Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 31 of 425
Found at i:7853264 original size:46 final size:44
Alignment explanation
Indices: 7853205--7853319 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
7853195 ACAGGACAGA
* *
7853205 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
7853251 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7853295 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7853320 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7853300 original size:44 final size:45
Alignment explanation
Indices: 7853205--7853338 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
7853195 ACAGGACAGA
* *
7853205 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
7853251 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
7853295 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7853339 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7853530 original size:16 final size:18
Alignment explanation
Indices: 7853499--7853531 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
7853489 AAGGGAATAC
7853499 AGAAGAAGATAGAAATTG
1 AGAAGAAGATAGAAATTG
7853517 AGAAGAA-A-AGAAATT
1 AGAAGAAGATAGAAATT
7853532 TATGATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (18 bp):
AGAAGAAGATAGAAATTG
Found at i:7859355 original size:6 final size:6
Alignment explanation
Indices: 7859344--7859390 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
7859334 TAAAATTACT
7859344 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
7859391 AAATATAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:7862749 original size:18 final size:18
Alignment explanation
Indices: 7862717--7862751 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7862707 TCTCTTAATA
*
7862717 ATTTAATTAAGAAATTAC
1 ATTTAATTAACAAATTAC
*
7862735 ATTTAATTATCAAATTA
1 ATTTAATTAACAAATTA
7862752 AATAACACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTTAATTAACAAATTAC
Found at i:7867444 original size:22 final size:22
Alignment explanation
Indices: 7867397--7867444 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7867387 AAATGGTAAC
*
7867397 AAAATAATGAGAAAACAACAAG
1 AAAATAATGAGAAAACAACAAA
*
7867419 AAAATAAT-AGTAAAACAATAAA
1 AAAATAATGAG-AAAACAACAAA
7867441 AAAA
1 AAAA
7867445 GAGCAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAATAATGAGAAAACAACAAA
Found at i:7868587 original size:11 final size:10
Alignment explanation
Indices: 7868569--7868643 Score: 73
Period size: 10 Copynumber: 7.4 Consensus size: 10
7868559 AAATTAAGAC
7868569 TAATTTTTAA
1 TAATTTTTAA
7868579 TATATTTTTAA
1 TA-ATTTTTAA
7868590 TAATTTCTT-A
1 TAATTT-TTAA
* *
7868600 TTAGTTTTAA
1 TAATTTTTAA
7868610 TAATTTTTAAA
1 TAATTTTT-AA
**
7868621 TAATTTTCCA
1 TAATTTTTAA
7868631 TAATTTTT-A
1 TAATTTTTAA
7868640 TAAT
1 TAAT
7868644 GATTTGAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
9 7 0.13
10 26 0.48
11 21 0.39
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:7868593 original size:21 final size:21
Alignment explanation
Indices: 7868569--7868639 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
7868559 AAATTAAGAC
7868569 TAATTTTTAATATATTTTTAA
1 TAATTTTTAATATATTTTTAA
*
7868590 TAATTTCTT-AT-TAGTTTTAA
1 TAATTT-TTAATATATTTTTAA
**
7868610 TAATTTTTAA-ATAATTTTCCA
1 TAATTTTTAATAT-ATTTTTAA
7868631 TAATTTTTA
1 TAATTTTTA
7868640 TAATGATTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 2 0.05
20 16 0.38
21 22 0.52
22 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (21 bp):
TAATTTTTAATATATTTTTAA
Found at i:7868639 original size:31 final size:30
Alignment explanation
Indices: 7868569--7868643 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
7868559 AAATTAAGAC
*
7868569 TAATTTTTAATATATTTTTAATAATTTCTTA
1 TAATTTTTAATA-ATTTTTAATAATTTCTCA
* *
7868600 TTAGTTTTAATAATTTTTAAATAATTT-TCCA
1 TAATTTTTAATAATTTTT-AATAATTTCT-CA
7868631 TAATTTTT-ATAAT
1 TAATTTTTAATAAT
7868644 GATTTGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
30 12 0.32
31 25 0.68
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (30 bp):
TAATTTTTAATAATTTTTAATAATTTCTCA
Found at i:7870696 original size:56 final size:56
Alignment explanation
Indices: 7870666--7870835 Score: 223
Period size: 56 Copynumber: 3.0 Consensus size: 56
7870656 ACATACATAC
* * * * * *
7870666 ATTCAGTCATATCATATATTGCCATAGGTTTTAACCTTATGATATTACATACATTT
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
* *
7870722 ATTCAGTCATTTCATATCTTGCCATGGGTCTTAACCTCATGGTCTTACATACATTC
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
* * * * *
7870778 ATTTAGCCATTTCATATCTTGCCATAGGTCTTAACCTCATGGTCTTACAAATATTC
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
7870834 AT
1 AT
7870836 GTATTGCCTT
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 101 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.41
Consensus pattern (56 bp):
ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
Found at i:7870826 original size:112 final size:112
Alignment explanation
Indices: 7870617--7870818 Score: 289
Period size: 112 Copynumber: 1.8 Consensus size: 112
7870607 TTCATACATA
* * *
7870617 CATTTCATATAATGCCATGGGTTTTGACCATATGGTCTTACATACATACATTCAGTCATATCATA
1 CATTTCATATAATGCCATGGGTCTTAACCATATGGTCTTACATACATACATTCAGCCATATCATA
* *
7870682 TATTGCCATAGGTTTTAACCTTATGATATTACATACATTTATTCAGT
66 TATTGCCATAGGTCTTAACCTCATGATATTACATACATTTATTCAGT
** * * *
7870729 CATTTCATATCTTGCCATGGGTCTTAACC-TCATGGTCTTACATACATTCATTTAGCCATTTCAT
1 CATTTCATATAATGCCATGGGTCTTAACCAT-ATGGTCTTACATACATACATTCAGCCATATCAT
*
7870793 ATCTTGCCATAGGTCTTAACCTCATG
65 ATATTGCCATAGGTCTTAACCTCATG
7870819 GTCTTACAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
111 1 0.01
112 77 0.99
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (112 bp):
CATTTCATATAATGCCATGGGTCTTAACCATATGGTCTTACATACATACATTCAGCCATATCATA
TATTGCCATAGGTCTTAACCTCATGATATTACATACATTTATTCAGT
Found at i:7871526 original size:18 final size:18
Alignment explanation
Indices: 7871485--7871526 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
7871475 AGGAGTTGAA
*
7871485 AGTTAGTGGGTTAGTGGG
1 AGTTAGTGGGTTAGTGAG
*
7871503 ATTTAGT-GGTTAGTGAG
1 AGTTAGTGGGTTAGTGAG
7871520 AGGTTAG
1 A-GTTAG
7871527 GATAGATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (18 bp):
AGTTAGTGGGTTAGTGAG
Found at i:7899122 original size:18 final size:19
Alignment explanation
Indices: 7899081--7899131 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
7899071 ATAAATCAAA
7899081 ATAAATTTCAAAATAATTT
1 ATAAATTTCAAAATAATTT
*
7899100 CTAAAATTT-AAAAT-ATTT
1 AT-AAATTTCAAAATAATTT
7899118 ATAAATTTCAAAAT
1 ATAAATTTCAAAAT
7899132 TATATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 6 0.21
18 10 0.36
19 6 0.21
20 6 0.21
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (19 bp):
ATAAATTTCAAAATAATTT
Found at i:7899169 original size:22 final size:21
Alignment explanation
Indices: 7899141--7899181 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7899131 TTATATTTTT
7899141 AAAAAAAATTAAAGAATTTTAA
1 AAAAAAAATTAAA-AATTTTAA
*
7899163 AAAAAAATTTAAAAATTTT
1 AAAAAAAATTAAAAATTTT
7899182 TCTGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (21 bp):
AAAAAAAATTAAAAATTTTAA
Found at i:7899182 original size:22 final size:21
Alignment explanation
Indices: 7899135--7899182 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7899125 TCAAAATTAT
7899135 ATTTTTAAAAAAAATTAAAGA
1 ATTTTTAAAAAAAATTAAAGA
*
7899156 ATTTTAAAAAAAAATTTAAA-A
1 ATTTTTAAAAAAAA-TTAAAGA
7899177 ATTTTT
1 ATTTTT
7899183 CTGAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
ATTTTTAAAAAAAATTAAAGA
Found at i:7899238 original size:19 final size:18
Alignment explanation
Indices: 7899214--7899259 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 18
7899204 TAATTAATGA
7899214 TTCAAATTTATCATACGGT
1 TTCAAATTTAT-ATACGGT
7899233 TTCAAA--TATATACGGT
1 TTCAAATTTATATACGGT
*
7899249 TTTAAATTTAT
1 TTCAAATTTAT
7899260 GTGTACTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
18 3 0.12
19 6 0.25
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.46
Consensus pattern (18 bp):
TTCAAATTTATATACGGT
Found at i:7899848 original size:21 final size:21
Alignment explanation
Indices: 7899824--7899873 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
7899814 TGTTCTGTAC
*
7899824 TCTTTCTTTTTCTTTTCCTTT
1 TCTTTCTTTTTATTTTCCTTT
*
7899845 TCTTTCTTTTTATTTTTCTTT
1 TCTTTCTTTTTATTTTCCTTT
7899866 TCTTTCTT
1 TCTTTCTT
7899874 CCTTTTACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (21 bp):
TCTTTCTTTTTATTTTCCTTT
Found at i:7907325 original size:16 final size:15
Alignment explanation
Indices: 7907305--7907372 Score: 82
Period size: 16 Copynumber: 4.3 Consensus size: 15
7907295 GGGAGGAATG
7907305 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
*
7907320 GTAATAGAGTTGTAAT
1 G-AATAGAGCTGTAAT
*
7907336 GGAATAGAGTTGTAAT
1 -GAATAGAGCTGTAAT
*
7907352 AGAATAGACCTGTAAT
1 -GAATAGAGCTGTAAT
7907368 GAATA
1 GAATA
7907373 ATTCAGTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.13
16 40 0.85
17 1 0.02
ACGTcount: A:0.41, C:0.04, G:0.25, T:0.29
Consensus pattern (15 bp):
GAATAGAGCTGTAAT
Found at i:7907342 original size:32 final size:32
Alignment explanation
Indices: 7907301--7907372 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
7907291 GGTTGGGAGG
**
7907301 AATGGAATAGAGCTGTAAT-GTAATAGAGTTGT
1 AATGGAATAGAGCTGTAATAG-AATAGACCTGT
*
7907333 AATGGAATAGAGTTGTAATAGAATAGACCTGT
1 AATGGAATAGAGCTGTAATAGAATAGACCTGT
7907365 AAT-GAATA
1 AATGGAATA
7907373 ATTCAGTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.14
32 30 0.83
33 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.29
Consensus pattern (32 bp):
AATGGAATAGAGCTGTAATAGAATAGACCTGT
Found at i:7907588 original size:26 final size:26
Alignment explanation
Indices: 7907533--7907588 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
7907523 TTTTAAATTT
* * * *
7907533 TAATAAAATTATTATTAAATATAATT
1 TAATAAAAATAATAATAAATATAATA
7907559 TAATAAAAATAATAATAAATAATAA-A
1 TAATAAAAATAATAATAAAT-ATAATA
7907585 TAAT
1 TAAT
7907589 TTAATCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TAATAAAAATAATAATAAATATAATA
Found at i:7925502 original size:26 final size:27
Alignment explanation
Indices: 7925472--7925522 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7925462 AAAGTAAACA
*
7925472 ATAAAACAA-TTTAAAATGAATAATAC
1 ATAAAACAAGTTTAAAATAAATAATAC
7925498 ATAAAACAAGTTTAAAATAAATAAT
1 ATAAAACAAGTTTAAAATAAATAAT
7925523 GTATAAAGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (27 bp):
ATAAAACAAGTTTAAAATAAATAATAC
Found at i:7925602 original size:26 final size:27
Alignment explanation
Indices: 7925573--7925628 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
7925563 AAAGAATGAC
* *
7925573 ATATATGAA-TAATTTTAAAATAAATA
1 ATATATAAATTAATTTAAAAATAAATA
*
7925599 ATATATAAATTAATTTAAAAATAATTA
1 ATATATAAATTAATTTAAAAATAAATA
7925626 ATA
1 ATA
7925629 AGAAGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (27 bp):
ATATATAAATTAATTTAAAAATAAATA
Found at i:7925760 original size:17 final size:17
Alignment explanation
Indices: 7925738--7925777 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7925728 TGAAATATAT
*
7925738 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
* *
7925755 AATATAAAATAATTTGA
1 AATATAAAATAACTTAA
7925772 AATATA
1 AATATA
7925778 TATATAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:7930410 original size:16 final size:16
Alignment explanation
Indices: 7930386--7930427 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7930376 AGAATTAGTT
7930386 ATATTAAAATTATTTA
1 ATATTAAAATTATTTA
* *
7930402 ATTTTAAAAATATTTA
1 ATATTAAAATTATTTA
7930418 ATATTAAAAT
1 ATATTAAAAT
7930428 AATAAAAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:7937620 original size:31 final size:31
Alignment explanation
Indices: 7937585--7937649 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
7937575 AATAGGGTCA
*
7937585 TATGCGCACTTGATTAAAGATTATTACAGAT
1 TATGCACACTTGATTAAAGATTATTACAGAT
*
7937616 TATGCACGCTTGATTAAAGATTATTACAGAT
1 TATGCACACTTGATTAAAGATTATTACAGAT
7937647 TAT
1 TAT
7937650 ATCAAGATCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (31 bp):
TATGCACACTTGATTAAAGATTATTACAGAT
Found at i:7937727 original size:38 final size:37
Alignment explanation
Indices: 7937682--7937776 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 37
7937672 TGGATTCTCG
*
7937682 GGTAATATAACGAGATCTAGCCTTATTGTAGATTTTC
1 GGTAATATAACGAGATCTAGACTTATTGTAGATTTTC
** * * *
7937719 GAGTAATATAGTGAGATCTAGACTTGTTGCAGATTCTTA
1 G-GTAATATAACGAGATCTAGACTTATTGTAGATT-TTC
*
7937758 GGTACTATAACGAGATCTA
1 GGTAATATAACGAGATCTA
7937777 CCACTTGTCG
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 1 0.02
38 43 0.91
39 3 0.06
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (37 bp):
GGTAATATAACGAGATCTAGACTTATTGTAGATTTTC
Found at i:7940180 original size:39 final size:37
Alignment explanation
Indices: 7940083--7940180 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
7940073 TATGGTATTT
* * * *
7940083 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
7940119 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
7940158 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
7940181 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:7940702 original size:16 final size:15
Alignment explanation
Indices: 7940683--7940718 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
7940673 TTTCTTCTTT
7940683 TTTTTTTGGGGTTAGG
1 TTTTTTTGGGG-TAGG
7940699 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
7940714 TTTTT
1 TTTTT
7940719 CTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.06, C:0.00, G:0.33, T:0.61
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:7940733 original size:16 final size:15
Alignment explanation
Indices: 7940714--7940749 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
7940704 TTGGGGTAGG
*
7940714 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
7940730 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
7940745 TTTTT
1 TTTTT
7940750 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:7941599 original size:30 final size:30
Alignment explanation
Indices: 7941563--7941624 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
7941553 TTTTGAAAAA
7941563 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
7941593 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
7941623 CA
1 CA
7941625 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:7941743 original size:14 final size:14
Alignment explanation
Indices: 7941720--7941754 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7941710 TGAGTTGATT
7941720 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
7941733 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
7941747 TTTGAAAA
1 TTTGAAAA
7941755 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:7942055 original size:72 final size:73
Alignment explanation
Indices: 7941772--7942303 Score: 395
Period size: 72 Copynumber: 6.8 Consensus size: 73
7941762 ACATGTAACC
* * * *
7941772 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
7941837 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
7941850 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
7941915 TCAGCGTATGAGC-
63 TCAGCG--TG-TCT
* * *
7941928 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
7941993 ACGTGTCT
66 GCGTGTCT
* ** * * *
7942001 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
7942065 GCGTGTCC
66 GCGTGTCT
*
7942073 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-------TTTTTTGAAA-ACAGAAATTG---
** ** *
7942138 AATGGAAATTGAAAATACCTCGACGTGTGAT
55 -A---AAA-T--ACCT-CAGC---GTGT-CT
* * * *
7942169 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAATAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
7942234 CAGCGTGTC-
64 CAGCGTGTCT
* *
7942243 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
7942304 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 67
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 31 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 10 0.03
81 9 0.02
82 1 0.00
83 2 0.01
85 1 0.00
86 1 0.00
88 2 0.01
89 1 0.00
90 8 0.02
91 11 0.03
92 2 0.01
95 4 0.01
96 1 0.00
97 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:7942256 original size:171 final size:168
Alignment explanation
Indices: 7941969--7942446 Score: 709
Period size: 165 Copynumber: 2.9 Consensus size: 168
7941959 TGATTTTTTG
* * * ** * *
7941969 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
7942032 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
7942096 ATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA--TTTTTTTTTTTGAAAGGCAAAAATTGA
*
7942136 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
7942201 TGACTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
7942266 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
7942301 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
7942366 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
7942431 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
7942447 GAAAAAGTAG
Statistics
Matches: 282, Mismatches: 21, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
165 156 0.55
167 27 0.10
168 1 0.00
169 30 0.11
171 68 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:7942265 original size:74 final size:75
Alignment explanation
Indices: 7942142--7942286 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 75
7942132 TTGAAAAATG
*
7942142 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
7942207 TTTTGACAATA
65 TTTTGACAATA
* * *
7942218 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
7942281 TTTTGA
65 TTTTGA
7942287 AAGGCAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
75 1 0.02
76 21 0.33
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAATA
Found at i:7942432 original size:74 final size:75
Alignment explanation
Indices: 7942307--7942446 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
7942297 TTGAAAAACG
* *
7942307 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
7942372 TTTTGACAACA
65 TTTTGACAACA
* * *
7942383 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
7942447 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:7942645 original size:72 final size:71
Alignment explanation
Indices: 7942511--7942676 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
7942501 TGAACAACGT
* * * *
7942511 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
7942576 GAGTTG
66 GAGTTG
*
7942582 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
7942647 TGAGTTG
65 TGAGTTG
**
7942654 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
7942677 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:7942819 original size:71 final size:71
Alignment explanation
Indices: 7942676--7942939 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
7942666 AAAAATTAAA
* * * * *
7942676 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
7942739 GCCCCG
66 GCCCCG
* *
7942745 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
7942810 GTCTTG
66 GCCCCG
* * *
7942816 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
7942879 TGCCCCG
65 TGCCCCG
*
7942886 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
7942940 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:7942897 original size:70 final size:69
Alignment explanation
Indices: 7942676--7942939 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
7942666 AAAAATTAAA
* ** * * *
7942676 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
7942741 CCCG
66 CCCG
* * *
7942745 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
7942810 GTCTTG
64 GCCCCG
* *
7942816 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
7942881 CCCCG
65 CCCCG
*
7942886 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
7942940 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:7942922 original size:263 final size:257
Alignment explanation
Indices: 7942514--7943106 Score: 1042
Period size: 257 Copynumber: 2.3 Consensus size: 257
7942504 ACAACGTAAA
* * * * * *
7942514 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
7942579 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
7942644 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
7942709 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
7942774 TGATT
253 TGATT
7942779 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
7942844 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
7942909 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
7942974 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
7943036 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
7943101 TTGATT
66 TTGATT
7943107 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:7952470 original size:16 final size:16
Alignment explanation
Indices: 7952451--7952536 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
7952441 TTCTTCTTTT
7952451 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
*
7952467 TTTTTTTTGGGGTAGG
1 TTTTTTTTGGGTTAGG
*
7952483 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
** * *
7952495 TTTTTTTT-TCTTTGT
1 TTTTTTTTGGGTTAGG
7952510 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
7952526 TTTTTTTTGGG
1 TTTTTTTTGGG
7952537 GGCTTAATGG
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
13 2 0.04
14 1 0.02
15 8 0.14
16 34 0.61
17 3 0.05
ACGTcount: A:0.03, C:0.03, G:0.23, T:0.70
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:7952499 original size:43 final size:42
Alignment explanation
Indices: 7952444--7952530 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 42
7952434 TTCTTTTTTC
*
7952444 TTCTTTTTTTTTTTTGGGTTAGGTTTTTTTTGGGGTAGGTTT
1 TTCTTTTTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGGTTT
** * * *
7952486 TTCTTTTTCTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGGTTT
1 TTCTTTTT-TTTTTTTGGCTTAGGTTTTTTTTGGGGTAGGTTT
7952529 TT
1 TT
7952531 TTTGGGGGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
42 8 0.21
43 30 0.79
ACGTcount: A:0.03, C:0.05, G:0.20, T:0.72
Consensus pattern (42 bp):
TTCTTTTTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGGTTT
Found at i:7953932 original size:18 final size:18
Alignment explanation
Indices: 7953909--7953948 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7953899 TATAATTTTA
*
7953909 AAAAATA-TATAATACATC
1 AAAAATATTA-AAAACATC
7953927 AAAAATATTAAAAACATC
1 AAAAATATTAAAAACATC
7953945 AAAA
1 AAAA
7953949 TAAGTATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATATTAAAAACATC
Found at i:7954065 original size:30 final size:30
Alignment explanation
Indices: 7954029--7954093 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
7954019 TAACTTAGCA
*
7954029 AACAAATGTCTCTAAAATAATAACAAAATT
1 AACAAATATCTCTAAAATAATAACAAAATT
*
7954059 AACAAATATCTTTAAAATAATAACAAAATT
1 AACAAATATCTCTAAAATAATAACAAAATT
7954089 AACAA
1 AACAA
7954094 TAAAAGAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.60, C:0.12, G:0.02, T:0.26
Consensus pattern (30 bp):
AACAAATATCTCTAAAATAATAACAAAATT
Found at i:7960173 original size:2 final size:2
Alignment explanation
Indices: 7960166--7960193 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7960156 CAAACACTCC
7960166 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7960194 TCATTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7960288 original size:23 final size:23
Alignment explanation
Indices: 7960261--7960304 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7960251 AATTTTAAGG
7960261 TTTATATATTTAATAAAAGAAAA
1 TTTATATATTTAATAAAAGAAAA
* *
7960284 TTTATATATTTTATAAGAGAA
1 TTTATATATTTAATAAAAGAA
7960305 TGTCATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (23 bp):
TTTATATATTTAATAAAAGAAAA
Found at i:7960540 original size:61 final size:61
Alignment explanation
Indices: 7960465--7960580 Score: 214
Period size: 61 Copynumber: 1.9 Consensus size: 61
7960455 AGTAGTTACC
*
7960465 AAAATGAGAAAATGTGTATACCTTAAAGGTCAAATCGTGAATTAAGCTAAATTTAGATACT
1 AAAATGAGAAAATGTGTATACCTTAAAGGTCAAATCATGAATTAAGCTAAATTTAGATACT
*
7960526 AAAATGAGAAAATGTGTATACTTTAAAGGTCAAATCATGAATTAAGCTAAATTTA
1 AAAATGAGAAAATGTGTATACCTTAAAGGTCAAATCATGAATTAAGCTAAATTTA
7960581 ATTAATAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.30
Consensus pattern (61 bp):
AAAATGAGAAAATGTGTATACCTTAAAGGTCAAATCATGAATTAAGCTAAATTTAGATACT
Found at i:7961368 original size:21 final size:22
Alignment explanation
Indices: 7961325--7961372 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7961315 AAACATTTAA
*
7961325 TTATTTTATGGAATTAATGATTT
1 TTATTTTAT-GAATTAATAATTT
*
7961348 TTATTTTAT-AATTTATAATTT
1 TTATTTTATGAATTAATAATTT
7961369 TTAT
1 TTAT
7961373 ACTTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.61
23 9 0.39
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (22 bp):
TTATTTTATGAATTAATAATTT
Found at i:7961394 original size:5 final size:6
Alignment explanation
Indices: 7961344--7961396 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
7961334 GGAATTAATG
* *
7961344 ATTTTT ATTTTAT AATTTATA ATTTTT ATACTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTT-T -ATTT-TT ATTTTT AT-TTTT ATTTTT ATTTTT ATTTTT
7961396 A
1 A
7961397 AAATTGATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 24 0.62
7 10 0.26
8 4 0.10
9 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (6 bp):
ATTTTT
Found at i:7963257 original size:12 final size:12
Alignment explanation
Indices: 7963242--7963288 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
7963232 ATATATTTAA
7963242 AAATATTAAAAT
1 AAATATTAAAAT
7963254 AAATATTAAAAT
1 AAATATTAAAAT
7963266 AAATA--AAAAT
1 AAATATTAAAAT
*
7963276 -AATACTAAAAT
1 AAATATTAAAAT
7963287 AA
1 AA
7963289 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
9 4 0.12
10 5 0.16
11 5 0.16
12 18 0.56
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:7963257 original size:24 final size:24
Alignment explanation
Indices: 7963196--7963259 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 24
7963186 TTTCTTATTT
* *
7963196 TATT-AAATAAAAAAATTTAAAAA
1 TATTAAAATAAATATATTTAAAAA
*
7963219 TATAATAAATCAAATATATTTAAAAA
1 TATTA-AAAT-AAATATATTTAAAAA
7963245 TATTAAAATAAATAT
1 TATTAAAATAAATAT
7963260 TAAAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 3 0.09
24 6 0.18
25 8 0.24
26 17 0.50
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
TATTAAAATAAATATATTTAAAAA
Found at i:7963279 original size:21 final size:20
Alignment explanation
Indices: 7963199--7963288 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 20
7963189 CTTATTTTAT
7963199 TAAATAAAAAAAT-TTAAAAA
1 TAAATAAAAAAATATT-AAAA
7963219 TATAATAAATCAAATATATTTAAAA
1 TA-AATAAA--AAA-ATA-TTAAAA
*
7963244 -ATATTAAAATAAATATTAAAA
1 TA-AATAAAA-AAATATTAAAA
*
7963265 TAAATAAAAATAATACTAAAA
1 TAAATAAAAA-AATATTAAAA
7963286 TAA
1 TAA
7963289 TTCTTAAAAC
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
20 3 0.05
21 30 0.52
22 5 0.09
23 5 0.09
24 9 0.16
25 4 0.07
26 2 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAATAAAAAAATATTAAAA
Found at i:7963365 original size:15 final size:16
Alignment explanation
Indices: 7963335--7963375 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7963325 AAATAGTTAT
7963335 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
7963352 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
7963367 A--AAAAATTA
1 ATTAAAAATTA
7963376 TATATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 2 0.09
15 8 0.35
17 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:7963762 original size:11 final size:11
Alignment explanation
Indices: 7963746--7963806 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
7963736 AACACCATTT
7963746 TATTATTAAAA
1 TATTATTAAAA
*
7963757 TATTATCAAAA
1 TATTATTAAAA
* **
7963768 TATCTAATTTATT
1 TAT-T-ATTAAAA
*
7963781 TATTATTAATA
1 TATTATTAAAA
7963792 TATTATTTAAAA
1 TATTA-TTAAAA
7963804 TAT
1 TAT
7963807 CACCAACATC
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
11 23 0.59
12 10 0.26
13 6 0.15
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATTATTAAAA
Found at i:7964156 original size:3 final size:3
Alignment explanation
Indices: 7964148--7964191 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7964138 TATAATACTA
7964148 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7964192 GACCTTCTCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7965880 original size:37 final size:35
Alignment explanation
Indices: 7965647--7965973 Score: 135
Period size: 38 Copynumber: 8.9 Consensus size: 35
7965637 TAAACCTGTA
* * *
7965647 TAAGGCAA-CTATAAAAAGGTTGGTATAGTTC-TTGT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAG-ACATT-T
* ** *
7965682 CTAAGGCAACTTTTAAGAATA-GTTGGGATAGATCCGTC
1 -TAAGGCAACCTTTAA-AA-AGGTTGGGATAGA-CATTT
* * *
7965720 TATGGCAACCTTT-AAAAGGTTGGGATAGGCCTTGT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATT-T
* * ** * * *
7965755 CTAAAGCAACCCTTAAAAAAAAATTGGTATAAACCTTAT
1 -TAAGGCAA-CCTT-TAAAAAGGTTGGGATAGACATT-T
* * *
7965794 CTAAAGCAACTTTTTAAAAAAGTTGGGATAGATC-TTGT
1 -TAAGGCAAC-CTTTAAAAAGGTTGGGATAGA-CATT-T
*
7965832 CTAAGGCAACCTTTAGGAAAGGTTGGGATAGACATATT
1 -TAAGGCAACCTTTA-AAAAGGTTGGGATAGACAT-TT
* * *
7965870 TAAGGCAACCTTTTAAAAATGTTAGAATAGACATTGT
1 TAAGGCAACC-TTTAAAAAGGTTGGGATAGACATT-T
* * *
7965907 CTAAGGCAACCTTAAAAAAAGGTTGGGATATACTTGTT
1 -TAAGGCAACCTT-TAAAAAGGTTGGGATAGACAT-TT
* * *
7965945 TAAAGCAA-CGTTAAAAAGGTTGCGATAGA
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA
7965974 TTCTTCTAAG
Statistics
Matches: 225, Mismatches: 45, Indels: 43
0.72 0.14 0.14
Matches are distributed among these distances:
34 4 0.02
35 27 0.12
36 18 0.08
37 59 0.26
38 85 0.38
39 32 0.14
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (35 bp):
TAAGGCAACCTTTAAAAAGGTTGGGATAGACATTT
Found at i:7965947 original size:75 final size:75
Alignment explanation
Indices: 7965750--7965953 Score: 221
Period size: 75 Copynumber: 2.7 Consensus size: 75
7965740 TGGGATAGGC
* ** * * *
7965750 CTTGTCTAAAGCAACCCTTAAAAAAAAATTGGTATAAACCTTATCTAAAGCAACTTTTTAAAAAA
1 CTTGTCTAAGGCAA-CCTTAAAAAAAGGTTGGGATAAA-CTTATTTAAAGCAACCTTTTAAAAAA
* *
7965815 GTTGGGATAGAT
64 GTTAGAATAGAT
* ** * * * *
7965827 CTTGTCTAAGGCAACCTTTAGGAAAGGTTGGGATAGACATATTTAAGGCAACCTTTTAAAAATGT
1 CTTGTCTAAGGCAACCTTAAAAAAAGGTTGGGATAAACTTATTTAAAGCAACCTTTTAAAAAAGT
7965892 TAGAATAGA-
66 TAGAATAGAT
* *
7965901 CATTGTCTAAGGCAACCTTAAAAAAAGGTTGGGATATACTTGTTTAAAGCAAC
1 C-TTGTCTAAGGCAACCTTAAAAAAAGGTTGGGATAAACTTATTTAAAGCAAC
7965954 GTTAAAAAGG
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
74 1 0.01
75 74 0.71
76 16 0.15
77 13 0.12
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (75 bp):
CTTGTCTAAGGCAACCTTAAAAAAAGGTTGGGATAAACTTATTTAAAGCAACCTTTTAAAAAAGT
TAGAATAGAT
Found at i:7965949 original size:150 final size:148
Alignment explanation
Indices: 7965658--7965991 Score: 347
Period size: 150 Copynumber: 2.2 Consensus size: 148
7965648 AAGGCAACTA
* * * * *
7965658 TAAAAAGGTTGGTATAGTTCTTGTCTAAGGCAACTTTTAAGAATAGTTGGGATAGATCCGTCTAT
1 TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATAGTTGGGATAGATCCATCTAA
* * * * *
7965723 GGCAACCTTTAAAAGGTTGGGATAGGCCTTGTCTAAAGCAACCCTTAAAAAAAAATTGGTATAAA
66 GGCAACCTTTAAAAGGTTAGAATAGACATTGTCTAAAGCAACCCTTAAAAAAAAATTGGGATAAA
*
7965788 CCTTATCTAAAGCAACTTTT
131 CCTTATCTAAAGCAAC--GT
* * * *
7965808 TAAAAAAGTTGGGATAGATCTTGTCTAAGGCAACCTTTAGGAA-AGGTTGGGATAGA-CATATTT
1 TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATA-GTTGGGATAGATC-CATCT
* * **
7965871 AAGGCAACCTTTTAAAAATGTTAGAATAGACATTGTCTAAGGCAA-CCTTAAAAAAAGGTTGGGA
64 AAGGCAACC-TTT-AAAAGGTTAGAATAGACATTGTCTAAAGCAACCCTTAAAAAAAAATTGGGA
* * *
7965935 TATA-CTTGTTTAAAGCAACGT
127 TAAACCTTATCTAAAGCAACGT
* *
7965956 TAAAAAGGTTGCGATAGAT-TCT-TCTAAGGTAACCTT
1 TAAAAAGGTTGGGATAGATCT-TGTCTAAGGCAACCTT
7965992 AAAAACGTTG
Statistics
Matches: 154, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
147 14 0.09
148 19 0.12
149 2 0.01
150 72 0.47
151 22 0.14
152 25 0.16
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (148 bp):
TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATAGTTGGGATAGATCCATCTAA
GGCAACCTTTAAAAGGTTAGAATAGACATTGTCTAAAGCAACCCTTAAAAAAAAATTGGGATAAA
CCTTATCTAAAGCAACGT
Found at i:7965994 original size:35 final size:36
Alignment explanation
Indices: 7965807--7966001 Score: 114
Period size: 38 Copynumber: 5.3 Consensus size: 36
7965797 AAGCAACTTT
* * *
7965807 TTAAAAAAGTTGGGATAGATCTT-GTCTAAGGCAACC
1 TTAAAAAGGTTGCGATAGA-CTTCTTCTAAGGCAACC
* * * *
7965843 TTTAGGAAAGGTTGGGATAGACATATT-TAAGGCAACC
1 -TTA-AAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
* * *
7965880 TTTTAAAAATGTTAG-AATAGACATT-GTCTAAGGCAACC
1 --TTAAAAAGGTT-GCGATAGAC-TTCTTCTAAGGCAACC
* * * * *
7965918 TTAAAAAAAGGTTGGGATATACTTGTT-TAAAGCAACG
1 TT--AAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
*
7965955 TTAAAAAGGTTGCGATAGA-TTCTTCTAAGGTAACC
1 TTAAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
*
7965990 TTAAAAACGTTG
1 TTAAAAAGGTTG
7966002 GTATTTATCT
Statistics
Matches: 125, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
34 4 0.03
35 33 0.26
36 2 0.02
37 41 0.33
38 45 0.36
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (36 bp):
TTAAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
Found at i:7966535 original size:2 final size:2
Alignment explanation
Indices: 7966528--7966567 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7966518 CTATAACGTG
7966528 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7966568 ATACATAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7970354 original size:17 final size:17
Alignment explanation
Indices: 7970332--7970365 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7970322 TGCATATTTG
7970332 AAAAAAAAACAGCCCAA
1 AAAAAAAAACAGCCCAA
7970349 AAAAAAAAACAGCCCAA
1 AAAAAAAAACAGCCCAA
7970366 GGAAATATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.24, G:0.06, T:0.00
Consensus pattern (17 bp):
AAAAAAAAACAGCCCAA
Found at i:7978385 original size:29 final size:29
Alignment explanation
Indices: 7978353--7978416 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
7978343 ACCATAAAAT
* *
7978353 CCTAAAC-CTTAAAACCATACACCCTAAAG
1 CCTAAACTCTT-AAACCATAAACCCTAAAC
7978382 CCTAAACTCTTAAACCATAAACCCTAAAC
1 CCTAAACTCTTAAACCATAAACCCTAAAC
7978411 CCTAAA
1 CCTAAA
7978417 TATAGAAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 29 0.91
30 3 0.09
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (29 bp):
CCTAAACTCTTAAACCATAAACCCTAAAC
Found at i:7978411 original size:14 final size:14
Alignment explanation
Indices: 7978364--7978416 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
7978354 CTAAACCTTA
*
7978364 AAACCATACACCCT
1 AAACCATAAACCCT
*
7978378 AAAGCC-TAAACTCTT
1 AAA-CCATAAAC-CCT
7978393 AAACCATAAACCCT
1 AAACCATAAACCCT
*
7978407 AAACCCTAAA
1 AAACCATAAA
7978417 TATAGAAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.17
Consensus pattern (14 bp):
AAACCATAAACCCT
Found at i:7978580 original size:7 final size:7
Alignment explanation
Indices: 7978570--7978613 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
7978560 GGCCAACTCT
*
7978570 TAAACCT
1 TAAACCC
*
7978577 TAAATCC
1 TAAACCC
7978584 TAAACCC
1 TAAACCC
7978591 TAAACCC
1 TAAACCC
7978598 TAAACACCC
1 T-AA-ACCC
7978607 TAAACCC
1 TAAACCC
7978614 ATTAGGCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 23 0.72
8 4 0.12
9 5 0.16
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:7978956 original size:130 final size:135
Alignment explanation
Indices: 7978735--7979313 Score: 366
Period size: 132 Copynumber: 4.3 Consensus size: 135
7978725 GACAAAGTTG
* * * * * * **
7978735 ACTCTTATTTAAGCGTTGCATTAAGCATACATATCACAACCCTTATATAAAAAGTTAACCT-AAG
1 ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTT-GGCTAAAG
* * * * *
7978799 CGTATGTCGGCAAGTCTATCCCAACACTT-AG-G-A-AAATATA-TATCGTCTTAGGACTGGAC-
65 CATAAGTCGGCAAGTCTACCCCAACACTTAAGTGCACAAA-AAAGTATCGTCTTAGGACTAGACA
7978858 AAAGCCA
129 AAAGCCA
* * *
7978865 ACTCTTATTTAAGCGTTTTCTTTGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCTAAAGC
1 ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCTAAAGC
* * *
7978930 ATAAGTTGGCCAGTCTACCCCAACACTTCAAAAAGTGTCACCAAAAAAGTGTCGTCTTAGGACTA
66 ATAAGTCGGCAAGTCTACCCCAACACTT----AAGTG-CA-CAAAAAAGTATCGTCTTAGGACTA
*
7978995 TACAAAAGCCA
125 GACAAAAGCCA
* * * ** *
7979006 ACTTTTATTCAAGCGTTGCCTTAGTTATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
1 ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCTAAAGC
* * * *
7979071 ---A-T-----AGTCTATCCCAACACTTAGTAAAATGTCGC-CACAAAAGTGTCGTCTCAGGACT
66 ATAAGTCGGCAAGTCTACCCCAACAC-T--T--AA-GT-GCACAAAAAAGTATCGTCTTAGGACT
*
7979126 ATACAAAAGCCA
124 AGACAAAAGCCA
* * * * * * *
7979138 ACTTTTATTCAAGCATTGCCTTAGGAATACATATACCAACCCTTATACAAAGAGTTGGCCAAAGC
1 ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCTAAAGC
* * *
7979203 ---A-T-----AGTCTATCCCAACACTTAGGAAATGTTGC-CACAAAAGTGTCGTCTTAGGACTA
66 ATAAGTCGGCAAGTCTACCCCAACACTT----AA-G-TGCACAAAAAAGTATCGTCTTAGGACTA
*
7979258 GACAAAAACCA
125 GACAAAAGCCA
* * * *
7979269 ACTCTTATTCAAGCGTTGCTTTAGGTATACATATCCCAACCCTTA
1 ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTA
7979314 GGAAAGTGTT
Statistics
Matches: 383, Mismatches: 45, Indels: 41
0.82 0.10 0.09
Matches are distributed among these distances:
129 3 0.01
130 74 0.19
131 80 0.21
132 126 0.33
133 5 0.01
134 3 0.01
135 4 0.01
136 1 0.00
137 1 0.00
138 2 0.01
139 2 0.01
140 19 0.05
141 63 0.16
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (135 bp):
ACTCTTATTTAAGCGTTTCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCTAAAGC
ATAAGTCGGCAAGTCTACCCCAACACTTAAGTGCACAAAAAAGTATCGTCTTAGGACTAGACAAA
AGCCA
Found at i:7979124 original size:132 final size:131
Alignment explanation
Indices: 7978941--7979313 Score: 586
Period size: 132 Copynumber: 2.8 Consensus size: 131
7978931 TAAGTTGGCC
* * *
7978941 AGTCTACCCCAACACTTCA-AAAAGTGTCACCAAAAAAGTGTCGTCTTAGGACTATACAAAAGCC
1 AGTCTATCCCAACACTT-AGAAAA-TGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCC
*
7979005 AACTTTTATTCAAGCGTTGCCTTAGTTATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
64 AACTTTTATTCAAGCGTTGCCTTAGGTATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
7979070 CAT
129 CAT
*
7979073 AGTCTATCCCAACACTTAGTAAAATGTCGCCACAAAAGTGTCGTCTCAGGACTATACAAAAGCCA
1 AGTCTATCCCAACACTTAG-AAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCA
* * *
7979138 ACTTTTATTCAAGCATTGCCTTAGGAATACATATACCAACCCTTATACAAAGAGTTGGCCAAAGC
65 ACTTTTATTCAAGCGTTGCCTTAGGTATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
7979203 AT
130 AT
* * * *
7979205 AGTCTATCCCAACACTTAGGAAATGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAACCAA
1 AGTCTATCCCAACACTTAGAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
* *
7979270 CTCTTATTCAAGCGTTGCTTTAGGTATACATATCCCAACCCTTA
66 CTTTTATTCAAGCGTTGCCTTAGGTATACATATCCCAACCCTTA
7979314 GGAAAGTGTT
Statistics
Matches: 221, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
131 81 0.37
132 136 0.62
133 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (131 bp):
AGTCTATCCCAACACTTAGAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
CTTTTATTCAAGCGTTGCCTTAGGTATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCA
T
Found at i:7979316 original size:91 final size:91
Alignment explanation
Indices: 7979209--7979404 Score: 304
Period size: 91 Copynumber: 2.2 Consensus size: 91
7979199 AAGCATAGTC
* *
7979209 TATCCCAACACTTAGGAAA-TGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAACCAACTC
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGAC-AAAACCAACTC
* *
7979273 TTATTCAAGCGTTGCTTTAGGTATACA
65 TTATTCAAGCGTTACTTTAGGCATACA
* *
7979300 TATCCCAACCCTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCT
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGACAAAACCAACTCT
*
7979365 TATTTAAGCGTTACTTTAGGCATACA
66 TATTCAAGCGTTACTTTAGGCATACA
*
7979391 TATACCAACCCTTA
1 TATCCCAACCCTTA
7979405 TACAAAGAGT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
91 65 0.68
92 31 0.32
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (91 bp):
TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGACAAAACCAACTCT
TATTCAAGCGTTACTTTAGGCATACA
Found at i:7979539 original size:120 final size:120
Alignment explanation
Indices: 7979322--7979543 Score: 322
Period size: 120 Copynumber: 1.9 Consensus size: 120
7979312 TAGGAAAGTG
**
7979322 TTGCCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTACTTTAGGCA
1 TTGCCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATAAAAGCGTTACTTTAGGCA
*
7979387 TACATATACCAACCCTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACAC
66 TACATATACCAACACTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACAC
* ** *
7979442 TTGCCCCAAAAGTGTCGTCTTAGGACTAGACTTTTA-CCAACTCTTATAAAAGCGTTGCTTTAGG
1 TTGCCCCAAAAGTGTCGTCATAGGACTAGAC--AAAGCCAACTCTTATAAAAGCGTTACTTTAGG
* * *
7979506 CTTGCATATCCCAACACTTATA-AAAGAGTTGGCTAAAG
64 CATACATATACCAACACTTATACAAAGAGTTGGCTAAAG
7979544 CGTATTTTGG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
120 46 0.51
121 43 0.48
122 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (120 bp):
TTGCCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATAAAAGCGTTACTTTAGGCA
TACATATACCAACACTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACAC
Found at i:7981476 original size:21 final size:21
Alignment explanation
Indices: 7981452--7981491 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7981442 AAGATATACT
*
7981452 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
7981473 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
7981492 ATACATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:7985141 original size:26 final size:26
Alignment explanation
Indices: 7985104--7985212 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7985094 TGATACAAAT
7985104 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
7985130 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
7985155 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7985181 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
7985207 TTATAA
1 TGATAA
7985213 GAATTTCATT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 24 0.31
26 53 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7985159 original size:51 final size:52
Alignment explanation
Indices: 7985104--7985212 Score: 202
Period size: 51 Copynumber: 2.1 Consensus size: 52
7985094 TGATACAAAT
7985104 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
7985155 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
*
7985207 TTATAA
1 TGATAA
7985213 GAATTTCATT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 47 0.84
52 9 0.16
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:7986717 original size:25 final size:26
Alignment explanation
Indices: 7986689--7986740 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7986679 TTTACAGTTT
7986689 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
7986714 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
7986740 T
1 T
7986741 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:7990930 original size:25 final size:25
Alignment explanation
Indices: 7990891--7990997 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 25
7990881 TGATACAAAT
7990891 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
7990917 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
7990941 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
7990966 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
7990992 TGATAA
1 TGATAA
7990998 GAATTTCATG
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
24 9 0.12
25 52 0.67
26 17 0.22
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:7992497 original size:25 final size:26
Alignment explanation
Indices: 7992469--7992520 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7992459 TTTACAGTTT
7992469 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
7992494 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
7992520 T
1 T
7992521 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:7996379 original size:24 final size:25
Alignment explanation
Indices: 7996323--7996428 Score: 171
Period size: 24 Copynumber: 4.2 Consensus size: 25
7996313 TGATACAAAT
7996323 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
7996349 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
7996373 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
7996397 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
7996423 TGATAA
1 TGATAA
7996429 GAATTTCATG
Statistics
Matches: 78, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 33 0.42
25 28 0.36
26 17 0.22
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:7996386 original size:49 final size:51
Alignment explanation
Indices: 7996323--7996428 Score: 182
Period size: 49 Copynumber: 2.1 Consensus size: 51
7996313 TGATACAAAT
7996323 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATGGGTTAGGTAAATGTTTCA
7996373 TGATAAT-GGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
7996423 TGATAA
1 TGATAA
7996429 GAATTTCATG
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
48 9 0.17
49 28 0.52
50 17 0.31
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:8001794 original size:50 final size:52
Alignment explanation
Indices: 8001740--8001847 Score: 193
Period size: 50 Copynumber: 2.1 Consensus size: 52
8001730 TGATACAAAT
8001740 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
*
8001790 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
8001842 TGATAA
1 TGATAA
8001848 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
50 32 0.58
51 13 0.24
52 10 0.18
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:8001824 original size:26 final size:26
Alignment explanation
Indices: 8001740--8001847 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
8001730 TGATACAAAT
*
8001740 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8001766 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
8001790 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8001816 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8001842 TGATAA
1 TGATAA
8001848 GAATTTCATG
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
24 9 0.11
25 30 0.38
26 40 0.51
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8003363 original size:24 final size:25
Alignment explanation
Indices: 8003327--8003374 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
8003317 ACAGTTTTAC
8003327 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
8003351 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
8003375 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:8006207 original size:30 final size:30
Alignment explanation
Indices: 8006163--8006219 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8006153 ACCAAGGAAG
*
8006163 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAAAACTAGTAGAAAAACCTTGAGCC
* *
8006193 CCTTGAAAAGTAGTAGGAAAACCTTGA
1 CCTTGAAAACTAGTAGAAAAACCTTGA
8006220 AAACCTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (30 bp):
CCTTGAAAACTAGTAGAAAAACCTTGAGCC
Found at i:8006227 original size:30 final size:30
Alignment explanation
Indices: 8006163--8006227 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
8006153 ACCAAGGAAG
* ***
8006163 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAAAACTAGTAGAAAAACCTTGAAAA
* *
8006193 CCTTGAAAAGTAGTAGGAAAACCTTGAAAA
1 CCTTGAAAACTAGTAGAAAAACCTTGAAAA
8006223 CCTTG
1 CCTTG
8006228 TGGAGAAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (30 bp):
CCTTGAAAACTAGTAGAAAAACCTTGAAAA
Found at i:8008940 original size:26 final size:26
Alignment explanation
Indices: 8008888--8009022 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
8008878 TGATACAAAT
* *
8008888 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8008913 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
8008939 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8008965 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8008991 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8009017 TGATAA
1 TGATAA
8009023 GAATTCATGT
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 12 0.12
26 91 0.88
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:8018648 original size:27 final size:27
Alignment explanation
Indices: 8018581--8018649 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
8018571 GTGGAGGCAA
** *
8018581 GCCAGAGGCGGCACTGGTGAAGCCTCT
1 GCCAGAGGCGGCACCAGTGAAGCCTAT
* * *
8018608 GGCAGAAGCAGCACCAGTGAAGCCTAT
1 GCCAGAGGCGGCACCAGTGAAGCCTAT
*
8018635 GCCATAGGCGGCACC
1 GCCAGAGGCGGCACC
8018650 CACACCCCAA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.30, G:0.33, T:0.12
Consensus pattern (27 bp):
GCCAGAGGCGGCACCAGTGAAGCCTAT
Found at i:8021297 original size:24 final size:25
Alignment explanation
Indices: 8021257--8021307 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
8021247 ATTCTTTTCA
*
8021257 TTTTATTTTTTGAATTTT-GAATTT
1 TTTTATTTTTTAAATTTTAGAATTT
*
8021281 TTTTA-TTTTTAACATTTTATAATTT
1 TTTTATTTTTTAA-ATTTTAGAATTT
8021306 TT
1 TT
8021308 AAATATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 10 0.43
25 7 0.30
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTTATTTTTTAAATTTTAGAATTT
Found at i:8023491 original size:3 final size:3
Alignment explanation
Indices: 8023468--8023927 Score: 96
Period size: 3 Copynumber: 155.3 Consensus size: 3
8023458 TTGGACATTT
* * *
8023468 TTA TTG TTA TT- TTA ATA TTA TTA TTA TT- TTA TTTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * *
8023512 TTG TTA CTA TTA TTTA TTA TTA TTA CTA TTA TTA TTA CATA TCA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * ** * * *
8023559 TTC TTC TTA TTA TT- TTC TATA TTA TTA CCA GTA TTAA CGTA TTA CTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT-A -TTA TTA TTA
* * * * * *
8023606 CTA TCA TTA CTA TTA -TA CTTA TTA TTG TTC TTA GTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * * * * *
8023650 TTCA TTA CTG TCA CCA TTA TCA CTA TTA TT- TTC CT- TTA TCA TTA
1 TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
8023694 TTA TTT TCTA TTA CTA TTA ATA -TA TTA TTA TTA CTA TT- TTT TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * *
8023738 TT- TTT TTA TTA TCA TTA TTA ACA -TA TCA TTT TTA TT- TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * *
8023783 ACA -TA TTA TTA TGT- TTA TTA ATA TT- CTA TTA TTA TTT TCTA CT-
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
** * * * * * ** *
8023826 TTA TTA CCGAA TTA TTA CTA TTA TTA CTG TCA -TA TTA -CA AAA CTAA
1 TTA TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
8023872 TCA AT- TTA T-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8023918 TTA TTA TTA T
1 TTA TTA TTA T
8023928 ATTTTTCTTT
Statistics
Matches: 322, Mismatches: 101, Indels: 68
0.66 0.21 0.14
Matches are distributed among these distances:
2 31 0.10
3 267 0.83
4 22 0.07
5 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:8023547 original size:25 final size:25
Alignment explanation
Indices: 8023483--8023586 Score: 81
Period size: 25 Copynumber: 4.2 Consensus size: 25
8023473 GTTATTTTAA
*
8023483 TATTATTATTATT-TTATTTATTAT
1 TATTACTATTATTATTATTTATTAT
** * *
8023507 TATTGTTGTTACTATTATTTATTAT
1 TATTACTATTATTATTATTTATTAT
** *
8023532 TATTACTATTATTATTACATATCAT
1 TATTACTATTATTATTATTTATTAT
*
8023557 TATT-CTTCTTATTATT-TTCTA-TAT
1 TATTAC-TATTATTATTATT-TATTAT
8023581 TATTAC
1 TATTAC
8023587 CAGTATTAAC
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
24 17 0.27
25 45 0.73
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTACTATTATTATTATTTATTAT
Found at i:8023712 original size:19 final size:19
Alignment explanation
Indices: 8023673--8023731 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
8023663 CCATTATCAC
8023673 TATTATTTTCCT-TTA-TCAT
1 TATTATTTT-CTATTACT-AT
8023692 TATTATTTTCTATTACTAT
1 TATTATTTTCTATTACTAT
*
8023711 TAATATATTAT-TATTACTAT
1 T-AT-TATTTTCTATTACTAT
8023731 T
1 T
8023732 TTTTTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
18 2 0.06
19 15 0.43
20 13 0.37
21 5 0.14
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTTTCTATTACTAT
Found at i:8023769 original size:25 final size:25
Alignment explanation
Indices: 8023740--8023788 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8023730 TTTTTTTATT
*
8023740 TTTTTATTATCATTATTAACATATCA
1 TTTTTATT-TCATCATTAACATATCA
*
8023766 TTTTTATTTTATCATTAACATAT
1 TTTTTATTTCATCATTAACATAT
8023789 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATTTCATCATTAACATATCA
Found at i:8027516 original size:28 final size:28
Alignment explanation
Indices: 8027474--8027628 Score: 93
Period size: 28 Copynumber: 5.6 Consensus size: 28
8027464 TAATTATATG
** **
8027474 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCAAGGA
* *
8027502 TGGCACTTAGTGTGCGATA-CATCCAA-AA
1 TGGCACTTAGTGTGCGA-AGTAT-CAAGGA
* * *
8027530 CGGCACTTAGTATGCGAAGTAACAAGGA
1 TGGCACTTAGTGTGCGAAGTATCAAGGA
*** * *
8027558 TGGCACTTAGTGTGCGAAACGTCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCAAGGA
* * * *
8027586 CGGAACTTAGTGTGC-AAG-ATCGAGTA
1 TGGCACTTAGTGTGCGAAGTATCAAGGA
*
8027612 TGGCACCTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
8027629 TACATTGAAT
Statistics
Matches: 94, Mismatches: 28, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
26 17 0.18
27 7 0.07
28 68 0.72
29 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCAAGGA
Found at i:8027561 original size:56 final size:54
Alignment explanation
Indices: 8027499--8027633 Score: 171
Period size: 56 Copynumber: 2.5 Consensus size: 54
8027489 GAAGTATCGG
*
8027499 GGATGGCACTTAGTGTGCGATACATCCAAAACGGCACTTAGTATGCGAAGTAACAA
1 GGATGGCACTTAGTGTGCGATACATCCAAAACGGAACTTAGTATGC-AAG-AACAA
* * * * * *
8027555 GGATGGCACTTAGTGTGCGAAACGTCCAGAACGGAACTTAGTGTGCAAGATCGA
1 GGATGGCACTTAGTGTGCGATACATCCAAAACGGAACTTAGTATGCAAGAACAA
* *
8027609 GTATGGCACCTAGTGTGCGATACAT
1 GGATGGCACTTAGTGTGCGATACAT
8027634 TGAATATTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 24 0.35
55 3 0.04
56 41 0.60
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (54 bp):
GGATGGCACTTAGTGTGCGATACATCCAAAACGGAACTTAGTATGCAAGAACAA
Found at i:8027712 original size:32 final size:32
Alignment explanation
Indices: 8027676--8027772 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
8027666 TGAGTATGAG
* * *
8027676 ATTGGTACGAGATGATACAGGTATCTATGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
8027708 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
8027740 ATTGGTACAATAT-AGTACATGTATGTACGAAA
1 ATTGGTACAAGATGA-TACAGGTATCTACGAAA
8027772 A
1 A
8027773 ATCAATTGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGAAA
Found at i:8033809 original size:28 final size:29
Alignment explanation
Indices: 8033778--8033931 Score: 124
Period size: 28 Copynumber: 5.5 Consensus size: 29
8033768 TATTGGGGAT
*
8033778 GGCACTTAGTGTGC-AATACATCCAGAAC
1 GGCACTTAGTGTGCGAATACATCAAGAAC
** ** * *
8033806 GGCACTTAACGTGCGAAGT--ATCGGGGAT
1 GGCACTTAGTGTGCGAA-TACATCAAGAAC
* * *
8033834 GGAAATTAGTGTGC-AATACATCCAGAAC
1 GGCACTTAGTGTGCGAATACATCAAGAAC
* *
8033862 GGCACTTAGTGTGCGAAGTA-A-CAAGGAT
1 GGCACTTAGTGTGCGAA-TACATCAAGAAC
8033890 GGCACTTAGTGTGCGAA-ACATCAAGAAC
1 GGCACTTAGTGTGCGAATACATCAAGAAC
*
8033918 GACACTTAGTGTGC
1 GGCACTTAGTGTGC
8033932 AAGGTATCGG
Statistics
Matches: 96, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
26 2 0.02
27 3 0.03
28 83 0.86
29 5 0.05
30 3 0.03
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (29 bp):
GGCACTTAGTGTGCGAATACATCAAGAAC
Found at i:8033961 original size:56 final size:56
Alignment explanation
Indices: 8033750--8033959 Score: 271
Period size: 56 Copynumber: 3.8 Consensus size: 56
8033740 AATTATATAT
*
8033750 GGCACTTAATGTGCGAAGTATTGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
1 GGCACTTAATGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
* * *
8033806 GGCACTTAACGTGCGAAGTATCGGGGATGGAAATTAGTGTGCAATACATCCAGAAC
1 GGCACTTAATGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
* * ** *
8033862 GGCACTTAGTGTGCGAAGTAACAAGGATGGCACTTAGTGTGCGAA-ACATCAAGAAC
1 GGCACTTAATGTGCGAAGTATCGGGGATGGCACTTAGTGTGC-AATACATCCAGAAC
* * * *
8033918 GACACTTAGTGTGC-AAGGTATCGGGTATGGCACCTAGTGTGC
1 GGCACTTAATGTGCGAA-GTATCGGGGATGGCACTTAGTGTGC
8033960 GATGCATTGA
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
55 2 0.01
56 130 0.97
57 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (56 bp):
GGCACTTAATGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
Found at i:8034083 original size:32 final size:32
Alignment explanation
Indices: 8034009--8034085 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
8033999 TGAGTATGAG
* * *
8034009 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGATAAAGGTATCTACGGAA
* * *
8034041 ATTGGTACAATATGGTAAAGGTATGTACGGGA
1 ATTGGTACAATATGATAAAGGTATCTACGGAA
8034073 ATTGGTACAATAT
1 ATTGGTACAATAT
8034086 AGTACGTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (32 bp):
ATTGGTACAATATGATAAAGGTATCTACGGAA
Found at i:8034097 original size:32 final size:32
Alignment explanation
Indices: 8034027--8034107 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
8034017 GAGATGATAC
* *
8034027 AGGTATCTACGGAAATTGGTACAATATGGTAA
1 AGGTATGTACGGAAATTGGTACAATATAGTAA
*
8034059 AGGTATGTACGGGAATTGGTACAATATAGT-A
1 AGGTATGTACGGAAATTGGTACAATATAGTAA
* *
8034090 CGTGTATGTACGAAAATT
1 AG-GTATGTACGGAAATT
8034108 CAATTAAGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 40 0.95
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (32 bp):
AGGTATGTACGGAAATTGGTACAATATAGTAA
Found at i:8036734 original size:28 final size:28
Alignment explanation
Indices: 8036700--8036764 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
8036690 TCAGTGTACG
* *
8036700 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
8036728 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
8036756 AAATATTGA
1 AAATATTGA
8036765 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:8036881 original size:39 final size:39
Alignment explanation
Indices: 8036837--8037095 Score: 455
Period size: 39 Copynumber: 6.6 Consensus size: 39
8036827 GACTTTATAA
*
8036837 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
8036876 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
8036915 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
8036954 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
8036993 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
8037032 TGGTGTTATATCTGAGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
8037071 TGGTGTTATATCCGGGCTAAAGTCC
1 TGGTGTTATATCCGGGCT-AAGTCC
8037096 TGCAGGCTAA
Statistics
Matches: 208, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 203 0.98
40 5 0.02
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:8050223 original size:44 final size:44
Alignment explanation
Indices: 8050175--8050358 Score: 125
Period size: 45 Copynumber: 4.1 Consensus size: 44
8050165 GTAGTAGGCA
*
8050175 AGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGG
1 AGCAGATTTAAGCCACCAACCTTATCTCCCTGAAGTAGCAGTGG
* * ***** * * * *
8050219 AGCAGACTGAAGATTGTAGATCTTATCTTCCTGAAGAAGCAGTGA
1 AGCAGATTTAAGCCACCA-ACCTTATCTCCCTGAAGTAGCAGTGG
** **** * * * *
8050264 AGCAGATCAAAGACGGTGAACCTTATCTCCATGAAGCAGCAATAG
1 AGCAGATTTAAG-CCACCAACCTTATCTCCCTGAAGTAGCAGTGG
* * *
8050309 AGCATATTTAAGCCACCAACCTTATCTCCCTGAAATGGCAGTGG
1 AGCAGATTTAAGCCACCAACCTTATCTCCCTGAAGTAGCAGTGG
8050353 AGCAGA
1 AGCAGA
8050359 CTGAAGACAG
Statistics
Matches: 97, Mismatches: 41, Indels: 4
0.68 0.29 0.03
Matches are distributed among these distances:
44 38 0.39
45 58 0.60
46 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (44 bp):
AGCAGATTTAAGCCACCAACCTTATCTCCCTGAAGTAGCAGTGG
Found at i:8050332 original size:134 final size:133
Alignment explanation
Indices: 8050042--8050365 Score: 368
Period size: 134 Copynumber: 2.4 Consensus size: 133
8050032 GGTGGTAGGG
* * ** *
8050042 AAGCTGATTTAAGCCACTAGCCTTATCTCTTTG-AGCAGCAGTGGAGCAGACTGAAGATTACAGA
1 AAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGAAGATTACAGA
* * * ** * * *
8050106 TCTTATCTCCCTAAGCAGTAGTGGAACAAATCGAAGACGGTGAATTTTATCTTCCCGAGGTAGTA
66 TCTTATCTCCCTAAGAAGCAGTGGAACAAATCAAAGACGGTGAACCTTATCTTCCCGAAGCAGCA
*
8050171 GGC
131 GAC
**
8050174 AAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGAAGATTGTAGA
1 AAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGAAGATTACAGA
* * *
8050239 TCTTATCTTCCTGAAGAAGCAGT-GAAGCAGATCAAAGACGGTGAACCTTATC-TCCATGAAGCA
66 TCTTATCTCCCT-AAGAAGCAGTGGAA-CAAATCAAAGACGGTGAACCTTATCTTCC-CGAAGCA
*
8050302 GCA-AT
128 GCAGAC
* * * *
8050307 AGAGCATATTTAAGCCACCAACCTTATCTCCCTGAAATGGCAGTGGAGCAGACTGAAGA
1 A-AGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGAAGA
8050366 CAGTGATTCT
Statistics
Matches: 163, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
132 29 0.18
133 46 0.28
134 88 0.54
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (133 bp):
AAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGAAGATTACAGA
TCTTATCTCCCTAAGAAGCAGTGGAACAAATCAAAGACGGTGAACCTTATCTTCCCGAAGCAGCA
GAC
Found at i:8051120 original size:19 final size:19
Alignment explanation
Indices: 8051084--8051119 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8051074 ATATATATAA
8051084 ATATGTATTTATTAAAAAT
1 ATATGTATTTATTAAAAAT
*
8051103 ATAT-TATTTTTTAAAAA
1 ATATGTATTTATTAAAAA
8051120 AAACTTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
ATATGTATTTATTAAAAAT
Found at i:8054356 original size:26 final size:24
Alignment explanation
Indices: 8054288--8054388 Score: 81
Period size: 24 Copynumber: 4.4 Consensus size: 24
8054278 CTATATGTTG
8054288 TTTTAAA-TTGTTATATA-TATTA
1 TTTTAAATTTGTTATATATTATTA
** *
8054310 -TTTATTTTTGCT-T-TATT-TTA
1 TTTTAAATTTGTTATATATTATTA
8054330 TTTTAAATTATGTTATATATTAATTA
1 TTTTAAATT-TGTTATATATT-ATTA
*
8054356 TTTTAAA-TTGTTTTATATTATCTA
1 TTTTAAATTTGTTATATATTAT-TA
*
8054380 CTTTAAATT
1 TTTTAAATT
8054389 GCTTCGTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
20 5 0.08
21 12 0.20
22 7 0.11
23 3 0.05
24 22 0.36
25 2 0.03
26 10 0.16
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTTAAATTTGTTATATATTATTA
Found at i:8054828 original size:26 final size:25
Alignment explanation
Indices: 8054776--8054828 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
8054766 TAACTATATG
* *
8054776 ATGTATGTATTTTAAACATCGTAAT
1 ATGTACGTATTTTAAACATCATAAT
* *
8054801 ATGTACGTATCTTTCAACATCATTAT
1 ATGTACGTAT-TTTAAACATCATAAT
8054827 AT
1 AT
8054829 ACATACTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.43
Consensus pattern (25 bp):
ATGTACGTATTTTAAACATCATAAT
Found at i:8066778 original size:15 final size:15
Alignment explanation
Indices: 8066739--8066783 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
8066729 CAAGAAAATC
*
8066739 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
8066754 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
8066769 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
8066784 AGATACGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.58, C:0.18, G:0.16, T:0.09
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:8076415 original size:30 final size:30
Alignment explanation
Indices: 8076381--8076441 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 30
8076371 AATAACAAAA
8076381 AATTGTAAAAGCATTCAAC-ATCTTGATATT
1 AATTGTAAAAGCATTCAACAAT-TTGATATT
8076411 AATTGTAAAAGCATTCAACAATTTGATATT
1 AATTGTAAAAGCATTCAACAATTTGATATT
8076441 A
1 A
8076442 TGCAAATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (30 bp):
AATTGTAAAAGCATTCAACAATTTGATATT
Found at i:8077499 original size:13 final size:13
Alignment explanation
Indices: 8077481--8077507 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8077471 TAAGTAAATT
8077481 TTATATTATATTA
1 TTATATTATATTA
8077494 TTATATTATATTA
1 TTATATTATATTA
8077507 T
1 T
8077508 AATGAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATATTA
Found at i:8078253 original size:5 final size:5
Alignment explanation
Indices: 8078245--8078286 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
8078235 AGTATTGGTC
8078245 TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TT
1 TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TT
8078287 ATGAGTATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (5 bp):
TTGAA
Found at i:8078603 original size:20 final size:20
Alignment explanation
Indices: 8078578--8078628 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
8078568 ACTATGATTG
*
8078578 GAATTGGAAATATTGTAT-GT
1 GAATT-GAAATATTGGATAGT
8078598 GAATTGAAA-ATTGGATAGT
1 GAATTGAAATATTGGATAGT
*
8078617 AAATTGAAATAT
1 GAATTGAAATAT
8078629 GCAATGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 6 0.22
19 14 0.52
20 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (20 bp):
GAATTGAAATATTGGATAGT
Found at i:8083604 original size:13 final size:13
Alignment explanation
Indices: 8083586--8083612 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8083576 AATTAATAAG
8083586 TTATTAAAATTTT
1 TTATTAAAATTTT
8083599 TTATTAAAATTTT
1 TTATTAAAATTTT
8083612 T
1 T
8083613 CCCTTAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTAAAATTTT
Found at i:8092620 original size:17 final size:17
Alignment explanation
Indices: 8092598--8092647 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
8092588 TCATTTTATC
8092598 TTTTTAATTTCATTTAA
1 TTTTTAATTTCATTTAA
8092615 TTTTT-ATTTC------
1 TTTTTAATTTCATTTAA
8092625 TTTTTAATTTCATTTAA
1 TTTTTAATTTCATTTAA
8092642 TTTTTA
1 TTTTTA
8092648 TTCCAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 14
0.65 0.00 0.35
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
16 5 0.19
17 11 0.42
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTAATTTCATTTAA
Found at i:8092629 original size:27 final size:27
Alignment explanation
Indices: 8092596--8092649 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
8092586 AATCATTTTA
8092596 TCTTTTTAATTTCATTTAATTTTTATT
1 TCTTTTTAATTTCATTTAATTTTTATT
8092623 TCTTTTTAATTTCATTTAATTTTTATT
1 TCTTTTTAATTTCATTTAATTTTTATT
8092650 CCAGCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (27 bp):
TCTTTTTAATTTCATTTAATTTTTATT
Found at i:8092904 original size:21 final size:20
Alignment explanation
Indices: 8092880--8092925 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
8092870 CTTTATAGTT
8092880 AAATAACTCAATTTTCTGTAA
1 AAATAACT-AATTTTCTGTAA
* *
8092901 AAAT-A-TAATTTTTTTTAA
1 AAATAACTAATTTTCTGTAA
8092919 AAATAAC
1 AAATAAC
8092926 ATTATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 14 0.67
19 2 0.10
20 1 0.05
21 4 0.19
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (20 bp):
AAATAACTAATTTTCTGTAA
Found at i:8092912 original size:18 final size:18
Alignment explanation
Indices: 8092889--8092923 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8092879 TAAATAACTC
8092889 AATTTTCTGTAAAAATAT
1 AATTTTCTGTAAAAATAT
* *
8092907 AATTTTTTTTAAAAATA
1 AATTTTCTGTAAAAATA
8092924 ACATTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
AATTTTCTGTAAAAATAT
Found at i:8092933 original size:18 final size:18
Alignment explanation
Indices: 8092898--8092946 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
8092888 CAATTTTCTG
*
8092898 TAAAAATATA-ATTTTTTT
1 TAAAAATA-ACATTATTTT
8092916 TAAAAATAACATTATTTT
1 TAAAAATAACATTATTTT
8092934 TAGAAAAATAACA
1 T--AAAAATAACA
8092947 AACGATCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.59
20 10 0.37
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAAAATAACATTATTTT
Found at i:8095195 original size:43 final size:43
Alignment explanation
Indices: 8095148--8095233 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
8095138 ATGATAATAT
8095148 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
1 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
8095191 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
1 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
8095234 GATAAAAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (43 bp):
AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
Found at i:8096715 original size:13 final size:13
Alignment explanation
Indices: 8096699--8096749 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
8096689 AACATTATTA
8096699 TTAAATATTTAAT
1 TTAAATATTTAAT
* * *
8096712 TTAAAAACATTATT
1 TTAAATA-TTTAAT
8096726 ATTAAATATTTAAT
1 -TTAAATATTTAAT
8096740 TTAAATATTT
1 TTAAATATTT
8096750 TTAATAATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
13 16 0.53
14 8 0.27
15 6 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
TTAAATATTTAAT
Found at i:8096726 original size:28 final size:28
Alignment explanation
Indices: 8096686--8096744 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
8096676 AAGATTATTG
8096686 AAAAACATTATTATTAAATATTTAATTT
1 AAAAACATTATTATTAAATATTTAATTT
8096714 AAAAACATTATTATTAAATATTTAATTT
1 AAAAACATTATTATTAAATATTTAATTT
8096742 AAA
1 AAA
8096745 TATTTTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (28 bp):
AAAAACATTATTATTAAATATTTAATTT
Found at i:8099399 original size:2 final size:2
Alignment explanation
Indices: 8099392--8099417 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8099382 AATAGGTTAG
8099392 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8099418 TGAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8109736 original size:2 final size:2
Alignment explanation
Indices: 8109731--8109765 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8109721 TTTTATTCAA
8109731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8109766 GCTTAAATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8111114 original size:21 final size:21
Alignment explanation
Indices: 8111088--8111129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8111078 CTACAAACAA
8111088 TTATAAATTT-TTATATTTTTT
1 TTATAAATTTATTA-ATTTTTT
*
8111109 TTATAATTTTATTAATTTTTT
1 TTATAAATTTATTAATTTTTT
8111130 ATATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATAAATTTATTAATTTTTT
Found at i:8111226 original size:20 final size:19
Alignment explanation
Indices: 8111163--8111240 Score: 59
Period size: 19 Copynumber: 3.9 Consensus size: 19
8111153 TTTATTATTT
* *
8111163 AAAAAATCTAAAAATATAAA
1 AAAAAATCT-AAAATTTTAA
*
8111183 AAAAAACTCCCAAAATTTTGAA
1 AAAAAA-T-CTAAAATTTT-AA
8111205 AAAAAATCTAAAATTTCT-A
1 AAAAAATCTAAAATTT-TAA
* *
8111224 AAAATACCTAAAATTTT
1 AAAAAATCTAAAATTTT
8111241 CCCTAAAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
18 1 0.02
19 15 0.31
20 14 0.29
21 9 0.19
22 9 0.19
ACGTcount: A:0.60, C:0.12, G:0.01, T:0.27
Consensus pattern (19 bp):
AAAAAATCTAAAATTTTAA
Found at i:8111227 original size:21 final size:20
Alignment explanation
Indices: 8111163--8111227 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 20
8111153 TTTATTATTT
* *
8111163 AAAAAATCTAAAAATATAAA
1 AAAAAATCTAAAATTTTAAA
* *
8111183 AAAAAACTCCCAAAATTTTGAA
1 AAAAAA-T-CTAAAATTTTAAA
8111205 AAAAAATCTAAAATTTCTAAA
1 AAAAAATCTAAAATTT-TAAA
8111226 AA
1 AA
8111228 TACCTAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
20 14 0.39
21 7 0.19
22 15 0.42
ACGTcount: A:0.65, C:0.11, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAATCTAAAATTTTAAA
Done.