Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 296 of 425
Found at i:92043538 original size:15 final size:13
Alignment explanation
Indices: 92043509--92043535 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
92043499 GCTCCGCAGG
92043509 GACACGCCCGTGT
1 GACACGCCCGTGT
92043522 GACACGCCCGTGT
1 GACACGCCCGTGT
92043535 G
1 G
92043536 TGATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:92052689 original size:17 final size:18
Alignment explanation
Indices: 92052667--92052700 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
92052657 TCAATTGGGC
92052667 CGTGTGGAC-CACACGGG
1 CGTGTGGACGCACACGGG
*
92052684 CGTGTGGGCGCACACGG
1 CGTGTGGACGCACACGG
92052701 TTGAACCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.29, G:0.44, T:0.12
Consensus pattern (18 bp):
CGTGTGGACGCACACGGG
Found at i:92054595 original size:40 final size:40
Alignment explanation
Indices: 92054501--92054641 Score: 162
Period size: 40 Copynumber: 3.5 Consensus size: 40
92054491 TTCGAATGGT
* * * *
92054501 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTCACTAA
*
92054542 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTCACTAA
* *
92054582 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTA-A
92054623 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
92054642 ACAATCGAGC
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
39 2 0.02
40 58 0.65
41 29 0.33
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTAA
Found at i:92054662 original size:40 final size:40
Alignment explanation
Indices: 92054584--92054667 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
92054574 GTTACTAAAT
* * *
92054584 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
92054624 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
92054664 CCGG
1 CCGG
92054668 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:92062620 original size:40 final size:40
Alignment explanation
Indices: 92062524--92062702 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
92062514 CGAATGGTAT
* * * *
92062524 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
92062565 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
92062605 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
92062645 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
92062685 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
92062703 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
40 93 0.79
41 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:92062665 original size:80 final size:81
Alignment explanation
Indices: 92062524--92062702 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
92062514 CGAATGGTAT
* *
92062524 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
92062589 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
92062605 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
92062668 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
92062685 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
92062703 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.69
81 26 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:92062715 original size:80 final size:80
Alignment explanation
Indices: 92062558--92062742 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
92062548 GTGCTAAGTG
* * * *
92062558 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* * * *
92062623 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTT
* * *
92062638 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
*
92062702 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTT
* * * *
92062718 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
92062743 TACGTGATTC
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
79 8 0.09
80 79 0.91
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTT
Found at i:92062723 original size:40 final size:40
Alignment explanation
Indices: 92062645--92062728 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
92062635 GTTACTAAAT
* * *
92062645 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
92062685 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
92062725 CCGG
1 CCGG
92062729 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:92067725 original size:41 final size:41
Alignment explanation
Indices: 92067668--92067778 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 41
92067658 TTCGAATGGT
* *
92067668 ATCCGGGCT-AAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTCAATTCCCGAAGGCATTTGTGC-AAGTGACTAA
* *
92067709 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTCAATTCCCGAAGGCATTTGTGCAAGTGACTAA
*
92067749 ATCCGGGCTTAATTCCCGAAGGCA-TTGTGC
1 ATCCGGGCTCAATTCCCGAAGGCATTTGTGC
92067779 GAATCACTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
40 22 0.35
41 41 0.65
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (41 bp):
ATCCGGGCTCAATTCCCGAAGGCATTTGTGCAAGTGACTAA
Found at i:92067777 original size:40 final size:40
Alignment explanation
Indices: 92067668--92067797 Score: 140
Period size: 41 Copynumber: 3.2 Consensus size: 40
92067658 TTCGAATGGT
* * * *
92067668 ATCCGGGC-TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTTAATTCCCGAAGGC-ATTGTGC-GAGTCACTAA
* *
92067709 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTTAATTCCCGAAGGCA-TTGTGCGAGTCACTAA
*
92067749 ATCCGGGCTTAATTCCCGAAGGCATTGTGCGAATCACTATA
1 ATCCGGGCTTAATTCCCGAAGGCATTGTGCGAGTCACTA-A
92067790 A-CCGGGCT
1 ATCCGGGCT
92067798 ATGTCCCGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
40 35 0.45
41 42 0.55
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTTAATTCCCGAAGGCATTGTGCGAGTCACTAA
Found at i:92067821 original size:80 final size:81
Alignment explanation
Indices: 92067668--92067822 Score: 174
Period size: 80 Copynumber: 1.9 Consensus size: 81
92067658 TTCGAATGGT
* * * * *
92067668 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCTATTGTGCGAAGTCACTAAATCCGGGTCAATTCCCGAAGACAA
* *
92067733 TTGTGCGAGTTACTAA
66 TCGAGCGAGTTACTAA
* *
92067749 ATCCGGGCTTAATTCCCGAAGGC-ATTGTGCGAA-TCACTATAA-CCGGG-CTATGTCCCGAAGA
1 ATCCGGGC-TAAGTCCCGAAGGCTATTGTGCGAAGTCACTA-AATCCGGGTCAAT-TCCCGAAGA
92067810 CAATCGAGCGAGT
63 CAATCGAGCGAGT
92067823 CGCTATATCC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
79 3 0.05
80 28 0.45
81 18 0.29
82 13 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (81 bp):
ATCCGGGCTAAGTCCCGAAGGCTATTGTGCGAAGTCACTAAATCCGGGTCAATTCCCGAAGACAA
TCGAGCGAGTTACTAA
Found at i:92075778 original size:40 final size:40
Alignment explanation
Indices: 92075678--92075872 Score: 171
Period size: 40 Copynumber: 4.8 Consensus size: 40
92075668 TTCGAATGGT
** * * *
92075678 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACAAA
* * *
92075719 ATCCGGG-TCAATTCTCGAAGGCATTTGTGCGAGTTACCAAA
1 ATCCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CAAA
* *
92075760 AT-CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACAAA
* * * *
92075799 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCATA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CAAA
* * * *
92075840 A-CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
92075873 CGCCATATCC
Statistics
Matches: 127, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
39 5 0.04
40 88 0.69
41 34 0.27
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACAAA
Found at i:92075820 original size:80 final size:80
Alignment explanation
Indices: 92075680--92075872 Score: 226
Period size: 80 Copynumber: 2.4 Consensus size: 80
92075670 CGAATGGTAT
** * * *
92075680 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCTCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
92075745 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * *
92075761 TCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
*
92075825 GTGCGAATCACCATAA
65 GTGCGAATCACCAAAA
* * * *
92075841 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
92075873 CGCCATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 69 0.73
81 24 0.26
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:92075879 original size:40 final size:40
Alignment explanation
Indices: 92075801--92075884 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
92075791 GTTACTAAAT
* * *
92075801 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACCATAA
* * *
92075841 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCCATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACCATAA
92075881 CCGG
1 CCGG
92075885 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACCATAA
Found at i:92075883 original size:80 final size:80
Alignment explanation
Indices: 92075717--92075898 Score: 188
Period size: 80 Copynumber: 2.3 Consensus size: 80
92075707 CTAAGTGACT
* * * * * * *
92075717 AAATCCGGGTCAATTCTCGAAGGCATTTGTGCGAGTTACCAAAATCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACA
* * * *
92075782 ATTGTGCGAGTTACT
66 ATCGAGCGAGTCACC
* *
92075797 AAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACCATAACCGGGCTATGTCCCGAAGAC
1 AAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGAC
*
92075861 AATCGAGCGAGTCGCC
65 AATCGAGCGAGTCACC
* * *
92075877 ATATCCGGTTAAATT-CCGAAGG
1 AAATCCGGGTCAATTCCCGAAGG
92075899 TACGTGATTC
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
79 8 0.10
80 75 0.90
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (80 bp):
AAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACA
ATCGAGCGAGTCACC
Found at i:92080346 original size:12 final size:12
Alignment explanation
Indices: 92080329--92080353 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92080319 GGAACAAAAT
92080329 AAAATAAAGAAG
1 AAAATAAAGAAG
92080341 AAAATAAAGAAG
1 AAAATAAAGAAG
92080353 A
1 A
92080354 TAGATGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAATAAAGAAG
Found at i:92085994 original size:40 final size:40
Alignment explanation
Indices: 92085950--92086059 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
92085940 TTCACAATTT
* * *
92085950 GCACAAATGCCTTTGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
92085990 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
92086030 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
92086060 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:92089644 original size:39 final size:40
Alignment explanation
Indices: 92089570--92089650 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
92089560 CATAGAAAAG
* *
92089570 TCAATCTAGAAAAATAAAGGAAGAACTACATGAAGTTAAT
1 TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
**
92089610 TCAATCTAGAAAAATAAA-AAAGAACTGTAGGAAGTTAAT
1 TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
92089649 TC
1 TC
92089651 CACATGCCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 19 0.51
40 18 0.49
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (40 bp):
TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
Found at i:92091878 original size:27 final size:27
Alignment explanation
Indices: 92091814--92091909 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
92091804 TTATAGTGAT
** *
92091814 AATCATGAAAGAAAAGCCTTTGTGGCAA
1 AATCATGAAAGAAAATTCTTTGTGG-AG
* *
92091842 AAT-ATAAAAGAAAATTCTTTGTGGTG
1 AATCATGAAAGAAAATTCTTTGTGGAG
*
92091868 AATCATGAAAG-AAATAT-TTTGTGGCG
1 AATCATGAAAGAAAAT-TCTTTGTGGAG
* *
92091894 AAACATGAAAAAAAAT
1 AATCATGAAAGAAAAT
92091910 CGTTGTAACA
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
26 24 0.43
27 29 0.52
28 3 0.05
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (27 bp):
AATCATGAAAGAAAATTCTTTGTGGAG
Found at i:92091915 original size:26 final size:26
Alignment explanation
Indices: 92091817--92091915 Score: 76
Period size: 26 Copynumber: 3.7 Consensus size: 26
92091807 TAGTGATAAT
** *
92091817 CATGAAAGAAAAGCCTTTGTGGCAAAA
1 CATGAAA-AAAAATCTTTGTGGCGAAA
* * *
92091844 TAT-AAAAGAAAATTCTTTGTGGTGAAT
1 CATGAAAA-AAAA-TCTTTGTGGCGAAA
*
92091871 CATGAAAGAAATAT-TTTGTGGCGAAA
1 CATGAAA-AAAAATCTTTGTGGCGAAA
*
92091897 CATGAAAAAAAATCGTTGT
1 CATGAAAAAAAATCTTTGT
92091916 AACAAAATAT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
25 6 0.11
26 27 0.49
27 15 0.27
28 6 0.11
29 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.27
Consensus pattern (26 bp):
CATGAAAAAAAATCTTTGTGGCGAAA
Found at i:92091988 original size:27 final size:27
Alignment explanation
Indices: 92091958--92092015 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
92091948 ATTATGAAGG
92091958 GATAGCCATTGTGGCAAACCCTACAAT
1 GATAGCCATTGTGGCAAACCCTACAAT
** *
92091985 GATAGCTTTTGTGGCAAATCCTACAAT
1 GATAGCCATTGTGGCAAACCCTACAAT
92092012 GATA
1 GATA
92092016 ACTTTTATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (27 bp):
GATAGCCATTGTGGCAAACCCTACAAT
Found at i:92092020 original size:27 final size:27
Alignment explanation
Indices: 92091966--92092026 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
92091956 GGGATAGCCA
*
92091966 TTGTGGCAAACCCTACAATGATAGCTT
1 TTGTGGCAAACCCTACAATGATAACTT
*
92091993 TTGTGGCAAATCCTACAATGATAACTT
1 TTGTGGCAAACCCTACAATGATAACTT
*
92092020 TTATGGC
1 TTGTGGC
92092027 GATAATTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (27 bp):
TTGTGGCAAACCCTACAATGATAACTT
Found at i:92095360 original size:50 final size:50
Alignment explanation
Indices: 92095285--92095532 Score: 302
Period size: 50 Copynumber: 4.9 Consensus size: 50
92095275 TAAGACAGTT
* *
92095285 TTAGGTCACGTGTGTAGTACCAAGTGCAGGCTGCTACGTGTTA-CAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATTG
* * * * * *
92095335 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
92095385 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTTTCC-GATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATTG
*
92095436 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
92095486 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
92095533 GAGCTTTAGT
Statistics
Matches: 169, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 5 0.03
50 122 0.72
51 39 0.23
52 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:92095417 original size:101 final size:100
Alignment explanation
Indices: 92095239--92095521 Score: 316
Period size: 101 Copynumber: 2.8 Consensus size: 100
92095229 GTTTTGAGAA
* * *** * *
92095239 CACATGTGTAGTACTATGTGCAAGCTACT-CTGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTAC-GCGTACCAGATAG--TTAGATCACGTGTGTAGT
* * *
92095303 ACCAAGTGCAGGCTGCTACGTGTTACAGATTGTTAGGT
63 ACTAAGTGCAGGCTACTACGTGTTACAGATGGTTAGGT
* * * * *
92095341 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAG-TTAGATCACGTGTGTAGTAC
* * *
92095406 TAAGTGCAGGCTACTATGTGTTTCCGATGGTTAGGT
65 TAAGTGCAGGCTACTACGTGTTACAGATGGTTAGGT
* * * * *
92095442 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAGTTAGATCACGTGTGTAGTACT
92095507 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
92095522 TGCGTACCAG
Statistics
Matches: 151, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
100 33 0.22
101 85 0.56
102 33 0.22
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAGTTAGATCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTTACAGATGGTTAGGT
Found at i:92095519 original size:151 final size:153
Alignment explanation
Indices: 92095243--92095538 Score: 445
Period size: 151 Copynumber: 1.9 Consensus size: 153
92095233 TGAGAACACA
* * *
92095243 TGTGTAGTACTATGTGCAAGCTACTCTGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACCAA
1 TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
* * *
92095308 GTGCAGGCTGCTACGTGTTACAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
66 GTGCAAGCTACTACGTGTTACAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
* *
92095373 CGTACCCGATAGCTTCGATCACG
131 CGTACCAGAGAGCTTCGATCACG
* ** * *
92095396 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTCCGA-TG-GTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
92095459 GTGCAAGCTACTACGTG-TACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTAT
66 GTGCAAGCTACTACGTGTTA-CAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTAT
92095523 GCGTACCAGAGAGCTT
130 GCGTACCAGAGAGCTT
92095539 TAGTTACAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 2 0.02
151 94 0.73
152 1 0.01
153 32 0.25
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (153 bp):
TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
GTGCAAGCTACTACGTGTTACAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
CGTACCAGAGAGCTTCGATCACG
Found at i:92098711 original size:45 final size:47
Alignment explanation
Indices: 92098642--92098730 Score: 121
Period size: 45 Copynumber: 1.9 Consensus size: 47
92098632 TCAAAATATA
*
92098642 TTTTACATCGATTTTTTAATGACATTATAGGTATGTCAT-ATCTCAT
1 TTTTACATCAATTTTTTAATGACATTATAGGTATGTCATGATCTCAT
* *
92098688 TTTTACAT-AATTTTTT-ATGGACATTATGGGTGTGTCATGATCT
1 TTTTACATCAATTTTTTAAT-GACATTATAGGTATGTCATGATCT
92098731 TTTTATATCA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 2 0.05
45 24 0.63
46 12 0.32
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (47 bp):
TTTTACATCAATTTTTTAATGACATTATAGGTATGTCATGATCTCAT
Found at i:92102833 original size:19 final size:17
Alignment explanation
Indices: 92102809--92102866 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 17
92102799 TCCAAAATCA
92102809 AAATTTAAGCAAAAACATT
1 AAATTTAA-CAAAAA-ATT
92102828 AAATTT---AAAAAA-T
1 AAATTTAACAAAAAATT
92102841 AAATTTAAACAAAAATATT
1 AAATTT-AACAAAAA-ATT
92102860 AAATTTA
1 AAATTTA
92102867 TTTAAAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
13 7 0.21
14 1 0.03
15 5 0.15
17 5 0.15
18 2 0.06
19 13 0.39
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (17 bp):
AAATTTAACAAAAAATT
Found at i:92102973 original size:13 final size:13
Alignment explanation
Indices: 92102955--92102979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92102945 ATATAATATA
92102955 ATATATTATTTTT
1 ATATATTATTTTT
92102968 ATATATTATTTT
1 ATATATTATTTT
92102980 ATTTAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATATTATTTTT
Found at i:92124000 original size:26 final size:27
Alignment explanation
Indices: 92123953--92124005 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
92123943 GTTGGTATTA
*
92123953 AATAATAAAATTATTATTAAATATCAAAT
1 AATAATAAAATTA-TATGAAAT-TCAAAT
92123982 AATAATAAAA-TA-ATGAAATTCAAA
1 AATAATAAAATTATATGAAATTCAAA
92124006 CAATGAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
28 2 0.09
29 10 0.43
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (27 bp):
AATAATAAAATTATATGAAATTCAAAT
Found at i:92126453 original size:50 final size:50
Alignment explanation
Indices: 92126349--92126536 Score: 225
Period size: 50 Copynumber: 3.8 Consensus size: 50
92126339 CAAGTACCCT
* * * * *
92126349 GCCACAAAGGCTTTACA-ATAACTCGCCACAAAGGTTTCCCAAATAGATC
1 GCCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATC
* * * * *
92126398 GCCACAAAGGCTTTACAGGGGACTTGCCACAGAGGCTTCCCAAATAAATT
1 GCCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATC
* * * * *
92126448 ACCACAAAGGCTTTATAGGAGACTCGCCATAAAAGCTTTCCAAATAAATC
1 GCCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATC
*
92126498 GCCACAAAGGCTTTACAGGTGACTCGCCACAGAAGCTTC
1 GCCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTC
92126537 ACATAAACTT
Statistics
Matches: 115, Mismatches: 23, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
49 17 0.15
50 98 0.85
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (50 bp):
GCCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATC
Found at i:92126510 original size:100 final size:99
Alignment explanation
Indices: 92126350--92126536 Score: 268
Period size: 100 Copynumber: 1.9 Consensus size: 99
92126340 AAGTACCCTG
* * * *
92126350 CCACAAAGGCTTTACAATAACTCGCCACAAAGGTTTCCCAAATAGATCGCCACAAAGGCTTTACA
1 CCACAAAGGCTTTACAAGAACTCGCCAAAAAGCTTTCCCAAATAAATCGCCACAAAGGCTTTACA
* *
92126415 GGGGACTTGCCACAGAGGCTTCCCAAATAAATTA
66 GGGGACTCGCCACAGAAGCTTCCCAAATAAATTA
* *
92126449 CCACAAAGGCTTTATAGGAGACTCGCCATAAAAGCTTT-CCAAATAAATCGCCACAAAGGCTTTA
1 CCACAAAGGCTTTACAAGA-ACTCGCCA-AAAAGCTTTCCCAAATAAATCGCCACAAAGGCTTTA
*
92126513 CAGGTGACTCGCCACAGAAGCTTC
64 CAGGGGACTCGCCACAGAAGCTTC
92126537 ACATAAACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
99 16 0.21
100 54 0.70
101 7 0.09
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (99 bp):
CCACAAAGGCTTTACAAGAACTCGCCAAAAAGCTTTCCCAAATAAATCGCCACAAAGGCTTTACA
GGGGACTCGCCACAGAAGCTTCCCAAATAAATTA
Found at i:92126524 original size:25 final size:25
Alignment explanation
Indices: 92126349--92126528 Score: 107
Period size: 25 Copynumber: 7.2 Consensus size: 25
92126339 CAAGTACCCT
*
92126349 GCCACAAAGGCTTTAC-AATAACTC
1 GCCACAAAGGCTTTACAAATGACTC
*
92126373 GCCACAAAGG-TTTCCCAAATAGA-TC
1 GCCACAAAGGCTTT-ACAAAT-GACTC
*** *
92126398 GCCACAAAGGCTTTACAGGGGACTT
1 GCCACAAAGGCTTTACAAATGACTC
* ** * * *
92126423 GCCACAGAGGCTTCCCAAATAAATT
1 GCCACAAAGGCTTTACAAATGACTC
* * *
92126448 ACCACAAAGGCTTTATAGGA-GACTC
1 GCCACAAAGGCTTTACA-AATGACTC
* * * * *
92126473 GCCATAAAAGCTTTCCAAATAAATC
1 GCCACAAAGGCTTTACAAATGACTC
**
92126498 GCCACAAAGGCTTTACAGGTGACTC
1 GCCACAAAGGCTTTACAAATGACTC
92126523 GCCACA
1 GCCACA
92126529 GAAGCTTCAC
Statistics
Matches: 110, Mismatches: 39, Indels: 13
0.68 0.24 0.08
Matches are distributed among these distances:
23 3 0.03
24 14 0.13
25 88 0.80
26 5 0.05
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (25 bp):
GCCACAAAGGCTTTACAAATGACTC
Found at i:92126730 original size:24 final size:24
Alignment explanation
Indices: 92126683--92126730 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
92126673 CTGGATTTTT
* * * *
92126683 CTCGTGTTTGTTGTCCCGATAGAC
1 CTCGTGTTTATAGTCCCAACAGAC
92126707 CTCGTGTTTATAGTCCCAACAGAC
1 CTCGTGTTTATAGTCCCAACAGAC
92126731 TACATTTCGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (24 bp):
CTCGTGTTTATAGTCCCAACAGAC
Found at i:92138932 original size:58 final size:57
Alignment explanation
Indices: 92138860--92138979 Score: 231
Period size: 58 Copynumber: 2.1 Consensus size: 57
92138850 TTTAAAGAGA
92138860 AATAATATTTATCTTAATGTTAAATATATATATCATATAATAAATATATATATCATAT
1 AATAATATTTATCTTAATGTTAAATATATATATCATATAAT-AATATATATATCATAT
92138918 AATAATATTTATCTTAATGTTAAATATATATATCATATAATAATATATATATCATAT
1 AATAATATTTATCTTAATGTTAAATATATATATCATATAATAATATATATATCATAT
92138975 AATAA
1 AATAA
92138980 CTTACATAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 21 0.34
58 41 0.66
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (57 bp):
AATAATATTTATCTTAATGTTAAATATATATATCATATAATAATATATATATCATAT
Found at i:92138997 original size:27 final size:27
Alignment explanation
Indices: 92138957--92139062 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
92138947 ATATCATATA
92138957 ATAATATATATATCATATAATAACTTAC
1 ATAA-ATATATATCATATAATAACTTAC
*
92138985 ATAAATATATATCATATCATAACTTAC
1 ATAAATATATATCATATAATAACTTAC
* * *
92139012 ACAACT-TATATACCT-TACATAA--TAC
1 ATAAATATATAT-CATATA-ATAACTTAC
*
92139037 ATAAATATATATTATATAATAACTTA
1 ATAAATATATATCATATAATAACTTA
92139063 TGTAACTTAC
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
25 12 0.19
26 13 0.21
27 34 0.54
28 4 0.06
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (27 bp):
ATAAATATATATCATATAATAACTTAC
Found at i:92139045 original size:52 final size:46
Alignment explanation
Indices: 92138982--92139243 Score: 254
Period size: 43 Copynumber: 5.6 Consensus size: 46
92138972 TATAATAACT
92138982 TACATAAATATATATCATATCATAACTTACACAACTTATATACCTTACATAA
1 TACATAAATATATATCATATCATAACTT----AACTTATA-A-CTTACATAA
* * * *
92139034 TACATAAATATATATTATATAATAACTTATGTAACTTACAAATCTTACAGAA
1 TACATAAATATATATCATATCATAAC---T-TAACTTA-TAA-CTTACATAA
* * * *
92139086 TACATAAGTATATATCATTTAATAACTT-AC--ATAACTCACATAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
* *
92139129 TACATAAATATATATCATATAATAACTTAA---ATAACTTACAGAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
*
92139172 TACATAAATATATATCATAGCATAACTT-AC--ATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
92139215 TACATAAATATATATCATATCATAACTTA
1 TACATAAATATATATCATATCATAACTTA
92139244 CATACCTTAC
Statistics
Matches: 183, Mismatches: 19, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
42 1 0.01
43 109 0.60
44 3 0.02
45 1 0.01
47 2 0.01
48 1 0.01
49 1 0.01
52 62 0.34
53 1 0.01
55 1 0.01
56 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (46 bp):
TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
Found at i:92139054 original size:86 final size:85
Alignment explanation
Indices: 92138974--92139298 Score: 312
Period size: 86 Copynumber: 3.6 Consensus size: 85
92138964 ATATATCATA
* * * *
92138974 TAATAACTTACATAAATATATATCATATCATAACTTACACAACTTATATACCTTACATAATACAT
1 TAATAACTTACA-AAATACATATCATAT-ATAACTTACATAACTTACATAACTTACATAATACAT
*
92139039 AAATATATATTATATAATAACT
64 AAATATATATCATATAATAACT
* * * *
92139061 TATGTAACTTACAAATCTTACAGAATACATAAGTATATATCATTTA-ATAACTTACATAACTCAC
1 TA-ATAACTTACAAA--ATACA-TAT-CAT-A-TATA-A-C--TTACATAACTTACATAACTTAC
92139125 ATAATACATAAATATATATCATATAATAACT
55 ATAATACATAAATATATATCATATAATAACT
* * * *
92139156 TAAATAACTTACAGAATACATA-AATATATATCATAGCATAACTTACATAACTTACATAATACAT
1 T-AATAACTTACAAAATACATATCATATATAACTTA-CATAACTTACATAACTTACATAATACAT
*
92139220 AAATATATATCATATCATAACT
64 AAATATATATCATATAATAACT
* ** *
92139242 TACATACCTTACATAAATGTATATCATATCATAACTTACATAACTTACAAAACTTAC
1 TA-ATAACTTACA-AAATACATATCATAT-ATAACTTACATAACTTACATAACTTAC
92139299 TTAACTTACG
Statistics
Matches: 194, Mismatches: 26, Indels: 35
0.76 0.10 0.14
Matches are distributed among these distances:
84 2 0.01
85 1 0.01
86 58 0.30
87 10 0.05
88 35 0.18
89 10 0.05
90 4 0.02
91 3 0.02
92 5 0.03
93 6 0.03
94 1 0.01
95 55 0.28
96 4 0.02
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (85 bp):
TAATAACTTACAAAATACATATCATATATAACTTACATAACTTACATAACTTACATAATACATAA
ATATATATCATATAATAACT
Found at i:92139072 original size:43 final size:43
Alignment explanation
Indices: 92139014--92139290 Score: 239
Period size: 43 Copynumber: 6.4 Consensus size: 43
92139004 TAACTTACAC
* * *
92139014 AACTTATATACCTTACATAATACATAAATATATATTATATAAT
1 AACTTACATAACTTACATAATACATAAATATATATCATATAAT
** * * *
92139057 AACTTATGTAACTTACA-AATCTTACAGAATACATAAGTAT-ATATCATTT
1 AACTTACATAACTTACATAA---TACATAA-ATAT-A-TATCATAT-A-AT
* *
92139106 AATAACTTACATAACTCACATAATACATAAATATATATCATATAAT
1 -A-AC-TTACATAACTTACATAATACATAAATATATATCATATAAT
* * **
92139152 AACTTAAATAACTTACAGAATACATAAATATATATCATAGCAT
1 AACTTACATAACTTACATAATACATAAATATATATCATATAAT
*
92139195 AACTTACATAACTTACATAATACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAATACATAAATATATATCATATAAT
* *
92139238 AACTTACAT-AC---C-T--TACATAAATGTATATCATATCAT
1 AACTTACATAACTTACATAATACATAAATATATATCATATAAT
92139274 AACTTACATAACTTACA
1 AACTTACATAACTTACA
92139291 AAACTTACTT
Statistics
Matches: 194, Mismatches: 22, Indels: 38
0.76 0.09 0.15
Matches are distributed among these distances:
36 31 0.16
37 2 0.01
38 1 0.01
39 1 0.01
40 1 0.01
42 4 0.02
43 99 0.51
44 1 0.01
45 7 0.04
46 4 0.02
47 9 0.05
48 9 0.05
49 4 0.02
50 7 0.04
51 1 0.01
52 11 0.06
53 2 0.01
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.35
Consensus pattern (43 bp):
AACTTACATAACTTACATAATACATAAATATATATCATATAAT
Found at i:92139121 original size:9 final size:9
Alignment explanation
Indices: 92139107--92139307 Score: 84
Period size: 9 Copynumber: 23.0 Consensus size: 9
92139097 ATATCATTTA
92139107 ATAACTTAC
1 ATAACTTAC
*
92139116 ATAACTCAC
1 ATAACTTAC
92139125 ATAA--TAC
1 ATAACTTAC
* *
92139132 ATAA-ATAT
1 ATAACTTAC
*
92139140 ATATCATATA-
1 ATAAC-T-TAC
*
92139150 ATAACTTAA
1 ATAACTTAC
92139159 ATAACTTAC
1 ATAACTTAC
*
92139168 AGAA--TAC
1 ATAACTTAC
* *
92139175 ATAA-ATAT
1 ATAACTTAC
* *
92139183 ATATCATAGC
1 ATAACTTA-C
92139193 ATAACTTAC
1 ATAACTTAC
92139202 ATAACTTAC
1 ATAACTTAC
92139211 ATAA--TAC
1 ATAACTTAC
* *
92139218 ATAA-ATAT
1 ATAACTTAC
* *
92139226 ATATCATATC
1 ATAACTTA-C
92139236 ATAACTTAC
1 ATAACTTAC
*
92139245 ATACCTTAC
1 ATAACTTAC
*
92139254 ATAAATGT--
1 ATAACT-TAC
* *
92139262 ATATCATATC
1 ATAACTTA-C
92139272 ATAACTTAC
1 ATAACTTAC
92139281 ATAACTTAC
1 ATAACTTAC
*
92139290 AAAACTTAC
1 ATAACTTAC
*
92139299 TTAACTTAC
1 ATAACTTAC
92139308 GTAATACATA
Statistics
Matches: 147, Mismatches: 30, Indels: 30
0.71 0.14 0.14
Matches are distributed among these distances:
7 20 0.14
8 20 0.14
9 82 0.56
10 23 0.16
11 2 0.01
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:92139212 original size:36 final size:36
Alignment explanation
Indices: 92139159--92139290 Score: 151
Period size: 36 Copynumber: 3.5 Consensus size: 36
92139149 AATAACTTAA
* *
92139159 ATAACTTACAGAA--TACATAAATATATATCATAGC
1 ATAACTTACATAACTTACATAAATATATATCATATC
92139193 ATAACTTACATAACTTACATAATACATAAATATATATCATATC
1 ATAACTTACAT-A---AC-T--TACATAAATATATATCATATC
* *
92139236 ATAACTTACATACCTTACATAAATGTATATCATATC
1 ATAACTTACATAACTTACATAAATATATATCATATC
92139272 ATAACTTACATAACTTACA
1 ATAACTTACATAACTTACA
92139291 AAACTTACTT
Statistics
Matches: 84, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
34 10 0.12
35 1 0.01
36 38 0.45
38 2 0.02
39 1 0.01
42 1 0.01
43 31 0.37
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.33
Consensus pattern (36 bp):
ATAACTTACATAACTTACATAAATATATATCATATC
Found at i:92142762 original size:26 final size:26
Alignment explanation
Indices: 92142731--92142838 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
92142721 TGAAATGCCC
*
92142731 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
92142757 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
92142783 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
92142809 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92142835 ATCA
1 ATCA
92142839 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:92144138 original size:12 final size:12
Alignment explanation
Indices: 92144121--92144146 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92144111 AAGATCGAGG
92144121 GATGAATCTGAT
1 GATGAATCTGAT
92144133 GATGAATCTGAT
1 GATGAATCTGAT
92144145 GA
1 GA
92144147 AGAGGATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:92147712 original size:16 final size:16
Alignment explanation
Indices: 92147691--92147722 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92147681 TAGTAAAAAT
92147691 AAAAATAACATAATAA
1 AAAAATAACATAATAA
*
92147707 AAAAATAAGATAATAA
1 AAAAATAACATAATAA
92147723 TAATAGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAATAACATAATAA
Found at i:92147722 original size:3 final size:3
Alignment explanation
Indices: 92147649--92147745 Score: 58
Period size: 3 Copynumber: 33.7 Consensus size: 3
92147639 GATAATATGC
* * * * * *
92147649 TAA TAA T-A TAA TAG TAA TGA TAA TAG TAA TAA TAG TAA AAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
92147696 TAA -CA TAA TAA -AA AAA TAA -GA TAA TAA TAA TAG CAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92147741 TAA TA
1 TAA TA
92147746 GTGATATTAG
Statistics
Matches: 67, Mismatches: 23, Indels: 8
0.68 0.23 0.08
Matches are distributed among these distances:
2 6 0.09
3 61 0.91
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:92149785 original size:42 final size:42
Alignment explanation
Indices: 92149727--92149813 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
92149717 AGACACGTGA
*
92149727 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGTTGTAG
1 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
* *
92149769 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGG
1 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
92149811 CTT
1 CTT
92149814 TTAGCTGCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
Found at i:92150406 original size:43 final size:44
Alignment explanation
Indices: 92150338--92150435 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 44
92150328 TACATTTAGC
* * *
92150338 CTGCTCCACTGCGACTTCAAGGAGATGAGACTTGTAACTTCATT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
* * *
92150382 CTGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTCAAT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
*
92150425 CTGCTTCACTG
1 CTGCTCCACTG
92150436 AGGCTTCAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 35 0.74
44 12 0.26
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
Found at i:92162540 original size:16 final size:16
Alignment explanation
Indices: 92162519--92162550 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92162509 TAGTAAAAAT
92162519 AAAAATAACATAATAA
1 AAAAATAACATAATAA
*
92162535 AAAAATAAGATAATAA
1 AAAAATAACATAATAA
92162551 TAATAGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAATAACATAATAA
Found at i:92162550 original size:3 final size:3
Alignment explanation
Indices: 92162477--92162574 Score: 55
Period size: 3 Copynumber: 34.7 Consensus size: 3
92162467 GATAATATGC
* * * * * *
92162477 TAA TAA T-A TAA TAG TAA TGA TAA TAG TAA TAA TAG TAA AAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
92162524 TAA -CA TAA TAA -AA AAA TAA -GA TAA TAA TAA TAG CAA TAA -AA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92162567 TAA TAA TA
1 TAA TAA TA
92162575 GTGATATTAG
Statistics
Matches: 69, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
2 10 0.14
3 59 0.86
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:92163247 original size:26 final size:26
Alignment explanation
Indices: 92163217--92163344 Score: 220
Period size: 26 Copynumber: 4.9 Consensus size: 26
92163207 ATTAATAAAA
* *
92163217 GGTTAGGTAAATGTTCCATGATAATA
1 GGTTAGGTAAATGTTTCATGATAATG
* *
92163243 GGTTAGGTAAATGTTCCATGACAATG
1 GGTTAGGTAAATGTTTCATGATAATG
92163269 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
92163295 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
92163321 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTTCATGATAA
92163345 GAATTTCATG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 98 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
GGTTAGGTAAATGTTTCATGATAATG
Found at i:92169042 original size:51 final size:51
Alignment explanation
Indices: 92168987--92169094 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
92168977 TGATACAAAT
92168987 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
* * * *
92169038 TGATAATGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
92169089 TGATAA
1 TGATAA
92169095 GAATTTCATG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (51 bp):
TGATAAAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:92169054 original size:25 final size:26
Alignment explanation
Indices: 92168987--92169094 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
92168977 TGATACAAAT
92168987 TGATAA-AGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
92169012 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
92169038 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
92169063 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
92169089 TGATAA
1 TGATAA
92169095 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 30 0.38
26 50 0.62
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:92170602 original size:26 final size:26
Alignment explanation
Indices: 92170573--92170625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
92170563 TTTACAGTTT
92170573 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
92170599 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
92170625 T
1 T
92170626 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:92172085 original size:3 final size:3
Alignment explanation
Indices: 92172077--92172130 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
92172067 ACAAATACAT
92172077 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92172125 TAA TAA
1 TAA TAA
92172131 ACTAATTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:92174112 original size:13 final size:14
Alignment explanation
Indices: 92174096--92174124 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
92174086 TTTTAAATAT
92174096 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
92174109 TTATAATGGTTTAA
1 TTATAATGGTTTAA
92174123 TT
1 TT
92174125 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:92174514 original size:21 final size:21
Alignment explanation
Indices: 92174488--92174527 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
92174478 AAATTGCTCA
*
92174488 ACTTAAAGCGGAGGCAGCATC
1 ACTTAAAGAGGAGGCAGCATC
92174509 ACTTAAAGAGGAGGCAGCA
1 ACTTAAAGAGGAGGCAGCA
92174528 GCGAGGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.30, T:0.12
Consensus pattern (21 bp):
ACTTAAAGAGGAGGCAGCATC
Found at i:92174805 original size:47 final size:47
Alignment explanation
Indices: 92174730--92174823 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
92174720 CGTTGAATTT
* *
92174730 TTGAAGTATCATTTAGATTTGTTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
*
92174777 TTGAAGTATCATTTAGGTTTGCTATTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
92174824 AGGAAGGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.19, C:0.05, G:0.26, T:0.50
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
Found at i:92174854 original size:22 final size:22
Alignment explanation
Indices: 92174835--92174880 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
92174825 GGAAGGATTG
92174835 TATATGAATGGAATTGGGATAT
1 TATATGAATGGAATTGGGATAT
92174857 TATATGAATGGAATTGGGATAT
1 TATATGAATGGAATTGGGATAT
92174879 TA
1 TA
92174881 GAAATCTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (22 bp):
TATATGAATGGAATTGGGATAT
Found at i:92175022 original size:40 final size:41
Alignment explanation
Indices: 92174958--92175079 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 41
92174948 GTTTGAGATA
* *
92174958 AAAGCGCCGCT-AAAGATCACGTTCTTTAGCGGC-TTTTTTG
1 AAAGCGCCACTAAAAG-TCAAGTTCTTTAGCGGCATTTTTTG
* *
92174998 AAAGTGCCACTAAAAGTCAAGTTCTTTAGCGGCGTTTTTCTG
1 AAAGCGCCACTAAAAGTCAAGTTCTTTAGCGGCATTTTT-TG
*** * *
92175040 AAAGCGTTGCTAAAAGTCATGTTCTTTAGCGACATTTTTT
1 AAAGCGCCACTAAAAGTCAAGTTCTTTAGCGGCATTTTTT
92175080 TTTTTACATG
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 25 0.36
41 10 0.14
42 34 0.49
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (41 bp):
AAAGCGCCACTAAAAGTCAAGTTCTTTAGCGGCATTTTTTG
Found at i:92181486 original size:2 final size:2
Alignment explanation
Indices: 92181481--92181518 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
92181471 AATAAATCTG
92181481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92181519 CTAAAAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92187708 original size:14 final size:15
Alignment explanation
Indices: 92187689--92187727 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
92187679 CCAGAAAAGT
92187689 AAATCA-TTTTCGAA
1 AAATCATTTTTCGAA
92187703 AAATCATTTTTCG-A
1 AAATCATTTTTCGAA
*
92187717 AAGTCATTTTT
1 AAATCATTTTT
92187728 AGTGAAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (15 bp):
AAATCATTTTTCGAA
Found at i:92191761 original size:29 final size:28
Alignment explanation
Indices: 92191727--92191829 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
92191717 TACTCAATCA
*
92191727 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
92191756 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* * *
92191785 CGCGCACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
92191814 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
92191830 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:92193896 original size:20 final size:19
Alignment explanation
Indices: 92193866--92193906 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
92193856 AAAGTAGTGG
92193866 AAATTTATTTTCTTAGAAT
1 AAATTTATTTTCTTAGAAT
* *
92193885 AAATTCTATTTTTTTGGAAT
1 AAATT-TATTTTCTTAGAAT
92193905 AA
1 AA
92193907 TAATTTCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (19 bp):
AAATTTATTTTCTTAGAAT
Found at i:92194953 original size:24 final size:24
Alignment explanation
Indices: 92194926--92194990 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
92194916 CAGTCACAGT
*
92194926 ATTGCACAGAAGTGCCACATTTT-G
1 ATTGCACAGAAGTGCCAC-TTTTCA
*
92194950 ATTGCACTGAAGTGCCACTTTTCA
1 ATTGCACAGAAGTGCCACTTTTCA
* *
92194974 AGTGCACCGAAGTGCCA
1 ATTGCACAGAAGTGCCA
92194991 TATTCATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 4 0.11
24 32 0.89
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
ATTGCACAGAAGTGCCACTTTTCA
Found at i:92195553 original size:5 final size:5
Alignment explanation
Indices: 92195543--92195569 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
92195533 CTAGATAAAC
92195543 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
92195570 ATCTGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:92197685 original size:20 final size:20
Alignment explanation
Indices: 92197655--92197722 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 20
92197645 AATTTTGCAC
92197655 TTAATATTAAC-ATATTCATAA
1 TTAA-ATTAACTA-ATTCATAA
92197676 TTAAATTAACTAATT--TAA
1 TTAAATTAACTAATTCATAA
92197694 TATAAATTATACCTAATTCATAA
1 T-TAAATTA-A-CTAATTCATAA
92197717 TTAAAT
1 TTAAAT
92197723 AAAATTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
18 4 0.10
19 7 0.17
20 10 0.24
21 11 0.27
22 5 0.12
23 4 0.10
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAAATTAACTAATTCATAA
Found at i:92197711 original size:21 final size:18
Alignment explanation
Indices: 92197673--92197722 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 18
92197663 AACATATTCA
92197673 TAATTAAATTAACTAATT
1 TAATTAAATTAACTAATT
92197691 TAATATAAATTATACCTAATT
1 TAAT-TAAATTA-A-CTAATT
92197712 CATAATTAAAT
1 --TAATTAAAT
92197723 AAAATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.15
19 7 0.26
20 1 0.04
21 6 0.22
22 5 0.19
23 4 0.15
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATTAAATTAACTAATT
Found at i:92202788 original size:17 final size:17
Alignment explanation
Indices: 92202766--92202802 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
92202756 AACCCAACCC
*
92202766 AAAAAAAAAATCAAAAA
1 AAAAAAAAAAACAAAAA
*
92202783 AAAAAAAAAAAGAAAAA
1 AAAAAAAAAAACAAAAA
92202800 AAA
1 AAA
92202803 CCTAATCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.92, C:0.03, G:0.03, T:0.03
Consensus pattern (17 bp):
AAAAAAAAAAACAAAAA
Found at i:92203022 original size:24 final size:24
Alignment explanation
Indices: 92202984--92203046 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 24
92202974 TATTTTGGAG
92202984 AGAAGA-ATTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTGAGATTCA
92203007 AGAAGAGATTTTTTTTTTTGAGATTCA
1 AGAAGAGA---TTTTTTTTGAGATTCA
* *
92203034 AGAGGGGATTTTT
1 AGAAGAGATTTTT
92203047 CTTTTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 6 0.18
24 6 0.18
27 22 0.65
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.44
Consensus pattern (24 bp):
AGAAGAGATTTTTTTTGAGATTCA
Found at i:92203029 original size:27 final size:29
Alignment explanation
Indices: 92202991--92203067 Score: 113
Period size: 27 Copynumber: 2.7 Consensus size: 29
92202981 GAGAGAAGAA
92202991 TTTTTTTTGAGATTCAAGAAGAGA-TTT-
1 TTTTTTTTGAGATTCAAGAAGAGATTTTC
* *
92203018 TTTTTTTTGAGATTCAAGAGGGGATTTTTC
1 TTTTTTTTGAGATTCAAGAAGAGA-TTTTC
92203048 TTTTTTTTGAGATTCAAGAA
1 TTTTTTTTGAGATTCAAGAA
92203068 CAAAAAATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 22 0.50
29 3 0.07
30 19 0.43
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.49
Consensus pattern (29 bp):
TTTTTTTTGAGATTCAAGAAGAGATTTTC
Found at i:92203647 original size:3 final size:3
Alignment explanation
Indices: 92203639--92203671 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
92203629 TGTATTTCTA
92203639 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92203672 ATGGTAGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:92203797 original size:16 final size:15
Alignment explanation
Indices: 92203766--92203808 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
92203756 CCTTCATTCC
*
92203766 ATTATTATTATTACT
1 ATTATTATTTTTACT
92203781 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
92203797 ATCATTATTTTT
1 ATTATTATTTTT
92203809 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:92203933 original size:16 final size:16
Alignment explanation
Indices: 92203912--92203943 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92203902 CTATTGTTAC
92203912 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
92203928 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
92203944 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:92204044 original size:3 final size:3
Alignment explanation
Indices: 92204038--92204087 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
92204028 TAGATCATCA
92204038 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92204086 TA
1 TA
92204088 GCACTACTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:92204104 original size:9 final size:9
Alignment explanation
Indices: 92204041--92204110 Score: 59
Period size: 9 Copynumber: 7.8 Consensus size: 9
92204031 ATCATCATAT
*
92204041 TATTATTAT
1 TATTATTAC
*
92204050 TATTATTAT
1 TATTATTAC
*
92204059 TATTATTAT
1 TATTATTAC
*
92204068 TATTATTAT
1 TATTATTAC
*
92204077 TATTATTAT
1 TATTATTAC
** *
92204086 TAGCACTAC
1 TATTATTAC
*
92204095 TTTTATTAC
1 TATTATTAC
92204104 TATTATT
1 TATTATT
92204111 TAATATATTA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.61
Consensus pattern (9 bp):
TATTATTAC
Found at i:92204208 original size:22 final size:22
Alignment explanation
Indices: 92204178--92204238 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
92204168 TTATTATATC
*
92204178 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
92204200 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
92204222 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
92204239 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:92213789 original size:40 final size:39
Alignment explanation
Indices: 92213624--92213807 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
92213614 AAATTGAATG
* * *
92213624 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
92213664 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
92213704 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
92213744 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
92213783 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
92213808 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:92213832 original size:80 final size:81
Alignment explanation
Indices: 92213664--92213852 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
92213654 GCTGGAAATT
* * * *
92213664 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
92213729 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
92213745 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
92213808 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
92213824 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
92213853 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:92221933 original size:40 final size:40
Alignment explanation
Indices: 92221738--92221962 Score: 208
Period size: 40 Copynumber: 5.7 Consensus size: 40
92221728 AGAAATTGAA
* * *
92221738 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCG
* * * * * *
92221779 T-ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * * * *
92221818 CT-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
**
92221858 TTCTATCCGGGCTAAGA-CCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
92221897 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * *
92221937 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
92221963 CTTGGTGCGG
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 36 0.24
40 109 0.72
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
Found at i:92221944 original size:79 final size:79
Alignment explanation
Indices: 92221738--92221962 Score: 215
Period size: 79 Copynumber: 2.8 Consensus size: 79
92221728 AGAAATTGAA
* * * *
92221738 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-TATAACCGGGTTAAGACCCGAAG
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCTATATCCGGGTTAAGACCCGAAG
* * *
92221802 GCAATTGTGCTAGTGGC
63 GCAATTGTGCAAATCGC
* * * * * *
92221819 T-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGA-CCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC--TATATCCGGGTTAAGACCCGAAGG
*
92221882 CATTTGTGCAAATCG-
64 CAATTGTGCAAATCGC
* *
92221897 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-T-ATATCCGGGTTAAGACCCGAAGG
92221962 C
64 C
92221963 CTTGGTGCGG
Statistics
Matches: 115, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
77 4 0.03
78 3 0.03
79 66 0.57
80 41 0.36
81 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCTATATCCGGGTTAAGACCCGAAGGCA
ATTGTGCAAATCGC
Found at i:92228160 original size:205 final size:206
Alignment explanation
Indices: 92227500--92228287 Score: 1259
Period size: 205 Copynumber: 3.9 Consensus size: 206
92227490 GTAATAGGCC
* *
92227500 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGATGATTT-ATGCTGAAGCAGATCCAAGATGGTTTGGCATCC
92227563 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
65 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
92227628 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
130 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
92227693 GATGGAGAGCAG
195 GATGGAGAGCAG
*
92227705 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
92227769 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTA-GATG-AGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
*
92227832 ATCTAAGATGATTTGTTGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
92227897 ATGGAGAGCAG
196 ATGGAGAGCAG
*
92227908 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
92227972 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
* * *
92228037 ATCTAAGATAATTTGTTGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
92228102 ATGGAGAGCAG
196 ATGGAGAGCAG
* * * *
92228113 ACACATAGCAGATCTCACCTTCGGATG-TTTATGCTGAAACGGATCCAAGATGGATTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
* * * * *** * * *
92228177 TATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCGCATGCTTACGTTAAAGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
* * * * * *
92228241 ATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
92228288 AAATAAATCT
Statistics
Matches: 547, Mismatches: 30, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
203 193 0.35
204 89 0.16
205 265 0.48
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (206 bp):
ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
ATGGAGAGCAG
Found at i:92228419 original size:44 final size:43
Alignment explanation
Indices: 92228341--92228426 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
92228331 GATTTCAGCA
* *
92228341 TGGCATCCCTGTGTTTATAAGGAGCAAGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGA-AGCAGATT
**
92228385 TGGCATCCCTGTGTTTATGGGGAAC-AGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAAG-TCGAAGAAGCAGAT
92228427 CAAGAACTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 28 0.76
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGAAGCAGATT
Found at i:92228849 original size:31 final size:31
Alignment explanation
Indices: 92228811--92228893 Score: 130
Period size: 31 Copynumber: 2.7 Consensus size: 31
92228801 GAGAGAAGAA
* *
92228811 TTTTTTTTTGAGATTTAAGAAGAGATTTTTT
1 TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
* *
92228842 TTTTTTTTTGAGATTCAAGAGGGGATTTTTC
1 TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
92228873 TTTTTTTTTGAGATTCAAGAA
1 TTTTTTTTTGAGATTCAAGAA
92228894 CAAAAAATCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.54
Consensus pattern (31 bp):
TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
Found at i:92229357 original size:3 final size:3
Alignment explanation
Indices: 92229349--92229383 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
92229339 TGCATTTTAA
92229349 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
92229384 GTGTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:92229483 original size:3 final size:3
Alignment explanation
Indices: 92229475--92229507 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
92229465 TGTATTTCTA
92229475 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92229508 ATGGTAGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:92229633 original size:16 final size:15
Alignment explanation
Indices: 92229602--92229644 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
92229592 CCTTCATTCC
*
92229602 ATTATTATTATTACT
1 ATTATTATTTTTACT
92229617 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
92229633 ATCATTATTTTT
1 ATTATTATTTTT
92229645 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:92229769 original size:16 final size:16
Alignment explanation
Indices: 92229748--92229779 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92229738 CTATTGTTAC
92229748 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
92229764 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
92229780 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:92229950 original size:3 final size:3
Alignment explanation
Indices: 92229874--92229938 Score: 114
Period size: 3 Copynumber: 22.0 Consensus size: 3
92229864 ATAGATCATC
92229874 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
92229921 ATT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT
92229939 TAATATATTA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 57 0.97
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:92230037 original size:22 final size:22
Alignment explanation
Indices: 92230007--92230067 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
92229997 TTATTATATC
*
92230007 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
92230029 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
92230051 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
92230068 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:92242386 original size:205 final size:206
Alignment explanation
Indices: 92241725--92242513 Score: 1268
Period size: 204 Copynumber: 3.9 Consensus size: 206
92241715 GTAATAGGCC
* *
92241725 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGATGATTT-ATGCTGAAGCAGATCCAAGATGGTTTGGCATCC
92241788 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCA
65 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCA
92241853 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
130 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
92241918 GATGGAGAGCAG
195 GATGGAGAGCAG
*
92241930 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
*
92241994 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATG-AGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
92242058 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
92242123 ATGGAGAGCAG
196 ATGGAGAGCAG
*
92242134 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
*
92242198 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
* * *
92242263 ATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
92242328 ATGGAGAGCAG
196 ATGGAGAGCAG
* * * *
92242339 ACACATAGCAGATCTCACCTTCGGATG-TTTATGCTGAAACGGATCCAAGATGGATTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
* * * * * * * * *
92242403 TATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCGCATGCTTACGTTAAAGCAA
66 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
* * * * * *
92242467 ATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
131 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
92242514 AAATAAATCT
Statistics
Matches: 548, Mismatches: 31, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
203 1 0.00
204 276 0.50
205 271 0.49
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (206 bp):
ACACATAGCAGATCTCACCTTCAGATGATTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
ATGGAGAGCAG
Found at i:92242491 original size:409 final size:409
Alignment explanation
Indices: 92241725--92242513 Score: 1328
Period size: 409 Copynumber: 1.9 Consensus size: 409
92241715 GTAATAGGCC
*
92241725 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
92241790 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
* *
92241855 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATAATTTGTCGTCTCTGTATCGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGA
* *
92241920 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAACGGATCCAAGATGGAT
* * **
92241985 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
261 TGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGATTACG
* * * *
92242050 ATGAGCAAATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCT
326 ATAAGCAAATCTAAGATGATTTGGCATCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCT
92242115 TCACTTTGATGGAGAGCAG
391 TCACTTTGATGGAGAGCAG
* *
92242134 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
92242199 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
92242264 TCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATAATTTGTCGTCTCTGTATCGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGA
*
92242329 TGGAGAGCAGACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAACGGATCCAAGATGGAT
196 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAACGGATCCAAGATGGAT
* * * *
92242394 TGGCATCCTTATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCGCATGCTTACG
261 TGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGATTACG
* * * *
92242458 TTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
326 AT-AAGCAAATCTAAGATGATTTGGCATCTCTGTATCGTCAGAGAACAAATCGAAG
92242514 AAATAAATCT
Statistics
Matches: 353, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
408 26 0.07
409 327 0.93
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (409 bp):
ACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
TCTAAGATAATTTGTCGTCTCTGTATCGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAACGGATCCAAGATGGAT
TGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGATTACG
ATAAGCAAATCTAAGATGATTTGGCATCTCTGTATCGTCAGAGAACAAATCGAAGTTTGGCATCT
TCACTTTGATGGAGAGCAG
Found at i:92242645 original size:44 final size:43
Alignment explanation
Indices: 92242567--92242652 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
92242557 GATTTCAGCA
* *
92242567 TGGCATCCCTGTGTTTATAAGGAGCAAGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGA-AGCAGATT
**
92242611 TGGCATCCCTGTGTTTATGGGGAAC-AGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAAG-TCGAAGAAGCAGAT
92242653 CAAGAACTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 28 0.76
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGAAGCAGATT
Found at i:92242823 original size:1 final size:1
Alignment explanation
Indices: 92242817--92242856 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
92242807 AACCCAACCC
** *
92242817 AAAAAAAAATCAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
92242857 CCTAATCTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.03
Consensus pattern (1 bp):
A
Found at i:92243083 original size:30 final size:31
Alignment explanation
Indices: 92243047--92243128 Score: 139
Period size: 30 Copynumber: 2.7 Consensus size: 31
92243037 GAGAGAAGAA
92243047 TTTTTTTTTGAGATTCAAGAAGAGATTTTT-
1 TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
* *
92243077 TTTTTTTTTGAGATTCAAGAGGGGATTTTTC
1 TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
92243108 TTTTTTTTTGAGATTCAAGAA
1 TTTTTTTTTGAGATTCAAGAA
92243129 CAAAAAATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 28 0.58
31 20 0.42
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.52
Consensus pattern (31 bp):
TTTTTTTTTGAGATTCAAGAAGAGATTTTTC
Found at i:92243085 original size:31 final size:30
Alignment explanation
Indices: 92243047--92243128 Score: 128
Period size: 31 Copynumber: 2.7 Consensus size: 30
92243037 GAGAGAAGAA
*
92243047 TTTTTTTTTGAGATTCAAGAAGAGATTTTT
1 TTTTTTTTTGAGATTCAAGAAGAGATTTTC
* *
92243077 TTTTTTTTTGAGATTCAAGAGGGGATTTTTC
1 TTTTTTTTTGAGATTCAAGAAGAGA-TTTTC
92243108 TTTTTTTTTGAGATTCAAGAA
1 TTTTTTTTTGAGATTCAAGAA
92243129 CAAAAAATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 23 0.49
31 24 0.51
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.52
Consensus pattern (30 bp):
TTTTTTTTTGAGATTCAAGAAGAGATTTTC
Found at i:92243587 original size:3 final size:3
Alignment explanation
Indices: 92243579--92243620 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
92243569 TTTCTGCATT
92243579 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
92243621 GTGTATATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:92243722 original size:3 final size:3
Alignment explanation
Indices: 92243714--92243743 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
92243704 TGTATTTCTA
92243714 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92243744 ATGGTAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:92243869 original size:16 final size:15
Alignment explanation
Indices: 92243838--92243880 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
92243828 CCTTCATTCC
*
92243838 ATTATTATTATTACT
1 ATTATTATTTTTACT
92243853 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
92243869 ATCATTATTTTT
1 ATTATTATTTTT
92243881 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:92244005 original size:16 final size:16
Alignment explanation
Indices: 92243984--92244015 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92243974 CTATTGTTAC
92243984 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
92244000 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
92244016 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:92244166 original size:3 final size:3
Alignment explanation
Indices: 92244113--92244154 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
92244103 GATCATCATC
*
92244113 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
92244155 TAATATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:92244253 original size:22 final size:22
Alignment explanation
Indices: 92244223--92244283 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
92244213 TTATTATATC
*
92244223 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
92244245 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
92244267 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
92244284 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:92247054 original size:20 final size:20
Alignment explanation
Indices: 92247031--92247078 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
92247021 TTCCACTTCA
* *
92247031 GTGCCCCTATTTGCACTTTG
1 GTGCCCCTATATACACTTTG
* *
92247051 GTGCCTCTGTATACACTTTG
1 GTGCCCCTATATACACTTTG
*
92247071 GTGTCCCT
1 GTGCCCCT
92247079 GGTGCCCTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.10, C:0.29, G:0.21, T:0.40
Consensus pattern (20 bp):
GTGCCCCTATATACACTTTG
Found at i:92247128 original size:49 final size:49
Alignment explanation
Indices: 92247031--92247128 Score: 108
Period size: 49 Copynumber: 2.0 Consensus size: 49
92247021 TTCCACTTCA
* *** *
92247031 GTGCCCCTATTTGCACTTTGGTGCCTCTGTATACACTTTGGTGTCCCTG
1 GTGCCCCTATTTGCACTTTGGTGCCCCTGTATACACTTCAATGCCCCTG
* * *
92247080 GTGCCCTTGTTTGCACATTT-GTGCCCCTGTCTACACTTCAATGCCCCTG
1 GTGCCCCTATTTGCAC-TTTGGTGCCCCTGTATACACTTCAATGCCCCTG
92247129 TTATGCATCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 37 0.93
50 3 0.08
ACGTcount: A:0.11, C:0.32, G:0.20, T:0.37
Consensus pattern (49 bp):
GTGCCCCTATTTGCACTTTGGTGCCCCTGTATACACTTCAATGCCCCTG
Found at i:92248680 original size:19 final size:19
Alignment explanation
Indices: 92248644--92248682 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
92248634 TTTTCATCAT
* *
92248644 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
92248663 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
92248682 A
1 A
92248683 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:92249191 original size:28 final size:28
Alignment explanation
Indices: 92249143--92249233 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
92249133 GTGACAGAGT
*
92249143 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
92249172 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
*
92249200 CACCAGAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
92249228 CACCAG
1 CACCAG
92249234 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:92249386 original size:28 final size:28
Alignment explanation
Indices: 92249339--92249403 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
92249329 AAATTAACCC
*
92249339 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
92249367 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
92249395 TAGGGGTAT
1 TAGGGGTAT
92249404 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:92252716 original size:98 final size:99
Alignment explanation
Indices: 92252532--92252740 Score: 244
Period size: 98 Copynumber: 2.1 Consensus size: 99
92252522 AATTGAAAGA
* ** ** *
92252532 TAAGACTATGGTTGGACCATGGTAGTGATTATATGTAAGACCATATTTGGGCTATGGAATTTTAA
1 TAAGACCATGGTTGGACCATGACAGTGATTATATGT-A-ACCATAGCTGGGCTATGGAATTCTAA
* *
92252597 TGAAAAGACCATAACTAGGTTATGGCACCT-TTAATG
64 TGAAAAGACCATAACTAGGTTATGACA-CTATAAATG
* *
92252633 TAAGACCATGGTTGGACCATGACAGT-ATTTATATGT-ACCATAGCTGGGCTATGGCATTCTGAT
1 TAAGACCATGGTTGGACCATGACAGTGA-TTATATGTAACCATAGCTGGGCTATGGAATTCTAAT
* * *
92252696 GATAAGACCATAATTGGGTTATGACACTATAAATG
65 GAAAAGACCATAACTAGGTTATGACACTATAAATG
92252731 TAAGACCATG
1 TAAGACCATG
92252741 CCAAGGCCAT
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
97 2 0.02
98 59 0.63
100 1 0.01
101 31 0.33
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (99 bp):
TAAGACCATGGTTGGACCATGACAGTGATTATATGTAACCATAGCTGGGCTATGGAATTCTAATG
AAAAGACCATAACTAGGTTATGACACTATAAATG
Found at i:92253039 original size:16 final size:17
Alignment explanation
Indices: 92253020--92253052 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
92253010 ATGATAATAC
*
92253020 ATGAAAT-ATTGATATA
1 ATGAAATGAGTGATATA
92253036 ATGAAATGAGTGATATA
1 ATGAAATGAGTGATATA
92253053 TGTTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
ATGAAATGAGTGATATA
Found at i:92255555 original size:43 final size:41
Alignment explanation
Indices: 92255499--92255704 Score: 143
Period size: 43 Copynumber: 4.9 Consensus size: 41
92255489 AACTCGTACA
* * ** *
92255499 ATGCCATATCCCAGATATGGTCTTACTTGTCATCAAATATA-G
1 ATGCCATGTCCCAGACATGGTCTTACACGACATC--ATATACG
*
92255541 ATGCCACTGTCCCAGACAGGGTCTTACACGACATCATATACG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGACATCATATACG
* * **
92255583 ATGCCAATGTCCCATACATGGTCTTACATGTA-ATC-TCAGTTTG
1 ATGCC-ATGTCCCAGACATGGTCTTACACG-ACATCAT-A-TACG
* **
92255626 ATGCCAATGTCCAAGACATGGTCTTACACGTA-ATC-TCAGTTTG
1 ATGCC-ATGTCCCAGACATGGTCTTACACG-ACATCAT-A-TACG
*
92255669 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
1 ATGCC-ATGTCCCAGACATGGTCTTACACGACATCA
92255705 AATCTCGGAA
Statistics
Matches: 141, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
41 6 0.04
42 37 0.26
43 98 0.70
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGCCATGTCCCAGACATGGTCTTACACGACATCATATACG
Found at i:92255629 original size:85 final size:86
Alignment explanation
Indices: 92255540--92255696 Score: 221
Period size: 85 Copynumber: 1.8 Consensus size: 86
92255530 ATCAAATATA
* * *
92255540 GATGCCACTGTCCCAGACAGGGTCTTACACG-ACATCAT-A-TACGATGCCAATGTCCCATACAT
1 GATGCCAATGTCCAAGACAGGGTCTTACACGTA-ATC-TCAGTACGATGCCAATGTCCCAGACAT
92255602 GGTCTTACATGTAATCTCAGTTT
64 GGTCTTACATGTAATCTCAGTTT
* **
92255625 GATGCCAATGTCCAAGACATGGTCTTACACGTAATCTCAGTTTGATGCCAATGTCCCAGACATGG
1 GATGCCAATGTCCAAGACAGGGTCTTACACGTAATCTCAGTACGATGCCAATGTCCCAGACATGG
92255690 TCTTACA
66 TCTTACA
92255697 CGAAATCAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 1 0.02
85 32 0.51
86 30 0.48
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (86 bp):
GATGCCAATGTCCAAGACAGGGTCTTACACGTAATCTCAGTACGATGCCAATGTCCCAGACATGG
TCTTACATGTAATCTCAGTTT
Found at i:92261748 original size:16 final size:17
Alignment explanation
Indices: 92261729--92261766 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
92261719 GAATTTGACA
*
92261729 TTTGGCAAACTCT-AGG
1 TTTGGCAAACCCTAAGG
92261745 TTTGGCAAACCCTAAGG
1 TTTGGCAAACCCTAAGG
92261762 TTTGG
1 TTTGG
92261767 TGGGCTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (17 bp):
TTTGGCAAACCCTAAGG
Found at i:92262096 original size:29 final size:29
Alignment explanation
Indices: 92262054--92262117 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
92262044 CATGTTTGTA
92262054 CATTTTGTTTATGTTTCTTTTTTTCCTTT
1 CATTTTGTTTATGTTTCTTTTTTTCCTTT
92262083 CATTTTGTTTATGTTTCTTTTTTTCCTTT
1 CATTTTGTTTATGTTTCTTTTTTTCCTTT
92262112 CATTTT
1 CATTTT
92262118 CACTGAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.72
Consensus pattern (29 bp):
CATTTTGTTTATGTTTCTTTTTTTCCTTT
Found at i:92266091 original size:43 final size:43
Alignment explanation
Indices: 92265966--92266129 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
92265956 CGAAAAGCTC
** * * *
92265966 GTACAATGTGAACATCCCAGACGTGGTCTTGCATGT-AATCAA
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAA
* * *
92266008 ATATCAATGCC-ACTGTTCCAGATAG-GGTCTTACACG-AAATCAA
1 GTA-CAATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAA
92266051 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAA
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC--AA
* * * * *
92266096 GT-CGATGCCAACTTTCTAGACGTGGCCTTACACG
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACG
92266130 ATAACACATA
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 35 0.36
44 28 0.29
45 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAA
Found at i:92275335 original size:46 final size:45
Alignment explanation
Indices: 92275285--92275460 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
92275275 TGGTTGAGCA
92275285 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
92275331 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
92275378 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
92275424 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92275461 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:92275441 original size:93 final size:93
Alignment explanation
Indices: 92275282--92275452 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
92275272 GGATGGTTGA
* *
92275282 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92275347 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
92275375 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92275440 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92275453 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:92278451 original size:30 final size:30
Alignment explanation
Indices: 92278373--92278460 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
92278363 CATAGTATCA
* * * *
92278373 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
92278403 TATTTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
92278433 TATCTTGGATTTCTTTATT-TGGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
92278461 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
29 8 0.16
30 42 0.84
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:92278459 original size:14 final size:14
Alignment explanation
Indices: 92278377--92278461 Score: 80
Period size: 15 Copynumber: 5.8 Consensus size: 14
92278367 GTATCATATC
*
92278377 TTGGGTTTCTTTAT
1 TTGGATTTCTTTAT
* *
92278391 CCTGGATCTCTTTATT
1 -TTGGATTTCTTTA-T
92278407 TTGGATTTCTTTAT
1 TTGGATTTCTTTAT
* *
92278421 TCTGGGTTTCTCTAT
1 T-TGGATTTCTTTAT
92278436 CTTGGATTTCTTTAT
1 -TTGGATTTCTTTAT
*
92278451 TTGGTTTTCTT
1 TTGGATTTCTT
92278462 GTTATCTTTG
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
14 12 0.21
15 43 0.75
16 2 0.04
ACGTcount: A:0.09, C:0.14, G:0.16, T:0.60
Consensus pattern (14 bp):
TTGGATTTCTTTAT
Found at i:92280895 original size:46 final size:46
Alignment explanation
Indices: 92280839--92281013 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
92280829 TGGTTGAGCA
*
92280839 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
92280885 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
92280932 TCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
92280977 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92281014 GCAGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
45 26 0.25
46 53 0.50
47 26 0.25
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:92280994 original size:92 final size:93
Alignment explanation
Indices: 92280836--92281005 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
92280826 GGATGGTTGA
* *
92280836 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
92280901 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
92280929 GCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
92280993 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92281006 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 49 0.68
93 23 0.32
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:92284982 original size:43 final size:42
Alignment explanation
Indices: 92284857--92285018 Score: 123
Period size: 43 Copynumber: 3.8 Consensus size: 42
92284847 TGAAAAGCTT
* * * *
92284857 GTACAATGCCAACATTCCAGACGTGGTCTTACATGAAATCAA
1 GTACAATGCCAACGTCCCAGACATGGTCTTACAAGAAATCAA
* * * *
92284899 ATATCGATGCC-ACTGTCTCAGACAGGGTCTTACACA-AAATCAA
1 GTA-CAATGCCAAC-GTCCCAGACATGGTCTTACA-AGAAATCAA
*
92284942 GTACAATGCCAACGTCCCAGACATGGTCTTATAAGTAAATCATAA
1 GTACAATGCCAACGTCCCAGACATGGTCTTACAAG-AAATC--AA
** * **
92284987 GT-CGGTGCCAACGTCCTAGATTTGGTCTTACA
1 GTACAATGCCAACGTCCCAGACATGGTCTTACA
92285019 CGATAACACA
Statistics
Matches: 93, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 37 0.40
44 24 0.26
45 4 0.04
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
GTACAATGCCAACGTCCCAGACATGGTCTTACAAGAAATCAA
Found at i:92287102 original size:21 final size:21
Alignment explanation
Indices: 92287077--92287118 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92287067 AAAAAGAGAA
92287077 TAATTAGCCAAAATTGCAATT
1 TAATTAGCCAAAATTGCAATT
* *
92287098 TAATTAGCCGAAATTGTAATT
1 TAATTAGCCAAAATTGCAATT
92287119 GAGGTAAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (21 bp):
TAATTAGCCAAAATTGCAATT
Done.