Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 307 of 425
Found at i:95454847 original size:12 final size:12
Alignment explanation
Indices: 95454825--95454853 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
95454815 CAAATGTCTT
95454825 TAAAA-TAATAA
1 TAAAATTAATAA
95454836 TAAAATTAATAA
1 TAAAATTAATAA
95454848 TAAAAT
1 TAAAAT
95454854 AAGTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:95455461 original size:19 final size:19
Alignment explanation
Indices: 95455437--95455475 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
95455427 AGAAGAAAAG
95455437 ACCCTTTAGAACAATCGTT
1 ACCCTTTAGAACAATCGTT
95455456 ACCCTTTAGAACAATCGTT
1 ACCCTTTAGAACAATCGTT
95455475 A
1 A
95455476 AACCTTGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (19 bp):
ACCCTTTAGAACAATCGTT
Found at i:95457457 original size:15 final size:15
Alignment explanation
Indices: 95457416--95457467 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
95457406 GTTATATTAT
*
95457416 AAGTTAAATAATAATA
1 AAGTTAAA-AATAAGA
*
95457432 AAGTAAATAAAATAAGTA
1 AAGT-TA-AAAATAAG-A
95457450 AAGTTAAAAATAAGA
1 AAGTTAAAAATAAGA
95457465 AAG
1 AAG
95457468 CATAAAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 4 0.13
16 12 0.40
17 7 0.23
18 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (15 bp):
AAGTTAAAAATAAGA
Found at i:95461027 original size:47 final size:47
Alignment explanation
Indices: 95460965--95461090 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
95460955 CTTTACATAA
* * * * *
95460965 TGATGCCATAGCCCAGCTATGATCTTACAC-GTAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAC
* * *
95461012 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
* *
95461059 CGATGCCATATCCCAGATATGGTCTTATACAG
1 TGATGCCATATCCCAGATATGGTCTTACACAG
95461091 AAATCACTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 66 0.97
48 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
Found at i:95461106 original size:7 final size:7
Alignment explanation
Indices: 95461094--95461122 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
95461084 TATACAGAAA
95461094 TCACTTG
1 TCACTTG
95461101 TCACTTG
1 TCACTTG
95461108 TCACTTG
1 TCACTTG
95461115 TCACTTG
1 TCACTTG
95461122 T
1 T
95461123 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:95461156 original size:31 final size:31
Alignment explanation
Indices: 95461121--95461328 Score: 290
Period size: 31 Copynumber: 6.7 Consensus size: 31
95461111 CTTGTCACTT
* *
95461121 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
95461152 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95461183 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95461214 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95461245 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95461276 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95461307 GTAGCTGAAGCTACCATTTTTC
1 GTAGCCGAAGCTACCACTTTTC
95461329 GGTTGTCATT
Statistics
Matches: 158, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 158 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:95461398 original size:50 final size:50
Alignment explanation
Indices: 95461334--95461433 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
95461324 TTTTCGGTTG
*
95461334 TCATTTGCCATTGATCAGATAAGTGCAGTCGAAGCTATCACTTATCACTT
1 TCATTTGCCATTGATCAGATAAGTGCAGCCGAAGCTATCACTTATCACTT
*
95461384 TCATTTGTCC-TTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 TCATTTG-CCATTGATCAGATAAGTGCAGCCGAAGCTATCACTTATCACTT
95461434 GTTTTCATGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 45 0.96
51 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (50 bp):
TCATTTGCCATTGATCAGATAAGTGCAGCCGAAGCTATCACTTATCACTT
Found at i:95465350 original size:44 final size:44
Alignment explanation
Indices: 95465300--95465387 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
95465290 CATTCCTTTC
95465300 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
1 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
95465344 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
1 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
95465388 CCATAACAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.43
Consensus pattern (44 bp):
TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
Found at i:95469750 original size:10 final size:10
Alignment explanation
Indices: 95469727--95469786 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
95469717 TAATTTTAGG
95469727 ATTTAT-TTT
1 ATTTATCTTT
*
95469736 CATTTATCTCT
1 -ATTTATCTTT
95469747 ATTTATCTTT
1 ATTTATCTTT
*
95469757 AATTATCTTT
1 ATTTATCTTT
95469767 ATTTAT-TTGT
1 ATTTATCTT-T
95469777 ATTTATCTTT
1 ATTTATCTTT
95469787 TAGAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.86
11 4 0.09
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:95469780 original size:30 final size:30
Alignment explanation
Indices: 95469729--95469786 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
95469719 ATTTTAGGAT
95469729 TTATTTTCATTTATCTCTATTTATCTTTAA
1 TTATTTTCATTTATCTCTATTTATCTTTAA
* *
95469759 TTATCTTT-ATTTATTTGTATTTATCTTT
1 TTAT-TTTCATTTATCTCTATTTATCTTT
95469787 TAGAATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (30 bp):
TTATTTTCATTTATCTCTATTTATCTTTAA
Found at i:95471478 original size:46 final size:46
Alignment explanation
Indices: 95471402--95471669 Score: 358
Period size: 46 Copynumber: 5.8 Consensus size: 46
95471392 TGATGTCATA
* * * * *
95471402 GTATCTTTCAACTATAGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCAGGTTGCCATG
* ** *
95471448 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGTTGCCATG
95471495 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
* * *
95471541 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
* *
95471587 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
* * *
95471633 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
95471670 AGAGCACACT
Statistics
Matches: 205, Mismatches: 15, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
46 166 0.81
47 39 0.19
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
Found at i:95478499 original size:8 final size:8
Alignment explanation
Indices: 95478486--95478517 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
95478476 TTATATATAC
95478486 TAATAAAA
1 TAATAAAA
95478494 TAAT--AA
1 TAATAAAA
95478500 TAATAAAA
1 TAATAAAA
95478508 TAATAAAA
1 TAATAAAA
95478516 TA
1 TA
95478518 TCATATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.27
8 16 0.73
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TAATAAAA
Found at i:95478505 original size:14 final size:14
Alignment explanation
Indices: 95478486--95478517 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
95478476 TTATATATAC
95478486 TAATAAAATAATAA
1 TAATAAAATAATAA
95478500 TAATAAAATAATAA
1 TAATAAAATAATAA
95478514 -AATA
1 TAATA
95478518 TCATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TAATAAAATAATAA
Found at i:95481139 original size:19 final size:19
Alignment explanation
Indices: 95481115--95481152 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
95481105 TACAAATATA
95481115 ATTAATAAAATTATTATTT
1 ATTAATAAAATTATTATTT
*
95481134 ATTAATAAACTTATTATTT
1 ATTAATAAAATTATTATTT
95481153 TAACATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAATAAAATTATTATTT
Found at i:95481160 original size:19 final size:19
Alignment explanation
Indices: 95481118--95481161 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
95481108 AAATATAATT
*
95481118 AATAAAATTATTATTTATT
1 AATAAAATTATTATTTATA
*
95481137 AATAAACTTATTATTT-TA
1 AATAAAATTATTATTTATA
95481155 ACATAAA
1 A-ATAAA
95481162 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
AATAAAATTATTATTTATA
Found at i:95488041 original size:9 final size:9
Alignment explanation
Indices: 95488024--95488060 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
95488014 TGAGTTTTTG
95488024 AATTCGAAT
1 AATTCGAAT
*
95488033 AACTCGAAT
1 AATTCGAAT
95488042 AATTCGAAT
1 AATTCGAAT
95488051 AATTCGAAT
1 AATTCGAAT
95488060 A
1 A
95488061 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:95488136 original size:21 final size:21
Alignment explanation
Indices: 95488094--95488136 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
95488084 TTACCCCAAA
* *
95488094 CTCTCAAACCTTTTGACTTTT
1 CTCTCAAAACTTATGACTTTT
95488115 CTCTCAAAACTTAT-ACTCTTT
1 CTCTCAAAACTTATGACT-TTT
95488136 C
1 C
95488137 CCACTTTCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.44
Consensus pattern (21 bp):
CTCTCAAAACTTATGACTTTT
Found at i:95488324 original size:30 final size:30
Alignment explanation
Indices: 95488275--95488333 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95488265 AACTTTTTAT
*
95488275 TTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTCCCCCAAAACTTTTACTCCCTTCCCAC
95488304 TTTCCCCCTAAAACTTTTACTCCCTTCCCA
1 TTTCCCCC-AAAACTTTTACTCCCTTCCCA
95488334 TCCCACCTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 14 0.52
31 5 0.19
ACGTcount: A:0.20, C:0.44, G:0.00, T:0.36
Consensus pattern (30 bp):
TTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:95488469 original size:19 final size:18
Alignment explanation
Indices: 95488413--95488473 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
95488403 TTACCCTCCA
*
95488413 TTTACTTTCCCTC-AAACT
1 TTTATTTTCCC-CAAAACT
95488431 TTTA--TTCCCCAAAACTT
1 TTTATTTTCCCCAAAAC-T
*
95488448 TTTATTTTCCTCCTAAACT
1 TTTATTTTCC-CCAAAACT
95488467 TTTATTT
1 TTTATTT
95488474 CTCACCCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
15 1 0.03
16 9 0.24
17 5 0.14
18 4 0.11
19 12 0.32
20 6 0.16
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATTTTCCCCAAAACT
Found at i:95489554 original size:26 final size:25
Alignment explanation
Indices: 95489469--95489555 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
95489459 AATATATTAT
95489469 TTTATTAAATTATATTTAATACA-AA
1 TTTATTAAATTATATTTAATA-ATAA
* * * * *
95489494 TTATGTTAAAATATGATTAAATTATTTA
1 TT-TATTAAATTAT-ATTTAA-TAATAA
95489522 TTT-TTAAATTATATTTAATAATAA
1 TTTATTAAATTATATTTAATAATAA
95489546 TCTTATTAAA
1 T-TTATTAAA
95489556 ATTTAATAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
24 5 0.11
25 9 0.19
26 22 0.47
27 6 0.13
28 5 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTATTAAATTATATTTAATAATAA
Found at i:95489555 original size:52 final size:53
Alignment explanation
Indices: 95489398--95489557 Score: 146
Period size: 52 Copynumber: 2.8 Consensus size: 53
95489388 TTATAATATT
* * * *
95489398 ATATATTTTATTTTTATTAATTCATATTTTAATAATATTTCTATTAAGAATGTTATTAA
1 ATATA-TTTATTTTTA--AATT-ATA-TTTAATAATAATTATATTAA-AATATGATTAA
*
95489457 ATAATATATTATTTTATTAAATTATATTTAATACA-AATTATGTTAAAATATGATTAA
1 AT-ATAT-TTA-TTT-TTAAATTATATTTAATA-ATAATTATATTAAAATATGATTAA
95489514 AT-TATTTATTTTTAAATTATATTTAATAATAATCT-TATTAAAAT
1 ATATATTTATTTTTAAATTATATTTAATAATAAT-TATATTAAAAT
95489558 TTAATAACAA
Statistics
Matches: 88, Mismatches: 6, Indels: 21
0.77 0.05 0.18
Matches are distributed among these distances:
51 1 0.01
52 28 0.32
53 4 0.05
54 3 0.03
55 3 0.03
57 11 0.12
58 15 0.17
59 7 0.08
60 10 0.11
61 3 0.03
62 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (53 bp):
ATATATTTATTTTTAAATTATATTTAATAATAATTATATTAAAATATGATTAA
Found at i:95489749 original size:16 final size:16
Alignment explanation
Indices: 95489728--95489762 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
95489718 ATTACTGATA
*
95489728 ACAGTTCTATTCTATT
1 ACAGTTCTATTCCATT
95489744 ACAGTTCTATTCCATT
1 ACAGTTCTATTCCATT
95489760 ACA
1 ACA
95489763 ACCCTATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.43
Consensus pattern (16 bp):
ACAGTTCTATTCCATT
Found at i:95496074 original size:39 final size:39
Alignment explanation
Indices: 95496020--95496098 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
95496010 TCACCGTTCA
**
95496020 TGGAATTAGAATTCTGAATTTTTTGTATAATTTCTCCAT
1 TGGAATTAGAATTCTGAATTTTGCGTATAATTTCTCCAT
*
95496059 TGGAATTAGAATTCTGAATTTTGCGTATGATTTCTCCAT
1 TGGAATTAGAATTCTGAATTTTGCGTATAATTTCTCCAT
95496098 T
1 T
95496099 CCCGATGGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (39 bp):
TGGAATTAGAATTCTGAATTTTGCGTATAATTTCTCCAT
Found at i:95499801 original size:13 final size:13
Alignment explanation
Indices: 95499783--95499814 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
95499773 AGGGACACGC
95499783 CCATGTCCTCAGG
1 CCATGTCCTCAGG
95499796 CCATGTCCTCAGG
1 CCATGTCCTCAGG
95499809 CCATGT
1 CCATGT
95499815 AACTCTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.16, C:0.38, G:0.22, T:0.25
Consensus pattern (13 bp):
CCATGTCCTCAGG
Found at i:95501805 original size:49 final size:49
Alignment explanation
Indices: 95501698--95501953 Score: 259
Period size: 49 Copynumber: 5.2 Consensus size: 49
95501688 GGTACGATGC
* * * * * **
95501698 CGATGCCATGTTCCAAACATGGTCTTACACTG--GCTCACACATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCTGGGT
* * * * *
95501746 CGATGCCATGTCCCAGGCAGGTCTTACACTAACTTTCGTATATC-GAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCTG-GGT
* * * *
95501795 CGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCTGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCTGGGT
* * *
95501844 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCTGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCTGGGT
* *
95501893 CGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATC-GAGGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCTG-GGT
*
95501942 TGATGCCATGTC
1 CGATGCCATGTC
95501954 TTATACTAGC
Statistics
Matches: 175, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
47 11 0.06
48 17 0.10
49 146 0.83
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCTGGGT
Found at i:95501947 original size:98 final size:97
Alignment explanation
Indices: 95501696--95502193 Score: 301
Period size: 98 Copynumber: 5.3 Consensus size: 97
95501686 AGGGTACGAT
* * * *
95501696 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC-TCACACATCTAAGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTTCATATATCGAAGTCGATGCCATGTCCC
* * *
95501760 AGGCAGGTCTTACACTAACTTTCGTATATCGAG
65 AGACAGGTCTTACACTAACTCTCATATATCGAG
* * * *
95501793 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCTG-TGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCT-TCATATATC-GAAGTCGATGCCATGTCC
** * *
95501857 CAGACAGGTCTTACACTGGCTCTCATCTATCTG-T
64 CAGACAGGTCTTACACTAACTCTCATATATC-GAG
* * *
95501891 GTCGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCG-AG--GTTG--ATG---C
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGC-TTCATATATCGAAGTCGATGCCATGTCCC
* * * * *
95501948 ---CATGTCTTATACTAGCTCTCATCTATCGGG
65 AGACAGGTCTTACACTAACTCTCATATATCGAG
* * * * * * * *
95501978 GTCGATGCCATGTCCTAGATAGGTCTTACACT-G--ACACATGTC-AAGCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTTCATATATCGAAGTCGATGCCATGTCCCA
* * * *
95502039 GACAGGTTTTATACTAGCT-TGCATATCTCGAG
66 GACAGGTCTTACACTAACTCT-CATATATCGAG
* * * * * * * *
95502071 GCCGATG-CATGTCCTAGACATGTCTTATACTGGC-TCTTGTCTC-AATGCCGATG-CATGTCCC
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTTCATATATCGAA-GTCGATGCCATGTCCC
* ** *
95502132 AGACATGTCTTACACTGGCTCTCATA-AT-GCG
65 AGACAGGTCTTACACTAACTCTCATATATCGAG
* * *
95502163 GCCGATG-CATGTCACAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAAACAGGTCTTACACT
95502194 AGCGCACATA
Statistics
Matches: 322, Mismatches: 57, Indels: 49
0.75 0.13 0.11
Matches are distributed among these distances:
83 8 0.02
85 3 0.01
86 1 0.00
87 56 0.17
90 2 0.01
92 52 0.16
93 34 0.11
94 34 0.11
95 11 0.03
96 14 0.04
97 20 0.06
98 85 0.26
99 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTTCATATATCGAAGTCGATGCCATGTCCCA
GACAGGTCTTACACTAACTCTCATATATCGAG
Found at i:95502097 original size:92 final size:93
Alignment explanation
Indices: 95501951--95502193 Score: 264
Period size: 92 Copynumber: 2.6 Consensus size: 93
95501941 TTGATGCCAT
* * * * *
95501951 GTCTTATACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCTAGATAGGTCTTACACTGACACA
1 GTCTTATACTAGCTCTCATATATCGAGGCCGATG-CATGTCCTAGACATGTCTTACACTGACACA
95502016 TG-TCAA-GCCGATGCCATGTCCCAGACAG
65 TGCTCAATGCCGATG-CATGTCCCAGACAG
* * * * * *
95502044 GTTTTATACTAGCT-TGCATATCTCGAGGCCGATGCATGTCCTAGACATGTCTTATACTGGCTCT
1 GTCTTATACTAGCTCT-CATATATCGAGGCCGATGCATGTCCTAGACATGTCTTACACTGACACA
*
95502108 TGTCTCAATGCCGATGCATGTCCCAGACAT
65 TG-CTCAATGCCGATGCATGTCCCAGACAG
* * *
95502138 GTCTTACACTGGCTCTCATA-AT-GCGGCCGATGCATGTCAC-AGACATGTCTTACACT
1 GTCTTATACTAGCTCTCATATATCGAGGCCGATGCATGTC-CTAGACATGTCTTACACT
95502194 AGCGCACATA
Statistics
Matches: 126, Mismatches: 18, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
92 57 0.45
93 29 0.23
94 32 0.25
95 8 0.06
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (93 bp):
GTCTTATACTAGCTCTCATATATCGAGGCCGATGCATGTCCTAGACATGTCTTACACTGACACAT
GCTCAATGCCGATGCATGTCCCAGACAG
Found at i:95502136 original size:46 final size:45
Alignment explanation
Indices: 95502018--95502189 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 45
95502008 CTGACACATG
* * * *
95502018 TCAAGCCGATGCCATGTCCCAGACAGGTTTTATACTAGCTTGCATATC
1 TCAAGCCGATG-CATGTCCCAGACATGTCTTATACTGGC-T-CTTATC
* * *
95502066 TCGAGGCCGATGCATGTCCTAGACATGTCTTATACTGGCTCTTGTC
1 TC-AAGCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTATC
* * *
95502112 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAA
1 TCAA-GCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTAT-C
* *
95502159 TGC-GGCCGATGCATGTCACAGACATGTCTTA
1 T-CAAGCCGATGCATGTCCCAGACATGTCTTA
95502190 CACTAGCGCA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 2 0.02
48 26 0.25
49 8 0.08
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (45 bp):
TCAAGCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTATC
Found at i:95502884 original size:20 final size:20
Alignment explanation
Indices: 95502859--95502897 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
95502849 AAAATTTCAA
95502859 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
95502879 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
95502898 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:95504484 original size:212 final size:212
Alignment explanation
Indices: 95504117--95504541 Score: 805
Period size: 212 Copynumber: 2.0 Consensus size: 212
95504107 ACCACTTGAA
95504117 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
1 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
*
95504182 GTCACACGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTTAGT
66 GTCACACGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
* *
95504247 GTCGATGCCATGTCCTAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAAACATG
131 GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAAACATG
95504312 GTCTTATACGAAATCAC
196 GTCTTATACGAAATCAC
95504329 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
1 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
*
95504394 GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
66 GTCACACGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
*
95504459 GTCGACGCTATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAAACATG
131 GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAAACATG
95504524 GTCTTATACGAAATCAC
196 GTCTTATACGAAATCAC
95504541 T
1 T
95504542 TAACGACACC
Statistics
Matches: 208, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
212 208 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (212 bp):
TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
GTCACACGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAAACATG
GTCTTATACGAAATCAC
Found at i:95506351 original size:37 final size:37
Alignment explanation
Indices: 95506299--95506389 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
95506289 AGGAGTTATG
*
95506299 ATCTTAAATCAGCTAACTTAAAGATGAATAGGTTGCA
1 ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
* **
95506336 ATCTTAAATCGGCTAACTCAAAGATGAATAGGTTGTG
1 ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
95506373 ATCTTAAATCAGCTAAC
1 ATCTTAAATCAGCTAAC
95506390 CTTTGTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (37 bp):
ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
Found at i:95510839 original size:43 final size:43
Alignment explanation
Indices: 95510792--95510929 Score: 170
Period size: 43 Copynumber: 3.2 Consensus size: 43
95510782 TTTTTAGAGG
* *
95510792 CGCTTTTCCCACAAATACCGCTAAAAAACATGACCTTTAGCGA
1 CGCTTTTCCCACAAATGCCGCTAAAAAACCTGACCTTTAGCGA
*
95510835 CGC-TTTCTCTACAAATGCCGCTAAAAAACCTGACCTTTAGCGA
1 CGCTTTTC-CCACAAATGCCGCTAAAAAACCTGACCTTTAGCGA
* * * * * *
95510878 TGCTCTCCCCACAAACGCCGCTAAAAAACCTGACTTTTAGCGG
1 CGCTTTTCCCACAAATGCCGCTAAAAAACCTGACCTTTAGCGA
*
95510921 CACTTTTCC
1 CGCTTTTCC
95510930 AAAAACACCA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
42 4 0.05
43 73 0.92
44 2 0.03
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.25
Consensus pattern (43 bp):
CGCTTTTCCCACAAATGCCGCTAAAAAACCTGACCTTTAGCGA
Found at i:95511984 original size:206 final size:207
Alignment explanation
Indices: 95511670--95512063 Score: 655
Period size: 206 Copynumber: 1.9 Consensus size: 207
95511660 ACAACATTTA
* *
95511670 AACACTTCAATTTGCAGCACTTCAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
1 AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
* * *
95511735 TTTATACTCCTCAATTACAGTGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
66 TTTATACACCTCAATTACAGCGATAAAACATCTCAAATTCCAGCAACTAAACACTTCAATTTGCA
* *
95511800 GTACTT-AAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTCAAACACTCCAAT
131 ATACTTAAAACACTTCAAGTTACAACATTTAAACACTTCAATTTACAACATTCAAACACTCCAAT
95511864 TTGCAGCACTTT
196 TTGCAGCACTTT
* * *
95511876 AACACTTCAATTTATAGCATTTAAACACTTCAATTTGCTGCACTTTAACATCTCAATTAACAACA
1 AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
*
95511941 TTTATACACCTCAATTACAGCGATAAAACATCTCAAATTCCAGCAACTAACCACTTCAATTTGCA
66 TTTATACACCTCAATTACAGCGATAAAACATCTCAAATTCCAGCAACTAAACACTTCAATTTGCA
* * *
95512006 ATACTTAAAACACTTCAAGTTACAACATTTAAACAGTTCAATTTACAGCATTTAAACA
131 ATACTTAAAACACTTCAAGTTACAACATTTAAACACTTCAATTTACAACATTCAAACA
95512064 GCAGCAACCA
Statistics
Matches: 173, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
206 126 0.73
207 47 0.27
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.31
Consensus pattern (207 bp):
AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
TTTATACACCTCAATTACAGCGATAAAACATCTCAAATTCCAGCAACTAAACACTTCAATTTGCA
ATACTTAAAACACTTCAAGTTACAACATTTAAACACTTCAATTTACAACATTCAAACACTCCAAT
TTGCAGCACTTT
Found at i:95512064 original size:23 final size:23
Alignment explanation
Indices: 95511622--95512063 Score: 278
Period size: 23 Copynumber: 19.3 Consensus size: 23
95511612 TTTCAGCAAC
* * *
95511622 TAAACAATTCAATTTGCAGTACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
95511646 GAAA-ACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
95511668 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
95511691 TCAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
95511715 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* * * *
95511737 TATACTCCTCAA-TTACAGTGA-T
1 TAAACACTTCAATTTACAG-CATT
* * **
95511759 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
95511782 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
95511805 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
95511828 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* * *
95511851 CAAACACTCCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
*
95511875 T-AACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
95511897 TAAACACTTCAATTTGCTGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
95511921 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
95511943 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * * **
95511965 AAAACA-TCTCAAATTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * **
95511988 TAACCACTTCAATTTGCAATACTT
1 TAAACACTTCAATTTACAGCA-TT
* * *
95512012 AAAACACTTCAAGTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
95512035 TAAACAGTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
95512058 TAAACA
1 TAAACA
95512064 GCAGCAACCA
Statistics
Matches: 319, Mismatches: 77, Indels: 45
0.72 0.17 0.10
Matches are distributed among these distances:
22 44 0.14
23 247 0.77
24 28 0.09
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:95516338 original size:7 final size:7
Alignment explanation
Indices: 95516279--95516338 Score: 66
Period size: 7 Copynumber: 8.3 Consensus size: 7
95516269 CTCAAACACC
95516279 AACCATTA
1 AACCA-TA
95516287 AACCATA
1 AACCATA
95516294 AACCATA
1 AACCATA
95516301 AACCATA
1 AACCATA
* *
95516308 ATCCCTA
1 AACCATA
95516315 AACCTATA
1 AACC-ATA
*
95516323 ATCCATA
1 AACCATA
*
95516330 AACCTTA
1 AACCATA
95516337 AA
1 AA
95516339 ATAGTAACTT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
7 34 0.77
8 10 0.23
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (7 bp):
AACCATA
Found at i:95517067 original size:26 final size:24
Alignment explanation
Indices: 95517037--95517086 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
95517027 AAATAAAAAA
*
95517037 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
95517063 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
95517087 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:95517106 original size:21 final size:21
Alignment explanation
Indices: 95517057--95517115 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
95517047 ATAATAAATC
*
95517057 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
95517077 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
95517099 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
95517116 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:95517514 original size:40 final size:40
Alignment explanation
Indices: 95517381--95517514 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 40
95517371 TATGGTCGAC
* * * * *
95517381 CTATAGTGGTGTTTTTTAAAAAGTGCCGCTAAT-CTCGAT
1 CTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAAT
** *
95517420 CTATAGCGGCG-TTTTCAAAAAGCGTTGCTAATGCTCTAT
1 CTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAAT
** * *
95517459 CTATAGCATCATTTTTCAAAAAGCACCGCTAATGCTCAAT
1 CTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAAT
*
95517499 TTATAGCGGCGTTTTT
1 CTATAGCGGCGTTTTT
95517515 TATCCAAACG
Statistics
Matches: 75, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
38 17 0.23
39 22 0.29
40 36 0.48
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (40 bp):
CTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAAT
Found at i:95520304 original size:2 final size:2
Alignment explanation
Indices: 95520297--95520324 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
95520287 CCCAAGCTGA
95520297 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95520325 GTCAGTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95531495 original size:16 final size:18
Alignment explanation
Indices: 95531465--95531497 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95531455 ATATTTATAT
95531465 TAAAATATAATAAAATAC
1 TAAAATATAATAAAATAC
95531483 TAAAATA-AA-AAAATA
1 TAAAATATAATAAAATA
95531498 TTATAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAATATAATAAAATAC
Found at i:95531505 original size:16 final size:18
Alignment explanation
Indices: 95531429--95531506 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 18
95531419 TAATTTAAAA
95531429 TAAAATATAATAAAATTAT
1 TAAAATATAATAAAA-TAT
* **
95531448 TCAAA-A-AATATTTATAT
1 TAAAATATAATA-AAATAT
*
95531465 TAAAATATAATAAAATAC
1 TAAAATATAATAAAATAT
95531483 TAAAATA-AA-AAAATAT
1 TAAAATATAATAAAATAT
*
95531499 TATAATAT
1 TAAAATAT
95531507 TTAATTTTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
16 12 0.26
17 13 0.28
18 13 0.28
19 8 0.17
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAATATAATAAAATAT
Found at i:95531616 original size:26 final size:27
Alignment explanation
Indices: 95531581--95531632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
95531571 TATTATTACT
*
95531581 TTTTTTTAAAATAAT-AAAATATACAA
1 TTTTATTAAAATAATAAAAATATACAA
95531607 TTTTATTAAAATAATAAAAATATACA
1 TTTTATTAAAATAATAAAAATATACA
95531633 TTTAAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
TTTTATTAAAATAATAAAAATATACAA
Found at i:95531647 original size:27 final size:26
Alignment explanation
Indices: 95531587--95531640 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
95531577 TACTTTTTTT
* *
95531587 TAAAATAATAAAATATACAATTTTAT
1 TAAAATAATAAAATATACAATTTAAA
95531613 TAAAATAATAAAAATATAC-ATTTAAA
1 TAAAATAAT-AAAATATACAATTTAAA
95531639 TA
1 TA
95531641 TATATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAAATAATAAAATATACAATTTAAA
Found at i:95531687 original size:34 final size:33
Alignment explanation
Indices: 95531634--95531703 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
95531624 AAATATACAT
95531634 TTAAATATATATAAATATATAAATAACAATATA
1 TTAAATATATATAAATATATAAATAACAATATA
* **
95531667 TTAAAT-TATATAATATTATATTAATATTAATATA
1 TTAAATATATATAA-A-TATATAAATAACAATATA
95531701 TTA
1 TTA
95531704 TTAAAATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 7 0.22
33 7 0.22
34 18 0.56
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (33 bp):
TTAAATATATATAAATATATAAATAACAATATA
Found at i:95531848 original size:21 final size:20
Alignment explanation
Indices: 95531823--95531864 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
95531813 AAATAATAAA
*
95531823 ATATATTTTTTATTAATATTT
1 ATATATTTTATATTAA-ATTT
95531844 ATATATTTTATATTAAATTT
1 ATATATTTTATATTAAATTT
95531864 A
1 A
95531865 AATAAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATATTTTATATTAAATTT
Found at i:95540736 original size:18 final size:18
Alignment explanation
Indices: 95540709--95540745 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
95540699 TTGATTTTCG
*
95540709 AATTCAAATAAATCGAAT
1 AATTCAAATAAACCGAAT
*
95540727 AATTCGAATAAACCGAAT
1 AATTCAAATAAACCGAAT
95540745 A
1 A
95540746 CCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.24
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:95540824 original size:19 final size:21
Alignment explanation
Indices: 95540779--95540824 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
95540769 TTACCCCAAA
*
95540779 CTCCCAAACCTCTTTACTTTC
1 CTCCCAAAACTCTTTACTTTC
*
95540800 CACCCAAAACT-TTTAC-TTC
1 CTCCCAAAACTCTTTACTTTC
95540819 CTCCCA
1 CTCCCA
95540825 CTTTCCCTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 8 0.36
20 5 0.23
21 9 0.41
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (21 bp):
CTCCCAAAACTCTTTACTTTC
Found at i:95542884 original size:18 final size:18
Alignment explanation
Indices: 95542859--95542909 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
95542849 AAATGACAAA
*
95542859 AAATGAGAAATGAATATG
1 AAATGAGAAATGAATACG
*
95542877 AGATGAGAAATGAAATACG
1 AAATGAGAAATG-AATACG
95542896 AAATGATGAAATGA
1 AAATGA-GAAATGA
95542910 GATGTGAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 11 0.39
20 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.20
Consensus pattern (18 bp):
AAATGAGAAATGAATACG
Found at i:95543321 original size:18 final size:18
Alignment explanation
Indices: 95543296--95543346 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
95543286 AAATGACAAA
*
95543296 AAATGAGAAATGAATATG
1 AAATGAGAAATGAATACG
*
95543314 AGATGAGAAATGAAATACG
1 AAATGAGAAATG-AATACG
95543333 AAATGATGAAATGA
1 AAATGA-GAAATGA
95543347 GATGTGAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 11 0.39
20 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.20
Consensus pattern (18 bp):
AAATGAGAAATGAATACG
Found at i:95543471 original size:437 final size:437
Alignment explanation
Indices: 95542657--95543531 Score: 1705
Period size: 437 Copynumber: 2.0 Consensus size: 437
95542647 GGCACTGGGT
*
95542657 TCCAATTTGCTTCAGTTTAACTGATGAGACACCGGGTGTCAACTTATATAGTGCTGGGCGCAATT
1 TCCAATTTGCTTCAGTTTAACTAATGAGACACCGGGTGTCAACTTATATAGTGCTGGGCGCAATT
*
95542722 ATTACTTCGGATTTATTCAATGAGGCACTGGGTGCCAAACTGGTCTGTTGGCTGCATTCGTGTAT
66 ATTACTTCGGATTTATTCAATGAGGCACTGGGTGCCAAACTGGTCTGTTGGCTGCATCCGTGTAT
95542787 CCGTCTGAGTCTGAGTCGTGTTAATAGGGAAATTAAATAATAAATTTATGTGTTTGATATTAAAA
131 CCGTCTGAGTCTGAGTCGTGTTAATAGGGAAATTAAATAATAAATTTATGTGTTTGATATTAAAA
95542852 TGACAAAAAATGAGAAATGAATATGAGATGAGAAATGAAATACGAAATGATGAAATGAGATGTGA
196 TGACAAAAAATGAGAAATGAATATGAGATGAGAAATGAAATACGAAATGATGAAATGAGATGTGA
*
95542917 ATTGTGAAATGAAATCAAGTATTGATCAAAGAGTTGGATCATGTCATTGCATGAGTTGAGATTAA
261 ATTGTGAAATGAAATCAAGTATTGACCAAAGAGTTGGATCATGTCATTGCATGAGTTGAGATTAA
*
95542982 CAAATGCTATATGAAAAATGGCATTATGAGAGTTATTTATCAAATGCCTTCTTAAAGGCTATTAT
326 CAAATGCTATATGAAAAATAGCATTATGAGAGTTATTTATCAAATGCCTTCTTAAAGGCTATTAT
95543047 GAATGTGAATATTGGTGAATAGAGTTAGCATAATAAATTTGATATAC
391 GAATGTGAATATTGGTGAATAGAGTTAGCATAATAAATTTGATATAC
95543094 TCCAATTTGCTTCAGTTTAACTAATGAGACACCGGGTGTCAACTTATATAGTGCTGGGCGCAATT
1 TCCAATTTGCTTCAGTTTAACTAATGAGACACCGGGTGTCAACTTATATAGTGCTGGGCGCAATT
*
95543159 ATTACTTCGGATTTATTCGATGAGGCACTGGGTGCCAAACTGGTCTGTTGGCTGCATCCGTGTAT
66 ATTACTTCGGATTTATTCAATGAGGCACTGGGTGCCAAACTGGTCTGTTGGCTGCATCCGTGTAT
95543224 CCGTCTGAGTCTGAGTCGTGTTAATAGGGAAATTAAATAATAAATTTATGTGTTTGATATTAAAA
131 CCGTCTGAGTCTGAGTCGTGTTAATAGGGAAATTAAATAATAAATTTATGTGTTTGATATTAAAA
95543289 TGACAAAAAATGAGAAATGAATATGAGATGAGAAATGAAATACGAAATGATGAAATGAGATGTGA
196 TGACAAAAAATGAGAAATGAATATGAGATGAGAAATGAAATACGAAATGATGAAATGAGATGTGA
95543354 ATTGTGAAATGAAATCAAGTATTGACCAAAGAGTTGGATCATGTCATTGCATGAGTTGAGATTAA
261 ATTGTGAAATGAAATCAAGTATTGACCAAAGAGTTGGATCATGTCATTGCATGAGTTGAGATTAA
95543419 CAAATGCTATATGAAAAATAGCATTATGAGAGTTATTTATCAAATGCCTTCTTAAAGGCTATTAT
326 CAAATGCTATATGAAAAATAGCATTATGAGAGTTATTTATCAAATGCCTTCTTAAAGGCTATTAT
95543484 GAATGTGAATATTGGTGAATAGAGTTAGCATAATAAATTTGATATAC
391 GAATGTGAATATTGGTGAATAGAGTTAGCATAATAAATTTGATATAC
95543531 T
1 T
95543532 ACATGACATT
Statistics
Matches: 433, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
437 433 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (437 bp):
TCCAATTTGCTTCAGTTTAACTAATGAGACACCGGGTGTCAACTTATATAGTGCTGGGCGCAATT
ATTACTTCGGATTTATTCAATGAGGCACTGGGTGCCAAACTGGTCTGTTGGCTGCATCCGTGTAT
CCGTCTGAGTCTGAGTCGTGTTAATAGGGAAATTAAATAATAAATTTATGTGTTTGATATTAAAA
TGACAAAAAATGAGAAATGAATATGAGATGAGAAATGAAATACGAAATGATGAAATGAGATGTGA
ATTGTGAAATGAAATCAAGTATTGACCAAAGAGTTGGATCATGTCATTGCATGAGTTGAGATTAA
CAAATGCTATATGAAAAATAGCATTATGAGAGTTATTTATCAAATGCCTTCTTAAAGGCTATTAT
GAATGTGAATATTGGTGAATAGAGTTAGCATAATAAATTTGATATAC
Found at i:95546181 original size:18 final size:19
Alignment explanation
Indices: 95546158--95546227 Score: 83
Period size: 18 Copynumber: 3.7 Consensus size: 19
95546148 ACATTAGGCA
95546158 TAATTTTA-GTAAAATGTG
1 TAATTTTATGTAAAATGTG
*
95546176 TAATTTTATGTAATTAA-GTAT
1 TAATTTTATGTAA--AATGT-G
95546197 TAATTTTA-GTAAAATGTG
1 TAATTTTATGTAAAATGTG
95546215 TAATTTTATGTAA
1 TAATTTTATGTAA
95546228 TTAAGTATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
18 18 0.41
19 10 0.23
20 6 0.14
21 10 0.23
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.49
Consensus pattern (19 bp):
TAATTTTATGTAAAATGTG
Found at i:95546212 original size:39 final size:39
Alignment explanation
Indices: 95546158--95546243 Score: 172
Period size: 39 Copynumber: 2.2 Consensus size: 39
95546148 ACATTAGGCA
95546158 TAATTTTAGTAAAATGTGTAATTTTATGTAATTAAGTAT
1 TAATTTTAGTAAAATGTGTAATTTTATGTAATTAAGTAT
95546197 TAATTTTAGTAAAATGTGTAATTTTATGTAATTAAGTAT
1 TAATTTTAGTAAAATGTGTAATTTTATGTAATTAAGTAT
95546236 TAATTTTA
1 TAATTTTA
95546244 CATAATTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (39 bp):
TAATTTTAGTAAAATGTGTAATTTTATGTAATTAAGTAT
Found at i:95546250 original size:21 final size:21
Alignment explanation
Indices: 95546176--95546243 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
95546166 GTAAAATGTG
95546176 TAATTTTATGTAATTAAGTAT
1 TAATTTTATGTAATTAAGTAT
*
95546197 TAATTTTA-GTAA--AATGT-G
1 TAATTTTATGTAATTAA-GTAT
95546215 TAATTTTATGTAATTAAGTAT
1 TAATTTTATGTAATTAAGTAT
95546236 TAATTTTA
1 TAATTTTA
95546244 CATAATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
18 10 0.25
19 6 0.15
20 6 0.15
21 18 0.45
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (21 bp):
TAATTTTATGTAATTAAGTAT
Found at i:95547168 original size:19 final size:19
Alignment explanation
Indices: 95547144--95547183 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
95547134 AAAATCATTC
95547144 ATGTTATTCATGCATTAAA
1 ATGTTATTCATGCATTAAA
95547163 ATGTTATTCATGCATTAAA
1 ATGTTATTCATGCATTAAA
95547182 AT
1 AT
95547184 ATGTTTGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
ATGTTATTCATGCATTAAA
Found at i:95549371 original size:9 final size:9
Alignment explanation
Indices: 95549357--95549383 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
95549347 AAACATATTT
95549357 TTCATTTTA
1 TTCATTTTA
95549366 TTCATTTTA
1 TTCATTTTA
95549375 TTCATTTTA
1 TTCATTTTA
95549384 GTACCTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (9 bp):
TTCATTTTA
Found at i:95550186 original size:44 final size:44
Alignment explanation
Indices: 95550123--95550213 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
95550113 TACTCTATTT
95550123 TTAGTTTCCCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
* * * *
95550167 TTAGTTTCCCACTTAAACTCTGATTATTTTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
95550211 TTA
1 TTA
95550214 TTTGACCTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
Found at i:95551894 original size:42 final size:43
Alignment explanation
Indices: 95551791--95551901 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
95551781 ATTAAGTAAC
* * * *
95551791 CCGAGCTCGTTGAGCGGTCCGAGTTCGTGATATGTATGAAATT
1 CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAAATT
* * * **
95551834 TCGAACTTGTTGAGTGGTCCAAGTTCGTGAGATATATGGCA-T
1 CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAAATT
95551876 CCGAGCTTGTTGAGTGGTCCGAGTTC
1 CCGAGCTTGTTGAGTGGTCCGAGTTC
95551902 ATTATGGATG
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.32
Consensus pattern (43 bp):
CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAAATT
Found at i:95551933 original size:43 final size:43
Alignment explanation
Indices: 95551872--95551957 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
95551862 GAGATATATG
* *
95551872 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
*
95551915 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
95551958 TGCCTGTGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.29
Consensus pattern (43 bp):
GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
Found at i:95556977 original size:15 final size:16
Alignment explanation
Indices: 95556947--95556977 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95556937 GTATAATGGG
95556947 GGTTTGGAGTGGAGAT
1 GGTTTGGAGTGGAGAT
95556963 GGTTTGGAG-GGAGAT
1 GGTTTGGAGTGGAGAT
95556978 ATCGGCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.19, C:0.00, G:0.52, T:0.29
Consensus pattern (16 bp):
GGTTTGGAGTGGAGAT
Found at i:95557119 original size:19 final size:21
Alignment explanation
Indices: 95557062--95557121 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
95557052 TGGGTGGATT
95557062 AGCTCTTACGAGCTTCTGTTC
1 AGCTCTTACGAGCTTCTGTTC
*
95557083 AGCTCTTACGAGCATCTGTTC
1 AGCTCTTACGAGCTTCTGTTC
*
95557104 AGCT-TT-TGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
95557122 GGCGTATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 10 0.28
20 2 0.06
21 24 0.67
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTC
Found at i:95558048 original size:12 final size:12
Alignment explanation
Indices: 95558031--95558056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95558021 GCTATTACAT
95558031 GGCCTAGCACAC
1 GGCCTAGCACAC
95558043 GGCCTAGCACAC
1 GGCCTAGCACAC
95558055 GG
1 GG
95558057 GCGTATGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:95558794 original size:22 final size:22
Alignment explanation
Indices: 95558738--95558787 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
95558728 TCCTAGAAAG
*
95558738 ATAACCCATTACACATTTAGGT
1 ATAACCCTTTACACATTTAGGT
95558760 ATAACCCTTTACACATTTAGGT
1 ATAACCCTTTACACATTTAGGT
95558782 ACTAAC
1 A-TAAC
95558788 TTTTACAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (22 bp):
ATAACCCTTTACACATTTAGGT
Found at i:95564552 original size:20 final size:20
Alignment explanation
Indices: 95564529--95564568 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
95564519 GGGGGACTTA
95564529 ATGTTTCTTAAGGTCTCTCC
1 ATGTTTCTTAAGGTCTCTCC
95564549 ATGTTTCTTAAGGTCTCTCC
1 ATGTTTCTTAAGGTCTCTCC
95564569 GTGGAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45
Consensus pattern (20 bp):
ATGTTTCTTAAGGTCTCTCC
Found at i:95577157 original size:40 final size:40
Alignment explanation
Indices: 95577102--95577311 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
95577092 AACATTGGAA
95577102 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95577142 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95577182 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
95577222 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
95577261 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
95577302 CTATATCCGG
1 ATATATCCGG
95577312 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:95585286 original size:40 final size:40
Alignment explanation
Indices: 95585231--95585440 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
95585221 AACATTGGAA
95585231 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95585271 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95585311 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
95585351 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
95585390 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
95585431 CTATATCCGG
1 ATATATCCGG
95585441 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:95593413 original size:40 final size:40
Alignment explanation
Indices: 95593358--95593567 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
95593348 AACATTGGAA
95593358 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95593398 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
95593438 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
95593478 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
95593517 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
95593558 CTATATCCGG
1 ATATATCCGG
95593568 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:95600938 original size:41 final size:41
Alignment explanation
Indices: 95600877--95600959 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
95600867 AAGTAATTTT
* *
95600877 ACAGATCCATTAACTGAAATCAGCCCCTAATATTCCATAGA
1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
*
95600918 ACAGATCCATTAACTAAAATCAACCCTTAATATTCCATAGA
1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
95600959 A
1 A
95600960 TAGACACCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (41 bp):
ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
Found at i:95603670 original size:91 final size:90
Alignment explanation
Indices: 95603570--95603744 Score: 255
Period size: 92 Copynumber: 1.9 Consensus size: 90
95603560 GCAATTAAGC
*
95603570 CCTTTTTTTTT-ACTCAATTGAGCATTTAAACTTTCAAAATGCATCAAAAA-AGCCCTCAAACTT
1 CCTTTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGA-CCCTCAAA-TT
95603633 CTTTAAAAAAAGCAATTAAGCCCTTGCT
64 CTTTAAAAAAA-CAATTAAGCCCTTGCT
* * *
95603661 CCTTTTTTTTTCACTCAATTGGGTACTTAAACTTTCAAAATGCATCAAAAAGACCCTCAAATTTT
1 CCTTTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGACCCTCAAATTCT
* *
95603726 TTCAAGAAACAATTAAGCC
66 TTAAAAAAACAATTAAGCC
95603745 ACCTCTCTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
90 10 0.13
91 21 0.28
92 44 0.58
93 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (90 bp):
CCTTTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAGACCCTCAAATTCT
TTAAAAAAACAATTAAGCCCTTGCT
Found at i:95603825 original size:19 final size:18
Alignment explanation
Indices: 95603792--95603869 Score: 61
Period size: 18 Copynumber: 4.2 Consensus size: 18
95603782 ATAAAAAGAA
*
95603792 TAAATTTTAGA-AAAATTAT
1 TAAATTTTA-ATAAAAAT-T
95603811 TAAATTTTAATAAAAATT
1 TAAATTTTAATAAAAATT
* *
95603829 TAAAATTTATTAAAAA-T
1 TAAATTTTAATAAAAATT
* *
95603846 TAGATTTTTTATAAAAATT
1 TA-AATTTTAATAAAAATT
95603865 GTAAA
1 -TAAA
95603870 AAATAAAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
17 3 0.06
18 26 0.55
19 16 0.34
20 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
TAAATTTTAATAAAAATT
Found at i:95603873 original size:10 final size:10
Alignment explanation
Indices: 95603854--95603904 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
95603844 ATTAGATTTT
95603854 TTAT-AAAAA
1 TTATAAAAAA
*
95603863 TTGTAAAAAA
1 TTATAAAAAA
95603873 -TA-AAAAAA
1 TTATAAAAAA
95603881 TTTATAAAAAA
1 -TTATAAAAAA
*
95603892 TCATAAAAAA
1 TTATAAAAAA
95603902 TTA
1 TTA
95603905 ACAACCCTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
8 6 0.18
9 4 0.12
10 18 0.53
11 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:95604039 original size:12 final size:10
Alignment explanation
Indices: 95604026--95604139 Score: 55
Period size: 10 Copynumber: 11.9 Consensus size: 10
95604016 TTTTGGTATA
95604026 ATAA-TTTTT
1 ATAATTTTTT
95604035 ATAATTTTTT
1 ATAATTTTTT
*
95604045 AT-A-TTTCT
1 ATAATTTTTT
* *
95604053 AT-GTATTTT
1 ATAATTTTTT
95604062 ATAATTTTTT
1 ATAATTTTTT
**
95604072 ACGA-TTTTT
1 ATAATTTTTT
**
95604081 ATAAAATTTT
1 ATAATTTTTT
*
95604091 A-CATTTTTT
1 ATAATTTTTT
95604100 AT--TTTTTT
1 ATAATTTTTT
* *
95604108 AAGAATTTTAT
1 -ATAATTTTTT
95604119 ATATATATTTTT
1 ATA-AT-TTTTT
95604131 ATAATTTTT
1 ATAATTTTT
95604140 AATATTTTAA
Statistics
Matches: 77, Mismatches: 18, Indels: 19
0.68 0.16 0.17
Matches are distributed among these distances:
8 12 0.16
9 24 0.31
10 25 0.32
11 9 0.12
12 7 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:95604040 original size:9 final size:9
Alignment explanation
Indices: 95604026--95604211 Score: 55
Period size: 9 Copynumber: 20.1 Consensus size: 9
95604016 TTTTGGTATA
95604026 ATAATTTTT
1 ATAATTTTT
95604035 ATAATTTTT
1 ATAATTTTT
*
95604044 -TATATTTCT
1 ATA-ATTTTT
*
95604053 AT-GTATTTT
1 ATAAT-TTTT
95604062 ATAATTTTT
1 ATAATTTTT
95604071 -TACGATTTTT
1 ATA--ATTTTT
*
95604081 ATAAAATTTT
1 AT-AATTTTT
* *
95604091 ACATTTTTT
1 ATAATTTTT
*
95604100 AT-TTTTTT
1 ATAATTTTT
*
95604108 AAGAATTTTATAT
1 -ATAA-TTT-T-T
95604121 ATATATTTTT
1 ATA-ATTTTT
95604131 ATAATTTTT
1 ATAATTTTT
*
95604140 A-ATATTTTA
1 ATA-ATTTTT
*
95604149 ATATTTTATT
1 ATAATTT-TT
* *
95604159 A-AAATTTA
1 ATAATTTTT
*
95604167 ATAATATTT
1 ATAATTTTT
**
95604176 ATAGCTTTT
1 ATAATTTTT
*
95604185 ATTGA-TTTT
1 A-TAATTTTT
*
95604194 A-ATTTTTT
1 ATAATTTTT
95604202 ATAATTTTT
1 ATAATTTTT
95604211 A
1 A
95604212 ATAAAAGCAT
Statistics
Matches: 127, Mismatches: 29, Indels: 42
0.64 0.15 0.21
Matches are distributed among these distances:
8 19 0.15
9 72 0.57
10 22 0.17
11 5 0.04
12 7 0.06
13 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:95604080 original size:19 final size:19
Alignment explanation
Indices: 95604058--95604119 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
95604048 TTTCTATGTA
95604058 TTTTATAATTTTTTACGAT
1 TTTTATAATTTTTTACGAT
**
95604077 TTTTATAAAATTTTAC-AT
1 TTTTATAATTTTTTACGAT
* * *
95604095 TTTT-TATTTTTTTAAGAA
1 TTTTATAATTTTTTACGAT
95604113 TTTTATA
1 TTTTATA
95604120 TATATATTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 7 0.21
18 11 0.32
19 16 0.47
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTTACGAT
Found at i:95604165 original size:50 final size:49
Alignment explanation
Indices: 95604075--95604173 Score: 114
Period size: 50 Copynumber: 2.0 Consensus size: 49
95604065 ATTTTTTACG
* *
95604075 ATTTTTATAAAATTTTACATTTTTTATTTTTTTAAGAATTTTATATATAT
1 ATTTTTATAAAATTTTACATTTTTTATTTTATTAAGAATTTAATA-ATAT
*
95604125 ATTTTTAT-AATTTTTA-ATATTTTAATATTTTATTAA-AATTTAATAATAT
1 ATTTTTATAAAATTTTACAT-TTTT--TATTTTATTAAGAATTTAATAATAT
95604174 TTATAGCTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
48 2 0.05
49 15 0.35
50 16 0.37
51 10 0.23
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (49 bp):
ATTTTTATAAAATTTTACATTTTTTATTTTATTAAGAATTTAATAATAT
Found at i:95607391 original size:21 final size:20
Alignment explanation
Indices: 95607358--95607396 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
95607348 AACAAAATTG
*
95607358 AGCAATTGAAATGGTATAGA
1 AGCAATTGAAATGCTATAGA
*
95607378 AGCATATTGTAATGCTATA
1 AGCA-ATTGAAATGCTATA
95607397 CATCTCTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (20 bp):
AGCAATTGAAATGCTATAGA
Found at i:95612794 original size:35 final size:35
Alignment explanation
Indices: 95612747--95612822 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
95612737 CATACTTCTA
*
95612747 ATTTT-TCATTAGAACAATATTTTGATTTTTTAGT
1 ATTTTATCATTAGAACAATATTTTGATTTTTTAGG
* * *
95612781 ATTTTATCTTTAGAATAATCTTTTGATTTTTTAGG
1 ATTTTATCATTAGAACAATATTTTGATTTTTTAGG
95612816 ATTTTAT
1 ATTTTAT
95612823 TATTTTATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 5 0.14
35 32 0.86
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.58
Consensus pattern (35 bp):
ATTTTATCATTAGAACAATATTTTGATTTTTTAGG
Found at i:95615532 original size:21 final size:21
Alignment explanation
Indices: 95615506--95615549 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
95615496 AGCAAGCTAT
95615506 TCTTCGACAAGGGAGATTGTG
1 TCTTCGACAAGGGAGATTGTG
*
95615527 TCTTCGGCAAGGGAGATTGTG
1 TCTTCGACAAGGGAGATTGTG
95615548 TC
1 TC
95615550 AGACTCTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (21 bp):
TCTTCGACAAGGGAGATTGTG
Found at i:95635622 original size:48 final size:48
Alignment explanation
Indices: 95635566--95635749 Score: 224
Period size: 48 Copynumber: 3.8 Consensus size: 48
95635556 CATTAGGGTT
* * *
95635566 ATATGAGATCCCATGTAAGGCCATGGCTGGGACATGACATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * *
95635614 ATATGAGATCCTATGTAAGACCATGTTTGGGACATGGCATTGGCATCA
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * *
95635662 ATATGACATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* **** * *
95635710 ATATGTGATTTTGTGTAAGACCATGTCTAGGATATGGCAT
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCAT
95635750 CGATATGAGA
Statistics
Matches: 116, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:95635701 original size:42 final size:43
Alignment explanation
Indices: 95635654--95635836 Score: 122
Period size: 48 Copynumber: 4.1 Consensus size: 43
95635644 GACATGGCAT
*
95635654 TGGCATCA-ATATGACATCCCATGTAAGACCATATCTGGGATA
1 TGGCATCATATATGACATCTCATGTAAGACCATATCTGGGATA
** * ** * *
95635696 TGGCATTGGCATCGATATGTGATTTTGTGTAAGACCATGTCTAGGATA
1 TGGCA-T--CAT--ATATGACATCTCATGTAAGACCATATCTGGGATA
* * *
95635744 TGGCATCGATATGA-GACA--TCGTGTAAGACCATAGCTGGGCTA
1 TGGCATC-ATAT-ATGACATCTCATGTAAGACCATATCTGGGATA
* * **
95635786 TCGGTATCGATATGTGTGATCTCATGTAAGACCATATCTGGGATA
1 T-GGCATC-ATATATGACATCTCATGTAAGACCATATCTGGGATA
95635831 TGGCAT
1 TGGCAT
95635837 TGGCATCTTA
Statistics
Matches: 106, Mismatches: 23, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
42 25 0.24
43 13 0.12
44 8 0.08
45 26 0.25
46 2 0.02
47 1 0.01
48 31 0.29
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TGGCATCATATATGACATCTCATGTAAGACCATATCTGGGATA
Found at i:95635730 original size:96 final size:96
Alignment explanation
Indices: 95635566--95635749 Score: 251
Period size: 96 Copynumber: 1.9 Consensus size: 96
95635556 CATTAGGGTT
* * *
95635566 ATATGAGATCCCATGTAAGGCCATGGCTGGGACATGACATTGGCATCGATATGAGATCCTATGTA
1 ATATGACATCCCATGTAAGACCATAGCTGGGACATGACATTGGCATCGATATGAGATCCTATGTA
* *
95635631 AGACCATGTTTGGGACATGGCATTGGCATCA
66 AGACCATGTCTAGGACATGGCATTGGCATCA
* * * * ** *
95635662 ATATGACATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATTTTGTGTA
1 ATATGACATCCCATGTAAGACCATAGCTGGGACATGACATTGGCATCGATATGAGATCCTATGTA
*
95635727 AGACCATGTCTAGGATATGGCAT
66 AGACCATGTCTAGGACATGGCAT
95635750 CGATATGAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (96 bp):
ATATGACATCCCATGTAAGACCATAGCTGGGACATGACATTGGCATCGATATGAGATCCTATGTA
AGACCATGTCTAGGACATGGCATTGGCATCA
Found at i:95639221 original size:34 final size:34
Alignment explanation
Indices: 95639181--95639251 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
95639171 ACTTTTTACG
95639181 CTAGGCTCCCAATCTTTTACTCTTCATCTGAAAC
1 CTAGGCTCCCAATCTTTTACTCTTCATCTGAAAC
* *
95639215 CTAGGCTCCCAATCTTTTACTCTTTATTTGAAAC
1 CTAGGCTCCCAATCTTTTACTCTTCATCTGAAAC
95639249 CTA
1 CTA
95639252 CAATATAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.24, C:0.30, G:0.08, T:0.38
Consensus pattern (34 bp):
CTAGGCTCCCAATCTTTTACTCTTCATCTGAAAC
Found at i:95640182 original size:22 final size:22
Alignment explanation
Indices: 95640139--95640181 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
95640129 ATTAAAATTA
95640139 CAAAAAAATTTAAAATAATTTT
1 CAAAAAAATTTAAAATAATTTT
95640161 CAAAAAAA-TTAAAATAATTTT
1 CAAAAAAATTTAAAATAATTTT
95640182 TAGAGTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
CAAAAAAATTTAAAATAATTTT
Found at i:95653601 original size:2 final size:2
Alignment explanation
Indices: 95653594--95653644 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
95653584 ATATACTTAC
95653594 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95653636 AT AT A- AT AT
1 AT AT AT AT AT
95653645 CAAATTAAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:95655651 original size:26 final size:26
Alignment explanation
Indices: 95655615--95655666 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
95655605 ATAAAGTAAG
95655615 TCTAGTCTCTTAATTTTACAAGCTAA
1 TCTAGTCTCTTAATTTTACAAGCTAA
95655641 TCTAGTCTCTTAATTTTACAAGCTAA
1 TCTAGTCTCTTAATTTTACAAGCTAA
95655667 CTTTTTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (26 bp):
TCTAGTCTCTTAATTTTACAAGCTAA
Found at i:95659072 original size:17 final size:18
Alignment explanation
Indices: 95659041--95659074 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95659031 TTTGTCTTTT
*
95659041 AATACTTTTACATAAAAA
1 AATACTTTTAAATAAAAA
95659059 AATA-TTTTAAATAAAA
1 AATACTTTTAAATAAAA
95659075 CAACTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
AATACTTTTAAATAAAAA
Found at i:95662700 original size:3 final size:3
Alignment explanation
Indices: 95662692--95662716 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
95662682 TTTTTAAAGC
95662692 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
95662717 GATATTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:95664294 original size:24 final size:24
Alignment explanation
Indices: 95664266--95664315 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
95664256 TACTAAAATT
95664266 TTCAAAATTCTTTTCACCCAATAG
1 TTCAAAATTCTTTTCACCCAATAG
95664290 TTCAAAATTCTTTTCACCCAATAG
1 TTCAAAATTCTTTTCACCCAATAG
95664314 TT
1 TT
95664316 ACGTAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (24 bp):
TTCAAAATTCTTTTCACCCAATAG
Found at i:95664484 original size:21 final size:21
Alignment explanation
Indices: 95664454--95664500 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
95664444 ATTAGAAAAT
95664454 TAAA-AAATATTTACAAAT-TA
1 TAAATAAATATTTA-AAATATA
*
95664474 TAAATAAATATTTAATATATA
1 TAAATAAATATTTAAAATATA
95664495 TAAATA
1 TAAATA
95664501 CATAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATAAATATTTAAAATATA
Found at i:95666159 original size:14 final size:14
Alignment explanation
Indices: 95666140--95666175 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
95666130 TTGTTTAATT
95666140 GAAAATGATTTCCG
1 GAAAATGATTTCCG
* *
95666154 GAAAATAATTTCTG
1 GAAAATGATTTCCG
95666168 GAAAATGA
1 GAAAATGA
95666176 CTTACTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.28
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:95668148 original size:5 final size:5
Alignment explanation
Indices: 95668138--95668175 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
95668128 AATTTGTGTG
*
95668138 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
95668176 TTCATAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:95672598 original size:5 final size:5
Alignment explanation
Indices: 95672588--95672625 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
95672578 AATTTATGTG
*
95672588 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
95672626 TTTCACACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:95674586 original size:13 final size:13
Alignment explanation
Indices: 95674564--95674604 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
95674554 ATAATGATTC
*
95674564 TTTTTCTTTTGTT
1 TTTTTTTTTTGTT
95674577 TTTTTTTTTTGTT
1 TTTTTTTTTTGTT
95674590 TTTTTGTTTTT-TT
1 TTTTT-TTTTTGTT
95674603 TT
1 TT
95674605 AATAAAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.00, C:0.02, G:0.07, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTTGTT
Found at i:95675374 original size:13 final size:13
Alignment explanation
Indices: 95675358--95675385 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
95675348 AGTTTAGTAA
95675358 TGTTTTTTAAAAG
1 TGTTTTTTAAAAG
95675371 TGTTTTTTAAAAG
1 TGTTTTTTAAAAG
95675384 TG
1 TG
95675386 CTGTGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.54
Consensus pattern (13 bp):
TGTTTTTTAAAAG
Found at i:95677216 original size:20 final size:19
Alignment explanation
Indices: 95677193--95677237 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
95677183 ATGAACTAAA
95677193 ATGAAAATTTGTAAAATTTG
1 ATGAAAATTT-TAAAATTTG
* *
95677213 ATGAAAAATTTTGAAATTTT
1 ATG-AAAATTTTAAAATTTG
95677233 ATGAA
1 ATGAA
95677238 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 13 0.59
21 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
ATGAAAATTTTAAAATTTG
Found at i:95678722 original size:19 final size:18
Alignment explanation
Indices: 95678683--95678725 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
95678673 CTTTATTATG
*
95678683 TTTTTGTATTTTAGCATA
1 TTTTTGTATTGTAGCATA
95678701 TTTTATGTATTGTAGC-TGA
1 TTTT-TGTATTGTAGCAT-A
95678720 TTTTTG
1 TTTTTG
95678726 AATCATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.19, C:0.05, G:0.16, T:0.60
Consensus pattern (18 bp):
TTTTTGTATTGTAGCATA
Found at i:95686689 original size:31 final size:31
Alignment explanation
Indices: 95686654--95686715 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
95686644 CACCAGTAAT
95686654 AAGCCGAATCTTTCAATAGTGATACTGCACA
1 AAGCCGAATCTTTCAATAGTGATACTGCACA
95686685 AAGCCGAATCTTTCAATAGTGATACTGCACA
1 AAGCCGAATCTTTCAATAGTGATACTGCACA
95686716 CTTGACCGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (31 bp):
AAGCCGAATCTTTCAATAGTGATACTGCACA
Found at i:95688908 original size:50 final size:50
Alignment explanation
Indices: 95688849--95688952 Score: 138
Period size: 50 Copynumber: 2.1 Consensus size: 50
95688839 ATACGTGTAT
* * * * *
95688849 GCTCATACGAGCT-ATGAATCGGTATGCTCTCATAAGTTGTAAATCGGTAA
1 GCTCATACGAGCTGA-GAATCAGTAAGCTCTCACAAGCTGCAAATCGGTAA
*
95688899 GCTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
1 GCTCATACGAGCTGAGAATCAGTAAGCTCTCACAAGCTGCAAATCGGTAA
95688949 GCTC
1 GCTC
95688953 TCACAAGCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 46 0.98
51 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCAGTAAGCTCTCACAAGCTGCAAATCGGTAA
Found at i:95688918 original size:25 final size:25
Alignment explanation
Indices: 95688849--95688998 Score: 109
Period size: 25 Copynumber: 6.0 Consensus size: 25
95688839 ATACGTGTAT
*
95688849 GCTCATACGAGCT-ATGAATCGGTAT
1 GCTCATACGAGCTGA-GAATCGGTAA
*
95688874 GCTCTCATA--AGTTGTA-AATCGGTAA
1 G--CTCATACGAGCTG-AGAATCGGTAA
*
95688899 GCTCATACGAGCTGAGAATCAGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
95688924 GCTC-TCACGAGCTGCA-AATCGGTAA
1 GCTCAT-ACGAGCTG-AGAATCGGTAA
* * *
95688949 GCTC-TCACAAGCT-ACAAATTGGTAA
1 GCTCAT-ACGAGCTGA-GAATCGGTAA
*
95688974 GCTCATACGAACTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
95688999 CCCTAATAAC
Statistics
Matches: 101, Mismatches: 11, Indels: 26
0.73 0.08 0.19
Matches are distributed among these distances:
23 7 0.07
24 2 0.02
25 82 0.81
26 3 0.03
27 7 0.07
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:95696410 original size:47 final size:47
Alignment explanation
Indices: 95696345--95696541 Score: 281
Period size: 47 Copynumber: 4.2 Consensus size: 47
95696335 CATGGAAACA
* * * *
95696345 TGTGATATGTGATTTCTGTATAAGACCATAGCT-GGCCTATGGCATCGG
1 TGTGATATGTG-CTTCTGTATAAGACCATATCTAGG-ATATGGCATCAG
*
95696393 TGTGATATGTGCTTCTGTATAAGACCATATCTAGGATATGGCGTCAG
1 TGTGATATGTGCTTCTGTATAAGACCATATCTAGGATATGGCATCAG
* *
95696440 TGTGATATGTGCTTCTGTATAAGACCATATCTGGGATATGGAATC-G
1 TGTGATATGTGCTTCTGTATAAGACCATATCTAGGATATGGCATCAG
*
95696486 ATGTGATATGTGCTTCTGTGTAAGACCATATCTAGGATATGGCATCAG
1 -TGTGATATGTGCTTCTGTATAAGACCATATCTAGGATATGGCATCAG
95696534 TGTGATAT
1 TGTGATAT
95696542 ATGATCCGTG
Statistics
Matches: 135, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 120 0.89
48 14 0.10
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (47 bp):
TGTGATATGTGCTTCTGTATAAGACCATATCTAGGATATGGCATCAG
Found at i:95696480 original size:94 final size:95
Alignment explanation
Indices: 95696345--95696541 Score: 315
Period size: 94 Copynumber: 2.1 Consensus size: 95
95696335 CATGGAAACA
* * * *
95696345 TGTGATATGTGATTTCTGTATAAGACCATAGCTGGCCTATGGCATCGGTGTGATATGTGCTTCTG
1 TGTGATATGTGACTTCTGTATAAGACCATAGCTGGCATATGGAATCGATGTGATATGTGCTTCTG
*
95696410 TATAAGACCATATCTAGGATATGGCGTCAG
66 TATAAGACCATATCTAGGATATGGCATCAG
* *
95696440 TGTGATATGTG-CTTCTGTATAAGACCATATCTGGGATATGGAATCGATGTGATATGTGCTTCTG
1 TGTGATATGTGACTTCTGTATAAGACCATAGCTGGCATATGGAATCGATGTGATATGTGCTTCTG
*
95696504 TGTAAGACCATATCTAGGATATGGCATCAG
66 TATAAGACCATATCTAGGATATGGCATCAG
95696534 TGTGATAT
1 TGTGATAT
95696542 ATGATCCGTG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 83 0.88
95 11 0.12
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (95 bp):
TGTGATATGTGACTTCTGTATAAGACCATAGCTGGCATATGGAATCGATGTGATATGTGCTTCTG
TATAAGACCATATCTAGGATATGGCATCAG
Found at i:95701450 original size:47 final size:47
Alignment explanation
Indices: 95701377--95701586 Score: 244
Period size: 47 Copynumber: 4.4 Consensus size: 47
95701367 TGGTTGGACC
* **
95701377 ATGGCAACA-TGTGATATGTGATTTCTGTATAAGACCATAGCTGGCCT
1 ATGGCATCAGTGTGATATGTG-TTTCTGTATAAGACCATAGCTGGGAT
* * *
95701424 ATGGCATCGGTGTGATATGTGCTTCTGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGTTTCTGTATAAGACCATAGCTGGGAT
* * **
95701471 ATGGCATCAGTGTGATGTGTGTTTCTATATAAGACCATATTTGGGAT
1 ATGGCATCAGTGTGATATGTGTTTCTGTATAAGACCATAGCTGGGAT
* * * *
95701518 ATGGCATCAGTGTGATATGTGATTC-GTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGTGTGATATGTGTTTCTGTATAAGACCATAGCTGGGAT
*
95701564 ATGGCTTCAGTGTGTGATATGTG
1 ATGGCATCA--GTGTGATATGTG
95701587 ACTATGTGCA
Statistics
Matches: 140, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
46 23 0.16
47 94 0.67
48 23 0.16
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGTTTCTGTATAAGACCATAGCTGGGAT
Found at i:95713312 original size:93 final size:93
Alignment explanation
Indices: 95713200--95713371 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95713190 GCCCATAAGT
* *
95713200 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95713265 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
95713293 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95713358 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
95713372 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95713367 original size:46 final size:46
Alignment explanation
Indices: 95713192--95713367 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
95713182 TGTAACCCGC
* * *
95713192 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
95713238 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
95713288 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
95713331 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95713368 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:95721643 original size:10 final size:10
Alignment explanation
Indices: 95721628--95721667 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
95721618 AGGTATTTTA
95721628 TATTTAAAAT
1 TATTTAAAAT
95721638 TATTTAAAA-
1 TATTTAAAAT
*
95721647 AATTATAAAAT
1 TATT-TAAAAT
95721658 TATTTAAAAT
1 TATTTAAAAT
95721668 AATAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 3 0.12
10 20 0.77
11 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
TATTTAAAAT
Found at i:95721762 original size:20 final size:19
Alignment explanation
Indices: 95721699--95721800 Score: 63
Period size: 18 Copynumber: 5.5 Consensus size: 19
95721689 ATAAAATTAA
95721699 TAAAAA-ATAAAAAAATTT
1 TAAAAATATAAAAAAATTT
* *
95721717 GCAAAATTTATGAAAAAAA-TT
1 -TAAAA-ATAT-AAAAAAATTT
95721738 T-AAAATATAAAAAAATTAT
1 TAAAAATATAAAAAAATT-T
* * *
95721757 TAAAAATAT--AGAAAGTG
1 TAAAAATATAAAAAAATTT
* *
95721774 CAAAAATAT-AGAAAATTT
1 TAAAAATATAAAAAAATTT
95721792 TAAAAATAT
1 TAAAAATAT
95721801 TATTACAAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 15
0.69 0.14 0.16
Matches are distributed among these distances:
17 15 0.24
18 21 0.33
19 9 0.14
20 7 0.11
21 4 0.06
22 7 0.11
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (19 bp):
TAAAAATATAAAAAAATTT
Found at i:95721796 original size:17 final size:17
Alignment explanation
Indices: 95721731--95721796 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 17
95721721 AATTTATGAA
* *
95721731 AAAAATTTAAAATATAAA
1 AAAATTTTAAAATAT-AG
95721749 AAAATTATTAAAAATATAG
1 AAAATT-TT-AAAATATAG
* ***
95721768 AAAGTGCAAAAATATAG
1 AAAATTTTAAAATATAG
95721785 AAAATTTTAAAA
1 AAAATTTTAAAA
95721797 ATATTATTAC
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
17 17 0.47
18 5 0.14
19 7 0.19
20 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (17 bp):
AAAATTTTAAAATATAG
Found at i:95721831 original size:21 final size:21
Alignment explanation
Indices: 95721774--95721833 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
95721764 ATAGAAAGTG
*
95721774 CAAAAAT-ATAGAAAATT-TT
1 CAAAAATAATATAAAATTATT
*
95721793 -AAAAATATTATTACAAATTATT
1 CAAAAATAATA-TA-AAATTATT
95721815 CAAAAATAATATAAAATTA
1 CAAAAATAATATAAAATTA
95721834 AAAATAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 6 0.18
19 2 0.06
20 1 0.03
21 11 0.33
22 4 0.12
23 9 0.27
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
CAAAAATAATATAAAATTATT
Found at i:95722183 original size:20 final size:21
Alignment explanation
Indices: 95722158--95722201 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
95722148 TCTAATAACA
95722158 TTTTAT-AATATTTTTAA-AAT
1 TTTTATCAAT-TTTTTAATAAT
95722178 TTTTATCAATTTTTTAATAAT
1 TTTTATCAATTTTTTAATAAT
95722199 TTT
1 TTT
95722202 CAATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTATCAATTTTTTAATAAT
Found at i:95722292 original size:16 final size:16
Alignment explanation
Indices: 95722273--95722307 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
95722263 TCATATATAA
95722273 TTTATATAAATTTT-AT
1 TTTA-ATAAATTTTCAT
95722289 TTTAATAAATTTTCAT
1 TTTAATAAATTTTCAT
95722305 TTT
1 TTT
95722308 TAATTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTAATAAATTTTCAT
Found at i:95722352 original size:17 final size:17
Alignment explanation
Indices: 95722288--95722353 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
95722278 ATAAATTTTA
*
95722288 TTTTAATAAATTTTCAT
1 TTTTAATAATTTTTCAT
* *
95722305 TTTTAATTATTTTTAGAAT
1 TTTTAATAATTTTT--CAT
* * *
95722324 ATATAA-ATTTTTTCAT
1 TTTTAATAATTTTTCAT
95722340 TTTTAATAATTTTT
1 TTTTAATAATTTTT
95722354 ATAAATTTCT
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
16 6 0.17
17 18 0.51
18 5 0.14
19 6 0.17
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (17 bp):
TTTTAATAATTTTTCAT
Found at i:95722414 original size:9 final size:9
Alignment explanation
Indices: 95722329--95722416 Score: 55
Period size: 9 Copynumber: 10.1 Consensus size: 9
95722319 AGAATATATA
95722329 AATTTTT-T
1 AATTTTTAT
*
95722337 CATTTTTAAT
1 AATTTTT-AT
95722347 AATTTTTAT
1 AATTTTTAT
*
95722356 AAATTTCTAT
1 -AATTTTTAT
95722366 -ATTTTTAT
1 AATTTTTAT
95722374 --TTTTT-T
1 AATTTTTAT
*
95722380 GAA-CTTTA-
1 -AATTTTTAT
95722388 AATTTTTTAT
1 AA-TTTTTAT
95722398 AATTTTTAT
1 AATTTTTAT
*
95722407 GATTTTTAT
1 AATTTTTAT
95722416 A
1 A
95722417 GTTTAATGTT
Statistics
Matches: 62, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
6 1 0.02
7 7 0.11
8 16 0.26
9 21 0.34
10 17 0.27
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:95722853 original size:29 final size:29
Alignment explanation
Indices: 95722820--95722885 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
95722810 ATTTTAGAAA
95722820 ATTTTTAAAATTTTAACTTTTTAATATAT
1 ATTTTTAAAATTTTAACTTTTTAATATAT
* * *
95722849 A-TTTTAGAATTTTTAATTTTTTTATATAT
1 ATTTTTA-AAATTTTAACTTTTTAATATAT
95722878 -TTTTTAAA
1 ATTTTTAAA
95722886 TATAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 7 0.22
29 25 0.78
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
ATTTTTAAAATTTTAACTTTTTAATATAT
Found at i:95722908 original size:23 final size:25
Alignment explanation
Indices: 95722867--95722912 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
95722857 ATTTTTAATT
*
95722867 TTTTTATATATTTTTTAAATATAAA
1 TTTTTATATATTTTATAAATATAAA
95722892 TTTTTAT-T-TTTTATAAATATA
1 TTTTTATATATTTTATAAATATA
95722913 TTGAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 1 0.05
25 7 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTTATATATTTTATAAATATAAA
Found at i:95723113 original size:18 final size:19
Alignment explanation
Indices: 95723076--95723113 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
95723066 AAAACGAGTT
*
95723076 ATTTGAGTAGACTCAAATA
1 ATTTGAATAGACTCAAATA
*
95723095 ATTTGAATA-ACTTAAATA
1 ATTTGAATAGACTCAAATA
95723113 A
1 A
95723114 CTCGATTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (19 bp):
ATTTGAATAGACTCAAATA
Found at i:95724539 original size:13 final size:13
Alignment explanation
Indices: 95724521--95724545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95724511 ATTAGCTTGA
95724521 ATGAAACATGTTC
1 ATGAAACATGTTC
95724534 ATGAAACATGTT
1 ATGAAACATGTT
95724546 TCTGGTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGAAACATGTTC
Found at i:95736949 original size:38 final size:38
Alignment explanation
Indices: 95736890--95737065 Score: 190
Period size: 38 Copynumber: 4.6 Consensus size: 38
95736880 GATACAATTA
* * * * *
95736890 CACCAGCACAAAGCTTACTAGGCACATAGCCCAAATAT
1 CACCGGCACAAAGCCTGCTAGGCACAAAGCCCGAATAT
* *
95736928 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGAATAT
1 CACCGGCACAAAGCCTGCTAGGCACAAAGCCCGAATAT
* ** *
95736966 CAACGATACAAAGCCTGCTAGGCACAAAGCCCGAATAC
1 CACCGGCACAAAGCCTGCTAGGCACAAAGCCCGAATAT
** ** * *
95737004 CATTGGCACAAAATCTACTAGGCACAAAGCCTGAATAT
1 CACCGGCACAAAGCCTGCTAGGCACAAAGCCCGAATAT
*
95737042 CACCAGCACAAAGCCTGCTAGGCA
1 CACCGGCACAAAGCCTGCTAGGCA
95737066 TAATGTAACA
Statistics
Matches: 110, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 110 1.00
ACGTcount: A:0.38, C:0.30, G:0.18, T:0.15
Consensus pattern (38 bp):
CACCGGCACAAAGCCTGCTAGGCACAAAGCCCGAATAT
Found at i:95737012 original size:76 final size:76
Alignment explanation
Indices: 95736890--95737065 Score: 219
Period size: 76 Copynumber: 2.3 Consensus size: 76
95736880 GATACAATTA
* * * * * * *
95736890 CACCAGCACAAAGCTTACTAGGCACATAGCCCAAATATCACCGGCACAAAGCCTGCTAGGCATAA
1 CACCAGCACAAAGCCTGCTAGGCACAAAGCCCAAATACCACCGGCACAAAACCTACTAGGCACAA
95736955 AGCCTGAATAT
66 AGCCTGAATAT
* * * ** *
95736966 CAAC-GATACAAAGCCTGCTAGGCACAAAGCCCGAATACCATTGGCACAAAATCTACTAGGCACA
1 CACCAG-CACAAAGCCTGCTAGGCACAAAGCCCAAATACCACCGGCACAAAACCTACTAGGCACA
95737030 AAGCCTGAATAT
65 AAGCCTGAATAT
95737042 CACCAGCACAAAGCCTGCTAGGCA
1 CACCAGCACAAAGCCTGCTAGGCA
95737066 TAATGTAACA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
75 1 0.01
76 81 0.98
77 1 0.01
ACGTcount: A:0.38, C:0.30, G:0.18, T:0.15
Consensus pattern (76 bp):
CACCAGCACAAAGCCTGCTAGGCACAAAGCCCAAATACCACCGGCACAAAACCTACTAGGCACAA
AGCCTGAATAT
Found at i:95738172 original size:17 final size:16
Alignment explanation
Indices: 95738132--95738173 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
95738122 TGAATGTTGT
95738132 ATTGTATG-TAATGTG
1 ATTGTATGTTAATGTG
95738147 ATT-TATGTTAATGTG
1 ATTGTATGTTAATGTG
*
95738162 CCTTGTATGTTA
1 -ATTGTATGTTA
95738174 TGATAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 10 0.43
16 2 0.09
17 7 0.30
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (16 bp):
ATTGTATGTTAATGTG
Found at i:95746872 original size:19 final size:19
Alignment explanation
Indices: 95746848--95746888 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
95746838 TCATATTGGA
95746848 AGAATGAATTTACCCGAAG
1 AGAATGAATTTACCCGAAG
95746867 AGAATGAATTTACCCGAAG
1 AGAATGAATTTACCCGAAG
95746886 AGA
1 AGA
95746889 TTAAGGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.20
Consensus pattern (19 bp):
AGAATGAATTTACCCGAAG
Found at i:95750236 original size:49 final size:50
Alignment explanation
Indices: 95750038--95750304 Score: 154
Period size: 49 Copynumber: 5.6 Consensus size: 50
95750028 TATGTGTTCT
* * **
95750038 AGTGTAAGACATGTCTGGGACAT-GCATCG-G-C-C-ATATTATGGGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAGCCTCGATA-GATGAAAGCC
* * * * *
95750084 AGTGTAAGACATGTCTGGGAGAT-GCATCGA-CCTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAGCCTCGATAGATGA-AAGCC
* * * * * * * *
95750132 AGTGTAAAACCTGTCTGAGACATGGCGT-TAG-CTTG-TTG-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAGCCTCGATAGATGAAAGCC
* * *
95750176 AGTGTAAGACCTGCCTGAGACATGGCATCGA-CAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAGC-CTCGATAGATGAAAGCC
* * * * *
95750225 AGTGCAAGACCTGTCTGGGATATGACATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAGCCTCGATAGATGAAAGCC
*
95750274 AGTGTAAGACCTGTCTGGGACATGGAATCGA
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA
95750305 TTTTGATGTG
Statistics
Matches: 165, Mismatches: 38, Indels: 32
0.70 0.16 0.14
Matches are distributed among these distances:
44 26 0.16
45 2 0.01
46 32 0.19
47 3 0.02
48 32 0.19
49 69 0.42
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGAGCCTCGATAGATGAAAGCC
Done.