Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 302 of 425
Found at i:93866241 original size:27 final size:27
Alignment explanation
Indices: 93866208--93866287 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
93866198 TTTTACCCTA
* *
93866208 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
93866235 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
93866262 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
93866288 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:93866242 original size:54 final size:54
Alignment explanation
Indices: 93866183--93866309 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
93866173 TTACCCCACA
** *
93866183 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
93866236 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
93866291 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
93866310 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:93866295 original size:27 final size:28
Alignment explanation
Indices: 93866209--93866321 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
93866199 TTTACCCTAC
* * *
93866209 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
93866236 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
93866263 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
93866291 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
93866318 AGGG
1 AGGG
93866322 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:93866322 original size:27 final size:27
Alignment explanation
Indices: 93866302--93866620 Score: 365
Period size: 27 Copynumber: 11.8 Consensus size: 27
93866292 GGGTATTTCT
*
93866302 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * *
93866329 GTAATTCTGTAAATC-AAGATAAAAATA
1 GTAATTTTGTAAATCGAGGGT-AAAACA
* * *
93866356 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
93866382 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
93866410 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
93866437 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * **
93866464 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
93866491 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
93866518 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
93866545 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
93866572 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
93866598 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
93866621 CTTTGGTAAT
Statistics
Matches: 251, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.02
27 242 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:93866631 original size:54 final size:54
Alignment explanation
Indices: 93866302--93866620 Score: 424
Period size: 54 Copynumber: 5.9 Consensus size: 54
93866292 GGGTATTTCT
* ** * * * *
93866302 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATC-AAGATAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT-AAAACA
* * *
93866356 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
93866410 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
93866464 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
93866518 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
93866572 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
93866621 CTTTGGTAAT
Statistics
Matches: 235, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 232 0.99
55 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:93866633 original size:81 final size:82
Alignment explanation
Indices: 93866302--93866620 Score: 403
Period size: 81 Copynumber: 3.9 Consensus size: 82
93866292 GGGTATTTCT
* * * **
93866302 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATC-AAGATAAAAATAGTAATTCTAT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
93866366 AAATCGACGGTAAAACG
66 AAATCGAGGGTAAAACG
* * *
93866383 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACG-GTAATTTTAT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
93866447 AAATCGAGGGTAAAACA
66 AAATCGAGGGTAAAACG
* * ** * * *
93866464 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC-AGTAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
93866528 AAATTGAGGGTAAAACG
66 AAATCGAGGGTAAAACG
* * * *
93866545 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACGA-TAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
93866609 AAATCGGGGGTA
66 AAATCGAGGGTA
93866621 CTTTGGTAAT
Statistics
Matches: 208, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
81 200 0.96
82 8 0.04
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (82 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
AAATCGAGGGTAAAACG
Found at i:93866647 original size:27 final size:27
Alignment explanation
Indices: 93866626--93866715 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
93866616 GGGTACTTTG
*
93866626 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
93866653 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
93866680 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
93866707 GTAATTTTA
1 GTAATTTTA
93866716 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:93866667 original size:54 final size:54
Alignment explanation
Indices: 93866609--93866715 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
93866599 ATAATTCTGT
* * *
93866609 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
93866663 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
93866716 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:93866729 original size:27 final size:27
Alignment explanation
Indices: 93866626--93866730 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
93866616 GGGTACTTTG
* *
93866626 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
93866653 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
93866680 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
93866707 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
93866731 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:93868025 original size:16 final size:16
Alignment explanation
Indices: 93868000--93868030 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93867990 GAGGTAAGTT
93868000 TTCGAGTAGATTATGA
1 TTCGAGTAGATTATGA
*
93868016 TTCGATTAGATTATG
1 TTCGAGTAGATTATG
93868031 TCTTGAGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (16 bp):
TTCGAGTAGATTATGA
Found at i:93868304 original size:40 final size:40
Alignment explanation
Indices: 93868180--93868404 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
93868170 TATTCGAATG
* *
93868180 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * ** *
93868221 ATAACCGGACTAAGATCCGAAGGCATTCATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
93868261 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
93868301 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
93868341 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
93868381 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
93868405 CTTGCGCAAG
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:93868394 original size:120 final size:121
Alignment explanation
Indices: 93868180--93868404 Score: 303
Period size: 120 Copynumber: 1.9 Consensus size: 121
93868170 TATTCGAATG
** * *
93868180 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* *
93868245 ATTCATGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
93868301 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
93868364 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGC
93868405 CTTGCGCAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.03
120 57 0.63
121 30 0.33
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:93872995 original size:12 final size:12
Alignment explanation
Indices: 93872978--93873007 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
93872968 TCAGGTAGTT
93872978 ACACGGCCTAGC
1 ACACGGCCTAGC
93872990 ACACGGCCTAGC
1 ACACGGCCTAGC
93873002 ACACGG
1 ACACGG
93873008 GTGTGTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:93873355 original size:38 final size:38
Alignment explanation
Indices: 93873312--93873393 Score: 139
Period size: 38 Copynumber: 2.2 Consensus size: 38
93873302 ACATTGATTG
93873312 AATTTTCT-ATAAGTGATATTGTGACTTGAATGTTTTAA
1 AATTTT-TAATAAGTGATATTGTGACTTGAATGTTTTAA
*
93873350 AATTTTTAATAAGTGATGTTGTGACTTGAATGTTTTAA
1 AATTTTTAATAAGTGATATTGTGACTTGAATGTTTTAA
93873388 AATTTT
1 AATTTT
93873394 GAACATTTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
37 1 0.02
38 41 0.98
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.49
Consensus pattern (38 bp):
AATTTTTAATAAGTGATATTGTGACTTGAATGTTTTAA
Found at i:93876777 original size:29 final size:29
Alignment explanation
Indices: 93876733--93876790 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
93876723 TGACGACCAT
* *
93876733 GAATATTTAAAGGGATAGC-TTCGGCTATC
1 GAATATTAAAACGGATAGCTTTC-GCTATC
93876762 GAATATTAAAACGGATAGCTTTCGCTATC
1 GAATATTAAAACGGATAGCTTTCGCTATC
93876791 AATTAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (29 bp):
GAATATTAAAACGGATAGCTTTCGCTATC
Found at i:93883205 original size:12 final size:12
Alignment explanation
Indices: 93883183--93883213 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
93883173 CAGATTGGAG
93883183 AAATT-ATTATA
1 AAATTAATTATA
93883194 AAATTAATTATA
1 AAATTAATTATA
93883206 AAATTAAT
1 AAATTAAT
93883214 AATCTAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AAATTAATTATA
Found at i:93883295 original size:14 final size:13
Alignment explanation
Indices: 93883248--93883295 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
93883238 GTGTTGATCC
93883248 AAATTAA-TATATT
1 AAATTAACTA-ATT
93883261 -AATTAAACTAATT
1 AAATT-AACTAATT
93883274 AAATTAACTAACTT
1 AAATTAACTAA-TT
93883288 AAATTAAC
1 AAATTAAC
93883296 CTACTAGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.13
13 11 0.35
14 16 0.52
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTAACTAATT
Found at i:93885143 original size:13 final size:13
Alignment explanation
Indices: 93885125--93885152 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93885115 ACATATTATA
93885125 AATATTTTGTGTT
1 AATATTTTGTGTT
93885138 AATATTTTGTGTT
1 AATATTTTGTGTT
93885151 AA
1 AA
93885153 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:93886631 original size:39 final size:40
Alignment explanation
Indices: 93886577--93886820 Score: 379
Period size: 40 Copynumber: 6.2 Consensus size: 40
93886567 GGACTAAGAT
93886577 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGC-AAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
93886616 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
93886655 CCGAAGGAATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
93886695 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
93886735 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
93886775 CCGAAGGCATTTGTACGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
93886814 CCGAAGG
1 CCGAAGG
93886821 TACTTGGGTT
Statistics
Matches: 190, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 84 0.44
40 106 0.56
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:93893308 original size:13 final size:13
Alignment explanation
Indices: 93893290--93893317 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93893280 ACATATTATA
93893290 AATATTTTGTGTT
1 AATATTTTGTGTT
93893303 AATATTTTGTGTT
1 AATATTTTGTGTT
93893316 AA
1 AA
93893318 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:93894819 original size:40 final size:40
Alignment explanation
Indices: 93894735--93894979 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
93894725 GGACTAAGAT
93894735 CCGAAGGCATTTGTGCTAGTTACTATAT-CGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
93894774 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
93894814 CCGAAGGAATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
93894854 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
93894894 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
93894934 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
93894973 CCGAAGG
1 CCGAAGG
93894980 TACTTGGGTT
Statistics
Matches: 192, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 44 0.23
40 147 0.77
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:93894931 original size:120 final size:119
Alignment explanation
Indices: 93894719--93894979 Score: 445
Period size: 120 Copynumber: 2.2 Consensus size: 119
93894709 TATTCGGATG
93894719 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCGGGCTAAGTCCCGAAGGCAT
* *
93894784 TTGTGCTAGTTACTATATCTGGGCTAAGTCCCGAAGGAATTTGTGCTAGTTACT
66 TTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACT
93894838 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATAT-CGGGCTAAGTCCCGAAGGCA
* *
93894903 TTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
65 TTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACT
*
93894958 ATATCCGG-CTAA-ATCCCGAAGG
1 ATAACCGGACTAAGAT-CCGAAGG
93894980 TACTTGGGTT
Statistics
Matches: 135, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
118 2 0.01
119 55 0.41
120 78 0.58
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (119 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCGGGCTAAGTCCCGAAGGCAT
TTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACT
Found at i:93896465 original size:77 final size:78
Alignment explanation
Indices: 93896351--93896513 Score: 208
Period size: 77 Copynumber: 2.1 Consensus size: 78
93896341 CGGAATATAA
* *
93896351 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA-TACC-GCACGAA-T
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTA-ACCGGATAGAATTACCAGCA-GAATT
93896413 GCCTTCGGGCTTAGC
64 GCCTTCGGGCTTAGC
* * * *
93896428 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCGGATATAATTTCCAGCATAATTG
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCGGATAGAATTACCAGCAGAATTG
*
93896492 TCTTCGGGCTTAGC
65 CCTTCGGGCTTAGC
93896506 CCGGATAT
1 CCGGATAT
93896514 CATTCAATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
76 10 0.13
77 39 0.52
78 26 0.35
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCGGATAGAATTACCAGCAGAATTGC
CTTCGGGCTTAGC
Found at i:93896491 original size:39 final size:38
Alignment explanation
Indices: 93896351--93896513 Score: 161
Period size: 39 Copynumber: 4.2 Consensus size: 38
93896341 CGGAATATAA
** *
93896351 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAT-ACCAGCACAATTGCCTTCGGG-CTTAGC
*
93896391 CCGGATAGAATACC-GCACGAA-TGCCTTCGGGCTTAGC
1 CCGGATATAATACCAGCAC-AATTGCCTTCGGGCTTAGC
* * *
93896428 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAA-TACCAGCACAATTGCCTTCGGG-CTTAGC
* * *
93896467 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAA-TACCAGCACAATTGCCTTCGGGCTTAGC
93896506 CCGGATAT
1 CCGGATAT
93896514 CATTCAATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
37 15 0.14
38 22 0.21
39 53 0.51
40 14 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
CCGGATATAATACCAGCACAATTGCCTTCGGGCTTAGC
Found at i:93904326 original size:40 final size:40
Alignment explanation
Indices: 93904281--93904447 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
93904271 CGGAATATAA
93904281 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
93904321 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
93904361 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
93904401 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
93904440 CCGGATAT
1 CCGGATAT
93904448 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:93904431 original size:80 final size:79
Alignment explanation
Indices: 93904281--93904447 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
93904271 CGGAATATAA
* *
93904281 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
93904346 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
93904361 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
93904423 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
93904440 CCGGATAT
1 CCGGATAT
93904448 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:93905295 original size:17 final size:19
Alignment explanation
Indices: 93905272--93905317 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
93905262 AAGAAGCATG
93905272 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
93905290 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
93905308 AATCATGCTC
1 AATCATGCTC
93905318 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:93907935 original size:39 final size:39
Alignment explanation
Indices: 93907876--93907951 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
93907866 TGTTTTTGAG
* * *
93907876 TATTGTGATATATGCCTAAATGTTATGTGGTTATATGAC
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
*
93907915 TATTGTGATAGATACTTAAATGTTATGTGATTATATG
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATG
93907952 TGTAATGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (39 bp):
TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
Found at i:93907973 original size:39 final size:39
Alignment explanation
Indices: 93907879--93907973 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
93907869 TTTTGAGTAT
** * *
93907879 TGTGATATATGCCTAAATGTTATGTGGTTATATGACTAT
1 TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
* **
93907918 TGTGATAGAT-ACTTAAATGTTATGTGATTATATGTGTAA
1 TGTGATATATGA-TTAAATGTTATGTGATTATATGACTAA
93907957 TGTGATATATGATTAAA
1 TGTGATATATGATTAAA
93907974 ATTGAATATG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
39 45 0.98
40 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (39 bp):
TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
Found at i:93910159 original size:68 final size:70
Alignment explanation
Indices: 93910087--93910284 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
93910077 ACACCCTGTA
* * * *
93910087 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
93910149 ATAAAT
65 ATAAAT
*
93910155 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
93910220 ATAAAT
65 ATAAAT
*
93910226 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
93910285 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:93910198 original size:41 final size:41
Alignment explanation
Indices: 93910153--93910270 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93910143 TGAAAGATAA
93910153 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93910194 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93910224 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93910265 ATGTAG
1 ATGTAG
93910271 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93910210 original size:71 final size:71
Alignment explanation
Indices: 93910121--93910284 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93910111 GAGATGTATC
93910121 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93910186 AGGACA
66 AGGACA
93910192 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93910257 AGGACA
66 AGGACA
93910263 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93910285 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93917726 original size:68 final size:70
Alignment explanation
Indices: 93917654--93917851 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
93917644 ACACCCTGTA
* * * *
93917654 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
93917716 ATAAAT
65 ATAAAT
*
93917722 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
93917787 ATAAAT
65 ATAAAT
*
93917793 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
93917852 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:93917765 original size:41 final size:41
Alignment explanation
Indices: 93917720--93917837 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93917710 TGAAAGATAA
93917720 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93917761 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93917791 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93917832 ATGTAG
1 ATGTAG
93917838 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93917777 original size:71 final size:71
Alignment explanation
Indices: 93917688--93917851 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93917678 GAGATGTATC
93917688 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93917753 AGGACA
66 AGGACA
93917759 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93917824 AGGACA
66 AGGACA
93917830 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93917852 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93921267 original size:46 final size:46
Alignment explanation
Indices: 93921214--93921342 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
93921204 ATATTGGGCA
*
93921214 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
93921260 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
93921306 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93921343 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:93923277 original size:21 final size:21
Alignment explanation
Indices: 93923251--93923301 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
93923241 GCTTCAGGGG
*
93923251 TGTGTCGTGACATCCCTTGGT
1 TGTGTCATGACATCCCTTGGT
93923272 TGTGTCATGACATCCCTTGGT
1 TGTGTCATGACATCCCTTGGT
93923293 TGTGTCATG
1 TGTGTCATG
93923302 TCACTGAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39
Consensus pattern (21 bp):
TGTGTCATGACATCCCTTGGT
Found at i:93930489 original size:23 final size:22
Alignment explanation
Indices: 93930460--93930533 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
93930450 TATTGTTTTT
93930460 AACTCATTGGAGCTTACCATTTC
1 AACTCA-TGGAGCTTACCATTTC
*
93930483 AACTCATGTGAGCTTACTA-TTC
1 AACTCATG-GAGCTTACCATTTC
* * *
93930505 AGCTCAATAGAGCTTACCGTTTC
1 AACTC-ATGGAGCTTACCATTTC
*
93930528 AGCTCA
1 AACTCA
93930534 ATAAAGCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
22 18 0.42
23 25 0.58
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (22 bp):
AACTCATGGAGCTTACCATTTC
Found at i:93930534 original size:23 final size:23
Alignment explanation
Indices: 93930469--93930572 Score: 88
Period size: 23 Copynumber: 4.4 Consensus size: 23
93930459 TAACTCATTG
* * *
93930469 GAGCTTACCATTTCAACTC-ATGT
1 GAGCTTACCGTTTCAGCTCAAT-A
93930492 GAGCTTA-C-TATTCAGCTCAATA
1 GAGCTTACCGT-TTCAGCTCAATA
93930514 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCAATA
* * *
93930537 AAGCTTACTGTTCATCAGCTCAAGAA
1 GAGCTTACCGTT--TCAGCTCAA-TA
93930563 GAGCTTACCG
1 GAGCTTACCG
93930573 ATCATGGTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
21 1 0.01
22 15 0.22
23 32 0.48
24 1 0.01
25 9 0.13
26 9 0.13
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCAATA
Found at i:93933243 original size:45 final size:45
Alignment explanation
Indices: 93933179--93933337 Score: 257
Period size: 45 Copynumber: 3.6 Consensus size: 45
93933169 TGTACAGTAC
* *
93933179 TATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
93933224 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
93933269 TATTAGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
93933314 TATTCAGGCC-TCGAGCCTAGCAGG
1 TATTCGGGCCTTTGAGCCTAGCAGG
93933338 TGAAATGTCG
Statistics
Matches: 106, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
44 13 0.12
45 93 0.88
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:93945513 original size:18 final size:18
Alignment explanation
Indices: 93945472--93945510 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
93945462 TGAAATGTTG
*
93945472 AAATTTTTCTAAGTTTCC
1 AAATTTTTCTAAGTTACC
*
93945490 AAATTTTTCATATGTTACC
1 AAATTTTTC-TAAGTTACC
93945509 AA
1 AA
93945511 TTTAGTCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.46
Consensus pattern (18 bp):
AAATTTTTCTAAGTTACC
Found at i:93951407 original size:56 final size:56
Alignment explanation
Indices: 93951346--93951522 Score: 318
Period size: 56 Copynumber: 3.2 Consensus size: 56
93951336 AATCCGCACA
93951346 CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
1 CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
93951402 CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
1 CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
* * * *
93951458 CACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCGCACA
1 CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
93951514 CACAGTGCC
1 CACAGTGCC
93951523 TCAATTCATT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (56 bp):
CACAGTGCCCACTGACCGATCTCGCACACATATTGCTCAGTTAAAGAATTCGAACG
Found at i:93951768 original size:16 final size:16
Alignment explanation
Indices: 93951730--93951769 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
93951720 CATCACCGGT
*
93951730 ACGAAGCCTGCTAGGA
1 ACGAAGGCTGCTAGGA
93951746 ACGAAGGCTGCTAGGA
1 ACGAAGGCTGCTAGGA
93951762 ACGAAGGC
1 ACGAAGGC
93951770 CCAAATACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.35, T:0.10
Consensus pattern (16 bp):
ACGAAGGCTGCTAGGA
Found at i:93951801 original size:59 final size:59
Alignment explanation
Indices: 93951694--93951812 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 59
93951684 GGCATTAAGC
* * * *
93951694 CTGCTAGGCACGAAGACCCAAATACACATCACCGGTACGAAGCCTGCTAGGAACGAAGG
1 CTGCTAGGAACGAAGACCCAAATACACATCACCAGCACAAAGCCTGCTAGGAACGAAGG
* * * *
93951753 CTGCTAGGAACGAAGGCCCAAATACACATCACCAGCACAAAGCTTGCTAGGCATGAAGG
1 CTGCTAGGAACGAAGACCCAAATACACATCACCAGCACAAAGCCTGCTAGGAACGAAGG
93951812 C
1 C
93951813 CTGATTACAC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.34, C:0.29, G:0.24, T:0.13
Consensus pattern (59 bp):
CTGCTAGGAACGAAGACCCAAATACACATCACCAGCACAAAGCCTGCTAGGAACGAAGG
Found at i:93951890 original size:40 final size:40
Alignment explanation
Indices: 93951825--93951985 Score: 268
Period size: 40 Copynumber: 4.0 Consensus size: 40
93951815 GATTACACAT
* * * *
93951825 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
93951865 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
93951905 CACCAGAACGAATGCTCTTCGGGACTTAGCCCGGCTATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
93951945 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
93951985 C
1 C
93951986 TCTCAATTCT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:93953299 original size:25 final size:25
Alignment explanation
Indices: 93953253--93953328 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
93953243 AACCCTAATC
93953253 CCACCTACTCCACCA-CC---TTGG
1 CCACCTACTCCACCACCCTTGTTGG
93953274 CCACCTACTCCACCACCCTTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
* *
93953299 CCATCTACTCCACCACCATTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
93953324 CCACC
1 CCACC
93953329 CACCTTGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
21 15 0.31
22 2 0.04
25 31 0.65
ACGTcount: A:0.18, C:0.49, G:0.11, T:0.22
Consensus pattern (25 bp):
CCACCTACTCCACCACCCTTGTTGG
Found at i:93953786 original size:3 final size:3
Alignment explanation
Indices: 93953751--93953844 Score: 65
Period size: 3 Copynumber: 31.3 Consensus size: 3
93953741 GAGCCTTGTT
* * *
93953751 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
93953794 TTA TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA
1 TTA TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA
93953839 -TA TTA T
1 TTA TTA T
93953845 ATATGCCCTC
Statistics
Matches: 73, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
2 9 0.12
3 55 0.75
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:93953819 original size:21 final size:18
Alignment explanation
Indices: 93953751--93953848 Score: 91
Period size: 18 Copynumber: 5.6 Consensus size: 18
93953741 GAGCCTTGTT
*
93953751 TTATTTTTATT-TTATT-
1 TTATTTATATTATTATTA
*
93953767 TTA-TTAT-TT-TTACTA
1 TTATTTATATTATTATTA
93953782 TTATTTATATTATTATTA
1 TTATTTATATTATTATTA
*
93953800 TTATTTCTCATGTATATATTA
1 TTATTTAT-AT-TAT-TATTA
93953821 TTATTTATATTATTATTA
1 TTATTTATATTATTATTA
93953839 -TATTATATAT
1 TTATT-TATAT
93953849 GCCCTCTCCA
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
14 6 0.09
15 6 0.09
16 7 0.10
17 6 0.09
18 22 0.32
19 5 0.07
20 5 0.07
21 12 0.17
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TTATTTATATTATTATTA
Found at i:93954180 original size:3 final size:3
Alignment explanation
Indices: 93954172--93954214 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
93954162 ATTTCTATAT
93954172 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
93954215 ATAGTAGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:93954266 original size:15 final size:17
Alignment explanation
Indices: 93954246--93954280 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
93954236 TATACATATA
93954246 TATATATATA-TATT-T
1 TATATATATAGTATTAT
93954261 TATATATATAGTATTAT
1 TATATATATAGTATTAT
93954278 TAT
1 TAT
93954281 TTACTTTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATATATATAGTATTAT
Found at i:93966213 original size:44 final size:44
Alignment explanation
Indices: 93966129--93966401 Score: 162
Period size: 44 Copynumber: 6.2 Consensus size: 44
93966119 TGCAGTGAAG
* * *
93966129 CAGATTGAAGAT-TTACAGATCTCAACCCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATA-AG-TCTTAAACCCCTAAGCAGTAGGGAAA
* * *
93966174 CAGATTGAAGATGATGAGTCTTAAACCTCTAAGCAGTAGGGTAA
1 CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGAAA
* * * *
93966218 CAGACT-AA-AT-TTACAGATCTTAACCCCCTAAGCAGTAAGGAAA
1 CAGATTGAAGATGATA-AG-TCTTAAACCCCTAAGCAGTAGGGAAA
** *** * * * *
93966261 CAGATCAAAGGCAATGAGCCTTAAACCTCTAAGCAGTAGGGTAA
1 CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGAAA
** ** * *
93966305 CAGGCTG-ATTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATAAG-TCTTAAACCCCTAAGCAGTAGGGAAA
* * * * * *
93966349 C-GAATCAATGATGACAAGCCTTAACCCCCTAAGCAGTAGGGTAA
1 CAGATTGAA-GATGATAAGTCTTAAACCCCTAAGCAGTAGGGAAA
*
93966393 CAGGTTGAA
1 CAGATTGAA
93966402 AATCAAATAT
Statistics
Matches: 169, Mismatches: 49, Indels: 20
0.71 0.21 0.08
Matches are distributed among these distances:
41 1 0.01
42 4 0.02
43 34 0.20
44 102 0.60
45 26 0.15
46 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (44 bp):
CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGAAA
Found at i:93966230 original size:87 final size:87
Alignment explanation
Indices: 93966139--93966395 Score: 327
Period size: 87 Copynumber: 2.9 Consensus size: 87
93966129 CAGATTGAAG
* * *
93966139 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAACCTCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGATGATGAGCCTTAAACCTCT
93966204 AAGCAGTAGGGTAACAGACTAA
66 AAGCAGTAGGGTAACAGACTAA
* * ***
93966226 ATTTACAGATCTTAACCCCCTAAGCAGTAAGGAAACAGATCAAAGGCAATGAGCCTTAAACCTCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGATGATGAGCCTTAAACCTCT
* *
93966291 AAGCAGTAGGGTAACAGGCTGA
66 AAGCAGTAGGGTAACAGACTAA
* * * * ** * *
93966313 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAAC-GAATCAATGATGACAAGCCTTAACCCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAG-ATTAAAGATGATGAGCCTTAAACCT
93966377 CTAAGCAGTAGGGTAACAG
64 CTAAGCAGTAGGGTAACAG
93966396 GTTGAAAATC
Statistics
Matches: 147, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
87 83 0.56
88 64 0.44
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (87 bp):
ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGATGATGAGCCTTAAACCTCT
AAGCAGTAGGGTAACAGACTAA
Found at i:93966916 original size:25 final size:25
Alignment explanation
Indices: 93966870--93966945 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
93966860 AACCCTAATC
93966870 CCACCTACTCCACCA-CC---TTGG
1 CCACCTACTCCACCACCCTTGTTGG
93966891 CCACCTACTCCACCACCCTTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
* *
93966916 CCATCTACTCCACCACCATTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
93966941 CCACC
1 CCACC
93966946 CACCTTGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
21 15 0.31
22 2 0.04
25 31 0.65
ACGTcount: A:0.18, C:0.49, G:0.11, T:0.22
Consensus pattern (25 bp):
CCACCTACTCCACCACCCTTGTTGG
Found at i:93967414 original size:21 final size:19
Alignment explanation
Indices: 93967366--93967455 Score: 73
Period size: 19 Copynumber: 4.8 Consensus size: 19
93967356 GAGAGCCTTG
93967366 TTTTAT-TT-TTATTTTTA
1 TTTTATATTATTATTTTTA
*
93967383 TTTTATTTTATTATTTTTA
1 TTTTATATTATTATTTTTA
*
93967402 CTATTTATATTATTATTATTA
1 -T-TTTATATTATTATTTTTA
* *
93967423 TTTCTCAT-GTA-TATTATTA
1 TTT-T-ATATTATTATTTTTA
93967442 -TTTATATTATTATT
1 TTTTATATTATTATT
93967456 ATATTATATA
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
16 2 0.03
17 9 0.15
18 8 0.13
19 19 0.31
20 5 0.08
21 18 0.30
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (19 bp):
TTTTATATTATTATTTTTA
Found at i:93967415 original size:3 final size:3
Alignment explanation
Indices: 93967368--93967462 Score: 60
Period size: 3 Copynumber: 32.3 Consensus size: 3
93967358 GAGCCTTGTT
* * * *
93967368 TTA TTT TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TT- TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
93967411 TTA TTA TTA TTA TT- TCTCA TGTA -TA TTA TTA TT- TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-T-A T-TA TTA TTA TTA TTA T-TA TTA TTA TTA
93967457 -TA TTA T
1 TTA TTA T
93967463 ATATGCCCTC
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
2 11 0.15
3 56 0.78
4 3 0.04
5 2 0.03
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:93970342 original size:48 final size:48
Alignment explanation
Indices: 93970285--93970384 Score: 193
Period size: 48 Copynumber: 2.1 Consensus size: 48
93970275 TATGTTCTTG
93970285 TTTA-TTCATTTGAAACTATACTCATTAAGGAGTCTAAGAATATAAAT
1 TTTATTTCATTTGAAACTATACTCATTAAGGAGTCTAAGAATATAAAT
93970332 TTTATTTCATTTGAAACTATACTCATTAAGGAGTCTAAGAATATAAAT
1 TTTATTTCATTTGAAACTATACTCATTAAGGAGTCTAAGAATATAAAT
93970380 TTTAT
1 TTTAT
93970385 CTTATAACAA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 4 0.08
48 48 0.92
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (48 bp):
TTTATTTCATTTGAAACTATACTCATTAAGGAGTCTAAGAATATAAAT
Found at i:93975163 original size:46 final size:45
Alignment explanation
Indices: 93975091--93975214 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 45
93975081 ATCTCGAGGT
* *
93975091 CGATGCATGTCCCAGATATGTCTTACACTAGCTCTCGTCTCAA-TG-C
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGAC
* * *
93975137 CGATGCCATGTCCCAGACATG-GTTACATTGGCTCTCATAATGTGAC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGAC
93975183 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
93975215 GCACAAATGA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 17 0.26
46 31 0.48
47 14 0.22
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGAC
Found at i:93977368 original size:33 final size:33
Alignment explanation
Indices: 93977331--93977440 Score: 80
Period size: 33 Copynumber: 3.2 Consensus size: 33
93977321 AAAGATGTAC
93977331 AAGACCATGGTTGGACCATGGCAATGTTTACGT
1 AAGACCATGGTTGGACCATGGCAATGTTTACGT
* * * * * * *
93977364 AAGACCGTAGCG-AGG-CTATGGTAGTTTTTCAGACGC
1 AAGACCAT-G-GTTGGACCATGGCAATGTTT---ACGT
* *
93977400 AAGACCACGATTGGACCATGGCAATGTTTACGT
1 AAGACCATGGTTGGACCATGGCAATGTTTACGT
93977433 AAGACCAT
1 AAGACCAT
93977441 AGCAAGGCTA
Statistics
Matches: 53, Mismatches: 17, Indels: 14
0.63 0.20 0.17
Matches are distributed among these distances:
33 27 0.51
34 3 0.06
35 4 0.08
36 19 0.36
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (33 bp):
AAGACCATGGTTGGACCATGGCAATGTTTACGT
Found at i:93977419 original size:69 final size:69
Alignment explanation
Indices: 93977330--93977489 Score: 266
Period size: 69 Copynumber: 2.3 Consensus size: 69
93977320 TAAAGATGTA
* *
93977330 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCGTAGCGAGGCTATGGTAGTTTTTCA
1 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
93977395 GACG
66 GACG
* *
93977399 CAAGACCACGATTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
1 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
*
93977464 GATG
66 GACG
*
93977468 TAAGACCATGGTTGGACCATGG
1 CAAGACCATGGTTGGACCATGG
93977490 TAGTGTATAC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 83 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (69 bp):
CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
GACG
Found at i:93985206 original size:26 final size:26
Alignment explanation
Indices: 93985177--93985286 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
93985167 TGATACAAAT
93985177 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
93985203 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
93985229 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
93985255 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
93985281 TGATAA
1 TGATAA
93985287 GAAATTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:93986778 original size:26 final size:26
Alignment explanation
Indices: 93986749--93986801 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
93986739 ATTTACAGTT
93986749 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
93986775 TACCGCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
93986801 T
1 T
93986802 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:93987330 original size:136 final size:136
Alignment explanation
Indices: 93987049--93987333 Score: 500
Period size: 137 Copynumber: 2.1 Consensus size: 136
93987039 GAGTAGTCTC
*
93987049 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
93987114 GTTATCTGAATAAGGGGCTAAGGCTCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
93987179 CTGTTA
131 CTGTTA
93987185 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93987250 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
*
93987314 ACTGTTG
130 ACTGTTA
**
93987321 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93987334 AGGCCCAATG
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
136 60 0.42
137 82 0.58
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
CTGTTA
Found at i:93988608 original size:12 final size:12
Alignment explanation
Indices: 93988591--93988625 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
93988581 ACTCGGGGAA
93988591 GAGGCCGTGGTC
1 GAGGCCGTGGTC
93988603 GAGGCCGTGGTC
1 GAGGCCGTGGTC
93988615 GAGGCCGTGGT
1 GAGGCCGTGGT
93988626 TAAGACCGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.23, G:0.51, T:0.17
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:93993594 original size:25 final size:26
Alignment explanation
Indices: 93993499--93993607 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
93993489 TGATACAAAT
93993499 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
93993525 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
93993551 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
93993577 TGATAAT-GGTTAGATAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
93993602 TGATAA
1 TGATAA
93993608 GAATTCATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 23 0.29
26 55 0.71
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:93998324 original size:40 final size:40
Alignment explanation
Indices: 93998265--93998431 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
93998255 AAATTGAATG
* * * *
93998265 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* ***
93998305 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
93998345 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
93998385 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
93998425 ATATCCG
1 ATATCCG
93998432 ATTATATTCC
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 101 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94002205 original size:12 final size:14
Alignment explanation
Indices: 94002174--94002206 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
94002164 TTTGACTTGT
94002174 TCTTAATTATGTGC
1 TCTTAATTATGTGC
94002188 TCTTAATTAT-TG-
1 TCTTAATTATGTGC
94002200 TCTTAAT
1 TCTTAAT
94002207 ATTCCAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 2 0.11
14 10 0.53
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (14 bp):
TCTTAATTATGTGC
Found at i:94006368 original size:31 final size:31
Alignment explanation
Indices: 94006333--94006406 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
94006323 AAAGTATCAA
* *
94006333 GTACTATGTACCGGTGA-TCATATTATAGTAG
1 GTACTATGTACCAGTCACT-ATATTATAGTAG
* *
94006364 GTACTATGTATCAGTCACTATATTATATTAG
1 GTACTATGTACCAGTCACTATATTATAGTAG
*
94006395 GTACTTTGTACC
1 GTACTATGTACC
94006407 TGTGTTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (31 bp):
GTACTATGTACCAGTCACTATATTATAGTAG
Found at i:94009556 original size:48 final size:48
Alignment explanation
Indices: 94009500--94009817 Score: 264
Period size: 48 Copynumber: 6.6 Consensus size: 48
94009490 TATGTGTGCT
* * *
94009500 AGTGTAAGACCATGTCTGGGACATGGCTTTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * **
94009548 AGTGTAAGACCAT-TTTGGAACATGGCACCGGTAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * ** *
94009595 AGTGTAAGACCATGTTTGGAACATGGCATTGGCAATGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * ** ** *
94009643 AGAGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * ** * *
94009691 AGAGTAAGACCATGTCTGGGACATGGCATTGGCATTGA-AATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-ACATTATGAGAGCC
* ** * *
94009739 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAC-ATTATGAGAGCC
**
94009787 AGTGTAAGACCATGTCCAGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
94009818 ACAATTTACC
Statistics
Matches: 230, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 39 0.17
48 191 0.83
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
Found at i:94009704 original size:96 final size:96
Alignment explanation
Indices: 94009497--94009768 Score: 350
Period size: 96 Copynumber: 2.8 Consensus size: 96
94009487 TGATATGTGT
* * ** *
94009497 GCTAGTGTAAGACCATGTCTGGGACATGGCTTTGGCCACATTATGAGAGCCAGTGTAAGACCAT-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGTTATGAGAGCTAGTGTAAGACCATG
* * * **
94009561 TTTGGAACATGGCACCGGTAATGTTATGAGA
66 TTTGGAACATGGCATCAGCAATGTTACAAGA
* * * *
94009592 GCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCAATGTTATGAGAGCTAGAGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGTTATGAGAGCTAGTGTAAGACCATG
94009657 TTTGGAACATGGCATCAGCAATGTTACAAGA
66 TTTGGAACATGGCATCAGCAATGTTACAAGA
* * **
94009688 GCTAGAGTAAGACCATGTCTGGGACATGGCATTGGCATTGAAATGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGTTATGAGAGCTAGTGTAAGACCATG
*
94009753 TCTAGG-ACATGGCATC
66 T-TTGGAACATGGCATC
94009769 GGCCTCGACA
Statistics
Matches: 152, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
95 55 0.36
96 94 0.62
97 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGTTATGAGAGCTAGTGTAAGACCATG
TTTGGAACATGGCATCAGCAATGTTACAAGA
Found at i:94009794 original size:96 final size:93
Alignment explanation
Indices: 94009500--94009815 Score: 318
Period size: 96 Copynumber: 3.3 Consensus size: 93
94009490 TATGTGTGCT
* *
94009500 AGTGTAAGACCATGTCTGGGACATGGCTTTGGCCACATT-ATGAGAGCCAGTGTAAGACCAT-TT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGG---CATTGATGAGAGCTAGTGTAAGACCATGTT
* * **
94009563 TGGAACATGGCACCGGTAATGTTATGAGAGCC
63 TGGAACATGGCATCGG-CATGACATGAGAGCC
* * * *
94009595 AGTGTAAGACCATGTTTGGAACATGGCATTGGCAATGTTATGAGAGCTAGAGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-AT-TGATGAGAGCTAGTGTAAGACCATGTTT
* *
94009660 GGAACATGGCATCAGCAATGTTACA--AGAGCT
64 GGAACATGGCATCGGC-ATG--ACATGAGAGCC
*
94009691 AGAGTAAGACCATGTCTGGGACATGGCATTGGCATTGAAATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTG--ATGAGAGCTAGTGTAAGACCATGT-T
* * *
94009756 AGG-ACATGGCATCGGCCTCGACATGTGAGCC
63 TGGAACATGGCATCGGCAT-GACATGAGAGCC
**
94009787 AGTGTAAGACCATGTCCAGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
94009816 CGACAATTTA
Statistics
Matches: 184, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
92 1 0.01
93 2 0.01
94 5 0.03
95 52 0.28
96 120 0.65
97 3 0.02
98 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGAGAGCTAGTGTAAGACCATGTTTGG
AACATGGCATCGGCATGACATGAGAGCC
Found at i:94012417 original size:124 final size:124
Alignment explanation
Indices: 94012195--94012419 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
94012185 GAATTATGTG
* * * ** * * *
94012195 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* **
94012260 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTTGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
94012319 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
94012384 GCTAAGTCCCGAAGAC-ATTTATGCTTGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTTGAAATTATAT
94012420 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.01
124 87 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTTGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:94012542 original size:80 final size:80
Alignment explanation
Indices: 94012376--94012543 Score: 187
Period size: 80 Copynumber: 2.1 Consensus size: 80
94012366 CAATTGAATG
* * ** *
94012376 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTTGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
94012441 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** * *
94012456 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATTCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
94012520 ATTCGTGC-ACGTGGTT
66 ATT-GTGCTA-GTGGCT
94012536 ATATCCGG
1 ATATCCGG
94012544 TTGTATTCCG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 4 0.06
80 68 0.94
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:94028068 original size:46 final size:48
Alignment explanation
Indices: 94028017--94028151 Score: 172
Period size: 46 Copynumber: 2.9 Consensus size: 48
94028007 ATGGTTGAGC
* *
94028017 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACAGG
* * *
94028064 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAC-AGG
94028109 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC
94028152 GAACGCCCGA
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.08
45 4 0.05
46 29 0.39
47 29 0.39
48 2 0.03
50 4 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACAGG
Found at i:94028337 original size:40 final size:40
Alignment explanation
Indices: 94028292--94028372 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
94028282 ATAAATATCC
94028292 ATACTTGCTTAATGCTCATATGATGTAGTGTATATGGCTT
1 ATACTTGCTTAATGCTCATATGATGTAGTGTATATGGCTT
94028332 ATACTTGCTTAATGCTCATATGATGTAGTGTATATGGCTT
1 ATACTTGCTTAATGCTCATATGATGTAGTGTATATGGCTT
94028372 A
1 A
94028373 CTTGATAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (40 bp):
ATACTTGCTTAATGCTCATATGATGTAGTGTATATGGCTT
Found at i:94029750 original size:14 final size:15
Alignment explanation
Indices: 94029698--94029750 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
94029688 TATCGTATCT
*
94029698 TGGGTTTC-TTATCC
1 TGGGTTTCTTTATTC
* *
94029712 TGGATCTCTTTATTC
1 TGGGTTTCTTTATTC
94029727 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
*
94029742 -GGTTTTCTT
1 TGGGTTTCTT
94029751 GTTATCTTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.08, C:0.17, G:0.19, T:0.57
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:94031713 original size:46 final size:46
Alignment explanation
Indices: 94031663--94031838 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
94031653 TGGTTGAGCA
*
94031663 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
94031709 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
94031756 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
94031802 CCCGAGCTCGTTGAGTTGGGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94031839 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:94031819 original size:93 final size:93
Alignment explanation
Indices: 94031660--94031831 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
94031650 GGATGGTTGA
* * *
94031660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
94031725 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
94031753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
94031818 TGGGTCCGAGTTCG
66 TGAGTCCGAGTTCG
94031832 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94038545 original size:24 final size:24
Alignment explanation
Indices: 94038499--94038593 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
94038489 GCTTTATCAT
*
94038499 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
94038524 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
94038548 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
94038571 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
94038594 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:94038578 original size:47 final size:49
Alignment explanation
Indices: 94038499--94038592 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
94038489 GCTTTATCAT
*
94038499 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
94038548 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
94038593 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:94038669 original size:20 final size:20
Alignment explanation
Indices: 94038644--94038703 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
94038634 TATGATTACC
94038644 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
** *
94038664 TCATGTGTGTATCATACATT
1 TCATGTGCATATCATACATA
94038684 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
94038704 CCATATTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:94038778 original size:25 final size:25
Alignment explanation
Indices: 94038746--94038793 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
94038736 ATACATAAAC
* * *
94038746 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
94038771 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
94038794 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:94042980 original size:100 final size:100
Alignment explanation
Indices: 94042805--94042985 Score: 335
Period size: 100 Copynumber: 1.8 Consensus size: 100
94042795 TATTGTGAGG
*
94042805 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCACGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCACGTGTAGTACT
*
94042870 AAGTGTAGGCTACTATGCATACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCATACCCGAAAACTATGA
*
94042905 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCACGTGTAGTACT
94042970 AAGTGCAGGCTACTAT
66 AAGTGCAGGCTACTAT
94042986 TCGTACCAGA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCACGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAACTATGA
Found at i:94042996 original size:49 final size:49
Alignment explanation
Indices: 94042810--94042984 Score: 224
Period size: 49 Copynumber: 3.5 Consensus size: 49
94042800 TGAGGTCACG
*
94042810 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
* * * ** * ** * * *
94042859 CGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-T-TGGTCGCA
94042910 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
94042959 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
94042985 TTCGTACCAG
Statistics
Matches: 101, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 62 0.61
50 2 0.02
51 37 0.37
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
Found at i:94045401 original size:251 final size:250
Alignment explanation
Indices: 94044938--94045443 Score: 904
Period size: 251 Copynumber: 2.0 Consensus size: 250
94044928 CAAGCTATCC
* *
94044938 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAATTGGAAAGTGGGCATTAA
1 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGCGGGCATTAA
*
94045003 ACCAATATGAATGTTAGTTACTCAAAATGAATGACATGATTGAATATAATTGCTATGATGAAAAC
66 ACCAATATGAATGTTAGTTACTCAAAATGAATGACATGATTAAATATAATTGCTATGATGAAAAC
*
94045068 TGTGTTACATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
131 TGTGTTACATGTATATGTATATAAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
* *
94045133 TGTGGTGTTTTATAATGGAATTTCATGAGATTTGTACTAAATAAGTTTCCGGTTG
196 AGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
*
94045188 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATGAGATAACTGGAAAGCGGGCATTAA
1 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGCGGGCATTAA
* *
94045253 ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTAAGATATGATTGCTATGATGAAAA
66 ACCAATATGAATGTTAGTTACTCAAAATGAATGACATGATTAA-ATATAATTGCTATGATGAAAA
* *
94045318 CTGTGTTATATGTATATGTATATAAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCTTTACCA
130 CTGTGTTACATGTATATGTATATAAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCA
94045383 AAGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
195 AAGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
94045439 AGAAA
1 AGAAA
94045444 CCAAAGAGTT
Statistics
Matches: 244, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
250 103 0.42
251 141 0.58
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (250 bp):
AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGCGGGCATTAA
ACCAATATGAATGTTAGTTACTCAAAATGAATGACATGATTAAATATAATTGCTATGATGAAAAC
TGTGTTACATGTATATGTATATAAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
AGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
Found at i:94046213 original size:15 final size:15
Alignment explanation
Indices: 94046193--94046244 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
94046183 CTTGGGTTTC
94046193 TTTATTCTGGATTTA
1 TTTATTCTGGATTTA
94046208 TTTATTCTAGG-TTT-
1 TTTATTCT-GGATTTA
94046222 TTCTA-TCTTGGATTTA
1 TT-TATTC-TGGATTTA
94046238 TTTATTC
1 TTTATTC
94046245 GGTTTTGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 6 0.19
15 19 0.61
16 6 0.19
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTATTCTGGATTTA
Found at i:94048887 original size:100 final size:100
Alignment explanation
Indices: 94048714--94048895 Score: 337
Period size: 100 Copynumber: 1.8 Consensus size: 100
94048704 TATTGTGAGG
* *
94048714 TCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCATGTGTAGTACT
94048779 AAGTGTAGGCTACTATGTGTACCCGAAAACTGTGA
66 AAGTGTAGGCTACTATGTGTACCCGAAAACTGTGA
*
94048814 TCACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAGATTATTGATCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCATGTGTAGTACT
94048879 AAGTGTAGGCTACTATG
66 AAGTGTAGGCTACTATG
94048896 CATACCAGAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCATGTGTAGTACT
AAGTGTAGGCTACTATGTGTACCCGAAAACTGTGA
Found at i:94048905 original size:49 final size:49
Alignment explanation
Indices: 94048719--94048893 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
94048709 TGAGGTCACG
* *
94048719 TGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCA
* * * ** * *
94048768 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-T-TGATCGCA
*
94048819 TGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAGATTATTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCA
*
94048868 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
94048894 TGCATACCAG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 64 0.61
50 2 0.02
51 39 0.37
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGATCGCA
Found at i:94053734 original size:13 final size:13
Alignment explanation
Indices: 94053694--94053737 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 13
94053684 ACGCCCGTGT
94053694 GGCCAGGCTGTGG
1 GGCCAGGCTGTGG
94053707 GGTTCCCATGGCTGTGG
1 GG---CCA-GGCTGTGG
94053724 GGCCAGGCTGTGG
1 GGCCAGGCTGTGG
94053737 G
1 G
94053738 CAGATCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.41
14 3 0.11
16 3 0.11
17 10 0.37
ACGTcount: A:0.07, C:0.23, G:0.50, T:0.20
Consensus pattern (13 bp):
GGCCAGGCTGTGG
Found at i:94055509 original size:20 final size:19
Alignment explanation
Indices: 94055474--94055518 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 19
94055464 AAACCCTAAT
94055474 TTTCCC-TTTTCTTCTTTC
1 TTTCCCTTTTTCTTCTTTC
94055492 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTTCTTTC
94055512 TTTCCCT
1 TTTCCCT
94055519 GCTAATCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 6 0.24
19 4 0.16
20 15 0.60
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTCCCTTTTTCTTCTTTC
Found at i:94057391 original size:22 final size:22
Alignment explanation
Indices: 94057363--94057419 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
94057353 TTGTTGTAGA
* *
94057363 TATCACATTATCAGAACTTGGG
1 TATCACAATACCAGAACTTGGG
*
94057385 TATCACAATACCAGAGCTTGGG
1 TATCACAATACCAGAACTTGGG
* *
94057407 TATCGCGATACCA
1 TATCACAATACCA
94057420 CTATTGAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (22 bp):
TATCACAATACCAGAACTTGGG
Found at i:94061219 original size:39 final size:39
Alignment explanation
Indices: 94061175--94061251 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
94061165 CATTTCATAA
*
94061175 GAAATTATATACTTTAATTTATACCACCTTTTCATGTAT
1 GAAATTATATACTTTAATTTATACCACCGTTTCATGTAT
*
94061214 GAAATTATATATTTTAATTTATACCACCGTTTCATGTA
1 GAAATTATATACTTTAATTTATACCACCGTTTCATGTA
94061252 CATAAGCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.45
Consensus pattern (39 bp):
GAAATTATATACTTTAATTTATACCACCGTTTCATGTAT
Found at i:94066999 original size:40 final size:40
Alignment explanation
Indices: 94066893--94067076 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
94066883 TGCTGGAAAT
* * * * * **
94066893 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
94066933 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
94066973 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
94067011 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
94067052 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
94067077 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:94069027 original size:19 final size:19
Alignment explanation
Indices: 94069003--94069042 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
94068993 AAAATCTTTC
94069003 ATTTTTAAACATTTCATAA
1 ATTTTTAAACATTTCATAA
94069022 ATTTTTAAACATTTCATAA
1 ATTTTTAAACATTTCATAA
94069041 AT
1 AT
94069043 CATATCATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTTTAAACATTTCATAA
Found at i:94080701 original size:54 final size:53
Alignment explanation
Indices: 94080617--94080727 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
94080607 AGGAAGCATC
*
94080617 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * **
94080671 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
94080724 CTGG
1 CTGG
94080728 CAACCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:94080724 original size:26 final size:26
Alignment explanation
Indices: 94080617--94080727 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
94080607 AGGAAGCATC
* *
94080617 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
94080644 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
94080671 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
94080698 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
94080724 CTGG
1 CTGG
94080728 CAACCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:94087846 original size:40 final size:40
Alignment explanation
Indices: 94087800--94088024 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
94087790 CTTGCGCAAG
* * *
94087800 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94087840 GCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
94087880 GCCTTTGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94087920 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
94087960 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
94088001 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
94088025 CATTCGAATA
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:94087899 original size:80 final size:80
Alignment explanation
Indices: 94087764--94088024 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
94087754 CTCAAGAAAT
* * * * * * * *
94087764 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
94087827 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
94087842 CTTCGGGACTTAGCCCGAATATAGTC-ACTAGCACAAATGCCTTTGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
94087906 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
94087922 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
94087987 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
94088003 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94088025 CATTCGAATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:94092364 original size:31 final size:31
Alignment explanation
Indices: 94092329--94092392 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
94092319 CCTTTTCATG
*
94092329 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCAAAGCCT
* **
94092360 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATATTCCATAACACTGGGCCAAAGCCT
94092391 TT
1 TT
94092393 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCAAAGCCT
Found at i:94092636 original size:24 final size:24
Alignment explanation
Indices: 94092584--94092679 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
94092574 GCTTTATCAT
* *
94092584 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
94092609 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
94092633 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
94092657 ATAACTGGGGTATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
94092680 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 54 0.83
25 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:94092754 original size:20 final size:20
Alignment explanation
Indices: 94092729--94092789 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
94092719 TTATGATTAC
94092729 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
94092749 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
94092769 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
94092789 A
1 A
94092790 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:94092864 original size:25 final size:25
Alignment explanation
Indices: 94092832--94092879 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
94092822 ATACATAAAC
* * *
94092832 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
94092857 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
94092880 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:94096317 original size:39 final size:40
Alignment explanation
Indices: 94096140--94096321 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
94096130 CCGCACCAAG
* * * * * * * *
94096140 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
94096180 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
94096220 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
94096260 GCCTTC-GGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
94096298 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
94096322 CATTCAATTT
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 13 0.11
39 36 0.30
40 69 0.57
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:94104427 original size:39 final size:40
Alignment explanation
Indices: 94104249--94104431 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
94104239 CCGCACCAAG
* * * * * * * *
94104249 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
94104289 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
94104329 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
94104369 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
94104408 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
94104432 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:94108006 original size:27 final size:27
Alignment explanation
Indices: 94107930--94108040 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
94107920 AGGAAGCGTC
* *
94107930 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
94107957 CTGGTGGCTCTACCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
94107984 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* * *
94108011 TTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
94108037 CTGG
1 CTGG
94108041 CAACCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:94108016 original size:54 final size:53
Alignment explanation
Indices: 94107930--94108040 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
94107920 AGGAAGCGTC
* *
94107930 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCATATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * **
94107984 CTGGTGGCTCTGCCACAATTATCTGTTTTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
94108037 CTGG
1 CTGG
94108041 CAACCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:94115161 original size:40 final size:40
Alignment explanation
Indices: 94115114--94115339 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
94115104 CTTGCGCAAG
* * *
94115114 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94115154 GCCTTCGGGACTTAGCCCGAATATAGTC-CTTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
* * *
94115194 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
94115234 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
94115274 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
94115315 GCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATA
94115340 ATTCGAATAA
Statistics
Matches: 155, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
39 2 0.01
40 123 0.79
41 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:94115210 original size:80 final size:79
Alignment explanation
Indices: 94115077--94115339 Score: 280
Period size: 80 Copynumber: 3.3 Consensus size: 79
94115067 CTCAAGAAAT
* * * * * *
94115077 CTTCGGGACTTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGG
1 CTTCGGGAC-TTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
94115140 TCACTAGCATAAATGC
64 TCACTAGCACAAATGC
* * *
94115156 CTTCGGGACTTAGCCCGAATATAGTC-CTTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAC-TAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
94115220 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * ** * * *
94115236 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCATGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
94115301 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
94115317 CTTCGGGACTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATA
94115340 ATTCGAATAA
Statistics
Matches: 153, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
78 5 0.03
79 22 0.14
80 91 0.59
81 35 0.23
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:94115299 original size:120 final size:121
Alignment explanation
Indices: 94115114--94115341 Score: 318
Period size: 120 Copynumber: 1.9 Consensus size: 121
94115104 CTTGCGCAAG
* *
94115114 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGAATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGAATATA
* * **
94115179 GTC-CTTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
* * * **
94115234 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAATGCCTTC-GGATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGA-CTTAGCCCGAATA
94115297 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAAT
94115342 TCGAATAACC
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
119 4 0.04
120 55 0.59
121 35 0.37
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGAATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
Found at i:94117138 original size:40 final size:40
Alignment explanation
Indices: 94117083--94117163 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
94117073 GTGGTCCCGA
94117083 AACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCACAGG
1 AACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCACAGG
94117123 AACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCACAGG
1 AACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCACAGG
94117163 A
1 A
94117164 GGAGCCTGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
AACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCACAGG
Found at i:94119314 original size:27 final size:26
Alignment explanation
Indices: 94119274--94119380 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 26
94119264 AGGAAGCGTC
* *
94119274 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
94119301 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
94119328 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
94119355 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
94119381 TTGGCAGCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
26 12 0.16
27 60 0.81
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:94119358 original size:54 final size:53
Alignment explanation
Indices: 94119274--94119380 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 53
94119264 AGGAAGCGTC
*
94119274 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
94119328 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
94119381 TTGGCAGCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:94128453 original size:9 final size:9
Alignment explanation
Indices: 94128439--94128464 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
94128429 TATTTTCCGC
94128439 CGGCTAAAA
1 CGGCTAAAA
94128448 CGGCTAAAA
1 CGGCTAAAA
94128457 CGGCTAAA
1 CGGCTAAA
94128465 TTACATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (9 bp):
CGGCTAAAA
Found at i:94135571 original size:18 final size:18
Alignment explanation
Indices: 94135548--94135583 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
94135538 ATGAATTCTT
94135548 AGTTTAGATAATTAGTTA
1 AGTTTAGATAATTAGTTA
94135566 AGTTTAGATAATTAGTTA
1 AGTTTAGATAATTAGTTA
94135584 GTTAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (18 bp):
AGTTTAGATAATTAGTTA
Found at i:94141726 original size:93 final size:93
Alignment explanation
Indices: 94141614--94141785 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94141604 GCCCATAAGT
* *
94141614 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94141679 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94141707 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94141772 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94141786 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94141781 original size:46 final size:46
Alignment explanation
Indices: 94141606--94141781 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
94141596 TGTAACCCGC
* * *
94141606 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94141652 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94141702 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
94141745 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94141782 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94145242 original size:80 final size:80
Alignment explanation
Indices: 94145073--94145258 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
94145063 GCTACTCGTT
* * * *
94145073 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCCGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
94145137 AATTTAGCAACTCGCA
65 AATATAGCAACTAGCA
* **
94145153 CAAATGCCTT-CGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCCGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
94145216 GGATATAGTC-ACTTAGCA
64 GAATATAG-CAAC-TAGCA
94145234 CAAA-GCCTTCCGGACTTAGCCCGGA
1 CAAATGCCTTCCGGACTTAGCCCGGA
94145259 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
79 6 0.07
80 68 0.76
81 15 0.17
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGCAACTAGCA
Found at i:94145258 original size:40 final size:40
Alignment explanation
Indices: 94145073--94145258 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
94145063 GCTACTCGTT
* * * *
94145073 CAAATACCTTCGGGACATAGCCCGGTTATAGT-AGCTCGCA
1 CAAATGCCTTCCGGACTTAGCCCGGATATAGTCA-CTCGCA
* * * *
94145113 CAAATGCCTTCGGGACTTAACCCGAATTTAG-CAACTCGCA
1 CAAATGCCTTCCGGACTTAGCCCGGATATAGTC-ACTCGCA
* * *
94145153 CAAATGCCTT-CGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCCGGA-CTTAGCCCGGATATAGTCACTCGCA
* *
94145193 CAAATGCCTT-CGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCCGGA-CTTAGCCCGGATATAGTCAC-TCGCA
94145234 CAAA-GCCTTCCGGACTTAGCCCGGA
1 CAAATGCCTTCCGGACTTAGCCCGGA
94145259 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.02
40 109 0.87
41 13 0.10
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCCGGACTTAGCCCGGATATAGTCACTCGCA
Found at i:94151188 original size:7 final size:7
Alignment explanation
Indices: 94151168--94151211 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
94151158 TATCTAAAAA
94151168 ATAAATT
1 ATAAATT
* *
94151175 GAGAAATA
1 -ATAAATT
94151183 ATAAATT
1 ATAAATT
94151190 CATAAATT
1 -ATAAATT
94151198 ATAAATT
1 ATAAATT
94151205 ATAAATT
1 ATAAATT
94151212 TCAAAATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
7 19 0.61
8 12 0.39
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (7 bp):
ATAAATT
Found at i:94151539 original size:44 final size:44
Alignment explanation
Indices: 94151476--94151563 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
94151466 AATTAAGAAA
94151476 AGAAATTTCATTAGAAAGCAAATTAAAAGATGTTATGTTAGGGT
1 AGAAATTTCATTAGAAAGCAAATTAAAAGATGTTATGTTAGGGT
94151520 AGAAATTTCATTAGAAAGCAAATTAAAAGATGTTATGTTAGGGT
1 AGAAATTTCATTAGAAAGCAAATTAAAAGATGTTATGTTAGGGT
94151564 TCGAAGGGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (44 bp):
AGAAATTTCATTAGAAAGCAAATTAAAAGATGTTATGTTAGGGT
Found at i:94155984 original size:25 final size:23
Alignment explanation
Indices: 94155956--94156001 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
94155946 AGAAAATTCA
94155956 AAATTTTAAAAATAAAAATAATTAC
1 AAATTTT-AAAA-AAAAATAATTAC
*
94155981 AAATTTTGAAAAAAAATAATT
1 AAATTTTAAAAAAAAATAATT
94156002 TTTATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 3 0.15
25 7 0.35
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATTTTAAAAAAAAATAATTAC
Done.