Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 299 of 425
Found at i:92954613 original size:20 final size:20
Alignment explanation
Indices: 92954590--92954633 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
92954580 GTTTTGATTG
92954590 TTTAAATAAAATTTTAAGAT
1 TTTAAATAAAATTTTAAGAT
* *
92954610 TTTAAATAAAGTTTTAAGGT
1 TTTAAATAAAATTTTAAGAT
92954630 TTTA
1 TTTA
92954634 TTTTTTGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (20 bp):
TTTAAATAAAATTTTAAGAT
Found at i:92957786 original size:7 final size:7
Alignment explanation
Indices: 92957770--92957852 Score: 54
Period size: 7 Copynumber: 12.1 Consensus size: 7
92957760 TTTAAGTAAT
*
92957770 ATAATGA
1 ATAATAA
92957777 ATAATAA
1 ATAATAA
92957784 ATAAT--
1 ATAATAA
92957789 ATAATAA
1 ATAATAA
*
92957796 ATAATAT
1 ATAATAA
92957803 ATACATAA
1 ATA-ATAA
92957811 CATACATAA
1 -ATA-ATAA
92957820 A-AA-AA
1 ATAATAA
92957825 ATAAGT-A
1 ATAA-TAA
92957832 AT-ATAGA
1 ATAATA-A
92957839 ATAA-AA
1 ATAATAA
92957845 ATAATAA
1 ATAATAA
92957852 A
1 A
92957853 CGTTATAGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 22
0.71 0.03 0.25
Matches are distributed among these distances:
5 9 0.15
6 9 0.15
7 31 0.50
8 5 0.08
9 8 0.13
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.27
Consensus pattern (7 bp):
ATAATAA
Found at i:92957843 original size:23 final size:23
Alignment explanation
Indices: 92957816--92957867 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
92957806 CATAACATAC
92957816 ATAAAAAAAAT-AA-GTAATATAGA
1 ATAAAAAAAATAAACGT--TATAGA
*
92957839 ATAAAAATAATAAACGTTATAGA
1 ATAAAAAAAATAAACGTTATAGA
92957862 ATAAAA
1 ATAAAA
92957868 CATAATTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 22 0.85
24 2 0.08
25 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (23 bp):
ATAAAAAAAATAAACGTTATAGA
Found at i:92958053 original size:20 final size:19
Alignment explanation
Indices: 92958030--92958071 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
92958020 ATTTGTGAAA
92958030 AATAATATACGATAAATAAT
1 AATAATATACGATAAA-AAT
* *
92958050 AATAATGTATGATAAAAAT
1 AATAATATACGATAAAAAT
92958069 AAT
1 AAT
92958072 CTTATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
AATAATATACGATAAAAAT
Found at i:92958116 original size:13 final size:13
Alignment explanation
Indices: 92958100--92958124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92958090 AAAGTAAGGT
92958100 TAAAAAATAAAAA
1 TAAAAAATAAAAA
92958113 TAAAAAATAAAA
1 TAAAAAATAAAA
92958125 CAATATCTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:92960198 original size:210 final size:211
Alignment explanation
Indices: 92959695--92960253 Score: 665
Period size: 210 Copynumber: 2.7 Consensus size: 211
92959685 AAAACTGCTT
* * ** * * * *
92959695 CTTCGATTTATTCTCTAACAATACAGAGGTGCCAAATTATCTTAGATTTGTTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * * * **
92959760 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTG--TAAGCACA-A-AGAT--GA-CAAA
66 GTGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCTGCCGAA-TACAGAGAGATAAGATC-TG
* * *
92959818 TCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGATCAGATCTTCCATGTATCTGTTCTCTAT
129 TCATCTTGGATC-TGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTGTTCTCTAT
* * * *
92959883 TGAATGTGGAGATGCCAGA
193 TCAAAGTGGAAATGCCACA
92959902 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT-CTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
92959966 GTGAATGCCAAATCAGCTATATCTTCAATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
* * * * *
92960031 ATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGTTTCTGCCTTC-C-A-T
131 ATCTTGGATCTGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTG--TTCTCTATT
92960093 CAAAGTGGAAATGCCACA
194 CAAAGTGGAAATGCCACA
*
92960111 CTTCGATTTGTTCTCTGACAGTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
92960176 GTGAAAGCCAAATCAACTATATCTTCGATCTGCTCCAC-ACCGAATACAGAGAGATAAGATCTGT
66 GTGAAAGCCAAATCAGCTATATCTTCAATCTGCTCC-CTGCCGAATACAGAGAGATAAGATCTGT
* *
92960240 CACCTTGAATCTGC
130 CATCTTGGATCTGC
92960254 CCTGATAATG
Statistics
Matches: 305, Mismatches: 36, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
206 47 0.15
207 46 0.15
208 3 0.01
209 67 0.22
210 122 0.40
211 16 0.05
212 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (211 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTGTTCTCTATTCA
AAGTGGAAATGCCACA
Found at i:92966923 original size:209 final size:210
Alignment explanation
Indices: 92966516--92967290 Score: 1187
Period size: 209 Copynumber: 3.7 Consensus size: 210
92966506 AGGCCTTGTA
* * * *
92966516 CCAGGCTTCGATTTGTTCTCTGACAATACAAAAATGACAAATCATCTTAGATTTGCTTCATCGTA
1 CCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
*
92966581 AACACGTGAAGGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
66 AACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
*
92966646 CTGTCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGGGTCTGCCTTCC
131 CTGTCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCC
92966711 ATCAAAGTGGAAATG
196 ATCAAAGTGGAAATG
* *
92966726 TCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATTGTA
1 CCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
* * **
92966791 AACACGTGAAAGCCAAATCA-CCATATCTTCGATCTGTTCCCCGCAAAATACAGAGAGATAAGAT
66 AACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
* * * * * * * *
92966855 CTATCATTTTAGATCTGCTTCAGTGTAAACATCCGAAGGTAAGATCTACTACGTGTCTACCTTCC
131 CTGTCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCC
92966920 ATCAAAGTGGAAATG
196 ATCAAAGTGGAAATG
* * *
92966935 CCAGACTTTGATTTGTTCTCTGACCATACAGAGACGACAAATCATCTTAAATTT-CTTCATCGTA
1 CCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
* *
92966999 AATACGTGAATGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
66 AACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
* * * *
92967064 CTGTCATCTTGGATCTACTTTAGTGTAAACATCTAAAGGTGAGATCTGCTATGTATCTGCCTTCC
131 CTGTCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCC
92967129 ATCAAAGTGGAAATG
196 ATCAAAGTGGAAATG
* * *
92967144 CCACACTTCAATTTGTTTTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
1 CCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
* * * * *
92967209 AACACGTGAAAGCCAAATCAACAATATCTT-GATCTACTCCACACCGAATACAGAGAGATAAGAT
66 AACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
*
92967273 CTGTCATCTTGAATCTGC
131 CTGTCATCTTGGATCTGC
92967291 CCTGATAATG
Statistics
Matches: 505, Mismatches: 58, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
208 27 0.05
209 364 0.72
210 114 0.23
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (210 bp):
CCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA
AACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAT
CTGTCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCC
ATCAAAGTGGAAATG
Found at i:92979301 original size:12 final size:12
Alignment explanation
Indices: 92979268--92979312 Score: 63
Period size: 12 Copynumber: 3.6 Consensus size: 12
92979258 AAATTTTAAG
*
92979268 TAATATAATGAA
1 TAATATAATAAA
92979280 TAATGAATAATAAA
1 TAAT--ATAATAAA
92979294 TAATATAATAAA
1 TAATATAATAAA
92979306 TAATATA
1 TAATATA
92979313 CACATAACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 19 0.63
14 11 0.37
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (12 bp):
TAATATAATAAA
Found at i:92979355 original size:27 final size:29
Alignment explanation
Indices: 92979284--92979359 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 29
92979274 AATGAATAAT
* *
92979284 GAATAATAAATAATATAATAAATAATATA
1 GAATAACAAATAATAAAATAAATAATATA
* *
92979313 CACATAACATATATAA-AAAATAAGTAATATA
1 GA-ATAACA-A-ATAATAAAATAAATAATATA
92979344 GAATAA-AAATAATAAA
1 GAATAACAAATAATAAA
92979360 CGTTATAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
27 4 0.11
28 4 0.11
29 2 0.05
30 9 0.24
31 15 0.39
32 4 0.11
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (29 bp):
GAATAACAAATAATAAAATAAATAATATA
Found at i:92979467 original size:15 final size:15
Alignment explanation
Indices: 92979449--92979505 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
92979439 ATGTAAGGAC
*
92979449 AATATATATATAATT
1 AATAAATATATAATT
*
92979464 AATAAATATATAATAC
1 AATAAATATATAAT-T
92979480 AAGTAAA-ATAT-ATT
1 AA-TAAATATATAATT
92979494 AAT-AATATATAA
1 AATAAATATATAA
92979506 AAATAATGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
12 2 0.06
13 5 0.14
14 3 0.09
15 15 0.43
16 6 0.17
17 4 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (15 bp):
AATAAATATATAATT
Found at i:92979562 original size:20 final size:19
Alignment explanation
Indices: 92979539--92979580 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
92979529 ATTTGTGAAA
92979539 AATAATATACGATAAATAAT
1 AATAATATACGATAAA-AAT
* *
92979559 AATAATGTATGATAAAAAT
1 AATAATATACGATAAAAAT
92979578 AAT
1 AAT
92979581 CTTATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
AATAATATACGATAAAAAT
Found at i:92979625 original size:13 final size:13
Alignment explanation
Indices: 92979609--92979633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92979599 AAAGTAAGGT
92979609 TAAAAAATAAAAA
1 TAAAAAATAAAAA
92979622 TAAAAAATAAAA
1 TAAAAAATAAAA
92979634 CAATATCTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:92983078 original size:29 final size:29
Alignment explanation
Indices: 92983036--92983098 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
92983026 AAACTGTGAA
*
92983036 AACAAATTGCAATCTTTTATTCCAATAGC
1 AACAGATTGCAATCTTTTATTCCAATAGC
92983065 AACAGATTGCAATCTTTTATTCCAATAGC
1 AACAGATTGCAATCTTTTATTCCAATAGC
92983094 AACAG
1 AACAG
92983099 TAGCACATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (29 bp):
AACAGATTGCAATCTTTTATTCCAATAGC
Found at i:92984217 original size:21 final size:21
Alignment explanation
Indices: 92984191--92984238 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
92984181 TGATAGATTT
92984191 TGATTTGTTAAGTTTTAATTC
1 TGATTTGTTAAGTTTTAATTC
*
92984212 TGATTTGTTAAGTTTTATTTC
1 TGATTTGTTAAGTTTTAATTC
*
92984233 AGATTT
1 TGATTT
92984239 ATTTTACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.04, G:0.15, T:0.58
Consensus pattern (21 bp):
TGATTTGTTAAGTTTTAATTC
Found at i:92989659 original size:14 final size:15
Alignment explanation
Indices: 92989638--92989679 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
92989628 ACCACCATAG
92989638 CTCTTTTTTCCTTTT
1 CTCTTTTTTCCTTTT
*
92989653 C-C-TTTTTCTTTTT
1 CTCTTTTTTCCTTTT
*
92989666 CTATTTTTTCCTTT
1 CTCTTTTTTCCTTT
92989680 ATGACCCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 10 0.45
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (15 bp):
CTCTTTTTTCCTTTT
Found at i:92994968 original size:19 final size:20
Alignment explanation
Indices: 92994926--92994974 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
92994916 GGTCATTTAT
*
92994926 ATTATCAAAAGTATTATATG
1 ATTATTAAAAGTATTATATG
92994946 ATTATTAAAAGTTATT-T-TG
1 ATTATTAAAAG-TATTATATG
92994965 ATTATTAAAA
1 ATTATTAAAA
92994975 TCATTAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 12 0.44
20 11 0.41
21 4 0.15
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (20 bp):
ATTATTAAAAGTATTATATG
Found at i:92996058 original size:56 final size:55
Alignment explanation
Indices: 92995991--92996140 Score: 207
Period size: 53 Copynumber: 2.7 Consensus size: 55
92995981 AATAGTTACG
92995991 TAGGAATCAAATTGCTAAAATATAATATCCCATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAA-ATAATATCCCATAATAATATCCTATAATATCCCAT
* * * *
92996047 TAGGAATCAAATTGCTAAGAAATAATATCTC--AA-AATATTCTGTAATATCTCAT
1 TAGGAATCAAATTGCTAA-AAATAATATCCCATAATAATATCCTATAATATCCCAT
*
92996100 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATAT
1 TAGGAATCAAATTGCTAAAA-ATAATATCCCATAATAATAT
92996141 ATTAACACCC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
52 2 0.02
53 43 0.52
54 2 0.02
55 2 0.02
56 32 0.39
57 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (55 bp):
TAGGAATCAAATTGCTAAAAATAATATCCCATAATAATATCCTATAATATCCCAT
Found at i:92999241 original size:39 final size:39
Alignment explanation
Indices: 92999198--92999323 Score: 155
Period size: 39 Copynumber: 3.2 Consensus size: 39
92999188 GGACTTTAGC
* * * *
92999198 CCGGACATATTTCCAGCACGTAGCCTGTGGACCTTAAGT
1 CCGGATATATTTCCAGCACATAGCCTGCGGACCCTAAGT
* *
92999237 CCGGATATAATTT-CAACACATAGCCTACGGACCCTAAGT
1 CCGGATAT-ATTTCCAGCACATAGCCTGCGGACCCTAAGT
* *
92999276 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTTAGT
1 CCGGATATATTTCCAGCACATAGCCTGCGGACCCTAAGT
*
92999315 CTGGATATA
1 CCGGATATA
92999324 CATCACTGAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
38 3 0.04
39 67 0.91
40 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CCGGATATATTTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:93002226 original size:29 final size:29
Alignment explanation
Indices: 93002193--93002250 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
93002183 TTCTGCTGTA
93002193 AAATATGTTTGGCAAATAAACTTATTAAT
1 AAATATGTTTGGCAAATAAACTTATTAAT
93002222 AAATATGTTTGGCAAATAAACTTATTAAT
1 AAATATGTTTGGCAAATAAACTTATTAAT
93002251 TAACATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (29 bp):
AAATATGTTTGGCAAATAAACTTATTAAT
Found at i:93003210 original size:23 final size:23
Alignment explanation
Indices: 93003184--93003256 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
93003174 TTTTATCATG
93003184 AAGGCATCACAAATTTCACCATA
1 AAGGCATCACAAATTTCACCATA
* * *
93003207 AAGGTATCACAAAATAT-GCCATA
1 AAGGCATCAC-AAATTTCACCATA
* * * *
93003230 AATGCATCACAAAATACACCACA
1 AAGGCATCACAAATTTCACCATA
93003253 AAGG
1 AAGG
93003257 TTTTACAAAA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
22 3 0.08
23 29 0.78
24 5 0.14
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.18
Consensus pattern (23 bp):
AAGGCATCACAAATTTCACCATA
Found at i:93003256 original size:46 final size:46
Alignment explanation
Indices: 93003187--93003277 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
93003177 TATCATGAAG
* * * *
93003187 GCATCACAAATTTCACCATAAAGGTATCACAAAATATGCCATAAAT
1 GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAAT
* *
93003233 GCATCACAAAATACACCACAAAGGTTTTACAAAATACGCCATAAA
1 GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAA
93003278 GGCTTTGTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.47, C:0.23, G:0.09, T:0.21
Consensus pattern (46 bp):
GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAAT
Found at i:93005403 original size:46 final size:46
Alignment explanation
Indices: 93005308--93005429 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
93005298 TCTCGTAGCC
* * * *
93005308 GATGCATGTCCCAGACATGTCTTATACTGGCTTACGTCCCAAGGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGGCT
* * *
93005354 GATGCATGTCCCAGACATGTCTTACAGTAGCACT-CGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CTACGTCCCAAGGCT
*
93005400 GATGCCATGTCCCAGATATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
93005430 GGCTCTCATA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 41 0.64
47 14 0.22
48 9 0.14
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGGCT
Found at i:93005452 original size:94 final size:92
Alignment explanation
Indices: 93005209--93005475 Score: 251
Period size: 94 Copynumber: 2.9 Consensus size: 92
93005199 CATTTTCGAG
* *
93005209 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTTTCACATAACCGT-GTTGATGCCATGTC
1 GCTGATGCCATGTCCCAGATATGGTCTTACACTGGC-TTCTCATAA--GTGGTTGATG-CATGTC
* *
93005273 CCAAACATGGTCTTACACTGAAACATCTCGTA
62 CCAGACAT-GTCTTACACTGAAACATCTCATA
* * * **
93005305 GCCGATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACGTCCCAA--GGTTGATGCATGTCCC
1 GCTGATGCCATGTCCCAGATATGGTCTTACACTGGCTT-C-TCATAAGTGGTTGATGCATGTCCC
* ** *
93005366 AGACATGTCTTACAGTAGCACTCGTCTCA-A
64 AGACATGTCTTACACT-G-AAACATCTCATA
*
93005396 TGCTGATGCCATGTCCCAGATATGGTCTTACACTGGC-TCTCATAATGTGGTCGATGCATGTCCC
1 -GCTGATGCCATGTCCCAGATATGGTCTTACACTGGCTTCTCATAA-GTGGTTGATGCATGTCCC
*
93005460 AGACATGTTTTACACT
64 AGACATGTCTTACACT
93005476 CGCTCACACA
Statistics
Matches: 139, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
90 9 0.06
91 19 0.14
92 20 0.14
93 16 0.12
94 53 0.38
95 16 0.12
96 6 0.04
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
GCTGATGCCATGTCCCAGATATGGTCTTACACTGGCTTCTCATAAGTGGTTGATGCATGTCCCAG
ACATGTCTTACACTGAAACATCTCATA
Found at i:93009841 original size:36 final size:36
Alignment explanation
Indices: 93009794--93009865 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
93009784 AATGCAACGA
93009794 TTGCTTATAACAGATATGTCCAAGCCAAAACAAAGT
1 TTGCTTATAACAGATATGTCCAAGCCAAAACAAAGT
93009830 TTGCTTATAACAGATATGTCCAAGCCAAAACAAAGT
1 TTGCTTATAACAGATATGTCCAAGCCAAAACAAAGT
93009866 CCCAACCACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (36 bp):
TTGCTTATAACAGATATGTCCAAGCCAAAACAAAGT
Found at i:93010067 original size:21 final size:21
Alignment explanation
Indices: 93010013--93010067 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
93010003 GTGGGGGTCT
*
93010013 ACACACCCATGTGGAGGCCAC
1 ACACGCCCATGTGGAGGCCAC
* * **
93010034 ACACGCTCGTGTGGAGGGGAC
1 ACACGCCCATGTGGAGGCCAC
*
93010055 ATACGCCCATGTG
1 ACACGCCCATGTG
93010068 AGCAGCTCGT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.15
Consensus pattern (21 bp):
ACACGCCCATGTGGAGGCCAC
Found at i:93010751 original size:7 final size:6
Alignment explanation
Indices: 93010730--93010760 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
93010720 GACTTCTTTC
93010730 AAAATA AAAATA AAAATA AAAATA ATAAATA
1 AAAATA AAAATA AAAATA AAAATA A-AAATA
93010761 TTTAAACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:93014304 original size:25 final size:25
Alignment explanation
Indices: 93014255--93014304 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
93014245 CTAGCCACTG
93014255 ACCCTACCTATAAATCTCGAAACTT
1 ACCCTACCTATAAATCTCGAAACTT
93014280 ACCCTACCTATAAATCTCGAAACTT
1 ACCCTACCTATAAATCTCGAAACTT
93014305 CTAACCCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.28
Consensus pattern (25 bp):
ACCCTACCTATAAATCTCGAAACTT
Found at i:93017693 original size:13 final size:13
Alignment explanation
Indices: 93017675--93017699 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93017665 TTAACAAACA
93017675 ATTTAAAACCTCT
1 ATTTAAAACCTCT
93017688 ATTTAAAACCTC
1 ATTTAAAACCTC
93017700 CAAATAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTTAAAACCTCT
Found at i:93017715 original size:19 final size:19
Alignment explanation
Indices: 93017691--93017733 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
93017681 AACCTCTATT
93017691 TAAAACCTCCAAATAGAAA
1 TAAAACCTCCAAATAGAAA
93017710 TAAAACCTCCAAATAGAAA
1 TAAAACCTCCAAATAGAAA
93017729 TAAAA
1 TAAAA
93017734 AATCTCTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.60, C:0.19, G:0.05, T:0.16
Consensus pattern (19 bp):
TAAAACCTCCAAATAGAAA
Found at i:93026765 original size:35 final size:35
Alignment explanation
Indices: 93026710--93026840 Score: 154
Period size: 35 Copynumber: 3.7 Consensus size: 35
93026700 TATGTTTCAA
** * * * *
93026710 TGTGTTTCGGTTGGACTAGCTTTTATGAGTATTTG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
* * * *
93026745 TGTGTTTTGAAGGGATTAGCTCTTATGAGCACTGG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
*
93026780 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTCG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
*
93026815 TGTATTTCGAATGGATTAGCTCTTAT
1 TGTGTTTCGAATGGATTAGCTCTTAT
93026841 TAGAATCTTT
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 80 1.00
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.43
Consensus pattern (35 bp):
TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
Found at i:93026831 original size:70 final size:70
Alignment explanation
Indices: 93026710--93026840 Score: 190
Period size: 70 Copynumber: 1.9 Consensus size: 70
93026700 TATGTTTCAA
* * * * * *
93026710 TGTGTTTCGGTTGGACTAGCTTTTATGAGTATTTGTGTGTTTTGAAGGGATTAGCTCTTATGAGC
1 TGTGTTTCGGATGGACTAGCTCTTATGAGCATTCGTGTATTTCGAAGGGATTAGCTCTTATGAGC
93026775 ACTGG
66 ACTGG
* *
93026780 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTCGTGTATTTCGAATGGATTAGCTCTTAT
1 TGTGTTTCGGATGGACTAGCTCTTATGAGCATTCGTGTATTTCGAAGGGATTAGCTCTTAT
93026841 TAGAATCTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 53 1.00
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.43
Consensus pattern (70 bp):
TGTGTTTCGGATGGACTAGCTCTTATGAGCATTCGTGTATTTCGAAGGGATTAGCTCTTATGAGC
ACTGG
Found at i:93030122 original size:40 final size:40
Alignment explanation
Indices: 93030067--93030244 Score: 266
Period size: 40 Copynumber: 4.5 Consensus size: 40
93030057 ATCATCAGAT
*
93030067 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * *
93030107 CAACCAAAACACACCAAACAAAAGCTCAGAAGAGCTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * *
93030147 CAACCTAAACACACCAAACAGAAGCTCTTAAGAGTTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * *
93030187 CAACTGAAACACGCCAAACAGAAGCTCGTAAGAGCTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
93030227 CAACCGAAACACACCAAA
1 CAACCGAAACACACCAAA
93030245 AAGAGAGTAT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.46, C:0.30, G:0.13, T:0.11
Consensus pattern (40 bp):
CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
Found at i:93037793 original size:40 final size:40
Alignment explanation
Indices: 93037668--93037819 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
93037658 TCGAATGATG
* * *
93037668 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
93037708 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* * **
93037748 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
93037789 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
93037820 TCGCTATATC
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:93044154 original size:15 final size:15
Alignment explanation
Indices: 93044134--93044164 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93044124 GATGGATATA
93044134 TGATGAGGAATGAAT
1 TGATGAGGAATGAAT
93044149 TGATGAGGAATGAAT
1 TGATGAGGAATGAAT
93044164 T
1 T
93044165 AAGTACTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (15 bp):
TGATGAGGAATGAAT
Found at i:93054688 original size:19 final size:19
Alignment explanation
Indices: 93054660--93054696 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93054650 TTAAAGGTTA
* *
93054660 AAATGGTAAAATAGTTAAT
1 AAATGATAAAATAATTAAT
93054679 AAATGATAAAATAATTAA
1 AAATGATAAAATAATTAA
93054697 ACACAAATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (19 bp):
AAATGATAAAATAATTAAT
Found at i:93056785 original size:16 final size:18
Alignment explanation
Indices: 93056764--93056797 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93056754 CCGTGTCCCT
93056764 CACAC-GGCCA-GGACAC
1 CACACGGGCCATGGACAC
93056780 CACACGGGCCATGGACAC
1 CACACGGGCCATGGACAC
93056798 GCCCGTGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.29, C:0.41, G:0.26, T:0.03
Consensus pattern (18 bp):
CACACGGGCCATGGACAC
Found at i:93058061 original size:49 final size:47
Alignment explanation
Indices: 93057913--93058117 Score: 161
Period size: 49 Copynumber: 4.3 Consensus size: 47
93057903 TTCTAAACAT
* * * *
93057913 GGTCTTACTCTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACA
1 GGTCTTACACTAGCTCTCAC-TATCTGAGGCGATGCCATGT-CCAGACA
* * * * * *
93057962 GGTCTTACA-TTG-ACACAC-CTC-AAGGCAATGCCATGTCCCAGACA
1 GGTCTTACACTAGCTCTCACTATCTGAGGCGATGCCATGT-CCAGACA
93058006 GGTCTTACACTAGCT-TGCA-TATCTTGAGGCTGATGCCATGTCCTAGACA
1 GGTCTTACACTAGCTCT-CACTATC-TGAGGC-GATGCCATGTCC-AGACA
* * * *
93058055 GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTTCCAGATA
1 GGTCTTACACTAGCTCTCAC-TATCTGAGGCGATGCCATG-TCCAGACA
93058104 GGTCTTACACTAGC
1 GGTCTTACACTAGC
93058118 ACATACATAT
Statistics
Matches: 124, Mismatches: 20, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
44 28 0.23
45 4 0.03
46 4 0.03
47 4 0.03
48 8 0.06
49 64 0.52
50 8 0.06
51 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (47 bp):
GGTCTTACACTAGCTCTCACTATCTGAGGCGATGCCATGTCCAGACA
Found at i:93064644 original size:13 final size:13
Alignment explanation
Indices: 93064626--93064651 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93064616 CTCAGCAGGA
93064626 ACACGCCCGTGTG
1 ACACGCCCGTGTG
93064639 ACACGCCCGTGTG
1 ACACGCCCGTGTG
93064652 CGATTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:93070194 original size:9 final size:9
Alignment explanation
Indices: 93070180--93070206 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
93070170 AAACCATCGA
93070180 CAAAATGAC
1 CAAAATGAC
93070189 CAAAATGAC
1 CAAAATGAC
93070198 CAAAATGAC
1 CAAAATGAC
93070207 ACTTCAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11
Consensus pattern (9 bp):
CAAAATGAC
Found at i:93071349 original size:6 final size:6
Alignment explanation
Indices: 93071340--93071365 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
93071330 AATTAATTAC
93071340 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
93071366 AAAAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:93075598 original size:21 final size:21
Alignment explanation
Indices: 93075574--93075629 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
93075564 GCAACTCCGT
* *
93075574 CACACAGGCATGTATCTCTGC
1 CACACAGCCATGTACCTCTGC
* **
93075595 CACACTGCCATGTACCTCTTT
1 CACACAGCCATGTACCTCTGC
*
93075616 CACACAGCTATGTA
1 CACACAGCCATGTA
93075630 GATCTCCTCA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (21 bp):
CACACAGCCATGTACCTCTGC
Found at i:93078594 original size:32 final size:32
Alignment explanation
Indices: 93078551--93078652 Score: 161
Period size: 32 Copynumber: 3.2 Consensus size: 32
93078541 TTTTAGAAAA
* *
93078551 CCATCTCAGAATCAATATCAGTTAGGCCTAGC
1 CCATTTCAGAATCAATATCAGTTGGGCCTAGC
*
93078583 CCATTTTAGAATCAATATCAGTTGGGCCTAGC
1 CCATTTCAGAATCAATATCAGTTGGGCCTAGC
*
93078615 CCA-TTCAGAATCAATATCTGTTGGGCCTAGC
1 CCATTTCAGAATCAATATCAGTTGGGCCTAGC
93078646 CCATTTC
1 CCATTTC
93078653 CATATCAAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
31 29 0.45
32 35 0.55
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (32 bp):
CCATTTCAGAATCAATATCAGTTGGGCCTAGC
Found at i:93078628 original size:31 final size:31
Alignment explanation
Indices: 93078551--93078650 Score: 155
Period size: 31 Copynumber: 3.2 Consensus size: 31
93078541 TTTTAGAAAA
*
93078551 CCATCTCAGAATCAATATCAGTTAGGCCTAGC
1 CCAT-TCAGAATCAATATCAGTTGGGCCTAGC
*
93078583 CCATTTTAGAATCAATATCAGTTGGGCCTAGC
1 CCA-TTCAGAATCAATATCAGTTGGGCCTAGC
*
93078615 CCATTCAGAATCAATATCTGTTGGGCCTAGC
1 CCATTCAGAATCAATATCAGTTGGGCCTAGC
93078646 CCATT
1 CCATT
93078651 TCCATATCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
31 31 0.49
32 31 0.49
33 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CCATTCAGAATCAATATCAGTTGGGCCTAGC
Found at i:93080842 original size:49 final size:47
Alignment explanation
Indices: 93080668--93080984 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
93080658 CCCTTCGGGA
* * * * * *
93080668 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
93080715 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
93080762 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
93080809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
93080858 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
93080907 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
93080954 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
93080985 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 158 0.64
48 2 0.01
49 88 0.35
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:93080864 original size:96 final size:94
Alignment explanation
Indices: 93080668--93080984 Score: 483
Period size: 96 Copynumber: 3.3 Consensus size: 94
93080658 CCCTTCGGGA
* * * * * *
93080668 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
93080733 CTTCACATTCATCACATTGGCCATTCGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
*
93080762 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
*
93080826 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
93080858 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
93080923 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
93080954 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
93080985 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 58 0.28
95 1 0.00
96 110 0.54
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:93084786 original size:43 final size:43
Alignment explanation
Indices: 93084725--93084945 Score: 370
Period size: 43 Copynumber: 5.1 Consensus size: 43
93084715 CCTTGCTCGA
** * *
93084725 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
93084768 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
93084811 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
93084854 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
93084897 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
93084940 ATCACC
1 ATCACC
93084946 AGCATGACTG
Statistics
Matches: 168, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 168 1.00
ACGTcount: A:0.33, C:0.32, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:93085119 original size:42 final size:42
Alignment explanation
Indices: 93084928--93085139 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 42
93084918 AGGCACGAAG
* * * * * * *
93084928 GCCCGAATACATATCACCAGCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
93084970 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
93085010 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
93085050 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
93085090 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
93085132 GCCCGGAT
1 GCCCGGAT
93085140 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
40 103 0.72
41 2 0.01
42 39 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:93087252 original size:49 final size:47
Alignment explanation
Indices: 93087078--93087394 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
93087068 CCCTTCGGGA
* * * * * *
93087078 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
93087125 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
93087172 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
93087219 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
93087268 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
93087317 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
93087364 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
93087395 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 158 0.64
48 2 0.01
49 88 0.35
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:93087274 original size:96 final size:94
Alignment explanation
Indices: 93087078--93087394 Score: 483
Period size: 96 Copynumber: 3.3 Consensus size: 94
93087068 CCCTTCGGGA
* * * * * *
93087078 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
93087143 CTTCACATTCATCACATTGGCCATTCGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
*
93087172 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
*
93087236 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
93087268 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
93087333 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
93087364 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
93087395 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 58 0.28
95 1 0.00
96 110 0.54
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:93093291 original size:57 final size:56
Alignment explanation
Indices: 93093192--93093344 Score: 220
Period size: 57 Copynumber: 2.7 Consensus size: 56
93093182 GTTATGTAGT
93093192 AATCAAATTGCTAAAAGATAATAT-CTCATAA-CAGTATCCTATAATATCCCATTAGG
1 AATCAAATTGCTAAAAGATAATATCCT-ATAATCA-TATCCTATAATATCCCATTAGG
* * *
93093248 AATCAAGTTGCTAAGAAAATAATATCCTATAATCATATTCTATAATATCCCATTAGG
1 AATCAAATTGCTAA-AAGATAATATCCTATAATCATATCCTATAATATCCCATTAGG
* *
93093305 AATCAAATTGCTAAAAGATAATATCCCATAATAATATCCT
1 AATCAAATTGCTAAAAGATAATATCCTATAATCATATCCT
93093345 TACAGAAGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
56 35 0.41
57 47 0.55
58 4 0.05
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (56 bp):
AATCAAATTGCTAAAAGATAATATCCTATAATCATATCCTATAATATCCCATTAGG
Found at i:93099366 original size:44 final size:43
Alignment explanation
Indices: 93099292--93099425 Score: 128
Period size: 44 Copynumber: 3.1 Consensus size: 43
93099282 CATAGGATTA
* *
93099292 CGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGAAAGACCACGTCTGGGACATTGGCAT
* * * *
93099335 CGATTTGTGATTTATGTGAAAGACTATGTCTGGGACATTGGCAT
1 CGATATGTGATTT-CGTGAAAGACCACGTCTGGGACATTGGCAT
* * ** * *
93099379 C-ATATATGATTTTGTTCAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATGTGATTTCGTGAAAGACCAC-GTCTGGGACATTGGCAT
93099421 CGATA
1 CGATA
93099426 GTTGATTACA
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 24 0.32
43 24 0.32
44 26 0.35
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
CGATATGTGATTTCGTGAAAGACCACGTCTGGGACATTGGCAT
Found at i:93106462 original size:56 final size:56
Alignment explanation
Indices: 93106375--93106481 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
93106365 ATATGTAATC
* * * * *
93106375 ACATATCGATGCCACTGTCTTAGACAGGGTCTTACTCGTACACATATATCGGAGTT
1 ACATATCGATGCCAATGTATAAAACAGGGTCTTACTCGCACACATATATCGGAGTT
93106431 ACATATCGATGCCAATGTATAAAAC-GTGGTCTTACTCGCACACATATATCG
1 ACATATCGATGCCAATGTATAAAACAG-GGTCTTACTCGCACACATATATCG
93106482 ATGCCATGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 1 0.02
56 44 0.98
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (56 bp):
ACATATCGATGCCAATGTATAAAACAGGGTCTTACTCGCACACATATATCGGAGTT
Found at i:93109815 original size:79 final size:82
Alignment explanation
Indices: 93109675--93109859 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
93109665 TCGAATGATG
* * *
93109675 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
93109739 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
93109755 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
93109817 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
93109835 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93109860 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:93109867 original size:40 final size:40
Alignment explanation
Indices: 93109676--93109867 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
93109666 CGAATGATGT
* * * * *
93109676 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
93109716 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
93109756 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
93109795 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
93109835 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
93109868 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:93109890 original size:79 final size:79
Alignment explanation
Indices: 93109675--93109892 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
93109665 TCGAATGATG
* * * * ** *
93109675 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
93109738 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
93109755 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
93109820 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
93109835 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
93109893 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:93117811 original size:40 final size:39
Alignment explanation
Indices: 93117767--93117878 Score: 120
Period size: 38 Copynumber: 2.8 Consensus size: 39
93117757 AAGTGACTAT
*
93117767 ATCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
93117807 ATCCGGGCTA-AGCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
* *
93117845 ACCCGGGTTA-AGTCCCGAAGGCATTCGTGCGAGT
1 ATCCGGGCTAGA-T-CCGAAGGCATTCGTGCGAGT
93117879 CACTATAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
38 33 0.55
40 27 0.45
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:93117891 original size:40 final size:40
Alignment explanation
Indices: 93117729--93117919 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
93117719 CGAATGATGT
* * * *
93117729 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * * *
93117769 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
93117809 CCGGGCTAAG--CCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
93117847 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
93117887 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
93117920 GTTATATCCG
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
38 33 0.27
40 82 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:93117891 original size:78 final size:80
Alignment explanation
Indices: 93117728--93117911 Score: 207
Period size: 78 Copynumber: 2.3 Consensus size: 80
93117718 TCGAATGATG
* * *
93117728 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
93117792 CGTGCGAGTTAATAAA
65 CGTGCGAGTCAATAAA
* **
93117808 TCCGGGCTAAG-CCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
93117870 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATA-AA
**
93117887 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
93117912 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.62
79 9 0.10
80 24 0.27
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:93123563 original size:707 final size:701
Alignment explanation
Indices: 93122214--93123621 Score: 2689
Period size: 707 Copynumber: 2.0 Consensus size: 701
93122204 CCTTAAAACG
93122214 ACCCTAGTCGGAATGTGGTTTCGGGACCACAAAAACCGAGGCATAAAAATAATTTGATATTTATT
1 ACCCTAGTCGGAATGTGGTTTCGGGACCACAAAAACCGAGGCATAAAAATAATTTGATATTTATT
93122279 TTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGCTTTAATTTAGAGTTATAAA
66 TTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGCTTTAATTTAGAGTTATAAA
93122344 TGTGAATTTCACTAGAAAGGACCTAGTAGAAAACTTTGAAAGTATGATGGGGAATGTGTGATGAC
131 TGTGAATTTCACTAGAAAGGACCTAGTAGAAAACTTTGAAAGTATGATGGGGAATGTGTGATGAC
93122409 TAATTAAAGCATGCATGCAAAACAATGGCCTTGCATGTCAAATACCCTCTTTTTACAAGGATGGC
196 TAATTAAAGCATGCATGCAAAACAATGGCCTTGCATGTCAAATACCCTCTTTTTACAAGGATGGC
93122474 CGGCCATGACAAAGAATATGGGCAAAACATGTCATAGACATGTTTTGTTGGTGAATCATGGGTGA
261 CGGCCATGACAAAGAATATGGGCAAAACATGTCATAGACATGTTTTGTTGGTGAATCATGGGTGA
93122539 AAAATAAAAAATAGCATGGGTAATAAAGAAATGGAAAAAGAAAAAAATGGTCTCATGCCCCCATT
326 AAAATAAAAAATAGCATGGGTAATAAAGAAATGGAAAAAGAAAAAAATGGTCTCATGCCCCCATT
93122604 GCCGTGTATTGAGGAAGAGAAAAGAAAAAAATTTGTTCATCCATTTTTCATTCTCTCTTGACCGA
391 GCCGTGTATTGAGGAAGAGAAAAGAAAAAAATTTGTTCATCCATTTTTCATTCTCTCTTGACCGA
93122669 AAATACTAGAGGGGAAGGGAGGAATTTTGCTTCATGCTTGGTTTGGAAGAGGATTAGGAAGAGGT
456 AAATACTAGAGGGGAAGGGAGGAATTTTGCTTCATGCTTGGTTTGGAAGAGGATTAGGAAGAGGT
93122734 TTGGCTATACTTGCATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCATGTTTT
521 TTGGCTATACTTGCATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCATGTTTT
93122799 TAGTTGATAGCTTGATGCTCTTGTTAGCCCATGGTTCAAACCTTTGTTATATCATGGGGATGGTA
586 TAGTTGATAGCTTGATGCTCTTGTTAGCCCATGGTTCAAACCTTTGTTATATCATGGGGATGGTA
93122864 TTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGC
651 TTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGC
93122915 ACCCTAGTCGGAATGTGGTTTCGGGA-CACAAAAA-CGAGGCATAAAAATAATTTGATATTTATT
1 ACCCTAGTCGGAATGTGGTTTCGGGACCACAAAAACCGAGGCATAAAAATAATTTGATATTTATT
93122978 TTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGCTTTAATTTAGAGTTATAAA
66 TTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGCTTTAATTTAGAGTTATAAA
93123043 TGTGAATTTCACTAGAAAGGACCTAGTAG-AAACTTTGAAAGTATGATGGGGGAATGTGTGATGA
131 TGTGAATTTCACTAGAAAGGACCTAGTAGAAAACTTTGAAAGTATGAT-GGGGAATGTGTGATGA
93123107 CTAATTAAAGCATGCATGCAAAACAATGGCCTTGCATGTCAAATACCCTCTTTTTACAAGTGATG
195 CTAATTAAAGCATGCATGCAAAACAATGGCCTTGCATGTCAAATACCCTCTTTTTACAAG-GATG
93123172 GCCGGCCATGACAAAGAAATATGGGCAAAACATGTCATAGACATGTTTTGTTGGTGAATCATGGG
259 GCCGGCCATGACAAAG-AATATGGGCAAAACATGTCATAGACATGTTTTGTTGGTGAATCATGGG
*
93123237 TGAAAAAATAAATTAATGAGCATGGGTAATAAAGAAATGG-AAAAGAAAAAAATGGTCTCATGCA
323 TG-AAAAATAAA-AAAT-AGCATGGGTAATAAAGAAATGGAAAAAGAAAAAAATGGTCTCATGC-
93123301 TGCCCCATTGCCGTGTATTGAGGAAGAGAAAAGAAAAAAAATTTGTTCATCCATTTTTCATTCTC
384 --CCCCATTGCCGTGTATTGAGGAAGAGAAAAG-AAAAAAATTTGTTCATCCATTTTTCATTCTC
93123366 TCTTGACCGAAAATACTAGAGGGGAAGGGAGGAATTTTGCTTCATGCTTGGTTTGGAAGAGGATT
446 TCTTGACCGAAAATACTAGAGGGGAAGGGAGGAATTTTGCTTCATGCTTGGTTTGGAAGAGGATT
93123431 AGGAAGAGGTTTGGCTATACTTGCATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCA
511 AGGAAGAGGTTTGGCTATACTTGCATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCA
93123496 TGCATGTTTTTAGTTGATAGCTTGATGCTCTTGTTAGCCCATGGTTCAAACCTTTGTTATATCAT
576 TGCATGTTTTTAGTTGATAGCTTGATGCTCTTGTTAGCCCATGGTTCAAACCTTTGTTATATCAT
93123561 GGGGATGGTATTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGC
641 GGGGATGGTATTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGC
93123622 TTGCTAATGA
Statistics
Matches: 696, Mismatches: 1, Indels: 14
0.98 0.00 0.02
Matches are distributed among these distances:
698 18 0.03
699 199 0.29
700 28 0.04
701 76 0.11
702 9 0.01
703 26 0.04
704 22 0.03
706 31 0.04
707 287 0.41
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (701 bp):
ACCCTAGTCGGAATGTGGTTTCGGGACCACAAAAACCGAGGCATAAAAATAATTTGATATTTATT
TTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGCTTTAATTTAGAGTTATAAA
TGTGAATTTCACTAGAAAGGACCTAGTAGAAAACTTTGAAAGTATGATGGGGAATGTGTGATGAC
TAATTAAAGCATGCATGCAAAACAATGGCCTTGCATGTCAAATACCCTCTTTTTACAAGGATGGC
CGGCCATGACAAAGAATATGGGCAAAACATGTCATAGACATGTTTTGTTGGTGAATCATGGGTGA
AAAATAAAAAATAGCATGGGTAATAAAGAAATGGAAAAAGAAAAAAATGGTCTCATGCCCCCATT
GCCGTGTATTGAGGAAGAGAAAAGAAAAAAATTTGTTCATCCATTTTTCATTCTCTCTTGACCGA
AAATACTAGAGGGGAAGGGAGGAATTTTGCTTCATGCTTGGTTTGGAAGAGGATTAGGAAGAGGT
TTGGCTATACTTGCATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCATGTTTT
TAGTTGATAGCTTGATGCTCTTGTTAGCCCATGGTTCAAACCTTTGTTATATCATGGGGATGGTA
TTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGC
Found at i:93124676 original size:38 final size:38
Alignment explanation
Indices: 93124629--93124725 Score: 124
Period size: 38 Copynumber: 2.5 Consensus size: 38
93124619 GGACTAGGAT
*
93124629 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-
1 CCGAAGGCATTCGTGCGAGTT-ATAAACCCGGGCTAAGC
* * * *
93124667 CCGAAGGCATTTGTGCAAGTTCTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATAAACCCGGGCTAAG-C
93124706 CCGAAGGCATTCGTGCGAGT
1 CCGAAGGCATTCGTGCGAGT
93124726 CACTATAACC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
37 13 0.26
38 19 0.38
39 18 0.36
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (38 bp):
CCGAAGGCATTCGTGCGAGTTATAAACCCGGGCTAAGC
Found at i:93124749 original size:39 final size:39
Alignment explanation
Indices: 93124628--93124765 Score: 131
Period size: 39 Copynumber: 3.6 Consensus size: 39
93124618 CGGACTAGGA
* * * *
93124628 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAG
* * *
93124667 -CCGAAGGCATTTGTGCAAGT-TCTAAACCCGGG-TTAAG
1 TCCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTT-AG
*
93124704 TCCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCG
1 T-CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGGCTTAG
* *
93124744 TCCGAAGGCATTTGAGCGAGTC
1 TCCGAAGGCATTCGTGCGAGTC
93124766 GTTATATCCG
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
36 1 0.01
37 11 0.14
38 18 0.22
39 37 0.46
40 10 0.12
41 4 0.05
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAG
Found at i:93132702 original size:40 final size:39
Alignment explanation
Indices: 93132658--93132808 Score: 121
Period size: 40 Copynumber: 3.8 Consensus size: 39
93132648 AAGTGACTAT
*
93132658 ATCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
93132698 ATCCGGGCTA-AGCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
93132736 ACCCGGGTTA-AGTCCCGAAGGCATTCGTGCGAGTCACTATA
1 ATCCGGGCTAGA-T-CCGAAGGCATTCGTGCGAGTTAATA-A
* * *
93132777 A-CCGGGCTTCG-TCCGAAGGCATTTGAGCGAGT
1 ATCCGGGC-TAGATCCGAAGGCATTCGTGCGAGT
93132809 CGTTATATCC
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
38 33 0.36
39 18 0.20
40 37 0.41
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:93132719 original size:38 final size:39
Alignment explanation
Indices: 93132672--93132769 Score: 135
Period size: 38 Copynumber: 2.5 Consensus size: 39
93132662 GGACTAGGAT
*
93132672 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGC
* * * *
93132710 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG-C
93132750 CCGAAGGCATTCGTGCGAGT
1 CCGAAGGCATTCGTGCGAGT
93132770 CACTATAACC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 33 0.65
40 18 0.35
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGC
Found at i:93132754 original size:78 final size:81
Alignment explanation
Indices: 93132619--93132801 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 81
93132609 TCGAATGATG
* * *
93132619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
93132683 CGTGCGAGTTAATA-AA
65 CGTGCGAGTCAATATAA
* **
93132699 TCCGGGCTAAG-CCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
93132761 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATATAA
**
93132778 -CCGGGCTTCGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
93132802 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 55 0.62
79 22 0.25
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATATAA
Found at i:93132832 original size:78 final size:78
Alignment explanation
Indices: 93132671--93132834 Score: 179
Period size: 78 Copynumber: 2.1 Consensus size: 78
93132661 CGGACTAGGA
* * *
93132671 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCGAAGGCATTTGTGCAAGTTACTAA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCGAAGGCATTTGAGCAAGTCACTAA
*
93132736 ACCCGGGTTAAGT
66 ACCCGGGTTAAAT
* * ** * **
93132749 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCGAAGGCATTTGAGCGAGTCGTT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCGAAGGCATTTGAGCAAGTCACT
* *
93132813 ATATCC-GGTTAAAT
64 AAACCCGGGTTAAAT
93132827 TCCGAAGG
1 TCCGAAGG
93132835 TACGTGATTC
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
78 45 0.64
79 25 0.36
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (78 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCGAAGGCATTTGAGCAAGTCACTAA
ACCCGGGTTAAAT
Found at i:93135052 original size:3 final size:3
Alignment explanation
Indices: 93135036--93135092 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
93135026 TTTCTGACAA
* *
93135036 TTC TT- TTC -TC TTC TTC TT- TTC TCC TCTC TTC ATC TAT- TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC T-TC TTC TTC
93135079 TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TT
93135093 TTCCTCTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.16
3 34 0.77
4 3 0.07
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:93136348 original size:28 final size:28
Alignment explanation
Indices: 93136308--93136415 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 28
93136298 GGAGGAAGCG
* *
93136308 TTCTGGTGGCTCTTCCACAAATATCGGT
1 TTCTGGTGGCTCTGCCACAAATATCGAT
* *
93136336 TTCTAGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCGAT
* *
93136364 TTCTGGTGGCCCTGCCACAATTATCTG-T
1 TTCTGGTGGCTCTGCCACAAATATC-GAT
* * *
93136392 ATCTGGTGACTCTGTCAC-AATATC
1 TTCTGGTGGCTCTGCCACAAATATC
93136416 TGTTCTGGCA
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 5 0.08
28 61 0.92
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCGAT
Found at i:93136405 original size:56 final size:55
Alignment explanation
Indices: 93136308--93136416 Score: 137
Period size: 56 Copynumber: 2.0 Consensus size: 55
93136298 GGAGGAAGCG
* * * *
93136308 TTCTGGTGGCTCTTCCACAAATATCGGTTTCTAGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCCCTGCCACAAATATCGGTATCTAGTGACTCTGCCAC-AATATCTAT
* * * *
93136364 TTCTGGTGGCCCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCCCTGCCACAAATATCGGTATCTAGTGACTCTGCCACAATATCT
93136417 GTTCTGGCAG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
55 7 0.16
56 38 0.84
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (55 bp):
TTCTGGTGGCCCTGCCACAAATATCGGTATCTAGTGACTCTGCCACAATATCTAT
Found at i:93142267 original size:18 final size:18
Alignment explanation
Indices: 93142244--93142281 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
93142234 TGGCCGAATG
93142244 TACATATACATATTTTGA
1 TACATATACATATTTTGA
93142262 TACATATACATATTTTGA
1 TACATATACATATTTTGA
93142280 TA
1 TA
93142282 AACCATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
TACATATACATATTTTGA
Found at i:93143861 original size:29 final size:29
Alignment explanation
Indices: 93143829--93143934 Score: 142
Period size: 29 Copynumber: 3.7 Consensus size: 29
93143819 ATACCCTCCG
** * *
93143829 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
93143858 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
93143887 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
93143916 AGCAT-GCACACTTAGTGCC
1 AGC-TCGCACACTTAGTGCC
93143935 GATCTCGTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:93143877 original size:58 final size:58
Alignment explanation
Indices: 93143813--93143934 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
93143803 CCGCACACAC
* * * * *
93143813 AGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
** **
93143871 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
93143929 AGTGCC
1 AGTGCC
93143935 GATCTCGTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
58 51 0.94
59 3 0.06
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.27
Consensus pattern (58 bp):
AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
Found at i:93151595 original size:93 final size:93
Alignment explanation
Indices: 93151488--93151658 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
93151478 GCCCATAAGT
*
93151488 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93151553 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
93151581 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93151646 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93151659 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:93151674 original size:46 final size:46
Alignment explanation
Indices: 93151480--93151660 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
93151470 TGTAACCCGC
* *
93151480 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
93151526 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
93151576 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
93151619 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
93151661 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:93156054 original size:68 final size:68
Alignment explanation
Indices: 93155979--93156126 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
93155969 CATCATGTGT
* * * *
93155979 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
93156042 TGTAG
64 TGTAG
* ** * *
93156047 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
93156110 GTAG
65 GTAG
93156114 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
93156127 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 24 0.36
65 3 0.05
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:93159563 original size:48 final size:48
Alignment explanation
Indices: 93159488--93159718 Score: 215
Period size: 48 Copynumber: 4.9 Consensus size: 48
93159478 ACTTTAGTAG
* * *
93159488 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
93159536 GATGCCAATGTCATGTCCCAGACATGGTCTTATATGGGATCATACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC--ACATATC
* * * * * *
93159586 GAAGCCGAT---A-G-CCCA-ACTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATATC
* * * * *
93159629 AATGCCACTGCCATGTCCTAGACATGGTCTTACATGGGATCATATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
93159677 GATGCCTATGCCATGTCCCGGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
93159719 TGCATATCCC
Statistics
Matches: 144, Mismatches: 28, Indels: 22
0.74 0.14 0.11
Matches are distributed among these distances:
43 10 0.07
44 2 0.01
45 17 0.12
46 3 0.02
47 3 0.02
48 93 0.65
49 2 0.01
50 14 0.10
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:93164685 original size:44 final size:46
Alignment explanation
Indices: 93164629--93164747 Score: 136
Period size: 44 Copynumber: 2.6 Consensus size: 46
93164619 GCGTGCTGAT
93164629 GCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-GCCAAA
1 GCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTCAGGCCAAA
* * * * * *
93164673 GCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTC-AGGCCAAA
93164720 GCATGTCCCAGACATGGTCTTACACTAG
1 GCATGTCCCAGACAT-GTCTTACACTAG
93164748 TTATCATAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
43 5 0.08
44 27 0.44
46 1 0.02
47 18 0.29
48 11 0.18
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTCAGGCCAAA
Found at i:93173316 original size:50 final size:51
Alignment explanation
Indices: 93173234--93173362 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
93173224 GACCATGGCA
* *
93173234 ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
* *
93173285 A-AAGTGATAAGCGATAGCTTCAGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
93173335 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
93173363 GTGATCAGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:93173376 original size:31 final size:31
Alignment explanation
Indices: 93173338--93173517 Score: 247
Period size: 31 Copynumber: 5.8 Consensus size: 31
93173328 ACAAATGACA
* *
93173338 AGTGAAAAGTGGTAGCTTCAGCTACGTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
93173369 AGTGAAAAATGGTAGCTTCTGCTACGC-GATC
1 AGTGAAAAGTGGTAGCTTCGGCTAC-CTGATC
*
93173400 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
93173431 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
93173462 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
**
93173493 AGTGAGTAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
93173518 AAGTGACAAG
Statistics
Matches: 132, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
30 2 0.02
31 129 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:93173612 original size:47 final size:46
Alignment explanation
Indices: 93173542--93173706 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 46
93173532 AAGTGACTTC
* ** *
93173542 CGTATAAGACCATATCTAGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTAAGATATATGATA
* * *
93173588 CTGTATAAGACCATATCTGGGATATGGCATCAGTAAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTAAGATATATGATA
* * *
93173635 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTAAGATATATG-ATA
* * * *
93173677 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
93173707 ATTATGTGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.30
46 27 0.26
47 39 0.38
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTAAGATATATGATA
Found at i:93173660 original size:46 final size:43
Alignment explanation
Indices: 93173593--93173752 Score: 157
Period size: 42 Copynumber: 3.7 Consensus size: 43
93173583 TGCTACTGTA
* * *
93173593 TAAGACCATATCTGGGATATGGCATCAGTAAGATATGTGAT-TCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAG--AGATATG-AATAT-GTG
*
93173639 TAAGACCATAGCTGGGCTATGGCATC-GATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
** * *
93173681 TAAGACCATAGCTGGGCTATGGCATCA-TTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
* **
93173723 TAAGACCATAGTTGAACTATGGCATC-GAGA
1 TAAGACCATAGCTGGGCTATGGCATCAGAGA
93173753 AAACGAAGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 67 0.68
43 7 0.07
45 1 0.01
46 24 0.24
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
Found at i:93173694 original size:42 final size:43
Alignment explanation
Indices: 93173636--93173750 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
93173626 TATGTGATTC
*
93173636 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
93173678 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
93173720 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
93173751 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:93173958 original size:26 final size:26
Alignment explanation
Indices: 93173922--93173974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
93173912 GAATGTACTG
*
93173922 TCCATATGTATTGATAATTCAAATGT
1 TCCATACGTATTGATAATTCAAATGT
*
93173948 TCCATACGTATTGATAATTCAGATGT
1 TCCATACGTATTGATAATTCAAATGT
93173974 T
1 T
93173975 TTAATGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (26 bp):
TCCATACGTATTGATAATTCAAATGT
Found at i:93178025 original size:49 final size:47
Alignment explanation
Indices: 93177908--93178224 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
93177898 GATTTTACGC
* * *
93177908 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
93177955 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
93178002 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
93178051 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
93178100 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
93178147 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
93178194 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
93178225 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:93178032 original size:96 final size:93
Alignment explanation
Indices: 93177908--93178224 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
93177898 GATTTTACGC
93177908 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
93177973 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
93178002 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
93178067 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
93178100 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
93178165 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
93178194 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
93178225 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:93180226 original size:42 final size:41
Alignment explanation
Indices: 93180162--93180373 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
93180152 CTCGACGATG
* * *
93180162 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
93180204 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
93180244 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
93180284 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
93180324 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
93180366 ATTCGGGC
1 ATCCGGGC
93180374 CTTCGTGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:93180405 original size:43 final size:43
Alignment explanation
Indices: 93180356--93180576 Score: 370
Period size: 43 Copynumber: 5.1 Consensus size: 43
93180346 CAGTCATGCT
93180356 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
93180399 AGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
* *
93180442 GGTGATATGTATTCGGGTCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
93180485 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
* * **
93180528 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
93180571 GGTGAT
1 GGTGAT
93180577 TCGAGCAAGG
Statistics
Matches: 168, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 168 1.00
ACGTcount: A:0.14, C:0.21, G:0.32, T:0.33
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
Found at i:93184105 original size:49 final size:47
Alignment explanation
Indices: 93183988--93184304 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
93183978 GATTTTACGC
* * *
93183988 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
93184035 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
93184082 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
93184131 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
93184180 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
93184227 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
93184274 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
93184305 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:93184112 original size:96 final size:93
Alignment explanation
Indices: 93183988--93184304 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
93183978 GATTTTACGC
93183988 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
93184053 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
93184082 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
93184147 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
93184180 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
93184245 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
93184274 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
93184305 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:93185782 original size:94 final size:93
Alignment explanation
Indices: 93185539--93185896 Score: 302
Period size: 94 Copynumber: 3.8 Consensus size: 93
93185529 GATATATTGC
* * *
93185539 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTAATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTAATGCATGTCCCA
** *
93185603 GACATGTCTTACACTAGCA-CAACTCT-TAGC
63 GACATGTCTTACACTAGCACCATGTCTGT-GT
* * * * * * *
93185633 CGAAG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCCCT-GTCAAGGCTGATGCATGTCTCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATAGT-ATGGCTAATGCATGTCCCAG
*
93185695 ACATGTCTTACACTGGCACTCATGTCTGTGT
64 ACATGTCTTACACTAGCAC-CATGTCTGTGT
* * * * *
93185726 CGATGCCATGTCCCAGATATGGTCTTACATTGGCTATCATAGTATGGCTGACGCATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTAATGCATGTCCCAGAC
* *
93185791 ATGTCTTACACTAGC-CCTTGTTTG-GAT
66 ATGTCTTACACTAGCACCATGTCTGTG-T
* * * * * *
93185818 ACCGATGTCATGTCCCAGACATGGTCTTACACAT-GCTCTCATAATGTGGCCAAAGCATGTCCCA
1 --CGATGCCATGTCCCAGACATGGTCTTACAC-TGGCTATCATAGTATGGCTAATGCATGTCCCA
*
93185882 GACATGTCTTTCACT
63 GACATGTCTTACACT
93185897 GGCGTAAAAA
Statistics
Matches: 214, Mismatches: 37, Indels: 26
0.77 0.13 0.09
Matches are distributed among these distances:
91 33 0.15
92 23 0.11
93 25 0.12
94 115 0.54
95 18 0.08
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTAATGCATGTCCCAGAC
ATGTCTTACACTAGCACCATGTCTGTGT
Found at i:93186280 original size:30 final size:30
Alignment explanation
Indices: 93186246--93186326 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
93186236 CATCTTTGGT
93186246 AAAATGACCATTTTGCCCC-AAGACTTTGAC
1 AAAATGACCATTTTGCCCCTAA-ACTTTGAC
93186276 AAAATGACCATTTTGCCCCTAAACTTTGAC
1 AAAATGACCATTTTGCCCCTAAACTTTGAC
93186306 AAAATGACCATTTTGCCCCTA
1 AAAATGACCATTTTGCCCCTA
93186327 TGCTCGAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 48 0.96
31 2 0.04
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAAACTTTGAC
Found at i:93201109 original size:19 final size:18
Alignment explanation
Indices: 93201068--93201102 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93201058 TTCTTGTCAA
* *
93201068 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTGTAT
93201086 AAAATAATTAAATTGTA
1 AAAATAATTAAATTGTA
93201103 CTTAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAATTGTAT
Found at i:93201145 original size:12 final size:11
Alignment explanation
Indices: 93201121--93201160 Score: 57
Period size: 10 Copynumber: 3.7 Consensus size: 11
93201111 ATGAAAATTT
93201121 TTAA-TTTTAA
1 TTAATTTTTAA
93201131 TTAATTTTATAA
1 TTAATTTT-TAA
93201143 TTAATTTTT-A
1 TTAATTTTTAA
93201153 TTAATTTT
1 TTAATTTT
93201161 GGTTATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 13 0.46
11 4 0.14
12 11 0.39
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:93201733 original size:19 final size:19
Alignment explanation
Indices: 93201705--93201748 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
93201695 CTCATTTACA
*
93201705 TCTCTTCTCTCACAATTCT
1 TCTCTCCTCTCACAATTCT
** *
93201724 TCTCTCCTCTTTCAATTTT
1 TCTCTCCTCTCACAATTCT
93201743 TCTCTC
1 TCTCTC
93201749 ATCTTTTGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.52
Consensus pattern (19 bp):
TCTCTCCTCTCACAATTCT
Found at i:93201753 original size:19 final size:19
Alignment explanation
Indices: 93201717--93201754 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
93201707 TCTTCTCTCA
*
93201717 CAATTCTTCTCTCCTCTTT
1 CAATTCTTCTCTCATCTTT
*
93201736 CAATTTTTCTCTCATCTTT
1 CAATTCTTCTCTCATCTTT
93201755 TGCATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (19 bp):
CAATTCTTCTCTCATCTTT
Found at i:93203307 original size:21 final size:20
Alignment explanation
Indices: 93203267--93203306 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
93203257 TTGGGCCGTA
*
93203267 AGCCCATTGGGCCCATTTTT
1 AGCCCATCGGGCCCATTTTT
93203287 AGCCCATCGAGGCCC-TTTTT
1 AGCCCATCG-GGCCCATTTTT
93203307 TCGAAGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.15, C:0.33, G:0.20, T:0.33
Consensus pattern (20 bp):
AGCCCATCGGGCCCATTTTT
Found at i:93204793 original size:20 final size:20
Alignment explanation
Indices: 93204770--93204807 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93204760 CACATCCAAA
*
93204770 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
93204790 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
93204808 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:93213350 original size:19 final size:18
Alignment explanation
Indices: 93213309--93213343 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93213299 TTCTTGTCAA
* *
93213309 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTGTAT
93213327 AAAATAATTAAATTGTA
1 AAAATAATTAAATTGTA
93213344 CTTAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAATTGTAT
Found at i:93220572 original size:19 final size:19
Alignment explanation
Indices: 93220544--93220580 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93220534 TTAAAGGTTA
* *
93220544 AAATGCTAAAATAGTTAAT
1 AAATGATAAAATAATTAAT
93220563 AAATGATAAAATAATTAA
1 AAATGATAAAATAATTAA
93220581 AACAAAGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (19 bp):
AAATGATAAAATAATTAAT
Found at i:93224359 original size:68 final size:70
Alignment explanation
Indices: 93224287--93224484 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
93224277 ACACCCTGTA
* * * *
93224287 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
93224349 ATAAAT
65 ATAAAT
*
93224355 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
93224420 ATAAAT
65 ATAAAT
*
93224426 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
93224485 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:93224398 original size:41 final size:41
Alignment explanation
Indices: 93224353--93224470 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93224343 TGAAAGATAA
93224353 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93224394 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93224424 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93224465 ATGTAG
1 ATGTAG
93224471 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93224410 original size:71 final size:71
Alignment explanation
Indices: 93224321--93224484 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93224311 GAGATGTATC
93224321 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93224386 AGGACA
66 AGGACA
93224392 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93224457 AGGACA
66 AGGACA
93224463 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93224485 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93230144 original size:36 final size:36
Alignment explanation
Indices: 93230097--93230170 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
93230087 AGCTAAGACT
93230097 TATTTGAAGTAGTAGTTAGAGCTTCTATCGGTCATC
1 TATTTGAAGTAGTAGTTAGAGCTTCTATCGGTCATC
93230133 TATTTGAAGTAGTAGTTAGAGCTTCTATCGGTCATC
1 TATTTGAAGTAGTAGTTAGAGCTTCTATCGGTCATC
93230169 TA
1 TA
93230171 GATGGCGCGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.39
Consensus pattern (36 bp):
TATTTGAAGTAGTAGTTAGAGCTTCTATCGGTCATC
Found at i:93233324 original size:16 final size:16
Alignment explanation
Indices: 93233303--93233354 Score: 50
Period size: 19 Copynumber: 3.0 Consensus size: 16
93233293 ACAATCTGAC
93233303 GAAAAAACACAAAAAAG
1 GAAAAAA-ACAAAAAAG
*
93233320 GAAAAAAATAAAAAAG
1 GAAAAAAACAAAAAAG
*
93233336 AATCAACAAAACAAAAAAG
1 GA--AA-AAAACAAAAAAG
93233355 TAGAAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 9 0.31
17 7 0.24
18 2 0.07
19 11 0.38
ACGTcount: A:0.77, C:0.10, G:0.10, T:0.04
Consensus pattern (16 bp):
GAAAAAAACAAAAAAG
Found at i:93234236 original size:13 final size:12
Alignment explanation
Indices: 93234211--93234245 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
93234201 ACATAATTTT
*
93234211 TTTTTAAATTCA
1 TTTTTAAAATCA
93234223 TTTTTAATAATCA
1 TTTTTAA-AATCA
93234236 TTTTTAAAAT
1 TTTTTAAAAT
93234246 ATGAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTTTAAAATCA
Found at i:93238065 original size:21 final size:20
Alignment explanation
Indices: 93238039--93238077 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
93238029 ATGTAATAAT
93238039 ATATATTAAAACTATTAATAC
1 ATATATT-AAACTATTAATAC
*
93238060 ATATATTTAACTATTAAT
1 ATATATTAAACTATTAAT
93238078 TGGTCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATATTAAACTATTAATAC
Found at i:93250239 original size:51 final size:51
Alignment explanation
Indices: 93250168--93250284 Score: 225
Period size: 51 Copynumber: 2.3 Consensus size: 51
93250158 CTGATCACAT
93250168 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAACCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAACCTACCACTTATCAC
*
93250219 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAACCTACCACTTATCAC
93250270 TTATCACTTGTCACT
1 TTATCACTTGTCACT
93250285 TGTCACTTGT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAACCTACCACTTATCAC
Found at i:93250272 original size:7 final size:7
Alignment explanation
Indices: 93250260--93250310 Score: 66
Period size: 7 Copynumber: 7.3 Consensus size: 7
93250250 CTAAAGCTAC
93250260 CACTTAT
1 CACTTAT
93250267 CACTTAT
1 CACTTAT
*
93250274 CACTTGT
1 CACTTAT
*
93250281 CACTTGT
1 CACTTAT
*
93250288 CACTTGT
1 CACTTAT
93250295 CACTTAT
1 CACTTAT
*
93250302 CACTGAT
1 CACTTAT
93250309 CA
1 CA
93250311 GATAAGTGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (7 bp):
CACTTAT
Found at i:93250283 original size:14 final size:14
Alignment explanation
Indices: 93250260--93250305 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
93250250 CTAAAGCTAC
*
93250260 CACTTATCACTTAT
1 CACTTGTCACTTAT
*
93250274 CACTTGTCACTTGT
1 CACTTGTCACTTAT
93250288 CACTTGTCACTTAT
1 CACTTGTCACTTAT
93250302 CACT
1 CACT
93250306 GATCAGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.22, C:0.30, G:0.07, T:0.41
Consensus pattern (14 bp):
CACTTGTCACTTAT
Found at i:93250305 original size:72 final size:72
Alignment explanation
Indices: 93250209--93250349 Score: 228
Period size: 72 Copynumber: 2.0 Consensus size: 72
93250199 CTAAACCTAC
* *
93250209 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTAT
1 CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTATCACTTAT
93250274 CACTTGT
66 CACTTGT
* * * *
93250281 CACTTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAACTAAGGCTACCACTTATCACTTGT
1 CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTATCACTTAT
93250346 CACT
66 CACT
93250350 GATCAGAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (72 bp):
CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTATCACTTAT
CACTTGT
Found at i:93281823 original size:19 final size:19
Alignment explanation
Indices: 93281788--93281825 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
93281778 AATCACAACA
*
93281788 TATCTCATTTTTCATTCAC
1 TATCTCATTTTACATTCAC
93281807 TATCTCA-TTTACAATTCAC
1 TATCTCATTTTAC-ATTCAC
93281826 ATACAATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (19 bp):
TATCTCATTTTACATTCAC
Found at i:93283012 original size:17 final size:17
Alignment explanation
Indices: 93282979--93283024 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
93282969 TATTAATATA
*
93282979 ATTATTATCATTATAACT
1 ATTATTATTA-TATAACT
93282997 ATTATTATTATATAACT
1 ATTATTATTATATAACT
*
93283014 ATTATCATTAT
1 ATTATTATTAT
93283025 TATATAACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATTATTATATAACT
Found at i:93300130 original size:32 final size:32
Alignment explanation
Indices: 93300089--93300179 Score: 105
Period size: 30 Copynumber: 2.9 Consensus size: 32
93300079 TTTTTCATTC
*
93300089 AAGTTGGTATTTGTTATCATTTCACATAATTA
1 AAGTTGGTATTTGTTATCATTTCACAAAATTA
* *
93300121 AAGTTGGTATTTG--CTCATTTTACAAAATTA
1 AAGTTGGTATTTGTTATCATTTCACAAAATTA
** * *
93300151 AAGTTAATATCTGTTATAATTTCACAAAA
1 AAGTTGGTATTTGTTATCATTTCACAAAA
93300180 CCACACATTT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
30 24 0.50
32 24 0.50
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (32 bp):
AAGTTGGTATTTGTTATCATTTCACAAAATTA
Found at i:93307115 original size:42 final size:43
Alignment explanation
Indices: 93307038--93307176 Score: 142
Period size: 43 Copynumber: 3.3 Consensus size: 43
93307028 TCCCGGACGT
* * * * *
93307038 GGTCTTACATGTAATTCA-ATATCGATGCCTCTATCCTAGACAG
1 GGTCTTACACGTAAATCACATATCGATGCC-GTATCCCAGACAC
*
93307081 GGTCTTACACG-AAATCACATA-CGATGCCGATATCCCAGACAT
1 GGTCTTACACGTAAATCACATATCGATGCCG-TATCCCAGACAC
* * *
93307123 GGTCTTATACGTAAATCTCA-ATCGAGGCCTGTATCCCAGACAC
1 GGTCTTACACGTAAATCACATATCGATGCC-GTATCCCAGACAC
93307166 GGTCTTACACG
1 GGTCTTACACG
93307177 ATGTATCAGA
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
42 33 0.41
43 47 0.58
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAAATCACATATCGATGCCGTATCCCAGACAC
Found at i:93309178 original size:77 final size:77
Alignment explanation
Indices: 93309096--93309260 Score: 226
Period size: 77 Copynumber: 2.1 Consensus size: 77
93309086 GAGTTATACC
* * * *
93309096 GATTTGGCTTCAAG-CCATGAATATCGACTGATTTGGCTTTGGG-TCATGATATCAGTACTTCGG
1 GATTTGGCTTC-AGTCCACGAATATCAACTGATTTGGCTTCGGGCT-ATGATATCAGTACTTCAG
*
93309159 GTATAAGTTACCTT
64 ATATAAGTTACCTT
* * *
93309173 GATTTGGCTTCGGTCCACGACTATCAATTGATTTGGCTTCGGGCTATGATATCAGTACTTCAGAT
1 GATTTGGCTTCAGTCCACGAATATCAACTGATTTGGCTTCGGGCTATGATATCAGTACTTCAGAT
93309238 ATAAGTTACCTT
66 ATAAGTTACCTT
93309250 GATTTGGCTTC
1 GATTTGGCTTC
93309261 GGGCTATGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
76 1 0.01
77 76 0.97
78 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.37
Consensus pattern (77 bp):
GATTTGGCTTCAGTCCACGAATATCAACTGATTTGGCTTCGGGCTATGATATCAGTACTTCAGAT
ATAAGTTACCTT
Found at i:93309739 original size:46 final size:46
Alignment explanation
Indices: 93309670--93309778 Score: 195
Period size: 46 Copynumber: 2.4 Consensus size: 46
93309660 ACCTTTAAGC
*
93309670 TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
1 TTATGTTTTGAGTATATGACATGTATAGGGACTTTGATCATGTTGG
93309716 TTATGTTTTGAGTATATGACATGTATAGGGACTTTGATCATGTTGG
1 TTATGTTTTGAGTATATGACATGTATAGGGACTTTGATCATGTTGG
93309762 TTATGTTTTG-GTA-ATGA
1 TTATGTTTTGAGTATATGA
93309779 TTTTGGCCAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
44 4 0.06
45 3 0.05
46 55 0.89
ACGTcount: A:0.23, C:0.06, G:0.27, T:0.45
Consensus pattern (46 bp):
TTATGTTTTGAGTATATGACATGTATAGGGACTTTGATCATGTTGG
Found at i:93311199 original size:73 final size:73
Alignment explanation
Indices: 93311080--93311225 Score: 249
Period size: 73 Copynumber: 2.0 Consensus size: 73
93311070 TAATTTGCCG
*
93311080 CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAAA
1 CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGAAAA
93311145 TGACGCAT
66 TGACGCAT
* *
93311153 CTCACTTTGGGAAAAGTT-TTACCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGAAA
1 CTCACTTTGCGAAAAGTTCCT-CCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGAAA
93311217 ATGACGCAT
65 ATGACGCAT
93311226 TCTCTTTAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
72 1 0.01
73 68 0.99
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (73 bp):
CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGAAAA
TGACGCAT
Found at i:93313429 original size:13 final size:13
Alignment explanation
Indices: 93313411--93313439 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
93313401 GTTTTATTAC
93313411 TATACTATACTCA
1 TATACTATACTCA
93313424 TATACTATACTCA
1 TATACTATACTCA
93313437 TAT
1 TAT
93313440 TTAAGATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (13 bp):
TATACTATACTCA
Found at i:93319457 original size:13 final size:13
Alignment explanation
Indices: 93319439--93319464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93319429 ATATTATAAT
93319439 TATTTTATGTTAA
1 TATTTTATGTTAA
93319452 TATTTTATGTTAA
1 TATTTTATGTTAA
93319465 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:93320893 original size:40 final size:40
Alignment explanation
Indices: 93320847--93321090 Score: 402
Period size: 40 Copynumber: 6.1 Consensus size: 40
93320837 ACTAAGATCT
93320847 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
93320887 GAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
93320927 GAAGGAATTTGTGCTAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
93320967 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
93321007 GAAGGTATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
93321047 GAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
93321086 GAAGG
1 GAAGG
93321091 TACTTGGGTT
Statistics
Matches: 193, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.08
40 176 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:93326033 original size:23 final size:23
Alignment explanation
Indices: 93325993--93326038 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
93325983 CTGGAGAGAA
*
93325993 AAAAAAAGAGAAATAATTTATTT
1 AAAAAAAGAGAAATAATTAATTT
*
93326016 AAAAAAAGAAGAGA-AATTAATTT
1 AAAAAAAG-AGAAATAATTAATTT
93326039 TTTTGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (23 bp):
AAAAAAAGAGAAATAATTAATTT
Done.