAA
1 TAAAAGGTAAATTA--AATTAAA
*
91619975 TAAATGGTAAATTAAATTAAA
1 TAAAAGGTAAATTAAATTAAA
91619996 GGATGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (21 bp):
TAAAAGGTAAATTAAATTAAA
Found at i:91620275 original size:18 final size:18
Alignment explanation
Indices: 91620254--91620304 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
91620244 ACAATTCTTT
91620254 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* *
91620272 TCTCTTCATCTATTTCTTC
1 TCTCTTCTTCT-TTTCTCC
*
91620291 T-TATTCTTCTTTTC
1 TCTCTTCTTCTTTTC
91620305 CTTTATAGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.14
18 17 0.61
19 7 0.25
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:91621565 original size:28 final size:28
Alignment explanation
Indices: 91621525--91621661 Score: 177
Period size: 28 Copynumber: 4.9 Consensus size: 28
91621515 GGAGGAAGCG
*
91621525 TTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
91621553 TTCTGGTGGCTCTACCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
91621581 TTTTTGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
91621609 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
91621637 ATCTGGTGACACTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
91621662 ATTCTAGCAG
Statistics
Matches: 95, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 6 0.06
28 89 0.94
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:91629244 original size:356 final size:356
Alignment explanation
Indices: 91628591--91629305 Score: 1430
Period size: 356 Copynumber: 2.0 Consensus size: 356
91628581 GGGGTTAGAT
91628591 CTGCATCAGAATCGAATAGGAACTAATATGAATCGTTGACTGAAGGAACCGGTGGTAAGTTTCTG
1 CTGCATCAGAATCGAATAGGAACTAATATGAATCGTTGACTGAAGGAACCGGTGGTAAGTTTCTG
91628656 AATCTATTCTTTATTTCGGGTTTTAGAAAAAGCTGAAACCCCTAAAGACTTAGGGAGGCTGTCGA
66 AATCTATTCTTTATTTCGGGTTTTAGAAAAAGCTGAAACCCCTAAAGACTTAGGGAGGCTGTCGA
91628721 TTGGGCCCTATGGCTCTTAGGGTTGTGAAAATTGTTTTATTGTGATGATAGTATGATCTAGAGGC
131 TTGGGCCCTATGGCTCTTAGGGTTGTGAAAATTGTTTTATTGTGATGATAGTATGATCTAGAGGC
91628786 TGCTGATCAGAGGCTTGGACAAGTGGACCGACTGGATCTAAACCTAGTCGCTAGATTCGGAAAAA
196 TGCTGATCAGAGGCTTGGACAAGTGGACCGACTGGATCTAAACCTAGTCGCTAGATTCGGAAAAA
91628851 GGTAGGATCTCTAGTGCCTAAAGTGTTAATGGCCAACTTTTGGGTAAGGAGTTTTGTATACAAGC
261 GGTAGGATCTCTAGTGCCTAAAGTGTTAATGGCCAACTTTTGGGTAAGGAGTTTTGTATACAAGC
91628916 TGTTATGGATTCATAGTTAACGTATTGGTAA
326 TGTTATGGATTCATAGTTAACGTATTGGTAA
91628947 CTGCATCAGAATCGAATAGGAACTAATATGAATCGTTGACTGAAGGAACCGGTGGTAAGTTTCTG
1 CTGCATCAGAATCGAATAGGAACTAATATGAATCGTTGACTGAAGGAACCGGTGGTAAGTTTCTG
91629012 AATCTATTCTTTATTTCGGGTTTTAGAAAAAGCTGAAACCCCTAAAGACTTAGGGAGGCTGTCGA
66 AATCTATTCTTTATTTCGGGTTTTAGAAAAAGCTGAAACCCCTAAAGACTTAGGGAGGCTGTCGA
91629077 TTGGGCCCTATGGCTCTTAGGGTTGTGAAAATTGTTTTATTGTGATGATAGTATGATCTAGAGGC
131 TTGGGCCCTATGGCTCTTAGGGTTGTGAAAATTGTTTTATTGTGATGATAGTATGATCTAGAGGC
91629142 TGCTGATCAGAGGCTTGGACAAGTGGACCGACTGGATCTAAACCTAGTCGCTAGATTCGGAAAAA
196 TGCTGATCAGAGGCTTGGACAAGTGGACCGACTGGATCTAAACCTAGTCGCTAGATTCGGAAAAA
91629207 GGTAGGATCTCTAGTGCCTAAAGTGTTAATGGCCAACTTTTGGGTAAGGAGTTTTGTATACAAGC
261 GGTAGGATCTCTAGTGCCTAAAGTGTTAATGGCCAACTTTTGGGTAAGGAGTTTTGTATACAAGC
91629272 TGTTATGGATTCATAGTTAACGTATTGGTAA
326 TGTTATGGATTCATAGTTAACGTATTGGTAA
91629303 CTG
1 CTG
91629306 ACTGGAGGCA
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
356 359 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (356 bp):
CTGCATCAGAATCGAATAGGAACTAATATGAATCGTTGACTGAAGGAACCGGTGGTAAGTTTCTG
AATCTATTCTTTATTTCGGGTTTTAGAAAAAGCTGAAACCCCTAAAGACTTAGGGAGGCTGTCGA
TTGGGCCCTATGGCTCTTAGGGTTGTGAAAATTGTTTTATTGTGATGATAGTATGATCTAGAGGC
TGCTGATCAGAGGCTTGGACAAGTGGACCGACTGGATCTAAACCTAGTCGCTAGATTCGGAAAAA
GGTAGGATCTCTAGTGCCTAAAGTGTTAATGGCCAACTTTTGGGTAAGGAGTTTTGTATACAAGC
TGTTATGGATTCATAGTTAACGTATTGGTAA
Found at i:91629853 original size:28 final size:28
Alignment explanation
Indices: 91629807--91629869 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
91629797 GGAGGAAGCG
* * * *
91629807 TTCTGGTGGCTCTGTCACAAATATTTGT
1 TTCTGGTAGCCCTGCCACAAATATCTGT
*
91629835 TTCTGGTAGCCCTGCCACAATTATCTGT
1 TTCTGGTAGCCCTGCCACAAATATCTGT
*
91629863 ATCTGGT
1 TTCTGGT
91629870 GACTCTCTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (28 bp):
TTCTGGTAGCCCTGCCACAAATATCTGT
Found at i:91638437 original size:19 final size:19
Alignment explanation
Indices: 91638409--91638449 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
91638399 TCGGGACCAA
* * *
91638409 TTTGATAACTTATAAAAGT
1 TTTGAAAACTTAGAAAAAT
91638428 TTTGAAAACTTAGAAAAAT
1 TTTGAAAACTTAGAAAAAT
91638447 TTT
1 TTT
91638450 CAACTTTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (19 bp):
TTTGAAAACTTAGAAAAAT
Found at i:91638686 original size:53 final size:53
Alignment explanation
Indices: 91638606--91638711 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
91638596 GGAGGCTACT
*
91638606 TGTAACACCCCGTACCCGAGTCTGTTACCGGAGTCGAACACAAGGTGCACACA
1 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCGAACACAAGGTGCACACA
91638659 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCGAACACAAGGTGCACACA
1 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCGAACACAAGGTGCACACA
91638712 GACTTAACTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.16
Consensus pattern (53 bp):
TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCGAACACAAGGTGCACACA
Found at i:91640102 original size:40 final size:39
Alignment explanation
Indices: 91640042--91640244 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 39
91640032 CGAAATTTAA
* ** *
91640042 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
91640082 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
91640122 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
91640162 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
* * *
91640202 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
91640242 CCG
1 CCG
91640245 AGTATCATTC
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 140 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:91640186 original size:80 final size:78
Alignment explanation
Indices: 91640042--91640244 Score: 244
Period size: 80 Copynumber: 2.5 Consensus size: 78
91640032 CGAAATTTAA
* * * ** *
91640042 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
*
91640107 CCTTCGGGTCTTAGC
64 CCTTCGGGACTTAGC
* * *
91640122 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
91640187 CCTTCGGGACTTAGC
64 CCTTCGGGACTTAGC
* *
91640202 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCG
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCG
91640245 AGTATCATTC
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 102 0.96
81 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCC
TTCGGGACTTAGC
Found at i:91648206 original size:40 final size:40
Alignment explanation
Indices: 91648157--91648362 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
91648147 TCTTCGGAAT
* * *
91648157 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
91648196 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
91648236 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
91648276 TTAGCCCGGATATAATCACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
91648315 TTAGCCCGGATAT-ATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
91648354 TTAGCCCGG
1 TTAGCCCGG
91648363 GTATCATTCA
Statistics
Matches: 143, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
38 21 0.15
39 32 0.22
40 89 0.62
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:91655467 original size:46 final size:46
Alignment explanation
Indices: 91655416--91655597 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
91655406 AGTTAAATAT
91655416 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
91655462 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
91655508 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
91655554 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
91655598 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:91655655 original size:47 final size:47
Alignment explanation
Indices: 91655601--91655711 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
91655591 ATGTATGAGA
* * *
91655601 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
91655648 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
91655695 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
91655712 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:91658377 original size:40 final size:40
Alignment explanation
Indices: 91658270--91658532 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
91658260 CTCGACGATG
*
91658270 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
91658310 ATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
91658349 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
91658389 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
91658429 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
91658469 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
91658509 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
91658533 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.18
40 174 0.82
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:91662018 original size:46 final size:46
Alignment explanation
Indices: 91661967--91662148 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
91661957 AGTTAAATAT
91661967 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
91662013 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
91662059 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
91662105 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
91662149 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:91662206 original size:47 final size:47
Alignment explanation
Indices: 91662152--91662262 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
91662142 ATGTATGAGA
* * *
91662152 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
91662199 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
91662246 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
91662263 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:91665863 original size:53 final size:53
Alignment explanation
Indices: 91665783--91665888 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
91665773 CCAATAAAAT
*
91665783 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCGAACACAAGGTGCACACA
1 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCAAACACAAGGTGCACACA
*
91665836 TGTAACACCCCGTACCTGAGTCCGTTACCGGAGTCAAACACAAGGTGCACACA
1 TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCAAACACAAGGTGCACACA
91665889 GACTTAACTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.29, C:0.33, G:0.22, T:0.16
Consensus pattern (53 bp):
TGTAACACCCCGTACCCGAGTCCGTTACCGGAGTCAAACACAAGGTGCACACA
Found at i:91667278 original size:40 final size:39
Alignment explanation
Indices: 91667218--91667421 Score: 178
Period size: 40 Copynumber: 5.1 Consensus size: 39
91667208 CGAAATTTAA
* ** *
91667218 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
91667258 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
91667298 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * * * *
91667338 CCGGATATAATC-AGTAGCATAAATGCCTTCAGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
* * *
91667378 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
91667418 CCGG
1 CCGG
91667422 GTATCATTCA
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
40 137 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:91667362 original size:80 final size:78
Alignment explanation
Indices: 91667218--91667421 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 78
91667208 CGAAATTTAA
* * * ** *
91667218 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
* *
91667283 CCTTCGGGTCTTAGC
64 CCTTCAGGACTTAGC
* * * *
91667298 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCAGTAGCATAAATG
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
91667363 CCTTCAGGACTTAGC
64 CCTTCAGGACTTAGC
* *
91667378 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
91667422 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 101 0.96
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCC
TTCAGGACTTAGC
Found at i:91679528 original size:272 final size:272
Alignment explanation
Indices: 91679033--91679581 Score: 1037
Period size: 272 Copynumber: 2.0 Consensus size: 272
91679023 ATAGTTCTAG
91679033 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACATCTAAAACA
1 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACATCTAAAACA
91679098 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTAATAATACCCCTAGGA
66 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTAATAATACCCCTAGGA
91679163 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
131 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
*
91679228 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATTAGCTAAATCATTGTTAA
196 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTAA
*
91679293 TAGTTAAACTA-
261 TAGTCAAACTAC
* **
91679304 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCTATGTCTAAAACA
1 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACATCTAAAACA
91679369 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
66 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATT-AATAATACCCCTAGG
91679434 AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
130 AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
91679499 ATTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
195 ATTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
91679564 ATAGTCAAACTAC
260 ATAGTCAAACTAC
91679577 CAATT
1 CAATT
91679582 AAATAAGGAA
Statistics
Matches: 271, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
271 111 0.41
272 155 0.57
273 5 0.02
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.32
Consensus pattern (272 bp):
CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACATCTAAAACA
ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTAATAATACCCCTAGGA
AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTAA
TAGTCAAACTAC
Found at i:91688035 original size:50 final size:50
Alignment explanation
Indices: 91687972--91688197 Score: 240
Period size: 50 Copynumber: 4.5 Consensus size: 50
91687962 TTAGATCACG
*
91687972 TGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * * * ** ** * *
91688022 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTACAATCTCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA-GGTCGCA
* * * *
91688073 TGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * * *
91688123 TGTGTAGTATTAAGTGCAAGCTATTACGTGTACCGGATTA-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGTCGCA
*
91688172 TGTGTAGTTCTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91688198 TTCCTACCAG
Statistics
Matches: 141, Mismatches: 33, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
49 27 0.19
50 73 0.52
51 41 0.29
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
Found at i:91688156 original size:101 final size:101
Alignment explanation
Indices: 91687970--91688156 Score: 284
Period size: 101 Copynumber: 1.9 Consensus size: 101
91687960 TTTTAGATCA
* *
91687970 CGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
* *
91688035 GTGCAGGCTACTATGCGTACCCGACAACTACAATCT
66 GTGCAAGCTACTACGCGTACCCGACAACTACAATCT
* * * *
91688071 CGTGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAGTTAGGTCACGTGTGTAGTATTAA
1 CGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
* *
91688136 GTGCAAGCTATTACGTGTACC
66 GTGCAAGCTACTACGCGTACC
91688157 GGATTATTGG
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (101 bp):
CGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
GTGCAAGCTACTACGCGTACCCGACAACTACAATCT
Found at i:91688430 original size:16 final size:15
Alignment explanation
Indices: 91688409--91688438 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91688399 GAATGGAGTA
91688409 AGTGAAATTCTGTAAG
1 AGTGAAATT-TGTAAG
91688425 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
91688439 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:91692072 original size:16 final size:16
Alignment explanation
Indices: 91692046--91692085 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
91692036 CTTTGCTGGC
*
91692046 CTTTTTT-TCTTTTTT
1 CTTTTTTATCTTTTCT
91692061 CTTTTTTATCTTTTCT
1 CTTTTTTATCTTTTCT
91692077 CTTTCTTTA
1 CTTT-TTTA
91692086 GGTAAAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 11 0.50
17 4 0.18
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTTTATCTTTTCT
Found at i:91692997 original size:20 final size:20
Alignment explanation
Indices: 91692969--91693013 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
91692959 GATTTAAAAT
* *
91692969 ATATTTTAATTTAAATCTAA
1 ATATATTAATCTAAATCTAA
91692989 ATATATTAATCTAAATCTAA
1 ATATATTAATCTAAATCTAA
91693009 ATATA
1 ATATA
91693014 ATTCGCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATATTAATCTAAATCTAA
Found at i:91711196 original size:2 final size:2
Alignment explanation
Indices: 91711151--91711176 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91711141 ATAGACATGT
91711151 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
91711177 GCTGCATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91712593 original size:17 final size:18
Alignment explanation
Indices: 91712571--91712604 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91712561 TTATATAATT
*
91712571 TTAAATTTTA-AAAAATA
1 TTAAATATTATAAAAATA
91712588 TTAAATATTATAAAAAT
1 TTAAATATTATAAAAAT
91712605 TATCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTAAATATTATAAAAATA
Found at i:91713031 original size:20 final size:21
Alignment explanation
Indices: 91712992--91713033 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
91712982 AGCATACAGT
*
91712992 TATATTTTAAAGAATAAAATA
1 TATATCTTAAAGAATAAAATA
*
91713013 TATATCTTAAA-ATTAAAATA
1 TATATCTTAAAGAATAAAATA
91713033 T
1 T
91713034 TATTATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TATATCTTAAAGAATAAAATA
Found at i:91713427 original size:20 final size:20
Alignment explanation
Indices: 91713386--91713427 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
91713376 GTAAATAATT
*
91713386 ATTTAATATATTTTACTTTC
1 ATTTAATATATTTTACTCTC
*
91713406 ATTTAATTTAATTTTA-TCTC
1 ATTTAATAT-ATTTTACTCTC
91713426 AT
1 AT
91713428 AGCTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATATATTTTACTCTC
Found at i:91714460 original size:29 final size:30
Alignment explanation
Indices: 91714409--91714476 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
91714399 TTTATTATGG
*
91714409 TGTACTTGTACTTTTATAAAATGTTTAACGT
1 TGTACTTGTAC-TTTAGAAAATGTTTAACGT
*
91714440 TGTACTTGTA-TTTAGAAAATGTTTAATGT
1 TGTACTTGTACTTTAGAAAATGTTTAACGT
*
91714469 AGTACTTG
1 TGTACTTG
91714477 AATTATCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 24 0.71
31 10 0.29
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.47
Consensus pattern (30 bp):
TGTACTTGTACTTTAGAAAATGTTTAACGT
Found at i:91714487 original size:29 final size:28
Alignment explanation
Indices: 91714422--91714490 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
91714412 ACTTGTACTT
* *
91714422 TTATAAAATGTTTAACGTTGTACTTGTAT
1 TTATAAAATGTTTAACGTAGTACTTG-AA
* *
91714451 TTAGAAAATGTTTAATGTAGTACTTGAA
1 TTATAAAATGTTTAACGTAGTACTTGAA
91714479 TTATCAAAATGT
1 TTAT-AAAATGT
91714491 GTTTTATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.43
Consensus pattern (28 bp):
TTATAAAATGTTTAACGTAGTACTTGAA
Found at i:91714725 original size:56 final size:56
Alignment explanation
Indices: 91714646--91714799 Score: 200
Period size: 56 Copynumber: 2.8 Consensus size: 56
91714636 AGTAGTTAGG
* * * **
91714646 TAGGAATCAAATTACTAAAAGATAATATCCCATAACAATATTCTATAATATCTTAT
1 TAGGAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
* * * * * *
91714702 TAGGAAACAAATTGCTAAGAGATAATATCTCATAATAATATCCTATCACATCCCGT
1 TAGGAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
*
91714758 TAGGAATCAAATCACTAAAAGATAATATCCCATAATAATATC
1 TAGGAATCAAATTACTAAAAGATAATATCCCATAATAATATC
91714800 TTAACACCCC
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (56 bp):
TAGGAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
Found at i:91717564 original size:40 final size:39
Alignment explanation
Indices: 91717500--91717585 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
91717490 TATATATATA
* *
91717500 TAGCCAAAGCTATCTCAAATTGCACACCAAATGCCACTTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAATGCCA-TTT
* * * * *
91717540 TAGCCGAAGCTATTTCGAACTGCACACTAAGTGTCATTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAATGCCATTT
91717579 TAGCCGA
1 TAGCCGA
91717586 TAAGTCGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACTGCACACCAAATGCCATTT
Found at i:91719943 original size:40 final size:40
Alignment explanation
Indices: 91719794--91719961 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
91719784 TCTTCGGAAT
* * * *
91719794 TTAG-CCGGATATAACCACAAGCACAATTGCCTTTGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * * * *
91719833 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCAGGTT
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
91719873 TTAGCCCAGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
91719913 TTAGCCCGGATGTAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
91719953 TTAGCCCGG
1 TTAGCCCGG
91719962 GTATCATTCA
Statistics
Matches: 98, Mismatches: 28, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
39 3 0.03
40 94 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:91736201 original size:30 final size:30
Alignment explanation
Indices: 91736167--91736226 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91736157 ATTTAATACG
91736167 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
91736197 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91736227 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91747103 original size:47 final size:48
Alignment explanation
Indices: 91747029--91747158 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
91747019 AACCCCGCCC
* *
91747029 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT-T
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTATCATCA
*
91747077 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTATCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTATCAT-CA
*
91747122 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
91747159 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 1 0.01
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (48 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTATCATCA
Found at i:91747174 original size:46 final size:46
Alignment explanation
Indices: 91747027--91747174 Score: 146
Period size: 46 Copynumber: 3.2 Consensus size: 46
91747017 GTAACCCCGC
91747027 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * * *
91747076 -TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTATCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACAT
91747119 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
91747167 CCT-AGTGA
1 CCTAAGTGA
91747175 CATTTCACTT
Statistics
Matches: 81, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
43 3 0.04
45 3 0.04
46 35 0.43
47 32 0.40
48 8 0.10
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:91747612 original size:30 final size:30
Alignment explanation
Indices: 91747578--91747637 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91747568 ATTTAATACG
91747578 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
91747608 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91747638 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91755352 original size:2 final size:2
Alignment explanation
Indices: 91755345--91755396 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
91755335 TCATTTTAAC
91755345 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91755387 TA TA TA TA TA
1 TA TA TA TA TA
91755397 GCACAAATCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91770323 original size:46 final size:47
Alignment explanation
Indices: 91770257--91770350 Score: 147
Period size: 46 Copynumber: 2.0 Consensus size: 47
91770247 GTAACATTAG
*
91770257 GGTCACTTGTGTGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
1 GGTCACTTATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
*
91770302 GGTCACATTATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 GGTCAC-TTATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
91770350 G
1 G
91770351 ACTGTGACAG
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
45 6 0.14
46 19 0.43
47 13 0.30
48 6 0.14
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (47 bp):
GGTCACTTATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
Found at i:91772184 original size:40 final size:39
Alignment explanation
Indices: 91772016--91772186 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
91772006 AGAAATTGAA
* *
91772016 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
91772056 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
91772096 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
91772136 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
91772176 TGATATCCGGG
1 TGATATCCGGG
91772187 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:91780119 original size:40 final size:39
Alignment explanation
Indices: 91779951--91780136 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
91779941 AGAAATTGAA
* *
91779951 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
91779991 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
91780031 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
91780071 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* * *
91780111 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
91780137 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 4 0.03
40 107 0.90
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:91781649 original size:45 final size:44
Alignment explanation
Indices: 91781600--91781711 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 44
91781590 GATGAGAGCT
*
91781600 AGTGTAAGACATGTTTGGGACATGCATCGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTATGGGACATGCATCGCCTACGAGATGT--GCC
* * * *
91781645 AGTGTAAGACATGTCTGGGATATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTATGGGACATGCATCGCCTACGAGATGTGCC
91781689 AGTGTAAGACCATGTATGGGACA
1 AGTGTAAGA-CATGTATGGGACA
91781712 GGGCGTTGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
44 11 0.19
45 40 0.68
46 8 0.14
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTATGGGACATGCATCGCCTACGAGATGTGCC
Found at i:91784786 original size:27 final size:27
Alignment explanation
Indices: 91784756--91785147 Score: 469
Period size: 27 Copynumber: 14.5 Consensus size: 27
91784746 GTTTACCAAC
*
91784756 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
**
91784783 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*
91784810 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
* *
91784837 TTACTAAAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*
91784864 TCACCAAAATACCCTTGGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
**
91784891 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*
91784918 TTACCAAAATAACCTTGGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
* *
91784945 TTACTAAAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
* *
91784972 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
91784999 TTACCAAAATACCCTTGGTTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
* * * *
91785026 TTATCAAAATACCCCTAGTTTGTAGAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
* * *
91785053 TTACCAAAATACCCCTGATTTGTGAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*** * * ***
91785080 TTATTGAAATATCCTCGACCTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*** **
91785107 TTATTGAAATACCCTTGACTTGTAAAA
1 TTACCAAAATACCCTTGGTTTGTAAAA
*
91785134 TTACCAAAGTACCC
1 TTACCAAAATACCC
91785148 CTGATTTATA
Statistics
Matches: 313, Mismatches: 52, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 313 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TTACCAAAATACCCTTGGTTTGTAAAA
Found at i:91785216 original size:27 final size:27
Alignment explanation
Indices: 91785186--91785677 Score: 542
Period size: 27 Copynumber: 18.3 Consensus size: 27
91785176 CGATTTACAA
* *
91785186 AATTACCGAAACACCACTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91785213 AATTAGCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
91785240 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
91785267 AATTACTAAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
91785294 AATTATCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
91785321 AATTATTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
91785348 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
91785375 AATTATC-AAATACCCCTGTAGGGAAT
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
91785401 AATTATTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
91785428 AATTACCGAAATACCCTTATAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91785455 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91785482 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
91785509 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91785536 AATTACCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
91785563 AATTACCGAAATACCCCTGT-AGTGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
* *
91785590 AATTACCTAAATACCCTTGT-AGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* **
91785617 AATTACTGATTTACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
91785644 AATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACCGAAATACCC-CTGTAAGGTAG
91785671 AATTACC
1 AATTACC
91785678 ATTTTGCCCC
Statistics
Matches: 396, Mismatches: 64, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.06
27 367 0.93
28 5 0.01
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:91785688 original size:54 final size:54
Alignment explanation
Indices: 91785186--91785676 Score: 616
Period size: 54 Copynumber: 9.1 Consensus size: 54
91785176 CGATTTACAA
* * * * *
91785186 AATTACCGAAACACCACTGTAAGGTAGAATTAGCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* **
91785240 AATTATTGAAATACCCCTGTAAGGTAGAATTACTAAAATATCCC-TGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTTGTAGGGTAG
* * ** *
91785294 AATTA-TCGAAATACCACTGTAGGGTAGAATTATTGAAATACCCTTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * * * *
91785348 AATTACCGAAATACCCCTGTATGGTAGAATTATC-AAATACCCCTGTAGGGAAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * *
91785401 AATTATTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTATAGGGTAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
*
91785455 AATTACTGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
91785509 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCAC-TGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACC-CTTGTAGGGTAG
* * *
91785563 AATTACCGAAATACCCCTGT-AGTGTAGAATTACCTAAATACCCTTGTAGGTTAG
1 AATTACTGAAATACCCCTGTAAG-GTAGAATTACCGAAATACCCTTGTAGGGTAG
** * *
91785617 AATTACTGATTTACCCCTGTAAGGTAGAATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCT-TGTAGGGTAG
91785671 AATTAC
1 AATTAC
91785677 CATTTTGCCC
Statistics
Matches: 383, Mismatches: 44, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
53 51 0.13
54 325 0.85
55 7 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:91786288 original size:28 final size:27
Alignment explanation
Indices: 91786249--91786316 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
91786239 AAGTGGCTTT
* *
91786249 CCACATTATCTG-ATTCTGGTGGCTATG
1 CCACAATATCTGTA-TCTGGTGACTATG
*
91786276 CCACAAATATCTGTATCTGGTGACTCTG
1 CCAC-AATATCTGTATCTGGTGACTATG
*
91786304 TCACAATATCTGT
1 CCACAATATCTGT
91786317 TTCGGCAGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
27 13 0.37
28 21 0.60
29 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
CCACAATATCTGTATCTGGTGACTATG
Found at i:91786471 original size:31 final size:31
Alignment explanation
Indices: 91786436--91786514 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
91786426 TTGCATTCAC
* * *
91786436 ATTCTGATTTTGATTTTGTTACCT-ACTACTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TACTG
**
91786467 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
91786498 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
91786515 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 41 0.98
32 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:91786475 original size:6 final size:6
Alignment explanation
Indices: 91786464--91786523 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
91786454 TTACCTACTA
* *
91786464 CTGATT CTGATT CTGATT CTG-TCAC CTGATT TTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
91786513 CT-AGTT CTGAT
1 CTGA-TT CTGAT
91786524 AATGTTTCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 38 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:91788808 original size:27 final size:27
Alignment explanation
Indices: 91788471--91788801 Score: 437
Period size: 27 Copynumber: 12.3 Consensus size: 27
91788461 TTAGTTTACC
91788471 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
91788498 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
91788525 AAATTGCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
91788552 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
91788579 AAATCACCAAAATACCCCTGGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
91788606 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
91788633 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * **
91788660 AAATTAATAAAATACCCTTGGTTCATA
1 AAATTACCAAAATACCCCTGGTTTGTA
91788687 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
91788714 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
91788741 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
91788768 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
91788795 AAATTAC
1 AAATTAC
91788802 TGAAATATCC
Statistics
Matches: 262, Mismatches: 42, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 262 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:91788822 original size:81 final size:82
Alignment explanation
Indices: 91788471--91788868 Score: 384
Period size: 81 Copynumber: 4.9 Consensus size: 82
91788461 TTAGTTTACC
* * * * *
91788471 AAATTACCAAAATA-CCCCTG-GTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTGCCA
1 AAATTACTAAAATATCCCC-GAGTTTGTAAAATTATCAAAATACCCCTGGTTTATAAAATTACCA
91788534 AAATACCCCTGGTTTGTA
65 AAATACCCCTGGTTTGTA
* * * * *
91788552 AAATTACTAAAATA-CCCTTG-GTTTATAAAATCACCAAAATACCCCTGGTTTTTAAAATTACCA
1 AAATTACTAAAATATCCC-CGAGTTTGTAAAATTATCAAAATACCCCTGGTTTATAAAATTACCA
* **
91788615 AAATACCCTTGGTTTACA
65 AAATACCCCTGGTTTGTA
* * * *
91788633 AAATTACCAAAATA-CCCCTAGTTTGTAAAATTAAT-AAAATACCCTTGGTTCATAAAATTACCA
1 AAATTACTAAAATATCCCCGAGTTTGTAAAATT-ATCAAAATACCCCTGGTTTATAAAATTACCA
91788696 AAATACCCCTGGTTTGTA
65 AAATACCCCTGGTTTGTA
* * * *
91788714 AAATTA-TCAAAATA-CCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAGAATTACCA
1 AAATTACT-AAAATATCCCCGAGTTTGTAAAATTATCAAAATACCCCTGGTTTATAAAATTACCA
* *
91788777 AAATACCCCTGATTTGTG
65 AAATACCCCTGGTTTGTA
* * ** ** ** *
91788795 AAATTACTGAAATATCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACTAAAATATCCCCGAGTTTGTAAAATTATCAAAATACCCCT-GGTTTATAAAATTACCA
*
91788858 AAGTACCCCTG
65 AAATACCCCTG
91788869 ATTTACAGAA
Statistics
Matches: 266, Mismatches: 43, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
80 6 0.02
81 254 0.95
82 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (82 bp):
AAATTACTAAAATATCCCCGAGTTTGTAAAATTATCAAAATACCCCTGGTTTATAAAATTACCAA
AATACCCCTGGTTTGTA
Found at i:91788864 original size:27 final size:26
Alignment explanation
Indices: 91788471--91788872 Score: 291
Period size: 27 Copynumber: 14.9 Consensus size: 26
91788461 TTAGTTTACC
*
91788471 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * **
91788498 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
91788525 AAATTGCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
91788552 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
91788579 AAATCACCAAAATACCCCTGGTTTTTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * **
91788606 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*
91788633 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
** * * **
91788660 AAATTAATAAAATACCCTTGGTTCATA
1 AAATTACCAAAATACCC-CGATTTGTA
*
91788687 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
91788714 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
91788741 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
91788768 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** * **
91788795 AAATTACTGAAATATCCTCGACCTGTA
1 AAATTACCAAAATA-CCCCGATTTGTA
*** *
91788822 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
91788849 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCC-GATTT
91788873 ACAGAATTAC
Statistics
Matches: 304, Mismatches: 58, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.01
27 297 0.98
28 4 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:91788934 original size:27 final size:27
Alignment explanation
Indices: 91788904--91789324 Score: 477
Period size: 27 Copynumber: 15.6 Consensus size: 27
91788894 CGATTTACAA
*
91788904 AATTACCGAAACACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91788931 AATTACTGAAATACCCATGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
91788958 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
91788985 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
91789012 AATTACCGAAATACCGTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*** *
91789039 AATTATTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91789066 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
91789093 AATTATCGAAATACCCCTATAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
91789120 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
91789147 AATTACCGAAATACCCCCGTAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
91789174 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
91789201 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
91789228 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
91789255 AATTACCGAAATACCACTGT-AGTGCAA
1 AATTACCGAAATACCCCTGTAAG-GTAG
91789282 AATTACCGAAATACCCCTGT-AGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
91789309 AATTACCGAAATACCC
1 AATTACCGAAATACCC
91789325 TATTAGAAAT
Statistics
Matches: 335, Mismatches: 57, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.01
27 332 0.99
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:91788962 original size:54 final size:54
Alignment explanation
Indices: 91788904--91789390 Score: 529
Period size: 54 Copynumber: 9.1 Consensus size: 54
91788894 CGATTTACAA
* * * * *
91788904 AATTACCGAAACACCCCTGTAAGGTAGAATTACTGAAATACCCATGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* **
91788958 AATTATTGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* ** * * *** * *
91789012 AATTACCGAAATACCGTTATAGGGTAGAATTATTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
91789066 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
91789120 AATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCCGTAGGGTAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
91789174 AATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
91789228 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCACTGTAGTGCAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
91789282 AATTACCGAAATACCCCTGT-AGGTTAGAATTACCGAAATA-CCC--TA--TTAG
1 AATTACTGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCCTGTAGGGTAG
* ** * * * *
91789331 AAATACTGATTTACCCCTGTAATGTAGAATTACAGAGATACCCTCT-TAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC-CTGTAGGGTAG
91789385 AATTAC
1 AATTAC
91789391 CATTTTGCCC
Statistics
Matches: 370, Mismatches: 56, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
49 31 0.08
50 4 0.01
51 3 0.01
52 2 0.01
53 5 0.01
54 325 0.88
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:91789984 original size:27 final size:26
Alignment explanation
Indices: 91789954--91790035 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
91789944 ATTTTGTTAA
* *
91789954 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
91789981 GTGGCTATGCCACAAATATCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGT-TCTG
* * *
91790009 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
91790035 G
1 G
91790036 CAGCAATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 22 0.46
28 21 0.44
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:91790181 original size:25 final size:25
Alignment explanation
Indices: 91790153--91790214 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
91790143 CATTCACATT
* *
91790153 CTGATTTTGATTATGTTACCTGATA
1 CTGATTCTGATTATGTCACCTGATA
* *
91790178 CTGATTCTGATTTTGTCACCTGATT
1 CTGATTCTGATTATGTCACCTGATA
91790203 CTGATTCTGATT
1 CTGATTCTGATT
91790215 CTGATTCTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTATGTCACCTGATA
Found at i:91790189 original size:6 final size:6
Alignment explanation
Indices: 91790150--91790222 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
91790140 TTGCATTCAC
* * * * *
91790150 ATTCTG ATTTTG ATTATG -TTACCTG ATACTG ATTCTG ATTTTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
91790200 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
91790223 AGTTTTGATA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
5 3 0.06
6 42 0.81
7 5 0.10
8 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:91794170 original size:56 final size:56
Alignment explanation
Indices: 91794079--91794232 Score: 211
Period size: 56 Copynumber: 2.8 Consensus size: 56
91794069 GGTGTCACAG
* *
91794079 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
* * *
91794135 TAGGAATCAAATTGCTAAAAGATCATGTCTC-ATAATAATATCCTATAACATCTAAT
1 TAGGAATCAAATTGCTAAAAGATAATATC-CAATAATAATATCCTATAACATCCAAT
* * * *
91794191 TAGGAATCAAATTGCTAAAAGTTAACATCCCATGATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATC
91794233 TTAACAACTA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 84 0.98
57 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
Found at i:91797317 original size:40 final size:40
Alignment explanation
Indices: 91797273--91797416 Score: 270
Period size: 40 Copynumber: 3.6 Consensus size: 40
91797263 TTGGCTCGGA
* *
91797273 TATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
91797313 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
91797353 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
91797393 TATAATAACCCGCACGAATGCCTT
1 TATAATAACCCGCACGAATGCCTT
91797417 TGACATATAT
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:91814869 original size:48 final size:48
Alignment explanation
Indices: 91814798--91814893 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
91814788 TGAGAAGGAT
91814798 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
*
91814846 GATTAAAGGCTGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
91814894 ACTAGGCTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.38
Consensus pattern (48 bp):
GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
Found at i:91824085 original size:28 final size:27
Alignment explanation
Indices: 91824053--91824143 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 27
91824043 TGACAGAGTT
91824053 ACCAGATATAGATATTTGTGGCAGTGCC
1 ACCAGA-ATAGATATTTGTGGCAGTGCC
* *
91824081 ACCAGAATCAGATATTTGTGGTAGAGCC
1 ACCAGAAT-AGATATTTGTGGCAGTGCC
*
91824109 ACCAGAAACAGATATTTGTGGCA-TAGCC
1 ACCAG-AATAGATATTTGTGGCAGT-GCC
91824137 ACCAGAA
1 ACCAGAA
91824144 CGCTTCCTCC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
27 4 0.07
28 49 0.89
29 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
ACCAGAATAGATATTTGTGGCAGTGCC
Found at i:91827559 original size:25 final size:26
Alignment explanation
Indices: 91827531--91827581 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
91827521 ATTGTAAATC
91827531 AGAAAAATATCTTTAA-A-AATTTTCT
1 AGAAAAATATC-TTAAGAGAATTTTCT
* *
91827556 AGAATAATCTCTTAAGAGAATTTTCT
1 AGAAAAATATCTTAAGAGAATTTTCT
91827582 CTCTGCAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 4 0.18
25 10 0.45
26 8 0.36
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (26 bp):
AGAAAAATATCTTAAGAGAATTTTCT
Found at i:91829478 original size:40 final size:40
Alignment explanation
Indices: 91829373--91829514 Score: 189
Period size: 40 Copynumber: 3.5 Consensus size: 40
91829363 AGCCCGGTTA
**
91829373 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
91829413 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
91829453 TAGTAACTCACACGAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
91829493 TAGTCACTTAGCACAAA-GCCTT
1 TAGTAAC-TCGCACAAATGCCTT
91829515 TGGGACTTAG
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.90
41 6 0.07
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:91829524 original size:40 final size:41
Alignment explanation
Indices: 91829345--91829530 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 41
91829335 GCTACTCGTT
** *
91829345 CAAATGCCTTCGGGA-AATAGCCCGG-TTATAGTAAC-TCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTTAGCA
* *
91829385 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTTAGCA
* *
91829425 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTTAGCA
* * * *
91829465 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTTAGCA
*
91829506 CAAA-GCCTTTGGGA-CTTAGCCCGGA
1 CAAATGCC-TTCGGATCTTAGCCCGGA
91829531 CATCATTCAA
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 12 0.09
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTTAGCA
Found at i:91829524 original size:80 final size:80
Alignment explanation
Indices: 91829345--91829530 Score: 193
Period size: 80 Copynumber: 2.3 Consensus size: 80
91829335 GCTACTCGTT
** *
91829345 CAAATGCCTTCGGGA-AATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCC
* *
91829408 GGATTTAGTAACTCGCA
64 GGATATAGTAACTAGCA
* * **
91829425 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACACGAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCG
*
91829489 GATATAGTCACTTAGCA
65 GATATAGTAAC-TAGCA
*
91829506 CAAA-GCCTTTGGGA-CTTAGCCCGGA
1 CAAATGCC-TTCGGATCTTAGCCCGGA
91829531 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
79 6 0.07
80 68 0.76
81 15 0.17
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:91831498 original size:19 final size:19
Alignment explanation
Indices: 91831460--91831499 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
91831450 AAAATATCAT
*
91831460 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
91831479 ATTAA-TTTAATTGTACTTG
1 ATTAATTTTAATT-TACTTG
91831498 AT
1 AT
91831500 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:91836742 original size:135 final size:135
Alignment explanation
Indices: 91836500--91836770 Score: 524
Period size: 135 Copynumber: 2.0 Consensus size: 135
91836490 GGGAAAAACG
91836500 TATCAAAAGAGTGAAGAAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGAAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
*
91836565 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTT
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
91836630 ATTCA
131 ATTCA
*
91836635 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGAAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
91836700 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
91836765 ATTCA
131 ATTCA
91836770 T
1 T
91836771 TATATAAAAA
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.33
Consensus pattern (135 bp):
TATCAAAAGAGTGAAGAAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
ATTCA
Found at i:91837236 original size:23 final size:23
Alignment explanation
Indices: 91837210--91837262 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
91837200 GGTATTTCGA
*
91837210 TGCAAATGATAGTGGCACTTAAG
1 TGCAAATGAAAGTGGCACTTAAG
* *
91837233 TGCAAGTGAAAGTGGCACTTTAG
1 TGCAAATGAAAGTGGCACTTAAG
91837256 TGCAAAT
1 TGCAAAT
91837263 TAGCGATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCAAATGAAAGTGGCACTTAAG
Found at i:91856080 original size:17 final size:16
Alignment explanation
Indices: 91856049--91856091 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
91856039 GGGAAATCGA
*
91856049 AAAAGGAAAGGGAAAG
1 AAAATGAAAGGGAAAG
91856065 AAAATGAAAGGCGAAAG
1 AAAATGAAAGG-GAAAG
*
91856082 AGAATGAAAG
1 AAAATGAAAG
91856092 AAAGAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.33, T:0.05
Consensus pattern (16 bp):
AAAATGAAAGGGAAAG
Found at i:91863594 original size:31 final size:30
Alignment explanation
Indices: 91863537--91863594 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
91863527 CACATATTCA
*
91863537 CTTACACATATATCACATTGGCCATTCGGC
1 CTTACACATATATCACATTGGACATTCGGC
*
91863567 CTTATCACATATA-CACACTTTGACATTC
1 CTTA-CACATATATCACA-TTGGACATTC
91863595 ATCACATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTACACATATATCACATTGGACATTCGGC
Found at i:91863604 original size:47 final size:45
Alignment explanation
Indices: 91863503--91863611 Score: 139
Period size: 47 Copynumber: 2.4 Consensus size: 45
91863493 TGCACACTTT
* *
91863503 TCACAATTGGTCATTCGGCCTTATCACATATTCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
**
91863549 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTGACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTACACATAT-A
91863596 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
91863612 ATCTTAAGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 25 0.45
46 5 0.09
47 26 0.46
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
Found at i:91866203 original size:22 final size:20
Alignment explanation
Indices: 91866163--91866203 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
91866153 AGTCCTATTA
*
91866163 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
91866183 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
91866204 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:91867457 original size:40 final size:40
Alignment explanation
Indices: 91867413--91867608 Score: 338
Period size: 40 Copynumber: 4.9 Consensus size: 40
91867403 GAATACACAT
* * *
91867413 CACCAGCATGAATGCTCTTCAGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91867453 CACCAGCACGAATGCTCTTCGGGACTTAGCACGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
91867493 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91867533 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91867573 CTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
91867609 CATCGGCGAG
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:91870244 original size:31 final size:30
Alignment explanation
Indices: 91870187--91870244 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
91870177 CACATATTCA
*
91870187 CTTACACATATATCACATTGGCCATTCGGC
1 CTTACACATATATCACATTGGACATTCGGC
*
91870217 CTTATCACATATA-CACACTTTGACATTC
1 CTTA-CACATATATCACA-TTGGACATTC
91870245 ATCACATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTACACATATATCACATTGGACATTCGGC
Found at i:91870254 original size:47 final size:45
Alignment explanation
Indices: 91870153--91870261 Score: 139
Period size: 47 Copynumber: 2.4 Consensus size: 45
91870143 TGCACACTTT
* *
91870153 TCACAATTGGTCATTCGGCCTTATCACATATTCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
**
91870199 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTGACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTACACATAT-A
91870246 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
91870262 ATCTTAAGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 25 0.45
46 5 0.09
47 26 0.46
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
Found at i:91872844 original size:22 final size:20
Alignment explanation
Indices: 91872804--91872844 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
91872794 AGTCCTATTA
*
91872804 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
91872824 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
91872845 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:91874099 original size:40 final size:40
Alignment explanation
Indices: 91874055--91874250 Score: 338
Period size: 40 Copynumber: 4.9 Consensus size: 40
91874045 GAATACACAT
* * *
91874055 CACCAGCATGAATGCTCTTCAGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91874095 CACCAGCACGAATGCTCTTCGGGACTTAGCACGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
91874135 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91874175 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
91874215 CTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
91874251 CATCGGCGAG
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:91876886 original size:31 final size:30
Alignment explanation
Indices: 91876829--91876886 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
91876819 CACTTATTCA
*
91876829 CTTACACATATATCACATTGGCCATTCGGC
1 CTTACACATATATCACATTGGACATTCGGC
*
91876859 CTTATCACATATA-CACACTTTGACATTC
1 CTTA-CACATATATCACA-TTGGACATTC
91876887 ATCACATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTACACATATATCACATTGGACATTCGGC
Found at i:91876896 original size:47 final size:45
Alignment explanation
Indices: 91876795--91876903 Score: 130
Period size: 47 Copynumber: 2.4 Consensus size: 45
91876785 TGCACACTTT
* **
91876795 TCACAATTGGTCATTCGGCCTTATCACTTATTCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACTTACACACTTACACATATA
**
91876841 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTGACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCAC-T-TACACACTTACACATAT-A
91876888 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
91876904 ATCTTAAGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 21 0.38
46 6 0.11
47 28 0.51
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACTTACACACTTACACATATA
Found at i:91879258 original size:4 final size:4
Alignment explanation
Indices: 91879249--91879273 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91879239 ACTTTTTCCT
91879249 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
91879274 GTCATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:91881854 original size:12 final size:12
Alignment explanation
Indices: 91881837--91881865 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
91881827 AGAGGAAAGT
91881837 AACTACGTAAGG
1 AACTACGTAAGG
91881849 AACTACGTAAGG
1 AACTACGTAAGG
91881861 AACTA
1 AACTA
91881866 GTGCTTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (12 bp):
AACTACGTAAGG
Found at i:91882895 original size:26 final size:24
Alignment explanation
Indices: 91882854--91882908 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
91882844 TGAGTTCAAT
* *
91882854 AGAGCTTACTGTTCATTAGCTCAGAA
1 AGAGCTTAATGATCA-TAGCTC-GAA
*
91882880 TGAGCTTAATGATCATAGCTCGAA
1 AGAGCTTAATGATCATAGCTCGAA
91882904 AGAGC
1 AGAGC
91882909 GAATACGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 6 0.24
26 12 0.48
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (24 bp):
AGAGCTTAATGATCATAGCTCGAA
Found at i:91883058 original size:19 final size:19
Alignment explanation
Indices: 91883034--91883113 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 19
91883024 AAAAGCTATG
*
91883034 TGTTATACGGATGAATTAT
1 TGTTATACGGATGAATTAC
* * *
91883053 TGTTATAGGGTTGAAGTAC
1 TGTTATACGGATGAATTAC
* *
91883072 TGTTTATACGGATCAGTTAC
1 TG-TTATACGGATGAATTAC
*
91883092 TGTTAT-CGAATGAATTAC
1 TGTTATACGGATGAATTAC
91883110 TGTT
1 TGTT
91883114 TATATGATTG
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
18 13 0.27
19 21 0.44
20 14 0.29
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.41
Consensus pattern (19 bp):
TGTTATACGGATGAATTAC
Found at i:91883092 original size:20 final size:20
Alignment explanation
Indices: 91883069--91883117 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
91883059 AGGGTTGAAG
* *
91883069 TACTGTTTATACGGATCAGT
1 TACTGTTTATACGAATCAAT
*
91883089 TACTG-TTAT-CGAATGAAT
1 TACTGTTTATACGAATCAAT
91883107 TACTGTTTATA
1 TACTGTTTATA
91883118 TGATTGCGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 11 0.46
19 8 0.33
20 5 0.21
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (20 bp):
TACTGTTTATACGAATCAAT
Found at i:91886241 original size:13 final size:13
Alignment explanation
Indices: 91886223--91886247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91886213 CAGTAATCGC
91886223 ACACGGGCGTGTT
1 ACACGGGCGTGTT
91886236 ACACGGGCGTGT
1 ACACGGGCGTGT
91886248 CCCTACTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:91894388 original size:93 final size:93
Alignment explanation
Indices: 91894280--91894451 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
91894270 GCCCATAAGT
* * * *
91894280 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91894344 ATGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
*
91894373 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91894438 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
91894452 CAAATATCCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:91894442 original size:46 final size:46
Alignment explanation
Indices: 91894272--91894447 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
91894262 TGTAACCCGC
* * * *
91894272 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * * *
91894318 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
91894368 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
91894411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91894448 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 3 0.03
46 60 0.58
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:91907421 original size:13 final size:13
Alignment explanation
Indices: 91907405--91907437 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91907395 TTTGATTAAA
*
91907405 TTAGTTAATTAGT
1 TTAGATAATTAGT
91907418 TTAGATAATTAGT
1 TTAGATAATTAGT
91907431 TTA-ATAA
1 TTAGATAA
91907438 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:91908690 original size:20 final size:20
Alignment explanation
Indices: 91908662--91908727 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
91908652 AGGAAAATTA
91908662 TGTGATCTGAACTCATGAGT
1 TGTGATCTGAACTCATGAGT
* ** *
91908682 TGTGGTCTGAGTTCATGATTT
1 TGTGATCTGAACTCATGA-GT
* *
91908703 ATGTGATTTGAACTAATGAGT
1 -TGTGATCTGAACTCATGAGT
91908724 TGTG
1 TGTG
91908728 GTTTGAGTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
20 19 0.56
21 2 0.06
22 13 0.38
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.41
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:91908722 original size:42 final size:42
Alignment explanation
Indices: 91908659--91908743 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
91908649 ACTAGGAAAA
*
91908659 TTATGTGATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
* * *
91908701 TTATGTGATTTGAACTAATGAGTTGTGGTTTGAGTTTATGAT
1 TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
91908743 T
1 T
91908744 GTGAGTCACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.45
Consensus pattern (42 bp):
TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
Found at i:91908741 original size:20 final size:20
Alignment explanation
Indices: 91908676--91908746 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
91908666 ATCTGAACTC
* *
91908676 ATGAGTTGTGGTCTGAGTTC
1 ATGAGTTGTGGTTTGAGTTA
* * **
91908696 ATGATTTATGTGATTTGAACTA
1 ATGA-GT-TGTGGTTTGAGTTA
*
91908718 ATGAGTTGTGGTTTGAGTTT
1 ATGAGTTGTGGTTTGAGTTA
91908738 ATGA-TTGTG
1 ATGAGTTGTG
91908747 AGTCACATGT
Statistics
Matches: 38, Mismatches: 11, Indels: 5
0.70 0.20 0.09
Matches are distributed among these distances:
19 5 0.13
20 18 0.47
21 2 0.05
22 13 0.34
ACGTcount: A:0.21, C:0.04, G:0.30, T:0.45
Consensus pattern (20 bp):
ATGAGTTGTGGTTTGAGTTA
Found at i:91916017 original size:46 final size:45
Alignment explanation
Indices: 91915957--91916131 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
91915947 ACATCTCGTA
*
91915957 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCCCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCACAAG
** * * * *
91916003 GTTGATGCATGTCCCAGACATTTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCACAAG
* * *
91916049 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGC-TCG-CATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCGTCACAA---G
91916097 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
91916132 CACACAAATG
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 58 0.55
47 27 0.25
48 18 0.17
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCACAAG
Found at i:91928759 original size:46 final size:46
Alignment explanation
Indices: 91928692--91928783 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
91928682 CATTTAGGGA
91928692 GGCGTCGCTATATATTACAAACTCCTTGCCCGACTCCGGTTGCACT
1 GGCGTCGCTATATATTACAAACTCCTTGCCCGACTCCGGTTGCACT
91928738 GGCGTCGCTATATATTACAAACTCCTTGCCCGACTCCGGTTGCACT
1 GGCGTCGCTATATATTACAAACTCCTTGCCCGACTCCGGTTGCACT
91928784 AACACTGGGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCGTCGCTATATATTACAAACTCCTTGCCCGACTCCGGTTGCACT
Found at i:91933357 original size:47 final size:47
Alignment explanation
Indices: 91933064--91933428 Score: 234
Period size: 47 Copynumber: 7.7 Consensus size: 47
91933054 GTAAATTGCC
* * * * *
91933064 GATGCCATGTCCCAGTCATGGTCTTACACTGGCTATCATCATTGAGGCT
1 GATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCT
* * * *
91933113 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT-GCC
1 GATG-CATGTCCTAGACATGGTCTTACACTGGCTCT--CATAA-TGTGGCT
* * * * * * *
91933163 GATGCCATGTCCCAGACATGGTCTTACATTGACACATC-T--CGTAGCC
1 GATG-CATGTCCTAGACATGGTCTTACACTGGCTC-TCATAATGTGGCT
* * * * * *
91933209 AATACATGTCCTAGACAT-TTCTTATACTGGCT-TACAT-CTCGAGGCT
1 GATGCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCT
* ** * *
91933255 GATGCATGTCCCAGACAT-GTCTTATTCTAGCACTCATCTCAATGT--C-
1 GATGCATGTCCTAGACATGGTCTTACACTGGCTCTCA--T-AATGTGGCT
*
91933301 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGTT
1 GATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
*
91933349 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
*
91933396 GATGCATGT-CTCAGACAT-GTCTTACACTAGCTC
1 GATGCATGTCCT-AGACATGGTCTTACACTGGCTC
91933429 ACACAAATGA
Statistics
Matches: 254, Mismatches: 42, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 10 0.04
45 21 0.08
46 55 0.22
47 71 0.28
48 20 0.08
49 35 0.14
50 35 0.14
51 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
Found at i:91933396 original size:141 final size:138
Alignment explanation
Indices: 91933061--91933426 Score: 364
Period size: 141 Copynumber: 2.6 Consensus size: 138
91933051 TGGGTAAATT
* *
91933061 GCCGATGCCATGTCCCAGTCATGGTCTTACACTGGCTATCATCATTGAGGCTGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCAT-AATGAGGCTGATG-CATGTCCC
*
91933126 AGACATGGTCTTACACTAGCTCTCACATAACCGTGCCGATGCCATGTCCCAGACATGGTCTTACA
62 AGACAT-GTCTTACACTAGCACTCACATAA-C-TGCCGATGCCATGTCCCAGACATGGTCTTACA
*
91933191 TTGACACATCTCGTA
124 CTGACACATCTCGTA
* * * * * *
91933206 GCCAATACATGTCCTAGACAT-TTCTTATACTGGCTTACAT-CTCGAGGCTGATGCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTT-CATAAT-GAGGCTGATGCATGTCCCAG
** * *
91933269 ACATGTCTTATTCTAGCACTCATC-TCAA-TGTCGATGCCATGTCCTAGACATGGTCTTACACTG
64 ACATGTCTTACACTAGCACTCA-CAT-AACTGCCGATGCCATGTCCCAGACATGGTCTTACACTG
* * * *
91933332 GCTC-TCATAATGTG
127 ACACATC-T--CGTA
** * *
91933346 GTTGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCTCAGA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCT-TCATAATGAGGCTGATGCATGTCCCAGA
91933411 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
91933427 TCACACAAAT
Statistics
Matches: 182, Mismatches: 29, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
137 2 0.01
138 35 0.19
140 34 0.19
141 66 0.36
142 13 0.07
143 15 0.08
144 12 0.07
145 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (138 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATAATGAGGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCACATAACTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACAC
ATCTCGTA
Found at i:91935597 original size:25 final size:26
Alignment explanation
Indices: 91935547--91935610 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 26
91935537 GCTTACCATT
* * *
91935547 TCAGCTCA-ATAGAGCTTATTGTTCA
1 TCAGCTCAGAAAGAGCTTATCGATCA
91935572 TCAGCTCAGAAAGAGCTTA-CGATCA
1 TCAGCTCAGAAAGAGCTTATCGATCA
*
91935597 T-AGCT-TGAAAGAGC
1 TCAGCTCAGAAAGAGC
91935611 AAATACGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 8 0.24
24 4 0.12
25 13 0.38
26 9 0.26
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
TCAGCTCAGAAAGAGCTTATCGATCA
Found at i:91935760 original size:19 final size:19
Alignment explanation
Indices: 91935736--91935815 Score: 90
Period size: 19 Copynumber: 4.2 Consensus size: 19
91935726 AAAAGCTATG
*
91935736 TGTTATACGGATGAATTAT
1 TGTTATACGGATGAATTAC
* *
91935755 TGTTATAGGGATGAAGTAC
1 TGTTATACGGATGAATTAC
* *
91935774 TGTTTATACGGATGAGTTAT
1 TG-TTATACGGATGAATTAC
*
91935794 TGTTAT-CGAATGAATTAC
1 TGTTATACGGATGAATTAC
91935812 TGTT
1 TGTT
91935816 TATATGATTG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
18 13 0.26
19 22 0.44
20 15 0.30
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (19 bp):
TGTTATACGGATGAATTAC
Found at i:91935816 original size:38 final size:39
Alignment explanation
Indices: 91935738--91935819 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
91935728 AAGCTATGTG
* *
91935738 TTATACGGATGAATTATTGTTATAGGGATGAAGTACTGT
1 TTATACGGATGAATTATTGTTATACGAATGAAGTACTGT
* *
91935777 TTATACGGATGAGTTATTGTTAT-CGAATGAATTACTGT
1 TTATACGGATGAATTATTGTTATACGAATGAAGTACTGT
91935815 TTATA
1 TTATA
91935820 TGATTGAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 17 0.44
39 22 0.56
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.41
Consensus pattern (39 bp):
TTATACGGATGAATTATTGTTATACGAATGAAGTACTGT
Found at i:91941215 original size:39 final size:39
Alignment explanation
Indices: 91941170--91941432 Score: 393
Period size: 39 Copynumber: 6.7 Consensus size: 39
91941160 TGTCTGAGAT
91941170 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
91941209 TTATATCCGGGCTAAATCCCGAAGTCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
91941248 TTATGTCTGAGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
91941287 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
91941326 TTATAT-TCGGGTTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCT-GGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
91941365 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
91941404 TTATACCTGGGCTAAGTCCCGAAGGCATT
1 TTATATCTGGGCTAAGTCCCGAAGGCATT
91941433 TGTGTTGGAA
Statistics
Matches: 201, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 201 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:91949060 original size:40 final size:40
Alignment explanation
Indices: 91949013--91949213 Score: 314
Period size: 40 Copynumber: 5.0 Consensus size: 40
91949003 GATAATTCCA
* *
91949013 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
91949053 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
91949093 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
91949133 GGCTAAGTCCCGAAGACATTTGTGCGAACTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
91949173 GGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
91949213 G
1 G
91949214 TTAAAGCCCG
Statistics
Matches: 149, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 148 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:91957113 original size:40 final size:40
Alignment explanation
Indices: 91957062--91957304 Score: 407
Period size: 40 Copynumber: 6.1 Consensus size: 40
91957052 AGATGATAAT
* *
91957062 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
91957101 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
91957142 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
91957182 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
91957222 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
91957262 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
91957302 TCC
1 TCC
91957305 AGTTAAAGCC
Statistics
Matches: 193, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 192 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:91965439 original size:55 final size:55
Alignment explanation
Indices: 91965308--91965439 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 55
91965298 CGTGGTTAAG
* * * *
91965308 CCTGTCAAATCAACACAGGCGCGCGACAAGCCCGTGTGGAAGAACCGTGGTCGAG
1 CCTGTCAAATTAACACAGGCGTGCGACAAGCCCGTGTGGAAGAACCATGGTCGAA
* * * * * * *
91965363 CTTGCCAAAATAGCACGGGCGTTCGACACA-CCTGTGTGGAAGAACCATGGTCGAA
1 CCTGTCAAATTAACACAGGCGTGCGACA-AGCCCGTGTGGAAGAACCATGGTCGAA
*
91965418 CCTGTTAAATTAACACAGGCGT
1 CCTGTCAAATTAACACAGGCGT
91965440 AAGGCTTACA
Statistics
Matches: 59, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
55 58 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.17
Consensus pattern (55 bp):
CCTGTCAAATTAACACAGGCGTGCGACAAGCCCGTGTGGAAGAACCATGGTCGAA
Found at i:91967195 original size:35 final size:35
Alignment explanation
Indices: 91967149--91967221 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
91967139 CATTTGGTAA
91967149 TTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAAT
1 TTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAAT
91967184 TTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAAT
1 TTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAAT
91967219 TTA
1 TTA
91967222 CTCATCTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.16
Consensus pattern (35 bp):
TTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAAT
Found at i:91968491 original size:68 final size:67
Alignment explanation
Indices: 91968419--91968585 Score: 180
Period size: 67 Copynumber: 2.5 Consensus size: 67
91968409 CATCATGTGT
* * * *
91968419 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
91968481 ATGTAG
62 ATGTAG
* * *
91968487 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
91968552 AG
66 AG
* * *
91968554 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTC
91968586 ATATGGGTGG
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
64 20 0.23
65 7 0.08
66 14 0.16
67 33 0.38
68 13 0.15
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:92023441 original size:49 final size:49
Alignment explanation
Indices: 92023321--92023658 Score: 590
Period size: 49 Copynumber: 6.9 Consensus size: 49
92023311 TCACATTTAT
* * *
92023321 ACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
92023370 AC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
92023417 ACACTTTCACATTCTTCACGTCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92023466 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92023515 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
92023564 ACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92023613 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
92023659 CATCGGCCAT
Statistics
Matches: 274, Mismatches: 13, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 41 0.15
48 2 0.01
49 231 0.84
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:92023573 original size:147 final size:145
Alignment explanation
Indices: 92023321--92023835 Score: 592
Period size: 147 Copynumber: 3.7 Consensus size: 145
92023311 TCACATTTAT
* * *
92023321 ACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACACCTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCA
* * * * *
92023386 CATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACGTCGGCCATTAGGCC
66 CATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCC
92023451 TTATCACATATATAC
131 TTATCACATATATAC
92023466 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-C-TTCACATTCAT
92023531 CACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGG
64 CACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGG
92023596 CCTTATCACATATATAC
129 CCTTATCACATATATAC
* **
92023613 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACATCGGC-CA-T--T--
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCA
* * * * * * * **
92023670 -A--GGCC-TTA-TCACATAT-ATATACACTTTCACA--TTCATCA--CCTCGGC--CA-TTA--
66 CATCGGCCATTAGGC-CTTATCACATATA--TACACACTTTCA-CATTCATC-ACATCAGCCATT
92023720 -GGCCTTATCACATATATAC
126 AGGCCTTATCACATATATAC
*
92023739 ACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-C-TTCACATTCAT
92023804 CACATCGGCCATTAGGCCTTATCACATATATA
64 CACATCGGCCATTAGGCCTTATCACATATATA
92023836 TACCTCATAC
Statistics
Matches: 318, Mismatches: 29, Indels: 52
0.80 0.07 0.13
Matches are distributed among these distances:
126 59 0.19
128 7 0.02
129 2 0.01
130 3 0.01
131 5 0.02
132 12 0.04
133 9 0.03
134 10 0.03
136 1 0.00
137 1 0.00
139 6 0.02
140 7 0.02
141 7 0.02
142 2 0.01
143 1 0.00
144 1 0.00
145 55 0.17
146 1 0.00
147 129 0.41
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (145 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCC
TTATCACATATATAC
Found at i:92023663 original size:28 final size:28
Alignment explanation
Indices: 92023630--92023686 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
92023620 CACATTCATC
92023630 ACATCGGCCATTAGGCCTTATCACATAT
1 ACATCGGCCATTAGGCCTTATCACATAT
92023658 ACATCGGCCATTAGGCCTTATCACATAT
1 ACATCGGCCATTAGGCCTTATCACATAT
92023686 A
1 A
92023687 TATACACTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
ACATCGGCCATTAGGCCTTATCACATAT
Found at i:92023671 original size:175 final size:175
Alignment explanation
Indices: 92023483--92023833 Score: 666
Period size: 175 Copynumber: 2.0 Consensus size: 175
92023473 CACATTCATC
92023483 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
92023548 CTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
66 CTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
92023613 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
131 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
92023658 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92023723 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATAC
66 CTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
92023788 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
131 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
92023833 A
1 A
92023834 TATACCTCAT
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (175 bp):
ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:92023672 original size:77 final size:77
Alignment explanation
Indices: 92023581--92023735 Score: 283
Period size: 77 Copynumber: 2.0 Consensus size: 77
92023571 CACATTCATC
92023581 ACATCAGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 ACATCAGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
92023646 CTTATCACATAT
66 CTTATCACATAT
* * *
92023658 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 ACATCAGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
92023723 CTTATCACATAT
66 CTTATCACATAT
92023735 A
1 A
92023736 TACACACTTT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (77 bp):
ACATCAGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATAT
Found at i:92023677 original size:126 final size:126
Alignment explanation
Indices: 92023532--92023784 Score: 470
Period size: 126 Copynumber: 2.0 Consensus size: 126
92023522 CACATTCATC
92023532 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGC
92023597 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
66 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* * *
92023658 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGC
*
92023723 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
66 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
92023784 A
1 A
92023785 TACACACTTT
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 123 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (126 bp):
ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCAGCCATTAGGC
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:92023716 original size:49 final size:49
Alignment explanation
Indices: 92023658--92023835 Score: 329
Period size: 49 Copynumber: 3.6 Consensus size: 49
92023648 TATCACATAT
*
92023658 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
*
92023707 ACCTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
*
92023756 ACGTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
92023805 ACATCGGCCATTAGGCCTTATCACATATATA
1 ACATCGGCCATTAGGCCTTATCACATATATA
92023836 TACCTCATAC
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 125 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.31
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
Found at i:92030759 original size:40 final size:40
Alignment explanation
Indices: 92030693--92030859 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92030683 AAATTGAATG
* * *
92030693 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92030732 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92030772 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92030812 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92030852 ATATCCGG
1 ATATCCGG
92030860 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92038747 original size:40 final size:40
Alignment explanation
Indices: 92038681--92038847 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92038671 AAATTGAATG
* * *
92038681 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92038720 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92038760 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92038800 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92038840 ATATCCGG
1 ATATCCGG
92038848 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Done.