Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 311 of 425
Found at i:96771284 original size:28 final size:28
Alignment explanation
Indices: 96771237--96771301 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
96771227 AAATTAACCC
*
96771237 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
96771265 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
96771293 TAGGGGTAT
1 TAGGGGTAT
96771302 TCTAATAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:96775590 original size:49 final size:50
Alignment explanation
Indices: 96775460--96775605 Score: 195
Period size: 50 Copynumber: 2.9 Consensus size: 50
96775450 ATCTATTGTG
* **
96775460 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
96775510 AGGTCACCTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
96775560 -GGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
96775606 GCTTTGGCTA
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 39 0.47
50 44 0.53
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:96782098 original size:30 final size:30
Alignment explanation
Indices: 96782042--96782098 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
96782032 TTCGAACCTT
*
96782042 GGGGGCAAAAGTGCAAATATGCAAAATTTA
1 GGGGGCAAAAGTGCAAATATGAAAAATTTA
* *
96782072 GGGGTCAAAA-TGCAAATTTGTAAAAAT
1 GGGGGCAAAAGTGCAAATATG-AAAAAT
96782099 ATGATTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.44, C:0.09, G:0.25, T:0.23
Consensus pattern (30 bp):
GGGGGCAAAAGTGCAAATATGAAAAATTTA
Found at i:96788221 original size:48 final size:48
Alignment explanation
Indices: 96788148--96788432 Score: 272
Period size: 48 Copynumber: 6.0 Consensus size: 48
96788138 GACATTTGGG
* *
96788148 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
** * * * * *
96788196 CAATATGAGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
96788244 TGTTGTGAGAGCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
96788291 TTGATACGTGTGCTAGTGTAAGACTATATCTGGGACATGGCATCGG-CA
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
96788339 TTGAGACGAGAGCTAGTGTAAAACCATGTCTGGGACATGGCATCTGCC-
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
96788387 TCGACATGTGAGCTAGTGTAGGACCGTGT-TGGGACATGGCATCGGC
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
96788433 AATTCACCCT
Statistics
Matches: 191, Mismatches: 43, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
47 18 0.09
48 172 0.90
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:96788329 original size:96 final size:95
Alignment explanation
Indices: 96788163--96788435 Score: 307
Period size: 96 Copynumber: 2.9 Consensus size: 95
96788153 TGTGTGCTAG
* * *
96788163 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAGAGCCAGTGTAAGACCATATTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATATGTGAGCTAGTGTAAGACCATA-TTG
* * *
96788227 GAACATGGCATCGGCAATGTTG-TGAGAGCCAA
64 GGACATGGCATCGGCAATG-AGACGAGAGCCAA
* * * * *
96788259 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATACGTGTGCTAGTGTAAGACTATATCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATAT-TGG
* * *
96788324 GACATGGCATCGGCATTGAGACGAGAGCTAG
65 GACATGGCATCGGCAATGAGACGAGAGCCAA
* * * * * * *
96788355 TGTAAAACCATGTCTGGGACATGGCATCTGCCTCGACATGTGAGCTAGTGTAGGACCGTGTTGGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATATTGGG
96788420 ACATGGCATCGGCAAT
66 ACATGGCATCGGCAAT
96788436 TCACCCTCTT
Statistics
Matches: 147, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
95 23 0.16
96 124 0.84
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATATTGGG
ACATGGCATCGGCAATGAGACGAGAGCCAA
Found at i:96804345 original size:34 final size:34
Alignment explanation
Indices: 96804302--96804372 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
96804292 GTTTCAGCGG
96804302 AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
1 AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
96804336 AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
1 AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
96804370 AGT
1 AGT
96804373 ATTGAAATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (34 bp):
AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
Found at i:96807572 original size:16 final size:15
Alignment explanation
Indices: 96807540--96807578 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
96807530 TGATAATAAC
96807540 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
96807556 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
96807572 TAATTAT
1 TAATTAT
96807579 TTTAAACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:96808320 original size:24 final size:23
Alignment explanation
Indices: 96808293--96808346 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
96808283 TTTTCTCCTA
*
96808293 AATTTT-AATTTTATTTAATTATTT
1 AATTTTCAA-TTTATTGAATTA-TT
96808317 AATTTTTCAATTTATTGAATTATT
1 AA-TTTTCAATTTATTGAATTATT
96808341 AATTTT
1 AATTTT
96808347 TTATACTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.15
24 6 0.22
25 15 0.56
26 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATTATT
Found at i:96813254 original size:38 final size:39
Alignment explanation
Indices: 96813131--96813312 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
96813121 TCGAATAATG
* * * *
96813131 TCCGGGCTAAATCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCT-AATCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * *
96813171 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTA--ATCCCGAAGGCATTCGTGCAAGTTACTAAA
*
96813211 TCCGGGCTAATCCCGAAGGCCTT-GTGCAAGTTACTAAA
1 TCCGGGCTAATCCCGAAGGCATTCGTGCAAGTTACTAAA
* * **
96813249 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAA-TCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
96813290 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGC-TAATCCCGAAGGCATT
96813313 TGAGCGAGTC
Statistics
Matches: 115, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
38 23 0.20
39 23 0.20
40 58 0.50
41 11 0.10
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAATCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:96813264 original size:39 final size:39
Alignment explanation
Indices: 96813184--96813281 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
96813174 GGACTAGGAT
* *
96813184 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAATC
1 CCGAAGGCATTCGTGCAAGTTAATAAACCCGGGCTAATC
* * *
96813223 CCGAAGGCCTT-GTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCAAGTTAATAAACCCGGGCTAA-TC
96813262 CCGAAGGCATTCGTGCAAGT
1 CCGAAGGCATTCGTGCAAGT
96813282 CGCTATAACC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 21 0.41
39 22 0.43
40 8 0.16
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCAAGTTAATAAACCCGGGCTAATC
Found at i:96815250 original size:25 final size:25
Alignment explanation
Indices: 96815221--96815268 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96815211 TTATAATATG
* * *
96815221 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
96815246 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
96815269 GTTTATCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:96815337 original size:20 final size:20
Alignment explanation
Indices: 96815312--96815370 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
96815302 TAAATATGGT
96815312 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
96815332 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
96815352 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
96815371 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:96815352 original size:11 final size:11
Alignment explanation
Indices: 96815316--96815370 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96815306 TATGGTATGT
96815316 ATGATATGCAC
1 ATGATATGCAC
* *
96815327 ATGAAATG--T
1 ATGATATGCAC
96815336 ATGATATGCAC
1 ATGATATGCAC
*
96815347 ATGATATG--T
1 ATGATATGCAC
96815356 ATGATATGCAC
1 ATGATATGCAC
96815367 ATGA
1 ATGA
96815371 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:96815448 original size:24 final size:24
Alignment explanation
Indices: 96815421--96815539 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
96815411 GAGGAAGTGA
*
96815421 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
96815445 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
96815468 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
96815492 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
96815516 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
96815540 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:96815490 original size:47 final size:48
Alignment explanation
Indices: 96815421--96815539 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
96815411 GAGGAAGTGA
96815421 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
96815468 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
96815516 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
96815540 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:96815766 original size:31 final size:31
Alignment explanation
Indices: 96815731--96815825 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
96815721 CGTTTACAGT
96815731 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
96815762 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
96815793 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
96815824 AA
1 AA
96815826 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:96817481 original size:40 final size:40
Alignment explanation
Indices: 96817436--96817601 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
96817426 CGGAATATAA
96817436 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96817476 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
96817516 CCGGATATAGCCACTAGCAC-ATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
96817555 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96817594 CCGGATAT
1 CCGGATAT
96817602 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 45 0.42
40 61 0.58
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96826592 original size:25 final size:25
Alignment explanation
Indices: 96826563--96826610 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96826553 TTATAATATG
* * *
96826563 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
96826588 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
96826611 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:96826679 original size:20 final size:20
Alignment explanation
Indices: 96826654--96826712 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
96826644 TAAATATGGT
96826654 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
96826674 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
96826694 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
96826713 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:96826694 original size:11 final size:11
Alignment explanation
Indices: 96826658--96826712 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96826648 TATGGTATGT
96826658 ATGATATGCAC
1 ATGATATGCAC
* *
96826669 ATGAAATG--T
1 ATGATATGCAC
96826678 ATGATATGCAC
1 ATGATATGCAC
*
96826689 ATGATATG--T
1 ATGATATGCAC
96826698 ATGATATGCAC
1 ATGATATGCAC
96826709 ATGA
1 ATGA
96826713 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:96826841 original size:23 final size:23
Alignment explanation
Indices: 96826763--96826904 Score: 207
Period size: 24 Copynumber: 6.0 Consensus size: 23
96826753 GAGGAAGTGA
96826763 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
96826786 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
96826810 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
96826834 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
96826857 -AAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
96826880 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
96826904 A
1 A
96826905 TGATAAAGCA
Statistics
Matches: 111, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
22 20 0.18
23 24 0.22
24 57 0.51
25 10 0.09
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:96826856 original size:47 final size:46
Alignment explanation
Indices: 96826763--96826904 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 46
96826753 GAGGAAGTGA
96826763 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
96826810 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
* *
96826857 -AAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
96826904 A
1 A
96826905 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
45 20 0.23
46 11 0.12
47 34 0.39
48 23 0.26
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:96827130 original size:31 final size:31
Alignment explanation
Indices: 96827095--96827158 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
96827085 CGTTTACAGT
*
96827095 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
96827126 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
96827157 AA
1 AA
96827159 TAATGAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATAAGAAATATGA
Found at i:96827167 original size:46 final size:45
Alignment explanation
Indices: 96827115--96827218 Score: 156
Period size: 46 Copynumber: 2.3 Consensus size: 45
96827105 GCCCAGTAAT
96827115 ATGAAATATGAAAAGGCTTCGGCCCAGTAA-TAAGAAATATGAAATA
1 ATGAAATATGAAAAGGCTTCGGCCCAGTAATTAAGAAATA-G-AATA
* * *
96827161 ATGAAATATGAAAAGGCTTCGGCCCAGTAATTATGAAATAGTATT
1 ATGAAATATGAAAAGGCTTCGGCCCAGTAATTAAGAAATAGAATA
96827206 ATGAAATATGAAA
1 ATGAAATATGAAA
96827219 TATGAAAAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
45 15 0.28
46 31 0.57
47 8 0.15
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (45 bp):
ATGAAATATGAAAAGGCTTCGGCCCAGTAATTAAGAAATAGAATA
Found at i:96827168 original size:15 final size:14
Alignment explanation
Indices: 96827143--96827173 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
96827133 TCGGCCCAGT
96827143 AATAAGAAATATGA
1 AATAAGAAATATGA
96827157 AATAATGAAATATGA
1 AATAA-GAAATATGA
96827172 AA
1 AA
96827174 AGGCTTCGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.23
Consensus pattern (14 bp):
AATAAGAAATATGA
Found at i:96830247 original size:40 final size:39
Alignment explanation
Indices: 96830126--96830280 Score: 204
Period size: 39 Copynumber: 3.9 Consensus size: 39
96830116 TGTGTATGAA
* *
96830126 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
96830165 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
96830204 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * *
96830244 TGTGCTG-GTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGC-GAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
96830281 GTTTGAACGA
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 63 0.60
40 41 0.39
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:96830266 original size:79 final size:79
Alignment explanation
Indices: 96830126--96830280 Score: 206
Period size: 79 Copynumber: 2.0 Consensus size: 79
96830116 TGTGTATGAA
* * *
96830126 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGTTATCATAACCGGGCTAA
96830191 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * **
96830204 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTG-GTTATCATAACCGGGCT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAATGTGC-GAGTTATCATAACCGGGCT
*
96830268 ATGTCCCGAAGGC
64 AAGTCCCGAAGGC
96830281 GTTTGAACGA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 25 0.38
79 31 0.47
80 10 0.15
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGTTATCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:96836181 original size:3 final size:3
Alignment explanation
Indices: 96836126--96836162 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
96836116 TAAGTTGCTG
96836126 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
96836163 AAATTTACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:96842217 original size:246 final size:243
Alignment explanation
Indices: 96841847--96842341 Score: 662
Period size: 246 Copynumber: 2.0 Consensus size: 243
96841837 TTTTTTGTTT
*
96841847 AAAAATAATTGAAACAGCTAGAAAAAAACTAAAAAAGCTTGATTTTATGGTGACACGTGCATGAG
1 AAAAATAATTGAAACAGCTAGAAAAAAACTAAAAAAGCCTGATTTTATGGTGACACGTGCATGAG
* * * * *
96841912 TGGTCACGTCAATGACAGGTTGTCATGCCGGTGTCGGGTTTGGGACCAAACCTTACACATCG-AA
66 CGGTCACATCAATGACAAGTTGTCATGCCGGTGCCGGGTTTGGGACCAAACCCTACACATCGAAA
* * *
96841976 AAAAAAAA-GGCCATAAAACAATAGAGTTCATTCAATTGAATAAAAAAGAAAAAAATTATCTTTT
131 AAAAAAAACAGCCATAAAACAAGAGAGTTCATTCAATTGAATAAAAAAGAAAAAAA--AT-GTTT
*
96842040 TTTTTTTTGAAGTTTTTTGAGAAGAGTAGAATTTTTTTTAGGCAG-TTACAGAG
193 TCTTTTTTGAAGTTTTTTGAGAAGAGTAGAA--TTTTTTAGGCAGTTTA-AGAG
* * * *
96842093 AAAAATAATTGAAGCAG-TTGAAAAAAAATTGAAAAAGCCTGATTTTATGGTGAC-CTGTGCATG
1 AAAAATAATTGAAACAGCTAG-AAAAAAACTAAAAAAGCCTGATTTTATGGTGACAC-GTGCATG
* * * *
96842156 AGCGGTCACATCAGT-AGCAAGTTGTTA-GACTGGTGCCGGGTTTGGGACCAAACCCTACACATT
64 AGCGGTCACATCAATGA-CAAGTTGTCATG-CCGGTGCCGGGTTTGGGACCAAACCCTACACATC
* *
96842219 GAAAAAAAAAAACCAGCCATCAAACAAGAGAGTTCATTCAATTGAATAAAAAAGGAAAAAAATGT
127 GAAAAAAAAAAA-CAGCCATAAAACAAGAGAGTTCATTCAATTGAATAAAAAAGAAAAAAAATGT
96842284 TTTCTTTTTTGAAGTTTTTTGAGAAGAGTAGAATTTTTTAGGCAGTTTAAGAG
191 TTTCTTTTTTGAAGTTTTTTGAGAAGAGTAGAATTTTTTAGGCAGTTTAAGAG
96842337 AAAAA
1 AAAAA
96842342 AAAAATGGAG
Statistics
Matches: 221, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
244 21 0.10
245 8 0.04
246 137 0.62
247 12 0.05
249 43 0.19
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (243 bp):
AAAAATAATTGAAACAGCTAGAAAAAAACTAAAAAAGCCTGATTTTATGGTGACACGTGCATGAG
CGGTCACATCAATGACAAGTTGTCATGCCGGTGCCGGGTTTGGGACCAAACCCTACACATCGAAA
AAAAAAAACAGCCATAAAACAAGAGAGTTCATTCAATTGAATAAAAAAGAAAAAAAATGTTTTCT
TTTTTGAAGTTTTTTGAGAAGAGTAGAATTTTTTAGGCAGTTTAAGAG
Found at i:96848905 original size:21 final size:21
Alignment explanation
Indices: 96848880--96848919 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
96848870 TAGAAATTTA
96848880 GGAAA-AGAAAAAGAATAAATT
1 GGAAATAGAAAAA-AATAAATT
*
96848901 GGAAATAGAAATAAATAAA
1 GGAAATAGAAAAAAATAAA
96848920 GATAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (21 bp):
GGAAATAGAAAAAAATAAATT
Found at i:96858423 original size:6 final size:6
Alignment explanation
Indices: 96858412--96858441 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
96858402 TTTCAAAATT
*
96858412 AAATAA AAATAA AAGTAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA
96858442 TATGAGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:96862995 original size:48 final size:49
Alignment explanation
Indices: 96862884--96862996 Score: 140
Period size: 48 Copynumber: 2.3 Consensus size: 49
96862874 ATGCCCGTGT
* * * *
96862884 GACACGCCCGTGTGAG-GTGGCTTAGGCCGTGTTTAGAGTCTGCTAAATA
1 GACACGGCCGTGTG-GTGTGGCTTAGGCAGTGTTTACAATCTGCTAAATA
*
96862933 GACACGGCCGTGTGGTGTGGCTTAGGCAGTG-TTACAATCTGTTAAATA
1 GACACGGCCGTGTGGTGTGGCTTAGGCAGTGTTTACAATCTGCTAAATA
* *
96862981 GACACGGGCTTGTGGT
1 GACACGGCCGTGTGGT
96862997 CTACCCCTGC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
48 29 0.52
49 27 0.48
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (49 bp):
GACACGGCCGTGTGGTGTGGCTTAGGCAGTGTTTACAATCTGCTAAATA
Found at i:96866946 original size:20 final size:21
Alignment explanation
Indices: 96866921--96866960 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
96866911 CACTTCAAGC
*
96866921 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
96866941 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
96866961 CCCTGTTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:96868244 original size:49 final size:49
Alignment explanation
Indices: 96868181--96868312 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
96868171 GCACATTAAA
** * *
96868181 GTCGATGCTGTGTCCCAGACAGTTCTTACACTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GT
* * * *
96868230 GTTGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
** *
96868279 GTCGATGCCATGTCCTGGATAGGTCTTACACTGA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA
96868313 AAAACAACAA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:96869954 original size:19 final size:19
Alignment explanation
Indices: 96869918--96869955 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
96869908 CCTCTATAAC
*
96869918 TTTGAAAATTTATTTATGT
1 TTTGAAAATTTATGTATGT
96869937 TTTGAAAAATTT-TGTATGT
1 TTTG-AAAATTTATGTATGT
96869956 GTTCGGTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (19 bp):
TTTGAAAATTTATGTATGT
Found at i:96870363 original size:23 final size:24
Alignment explanation
Indices: 96870313--96870357 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
96870303 TAGCCCTTTC
* *
96870313 GAGCTTCCCATATATGGTTCTTGT
1 GAGCTTCCCATATATAGCTCTTGT
96870337 GAGCTTCCCAT-TATAGCTCTT
1 GAGCTTCCCATATATAGCTCTT
96870358 CGGAGCGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (24 bp):
GAGCTTCCCATATATAGCTCTTGT
Found at i:96871392 original size:30 final size:31
Alignment explanation
Indices: 96871335--96871394 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
96871325 TTCCGAGCTT
*
96871335 GGGGCTAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGCTAAAAGTGTAAATATGCAAAAGTTTA
* * *
96871366 GGGGC-AAAAGTGTAATTTTGCCAAAGTTT
1 GGGGCTAAAAGTGTAAATATGCAAAAGTTT
96871395 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (31 bp):
GGGGCTAAAAGTGTAAATATGCAAAAGTTTA
Found at i:96871817 original size:55 final size:54
Alignment explanation
Indices: 96871730--96871985 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
96871720 ATTAGGGTTT
*
96871730 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * ** *
96871785 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATCAGTAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
96871840 AAAGG-TCCCCATGTAAGACCATGCCAAGGCTTGGC-ATTGGTGAG-TTCATAAGGG
1 -AAGGAT-ACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
96871894 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAG-TT-TAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
** * *
96871943 AAGGATACCACATAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
96871986 GTACTCATGT
Statistics
Matches: 166, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
49 38 0.23
51 3 0.02
53 39 0.23
54 13 0.08
55 40 0.24
56 33 0.20
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:96878687 original size:28 final size:28
Alignment explanation
Indices: 96878643--96878717 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
96878633 TGGCCCCTTA
* *
96878643 AGGCCAAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
96878671 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
96878699 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
96878718 GTCATGCAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:96879232 original size:21 final size:21
Alignment explanation
Indices: 96879208--96879247 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96879198 ACTAAACAAC
*
96879208 AAGTGACTCATAAATCATCTT
1 AAGTCACTCATAAATCATCTT
*
96879229 AAGTCACTCTTAAATCATC
1 AAGTCACTCATAAATCATC
96879248 CATGACCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.33
Consensus pattern (21 bp):
AAGTCACTCATAAATCATCTT
Found at i:96885136 original size:46 final size:46
Alignment explanation
Indices: 96885086--96885261 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
96885076 TGGTTGAGCA
96885086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96885132 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
96885177 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96885225 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96885262 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:96885242 original size:93 final size:93
Alignment explanation
Indices: 96885083--96885253 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
96885073 GGATGGTTGA
* * *
96885083 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
96885148 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
96885176 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
96885241 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96885254 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96892705 original size:46 final size:46
Alignment explanation
Indices: 96892655--96892827 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
96892645 TGGTTGAGCA
96892655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96892701 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
96892746 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
96892794 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
96892828 GGGCGGGTTA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:96892811 original size:93 final size:93
Alignment explanation
Indices: 96892652--96892822 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
96892642 GGATGGTTGA
* *
96892652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96892717 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
96892745 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96892810 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96892823 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96900022 original size:21 final size:20
Alignment explanation
Indices: 96899994--96900032 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
96899984 ACTAAACAAC
96899994 AAGTACTCACAAATCATCTT
1 AAGTACTCACAAATCATCTT
**
96900014 AAGTCACTCTTAAATCATC
1 AAGT-ACTCACAAATCATC
96900033 CATGACCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (20 bp):
AAGTACTCACAAATCATCTT
Found at i:96902356 original size:13 final size:13
Alignment explanation
Indices: 96902318--96902363 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
96902308 CATAGGTGAA
96902318 ATGTGTTTATTTTG
1 ATGT-TTTATTTTG
96902332 ATGTTTTA---TG
1 ATGTTTTATTTTG
*
96902342 ATATTTTATTTTG
1 ATGTTTTATTTTG
96902355 ATGTTTTAT
1 ATGTTTTAT
96902364 GGTAGAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
10 9 0.33
13 14 0.52
14 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65
Consensus pattern (13 bp):
ATGTTTTATTTTG
Found at i:96903025 original size:55 final size:55
Alignment explanation
Indices: 96902965--96903220 Score: 205
Period size: 55 Copynumber: 4.8 Consensus size: 55
96902955 ATTAGGGTTT
* *
96902965 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGA
* * * *
96903020 AAGGATATCATGTAAGACCATATCAAGACATGGC-ATTGATAA-GTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTT--TCTAAGG-A
* * * * * *
96903076 AAGG-TCCCATGTAAGACTATGGCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTC-TAAGGA
* *
96903128 AAGGATACCATGTAAGACCATGTCGAGACATGG-AAATGGT-AGGTTTC--A--A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGA
* * ** * *
96903177 AGGGATACCACGTAAGACCATGAAAAGTCATGG-AAATGGTAAGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGG
96903221 CACCCGTGTA
Statistics
Matches: 163, Mismatches: 29, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
49 34 0.21
50 3 0.02
51 1 0.01
52 6 0.04
53 37 0.23
54 11 0.07
55 66 0.40
56 5 0.03
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGA
Found at i:96903432 original size:16 final size:16
Alignment explanation
Indices: 96903411--96903441 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
96903401 ATAAATTTGA
96903411 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
96903427 TTAAGTAAGTAAGTA
1 TTAAGTAAGTAAGTA
96903442 AGTGAAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:96905364 original size:22 final size:23
Alignment explanation
Indices: 96905339--96905381 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
96905329 ATGCCATATC
*
96905339 ATAAACA-ACCAAATTCATGCTT
1 ATAAACATACCAAAATCATGCTT
*
96905361 ATAATCATACCAAAATCATGC
1 ATAAACATACCAAAATCATGC
96905382 CAAAACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.26
Consensus pattern (23 bp):
ATAAACATACCAAAATCATGCTT
Found at i:96916880 original size:39 final size:39
Alignment explanation
Indices: 96916686--96916883 Score: 252
Period size: 39 Copynumber: 5.1 Consensus size: 39
96916676 GGATTCCATT
* *
96916686 CCAGCACGTAGCCTGCGGACTTCAAGTCCGGATATATTT
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
96916725 CCAGAACATAGCCTGCGGACTTCAAGTCCGGATATATTT
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * **
96916764 CCAGGACATATCCTATGGACTTCAAGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* ** * *
96916803 CCAGCAAATAGCCTATGGACCTCATGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * *
96916842 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
96916881 CCA
1 CCA
96916884 ATATCATGCA
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 144 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
Found at i:96925555 original size:40 final size:40
Alignment explanation
Indices: 96925510--96925677 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
96925500 CGGAATATAA
96925510 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96925550 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
96925590 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
96925630 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96925670 CCGGATAT
1 CCGGATAT
96925678 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96933543 original size:40 final size:40
Alignment explanation
Indices: 96933498--96933664 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
96933488 CGGAATATAA
96933498 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96933538 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
96933578 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
96933618 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96933657 CCGGATAT
1 CCGGATAT
96933665 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96941528 original size:40 final size:40
Alignment explanation
Indices: 96941483--96941649 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
96941473 CGGAATATAA
96941483 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96941523 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
96941563 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
96941603 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96941642 CCGGATAT
1 CCGGATAT
96941650 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96943815 original size:39 final size:39
Alignment explanation
Indices: 96943771--96943965 Score: 225
Period size: 39 Copynumber: 5.0 Consensus size: 39
96943761 CCAGATTCCC
*
96943771 TTCCAGCACATAGCCTGCGGACTTCAAGTCTGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * *
96943810 TTCCAGAACATAGCCTGTGGACTTTAAGTCCGAATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
*
96943849 TTCTAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * * *
96943888 TCCCATCATATAGCCTGCTGACCTCATA-TCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCA-AGTCCGGATATAT
* * *
96943927 TCCCA-C-CATTAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACA-TAGCCTGCGGACTTCAAGTCCGGATATAT
96943965 T
1 T
96943966 CCCAATATTG
Statistics
Matches: 134, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 28 0.21
39 104 0.78
40 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
Found at i:96954619 original size:9 final size:9
Alignment explanation
Indices: 96954605--96954641 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
96954595 TATAGTTTGA
96954605 TATTCGAAT
1 TATTCGAAT
96954614 TATTCGAAT
1 TATTCGAAT
96954623 TATTC-AAGT
1 TATTCGAA-T
96954632 TATTCGAAT
1 TATTCGAAT
96954641 T
1 T
96954642 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:96957502 original size:40 final size:40
Alignment explanation
Indices: 96957440--96957633 Score: 270
Period size: 40 Copynumber: 4.9 Consensus size: 40
96957430 TACCAGCTCG
* * * *
96957440 TAGCCTGC-AGGTCTCT-AGCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGA-GTCTTTAAGCCCGGATAACATTCCAGCA-TA
96957480 -AGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCATA
*
96957519 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCATA
*
96957559 TAGCCTGCAAGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCATA
*
96957599 TAGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCA
1 TAGCCTGCGAGTCTTTAAGCCCGGATAAC-ATTCCA
96957634 CAAGTATCAT
Statistics
Matches: 141, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.11
40 126 0.89
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TAGCCTGCGAGTCTTTAAGCCCGGATAACATTCCAGCATA
Found at i:96961560 original size:48 final size:48
Alignment explanation
Indices: 96961508--96961684 Score: 187
Period size: 48 Copynumber: 3.7 Consensus size: 48
96961498 TGCCAAGGTC
* * *
96961508 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATCTCATTGCT
* * * *
96961556 GATGCCATGTCCTAGACATGGTCTTACACTTGCTCTCA-CAACATTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATC-TCATTGCT
* * * * * *
96961604 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTAATATC-TTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATCTCATT-GCT
* *
96961652 AACGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
96961685 ACACATATCA
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 3 0.03
48 103 0.97
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATCTCATTGCT
Found at i:96970215 original size:39 final size:39
Alignment explanation
Indices: 96970141--96970288 Score: 181
Period size: 39 Copynumber: 3.8 Consensus size: 39
96970131 GCTACTCGTT
* * * *
96970141 CAAATGCCTTCGAGACATAGCCCCGTTAT-AGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGATATCA-TAACTCGCA
96970181 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
96970220 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
96970259 CAATTACCTTCGGGCTTAGCCCGGTTATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
96970289 CCTGAACATT
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 85 0.87
40 13 0.13
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:96970289 original size:39 final size:39
Alignment explanation
Indices: 96970173--96970289 Score: 189
Period size: 39 Copynumber: 3.0 Consensus size: 39
96970163 CCGTTATAGT
* *
96970173 AACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATCAT
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
96970212 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
* * *
96970251 AACTTGCACAATTACCTTCGGGCTTAGCCCGGTTATCAC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
96970290 CTGAACATTC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (39 bp):
AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
Found at i:96978165 original size:39 final size:39
Alignment explanation
Indices: 96978085--96978194 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
96978075 GCTACTCGTT
* *
96978085 CAAATGCCTTCGGGACATAGCCCGGTTAT-AGTAACTAGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATCA-CAACTAGCA
* * *
96978125 CAAATGCCTTCGGGCTTAGCCCAGATATCACAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTATCACAACTAGCA
*
96978164 CAATTGCCTTCGGGCTTAGCCCGGTTATCAC
1 CAAATGCCTTCGGGCTTAGCCCGGTTATCAC
96978195 CCGAACATTC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 46 0.75
40 15 0.25
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATCACAACTAGCA
Found at i:96988761 original size:18 final size:18
Alignment explanation
Indices: 96988740--96988776 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
96988730 ATTCGTGGTG
*
96988740 TTTTGAAAACATATATCC
1 TTTTGAAAAAATATATCC
*
96988758 TTTTGAAAAAATGTATCC
1 TTTTGAAAAAATATATCC
96988776 T
1 T
96988777 AAAGCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (18 bp):
TTTTGAAAAAATATATCC
Found at i:96989117 original size:34 final size:34
Alignment explanation
Indices: 96989067--96989152 Score: 138
Period size: 34 Copynumber: 2.6 Consensus size: 34
96989057 GCCCATTTCA
96989067 ATTACAAT-ACAGTATCAGTGTGAGCCTTAGCCC
1 ATTACAATAACAGTATCAGTGTGAGCCTTAGCCC
* * *
96989100 ATTACAATAACAGTATCAGTGTGGGCTTTATCCC
1 ATTACAATAACAGTATCAGTGTGAGCCTTAGCCC
96989134 ATTACAATAACAGTATCAG
1 ATTACAATAACAGTATCAG
96989153 AAAATGCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 8 0.16
34 41 0.84
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (34 bp):
ATTACAATAACAGTATCAGTGTGAGCCTTAGCCC
Found at i:96992209 original size:27 final size:27
Alignment explanation
Indices: 96992168--96992259 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
96992158 GGGCAAAACA
* *
96992168 ATCATTTTACCCTACAGGGGTATGTCG
1 ATCATTTTACACTACAAGGGTATGTCG
* * *
96992195 GTCATTTTTCACTACAAGGGTATTTCG
1 ATCATTTTACACTACAAGGGTATGTCG
* * *
96992222 ATAATTTTACACTATAAGGGTATTTCG
1 ATCATTTTACACTACAAGGGTATGTCG
*
96992249 ATAATTTTACA
1 ATCATTTTACA
96992260 AATCGGAGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
ATCATTTTACACTACAAGGGTATGTCG
Found at i:96992274 original size:27 final size:26
Alignment explanation
Indices: 96992212--96992291 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
96992202 TTCACTACAA
* **
96992212 GGGTATTTCGATAATTTTACACTATAA
1 GGGTATTTCGATAATTTTACA-AATCG
96992239 GGGTATTTCGATAATTTTACAAATCG
1 GGGTATTTCGATAATTTTACAAATCG
* *
96992265 GAGGTGTTTCGGTAATTTTACAAATCG
1 G-GGTATTTCGATAATTTTACAAATCG
96992292 AGTGTAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.06
27 44 0.94
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTCGATAATTTTACAAATCG
Found at i:96994938 original size:27 final size:27
Alignment explanation
Indices: 96994907--96995304 Score: 397
Period size: 27 Copynumber: 14.8 Consensus size: 27
96994897 GGGCTGTCAC
*
96994907 ATCGAGGGTATTTCGATAATTTTCCAA
1 ATCGAGGGTATTTCGATAATTTTACAA
96994934 ATCGAGGGTATTTC-AGTAATTTTACAA
1 ATCGAGGGTATTTCGA-TAATTTTACAA
* * *
96994961 ATTGAAGGTGTTTC-AGTAATTTTACAA
1 ATCGAGGGTATTTCGA-TAATTTTACAA
* * *
96994988 ATCGAGGGTGTTTTGATAATTTTATAA
1 ATCGAGGGTATTTCGATAATTTTACAA
* *
96995015 ATCGAGGGTGTTTC-AGTAATTTCACAA
1 ATCGAGGGTATTTCGA-TAATTTTACAA
* *
96995042 AT-AAGGGGTATTTTGATAATTTTACAA
1 ATCGA-GGGTATTTCGATAATTTTACAA
* *
96995069 ATAGAGGGTGTTTCGATAATTTTACAA
1 ATCGAGGGTATTTCGATAATTTTACAA
* *
96995096 ATCGAGGGTGTTTCGGTAATTTTACAA
1 ATCGAGGGTATTTCGATAATTTTACAA
* * *
96995123 ATCAAGGGTGTTTCGATAATTTCACAA
1 ATCGAGGGTATTTCGATAATTTTACAA
*
96995150 AT-TAGGGGTATTTCGATAATTTTACAA
1 ATCGA-GGGTATTTCGATAATTTTACAA
* * *
96995177 AT-TACGGGTAATTC-AGTAATTTCAC-A
1 ATCGA-GGGTATTTCGA-TAATTTTACAA
96995203 ATCGAGGGTATTTC-AGTAATTTTACAA
1 ATCGAGGGTATTTCGA-TAATTTTACAA
*
96995230 ATCGAGAGTATTTCGATAATTTTACAA
1 ATCGAGGGTATTTCGATAATTTTACAA
*
96995257 ATCG-GGGTACTTCGATAATTTTACAA
1 ATCGAGGGTATTTCGATAATTTTACAA
*
96995283 A-CAGGGGGTATTTC-AGTAATTT
1 ATC-GAGGGTATTTCGA-TAATTT
96995305 CTCTTTACTA
Statistics
Matches: 321, Mismatches: 36, Indels: 28
0.83 0.09 0.07
Matches are distributed among these distances:
25 1 0.00
26 49 0.15
27 267 0.83
28 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
ATCGAGGGTATTTCGATAATTTTACAA
Found at i:96995411 original size:30 final size:30
Alignment explanation
Indices: 96995375--96995434 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
96995365 CAACAGATAC
*
96995375 TATGCACCAGTTAGGATTCCAGAGAAGAGG
1 TATGCACCAGGTAGGATTCCAGAGAAGAGG
96995405 TATGCACCAGGTAGGATTCCAGAGAAGAGG
1 TATGCACCAGGTAGGATTCCAGAGAAGAGG
96995435 AGGTGAGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.18
Consensus pattern (30 bp):
TATGCACCAGGTAGGATTCCAGAGAAGAGG
Found at i:96995684 original size:28 final size:28
Alignment explanation
Indices: 96995651--96995742 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
96995641 TGGCCCCTTT
* * *
96995651 AGGCCCAATCTCGTTCACATGGCCCGTC
1 AGGCCCAATCACATTCACATGGCCCATC
*
96995679 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * * *
96995707 AGGCCCATTCAGATTCATATCGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
96995735 AGGCCCAA
1 AGGCCCAA
96995743 CTACTTCCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.25, C:0.37, G:0.17, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:97004251 original size:2 final size:2
Alignment explanation
Indices: 97004244--97004275 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
97004234 TCACCAGAAC
97004244 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97004276 GTGGCGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97007194 original size:27 final size:27
Alignment explanation
Indices: 97007146--97007237 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
97007136 GGGCAAAATA
*
97007146 ATCATTTTACCCTAC-AGAGGTATGTCG
1 ATCATTTTACACTACAAG-GGTATGTCG
* * *
97007173 GTCATTTTACACTACAAGGGTATTTTG
1 ATCATTTTACACTACAAGGGTATGTCG
* * *
97007200 ATAATTTTACACTACAAGGGTATTTCA
1 ATCATTTTACACTACAAGGGTATGTCG
*
97007227 ATAATTTTACA
1 ATCATTTTACA
97007238 AATTAGGGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (27 bp):
ATCATTTTACACTACAAGGGTATGTCG
Found at i:97007252 original size:27 final size:26
Alignment explanation
Indices: 97007189--97007664 Score: 334
Period size: 27 Copynumber: 17.7 Consensus size: 26
97007179 TTACACTACA
* * **
97007189 AGGGTATTTTGATAATTTTACACTACA
1 AGGGTATTTCGATAATTTTACA-AATT
*
97007216 AGGGTATTTCAATAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAATT
* *
97007242 AGGGTTGTTTCGATAATTTTACAAATCG
1 AGGG-TATTTCGATAATTTTACAAAT-T
* * *
97007270 ATGGTATTTCGATAATTTGACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-T
*
97007297 AGGGTATTTC-AGTAACTTTACAAATT
1 AGGGTATTTCGA-TAATTTTACAAATT
* * * * *
97007323 GAGGGTGTTTTGGTAATTTTATAAATCG
1 -AGGGTATTTCGATAATTTTACAAAT-T
* * *
97007351 AGTGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-T
* * *
97007378 AGGGTGTTTC-AGTAATTTCACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAAT-T
* * *
97007405 GGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-T
* **
97007432 AGGGTGTTTCGATAATTTTACAAAACG
1 AGGGTATTTCGATAATTTTAC-AAATT
* *
97007459 AGGGTGTTTCGGTAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAATT
* * *
97007485 AAGGGTGTTTCAATAATTTCACAAATT
1 -AGGGTATTTCGATAATTTTACAAATT
97007512 AAGGGTATTTC-AGTAATTTTACAAATT
1 -AGGGTATTTCGA-TAATTTTACAAATT
* * *
97007539 AAGGGTAATTC-AGTAATTTCAC-AATCG
1 -AGGGTATTTCGA-TAATTTTACAAAT-T
97007566 AGGGTATTTCGATAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAATT
* * *
97007592 GGGGGTATTTTGATAATTTTACAAATCG
1 -AGGGTATTTCGATAATTTTACAAAT-T
* * *
97007620 AGGGTACTTCGGTAATTTTACAAACT
1 AGGGTATTTCGATAATTTTACAAATT
97007646 AGGGGTATTTC-AGTAATTT
1 A-GGGTATTTCGA-TAATTT
97007665 CTCTTTATTA
Statistics
Matches: 371, Mismatches: 60, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
26 32 0.09
27 332 0.89
28 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATT
Found at i:97007257 original size:54 final size:53
Alignment explanation
Indices: 97007189--97007665 Score: 388
Period size: 54 Copynumber: 8.9 Consensus size: 53
97007179 TTACACTACA
* * * * * *
97007189 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTGTTTCAATAATTTCACAAATG
* * * * *
97007242 AGGGTTGTTTCGATAATTTTACAAATCGATGGTATTTCGATAATTTGACAAATCG
1 AGGG-TATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAAT-G
* * *** * *
97007297 AGGGTATTTC-AGTAACTTTACAAATTGAGGGTGTTTTGGTAATTTTATAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAAT-G
* * *
97007351 AGTGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAAT-G
* * * * *
97007405 GGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAAACG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCAC-AAATG
* * ** *
97007459 AGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTCAATAATTTCACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAA-TG
** ** *
97007513 AGGGTATTTC-AGTAATTTTACAAATTAAGGGTAATTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAAT-G
* * * ** *
97007566 AGGGTATTTCGATAATTTTACAAATTGGGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAAT-G
* * * * *
97007620 AGGGTACTTCGGTAATTTTACAAA-CTAGGGGTATTTCAGTAATTTC
1 AGGGTATTTCGATAATTTTACAAATCGA-GGGTGTTTCAATAATTTC
97007666 TCTTTATTAT
Statistics
Matches: 347, Mismatches: 65, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.00
53 49 0.14
54 287 0.83
55 10 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCACAAATG
Found at i:97007276 original size:81 final size:80
Alignment explanation
Indices: 97007189--97007649 Score: 496
Period size: 81 Copynumber: 5.7 Consensus size: 80
97007179 TTACACTACA
* * * *
97007189 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATTAGGGTTGTTTC
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCAGTAATTTTACAAATTAGGG-TGTTTC
97007253 GATAATTTTACAAATCG
64 GATAATTTTACAAATCG
* * * *
97007270 ATGGTATTTCGATAATTTGACAAATCGAGGGTATTTCAGTAACTTTACAAATTGAGGGTGTTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT-AGGGTGTTTCG
* *
97007335 GTAATTTTATAAATCG
65 ATAATTTTACAAATCG
* * * * ** * *
97007351 AGTGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAT-TAGGGTGTTTCG
97007416 ATAATTTTACAAATCG
65 ATAATTTTACAAATCG
* * * * *
97007432 AGGGTGTTTCGATAATTTTACAAAACGAGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT-AGGGTGTTTCG
* **
97007497 ATAATTTCACAAATTA
65 ATAATTTTACAAATCG
** * * * *
97007513 AGGGTATTTC-AGTAATTTTACAAATTAAGGGTAATTCAGTAATTTCAC-AATCGAGGGTATTTC
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAT-TAGGGTGTTTC
*
97007576 GATAATTTTACAAATTG
64 GATAATTTTACAAATCG
* * * * *
97007593 GGGGTATTTTGATAATTTTACAAATCGAGGGTACTTCGGTAATTTTACAAACTAGGG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGG
97007650 GTATTTCAGT
Statistics
Matches: 316, Mismatches: 56, Indels: 17
0.81 0.14 0.04
Matches are distributed among these distances:
80 70 0.22
81 240 0.76
82 6 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGGTGTTTCGA
TAATTTTACAAATCG
Found at i:97007775 original size:30 final size:30
Alignment explanation
Indices: 97007735--97007794 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97007725 GAACGGATAC
97007735 TATGCACCAGGTAGGATTCCAAAGAAGAGG
1 TATGCACCAGGTAGGATTCCAAAGAAGAGG
* * *
97007765 TATGCTCCAGGTAGGATTCCAGATAAGAGG
1 TATGCACCAGGTAGGATTCCAAAGAAGAGG
97007795 AGGTGAGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (30 bp):
TATGCACCAGGTAGGATTCCAAAGAAGAGG
Found at i:97008086 original size:28 final size:28
Alignment explanation
Indices: 97008015--97008134 Score: 141
Period size: 28 Copynumber: 4.3 Consensus size: 28
97008005 TGGCCCCTTT
* * * * *
97008015 AGGCCCAATCTCGTTCACATGACCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
*
97008043 AGGCCCAATCGCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * **
97008071 AGGCCCATTCAAATTCATATGGCTTATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
97008099 AGGCCCAATCACATTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
97008127 AGGCCCAA
1 AGGCCCAA
97008135 CTACTTCCCA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 79 1.00
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:97010985 original size:27 final size:27
Alignment explanation
Indices: 97010944--97011014 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
97010934 CCACAGAGGT
* * *
97010944 ATGTCGATCACTTTACATTACAAGGGC
1 ATGTCGATAATTTTACACTACAAGGGC
* * * *
97010971 ATTTTGATAATTTTACACTACAATGGT
1 ATGTCGATAATTTTACACTACAAGGGC
97010998 ATGTCGATAATTTTACA
1 ATGTCGATAATTTTACA
97011015 AATTGAGGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (27 bp):
ATGTCGATAATTTTACACTACAAGGGC
Found at i:97011035 original size:27 final size:27
Alignment explanation
Indices: 97010995--97011468 Score: 495
Period size: 27 Copynumber: 17.6 Consensus size: 27
97010985 ACACTACAAT
* * *
97010995 GGTATGTCGATAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
97011022 GGTGTTTCGGTAATTTTACAAACCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
**
97011049 GGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
97011076 GGTATTTCGATAATTTTACAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
97011103 GGTGTTTCAGTAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
97011130 GGTGTTTCAGTAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * * *
97011157 GGTGTTTCGGTAATTTCATAAATCAAT
1 GGTATTTCGGTAATTTTACAAATCGAG
*
97011184 GGTACTAT-GGTAATTTTACAAATCGAG
1 GGTA-TTTCGGTAATTTTACAAATCGAG
*
97011211 GGTATTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * **
97011238 GGTGTTTTGGCGATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
97011265 GGTGTTTCGATAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
97011292 GGTGTTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** * *
97011319 GGTATTTTAGTAATTTCAC-AATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** * *
97011345 GGTATTTCAATAATTTTACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
97011372 GGTATTTCGGTAATTTTACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
97011399 GGTATTTCGGTAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* ** *
97011426 GGTACTTCAATAATTTTACAAAT-TAGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
97011453 GGTATTTCGGTAATTT
1 GGTATTTCGGTAATTT
97011469 CTCTTTATTA
Statistics
Matches: 381, Mismatches: 62, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
26 25 0.07
27 354 0.93
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:97014759 original size:27 final size:27
Alignment explanation
Indices: 97014729--97015176 Score: 444
Period size: 27 Copynumber: 16.7 Consensus size: 27
97014719 TTACATTACA
* * *
97014729 AGGGCATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
97014756 AGGGTGTTTCGATAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
97014783 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
97014810 AGGGTATTTCGATAATTTTGCAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
97014837 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
97014864 AGGGTGTTTTGGTAATTTTAAAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
97014891 AGGGTGTTTTGGTAATTTCATAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
97014918 AGGGTACTAT-GGTAATTTTACAAATTG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* * *
97014945 AGGGTGTTT-TAGCAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
97014972 AGGGTGTGTCGATAATTTTAAAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
97014999 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
97015026 AGGGTATTT-TAGTAATTTCAC-AATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
97015052 AGGGTATTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
97015079 GGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
97015106 -GGGTATTTCGATAATTTTAAAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
97015132 AGGGTACTTCGATAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
*
97015158 AGGGGTATTTCGGTAATTT
1 A-GGGTATTTCGATAATTT
97015177 CTCTTTATTA
Statistics
Matches: 359, Mismatches: 51, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
26 52 0.14
27 303 0.84
28 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:97015530 original size:28 final size:28
Alignment explanation
Indices: 97015495--97015556 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
97015485 GCCCCTTTAG
* *
97015495 GCCCAATCTCGTTCACATGGCCCATCAA
1 GCCCAATCACATTCACATGGCCCATCAA
* * *
97015523 GCCCAATCACATTCATATGGCCCATTAG
1 GCCCAATCACATTCACATGGCCCATCAA
97015551 GCCCAA
1 GCCCAA
97015557 CTACTTCTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.37, G:0.15, T:0.21
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAA
Found at i:97017917 original size:29 final size:29
Alignment explanation
Indices: 97017884--97017951 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
97017874 GACCTAGCAT
97017884 ACGGGCGTGTATAGCCATTTTTAGGGAAC
1 ACGGGCGTGTATAGCCATTTTTAGGGAAC
*
97017913 ACGGGCGTGTATAGCCATTTTTAGGGCAC
1 ACGGGCGTGTATAGCCATTTTTAGGGAAC
*
97017942 ACGGGTGTGT
1 ACGGGCGTGT
97017952 GTATTGGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.28
Consensus pattern (29 bp):
ACGGGCGTGTATAGCCATTTTTAGGGAAC
Found at i:97024684 original size:39 final size:39
Alignment explanation
Indices: 97024600--97024749 Score: 246
Period size: 39 Copynumber: 3.8 Consensus size: 39
97024590 TATGGTAGCC
* * *
97024600 CGCACAAATGCCTTCGGGACTTAACACGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
97024640 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
97024679 TGCACAATTGCCTTCGGGCTTAGCTCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
97024718 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
97024750 TACCCGAACA
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 86 0.83
40 17 0.17
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:97026833 original size:16 final size:16
Alignment explanation
Indices: 97026812--97026852 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
97026802 ATCGGCAAAA
97026812 GCCGAAAAGCTGAAAT
1 GCCGAAAAGCTGAAAT
*
97026828 GCCGAAAAGCTGGAAT
1 GCCGAAAAGCTGAAAT
97026844 GCCGAAAAG
1 GCCGAAAAG
97026853 TCGGCATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.41, C:0.20, G:0.29, T:0.10
Consensus pattern (16 bp):
GCCGAAAAGCTGAAAT
Found at i:97027532 original size:20 final size:20
Alignment explanation
Indices: 97027495--97027539 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
97027485 CTGTTTTGTT
97027495 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* * *
97027514 ATGGGCCCAATTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
97027534 ATGGGC
1 ATGGGC
97027540 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:97027653 original size:59 final size:60
Alignment explanation
Indices: 97027529--97027669 Score: 155
Period size: 59 Copynumber: 2.4 Consensus size: 60
97027519 CCCAATTGTG
* * *
97027529 TTGATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTATGGAAAAGATTGATA
1 TTGATATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTATGGAAAAGATTAATA
* ***
97027589 CTGATATGGGCTAGGCCCAGTAT-TCTCTGA-TACTGT-A-AGGGCTATGGCCCAGATTAATA
1 TTGATATGGGCTAGGCCCAGTATATCTC-GACT--TGTAATAGGGCTATGGAAAAGATTAATA
97027648 TTGATATGGGCTAAGGCCCAGT
1 TTGATATGGGCT-AGGCCCAGT
97027670 TAACTCTGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
59 34 0.49
60 32 0.46
61 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (60 bp):
TTGATATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTATGGAAAAGATTAATA
Found at i:97029524 original size:49 final size:49
Alignment explanation
Indices: 97029452--97029645 Score: 176
Period size: 49 Copynumber: 3.9 Consensus size: 49
97029442 GCCGAAGCTA
* * *
97029452 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * * *
97029501 TCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * ** *
97029551 TCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
97029599 TTTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 -TCT-G-GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
97029646 TCACAATAGA
Statistics
Matches: 115, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 39 0.34
50 38 0.33
51 35 0.30
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:97035545 original size:11 final size:11
Alignment explanation
Indices: 97035529--97035554 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97035519 CGAAGCCCAC
97035529 ATCACAATAAT
1 ATCACAATAAT
97035540 ATCACAATAAT
1 ATCACAATAAT
97035551 ATCA
1 ATCA
97035555 TACACGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:97036072 original size:27 final size:27
Alignment explanation
Indices: 97036055--97036476 Score: 456
Period size: 27 Copynumber: 15.7 Consensus size: 27
97036045 TTACATTATA
* * *
97036055 AGGGTATTTTGGTAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
*
97036082 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
97036109 GGGGTGTTTCAGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
97036136 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
97036163 AGGGTATTTCGATAATTTTACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
*
97036189 ATGGGTGTTTCGGTAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
97036217 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
97036244 AGGGTGTTTTGGCAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
97036271 AGGGTGTTTCGATAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
97036298 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
97036325 AGGGTATTTTAGTAATTTCAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
97036351 AAGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
97036378 GGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
97036405 GGGGTATTTCGGTAATTTTAAAAATAG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
97036432 AGGGTACTTCGATAATTTTACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
97036458 AGGGGTATTTCGGTAATTT
1 A-GGGTATTTCGGTAATTT
97036477 CTCTTTATTA
Statistics
Matches: 340, Mismatches: 50, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 24 0.07
27 313 0.92
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:97047854 original size:93 final size:93
Alignment explanation
Indices: 97047742--97047912 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
97047732 GCCCATAAGT
* *
97047742 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97047807 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
97047835 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
97047900 CGGGTTCGGATGC
66 CGAGTTCGGATGC
97047913 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97047909 original size:46 final size:46
Alignment explanation
Indices: 97047734--97047914 Score: 215
Period size: 46 Copynumber: 3.9 Consensus size: 46
97047724 TGTAACCCGC
* * *
97047734 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97047780 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97047830 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
97047873 CCATAAGTGAACTCGGACTCAACTCGACGGGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
97047915 AACCATCCTA
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97050326 original size:30 final size:30
Alignment explanation
Indices: 97050282--97050370 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
97050272 CAAAGATAAC
*
97050282 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
97050311 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
97050341 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
97050371 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:97050330 original size:15 final size:14
Alignment explanation
Indices: 97050282--97050364 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
97050272 CAAAGATAAC
*
97050282 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
97050296 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
97050311 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
97050326 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
97050341 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
97050356 AAGAAACCC
1 AAGAAACCC
97050365 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:97050370 original size:15 final size:15
Alignment explanation
Indices: 97050293--97050370 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
97050283 AGAAAACCGA
97050293 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
97050308 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
97050322 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97050337 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97050353 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97050368 ATA
1 ATA
97050371 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97053429 original size:93 final size:94
Alignment explanation
Indices: 97053317--97053488 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 94
97053307 GCCCATAAGT
* *
97053317 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97053382 CGA-GTTCGGATGCCTAGTTACATCTCAC
66 CGAGGTTCGGATGCCTAGTTACATCTCAC
*
97053410 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97053475 CGAGGTTCGGATGC
66 CGAGGTTCGGATGC
97053489 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 65 0.87
94 10 0.13
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGGTTCGGATGCCTAGTTACATCTCAC
Found at i:97053504 original size:47 final size:46
Alignment explanation
Indices: 97053309--97053490 Score: 226
Period size: 46 Copynumber: 3.9 Consensus size: 46
97053299 TGTAACCCGC
* * *
97053309 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97053355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97053405 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
97053448 CCATAAGTGAACTCGGACTCAACTCAACGAGGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGA-GTTCGGACGCTC
97053491 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.53
47 43 0.37
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97057557 original size:49 final size:49
Alignment explanation
Indices: 97057497--97057804 Score: 541
Period size: 49 Copynumber: 6.3 Consensus size: 49
97057487 GTATGAGATA
*
97057497 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
97057546 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
97057595 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
97057646 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
97057695 TAT-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
97057743 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
97057790 TATAAATGTGATAAG
1 TATATATGTGATAAG
97057805 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
47 16 0.06
48 46 0.18
49 139 0.56
51 49 0.20
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:97057606 original size:100 final size:100
Alignment explanation
Indices: 97057495--97057804 Score: 544
Period size: 100 Copynumber: 3.2 Consensus size: 100
97057485 TTGTATGAGA
*
97057495 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAAGTGTGTATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
97057560 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
97057595 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
*
97057660 GGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
97057695 --TAT-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
97057757 GGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
97057790 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
97057805 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 4, Indels: 10
0.94 0.02 0.05
Matches are distributed among these distances:
95 3 0.01
96 10 0.05
97 89 0.44
98 3 0.01
100 98 0.48
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (100 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:97060823 original size:93 final size:93
Alignment explanation
Indices: 97060711--97060881 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97060701 GCCCATAAGT
* *
97060711 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97060776 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97060804 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97060869 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97060882 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97060897 original size:46 final size:46
Alignment explanation
Indices: 97060703--97060883 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
97060693 TGTAACCCGC
* * *
97060703 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97060749 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97060799 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
97060842 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
97060884 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97063257 original size:14 final size:14
Alignment explanation
Indices: 97063238--97063286 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
97063228 CAAAGATAAC
97063238 AAGAAAACCGAATA
1 AAGAAAACCGAATA
* *
97063252 AAGAAATCCAAGATA
1 AAGAAAACCGA-ATA
* *
97063267 GAGAAACCCGAATA
1 AAGAAAACCGAATA
97063281 AAGAAA
1 AAGAAA
97063287 TCCAGAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.61, C:0.14, G:0.16, T:0.08
Consensus pattern (14 bp):
AAGAAAACCGAATA
Found at i:97063297 original size:14 final size:14
Alignment explanation
Indices: 97063238--97063315 Score: 52
Period size: 14 Copynumber: 5.4 Consensus size: 14
97063228 CAAAGATAAC
*
97063238 AAGAAAACC-GAATA
1 AAGAAATCCAGAA-A
*
97063252 AAGAAATCCAAGATA
1 AAGAAATCC-AGAAA
* *
97063267 GAGAAA-CCCGAATA
1 AAGAAATCCAGAA-A
97063281 AAGAAATCCAGAAA
1 AAGAAATCCAGAAA
* *
97063295 AAGAGATCCAGGATA
1 AAGAAATCCA-GAAA
97063310 AAGAAA
1 AAGAAA
97063316 CCCAAGATAC
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
13 2 0.04
14 26 0.53
15 19 0.39
16 2 0.04
ACGTcount: A:0.59, C:0.14, G:0.18, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAGAAA
Found at i:97063324 original size:15 final size:15
Alignment explanation
Indices: 97063249--97063324 Score: 75
Period size: 15 Copynumber: 5.2 Consensus size: 15
97063239 AGAAAACCGA
97063249 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
97063264 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
97063278 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* * *
97063292 AAAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
97063307 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97063322 ATA
1 ATA
97063325 CGATACTATG
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
13 1 0.02
14 20 0.43
15 26 0.55
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97066379 original size:93 final size:93
Alignment explanation
Indices: 97066267--97066437 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97066257 GCCCATAAGT
* *
97066267 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97066332 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97066360 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97066425 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97066438 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97066453 original size:46 final size:46
Alignment explanation
Indices: 97066259--97066439 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
97066249 TGTAACCCGC
* * *
97066259 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97066305 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97066355 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
97066398 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
97066440 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97070010 original size:40 final size:40
Alignment explanation
Indices: 97069960--97070159 Score: 122
Period size: 40 Copynumber: 5.0 Consensus size: 40
97069950 TTTAACCAGA
* * *
97069960 TATAGCGATTCGCTCGATTGTCTTCGGGACA-TAGCCCGGT
1 TATAGCGATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGT
*
97070000 TATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGAT
1 TATAGCGATTCGCACAATTGCCTTCGGGAATTAGCCCGG-T
** * * * * *
97070041 T-TAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGT
1 TATAGCGATTCGCACAATTGCCTTCGGGAATTAGCCCGGT
* * ** * *
97070080 TTTGGTAACTCGCACAAATGCCTTCGGGAATT-GACCCGGAT
1 TATAGCGATTCGCACAATTGCCTTCGGGAATTAG-CCCGG-T
* ** *
97070121 T-TAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 TATAG-CGA-TTCGCACAATTGCCTTCGGGAATTAGCCCGG
97070160 ATATCATTCG
Statistics
Matches: 132, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.02
40 99 0.75
41 29 0.22
42 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (40 bp):
TATAGCGATTCGCACAATTGCCTTCGGGAATTAGCCCGGT
Found at i:97070080 original size:80 final size:81
Alignment explanation
Indices: 97069981--97070159 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
97069971 GCTCGATTGT
* * * *
97069981 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* * *
97070045 TAAC-TCGCATAAATGC
65 TAACTTAGCACAAAAGC
* * *
97070061 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
97070126 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
97070142 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
97070160 ATATCATTCG
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 58 0.68
81 27 0.32
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:97070148 original size:41 final size:39
Alignment explanation
Indices: 97070009--97070161 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 39
97069999 TTATAGTGAT
*
97070009 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
97070049 TCGCATAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
*
97070089 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
97070129 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGAT
97070162 ATCATTCGAA
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
40 68 0.71
41 28 0.29
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:97072524 original size:22 final size:22
Alignment explanation
Indices: 97072499--97072542 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
97072489 AATTATCAAC
*
97072499 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
*
97072521 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAATTAATTTT
97072543 TATTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:97079805 original size:93 final size:93
Alignment explanation
Indices: 97079693--97079863 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97079683 GCCCATAAGT
* *
97079693 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97079758 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97079786 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97079851 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97079864 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97079879 original size:46 final size:46
Alignment explanation
Indices: 97079685--97079865 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
97079675 TGTAACCCGC
* * *
97079685 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97079731 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97079781 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
97079824 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
97079866 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97082269 original size:30 final size:30
Alignment explanation
Indices: 97082225--97082313 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
97082215 CAAAGATAAC
*
97082225 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
97082254 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
97082284 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
97082314 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:97082273 original size:15 final size:14
Alignment explanation
Indices: 97082225--97082307 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
97082215 CAAAGATAAC
*
97082225 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
97082239 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
97082254 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
97082269 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
97082284 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
97082299 AAGAAACCC
1 AAGAAACCC
97082308 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:97082313 original size:15 final size:15
Alignment explanation
Indices: 97082236--97082313 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
97082226 AGAAAACCGA
97082236 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
97082251 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
97082265 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97082280 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97082296 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97082311 ATA
1 ATA
97082314 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97085372 original size:92 final size:91
Alignment explanation
Indices: 97085261--97085428 Score: 284
Period size: 92 Copynumber: 1.8 Consensus size: 91
97085251 GCCCATAAGT
* *
97085261 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC-A
97085326 CGAGTTC-GATGCCTAGTTACATCTCAC
65 CG-GTTCGGATGCCTAGTTACATCTCAC
*
97085353 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAC
97085418 GGTTCGGATGC
66 GGTTCGGATGC
97085429 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 4 0.06
91 8 0.11
92 60 0.83
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAC
GGTTCGGATGCCTAGTTACATCTCAC
Found at i:97085438 original size:46 final size:46
Alignment explanation
Indices: 97085253--97085430 Score: 206
Period size: 46 Copynumber: 3.9 Consensus size: 46
97085243 TGTAACCCGC
* * *
97085253 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97085299 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97085348 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
97085391 CCATAAGTGAACTCGGACTCAACTC-ACG-GTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
97085431 AACCATCCTA
Statistics
Matches: 112, Mismatches: 12, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 3 0.03
44 12 0.11
45 7 0.06
46 81 0.72
47 5 0.04
48 1 0.01
49 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97087305 original size:27 final size:27
Alignment explanation
Indices: 97087275--97087628 Score: 333
Period size: 27 Copynumber: 13.1 Consensus size: 27
97087265 AAGTACTCCC
97087275 GATTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
*
97087302 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** * *
97087329 GATTTTTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
97087356 GATTTACAGAATTACCG-TTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* ** *
97087381 CAGTTTACAGAATTACTATCTTACCC-T
1 GA-TTTACAGAATTACCGTTTTACCCTT
* ** *
97087408 CAGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
**
97087436 GATTTACAGAATTATTGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
97087462 CAGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
*
97087490 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** * *
97087517 GATTTGTAAAATTACCATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
97087544 GATTTACAAAATTACTAG-TTTACCC-T
1 GATTTACAGAATTAC-CGTTTTACCCTT
* * * * *
97087570 CATTGTACAAAATTATCGTTTTACTCTC
1 GATT-TACAGAATTACCGTTTTACCCTT
* *
97087598 GATTCATAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
97087625 GATT
1 GATT
97087629 GTGAAATTAC
Statistics
Matches: 274, Mismatches: 44, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.00
26 26 0.09
27 242 0.88
28 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:97087365 original size:81 final size:80
Alignment explanation
Indices: 97087274--97087628 Score: 421
Period size: 81 Copynumber: 4.4 Consensus size: 80
97087264 AAAGTACTCC
* **
97087274 CGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTTTAAA
1 CGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTC-ATTTACAAA
97087339 ATTACCGTTTTACCCT
65 ATTACCGTTTTACCCT
* * * *
97087355 CGATTTACAGAATTACCG-TTTACCC-TCAGTTTACAGAATTACTATCTTACCCTCAGTTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGTTTTACCCTCA-TTTACAA
**
97087418 AATTACTATTTTACCCT
64 AATTACCGTTTTACCCT
** * *
97087435 CGATTTACAGAATTATTGTTTTACCC-TCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGTTTTACCCTC-ATTTACAA
97087499 AATTACCGTTTTACCCT
64 AATTACCGTTTTACCCT
** * * *
97087516 CGATTTGTAAAATTACCATTTTACCCTTGATTTACAAAATTACTAG-TTTACCCTCATTGTACAA
1 CGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACT-GTTTTACCCTCATT-TACAA
* *
97087580 AATTATCGTTTTACTCT
64 AATTACCGTTTTACCCT
* *
97087597 CGATTCATAGAATTACCGTTTTACCCTTGATT
1 CGATTTACAGAATTACCGTTTTACCCTTGATT
97087629 GTGAAATTAC
Statistics
Matches: 237, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.01
80 67 0.28
81 163 0.69
82 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (80 bp):
CGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCATTTACAAAA
TTACCGTTTTACCCT
Found at i:97087663 original size:27 final size:27
Alignment explanation
Indices: 97087633--97087810 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
97087623 TTGATTGTGA
*
97087633 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
97087660 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* *
97087687 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
** *
97087714 AATTACCAAAATACTCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
97087741 AATTA-TCGAAATACCCTTATAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* * *
97087768 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
97087795 AATTACCGAGATACCC
1 AATTACTGAAATACCC
97087811 TTGTGGTGTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 125 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:97087698 original size:54 final size:54
Alignment explanation
Indices: 97087633--97087812 Score: 245
Period size: 54 Copynumber: 3.3 Consensus size: 54
97087623 TTGATTGTGA
* * **
97087633 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
97087687 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACTCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* *
97087741 AATTA-TCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* *
97087795 AATTACCGAGATACCCTT
1 AATTACTGAAATACCCTT
97087813 GTGGTGTAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 109 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:97087738 original size:81 final size:81
Alignment explanation
Indices: 97087641--97087810 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
97087631 GAAATTACTG
* * * * *
97087641 AAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTA
1 AAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
97087706 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* * *
97087722 AAATACTCCTATAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
* *
97087787 TAGGGTAGAATTACCG
66 TAGGATAGAATTACCA
*
97087803 AGATACCC
1 AAATACCC
97087811 TTGTGGTGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
AAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:97087826 original size:81 final size:80
Alignment explanation
Indices: 97087633--97087826 Score: 228
Period size: 81 Copynumber: 2.4 Consensus size: 80
97087623 TTGATTGTGA
* * * * *
97087633 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCTTGT-GGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
97087698 TACCCTTATAGGATAG
65 TACCCCTATAGGATAG
* * *
97087714 AATTACCAAAATACTCCTAT-AGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAA
1 AATTACCGAAATAC-CCT-TGTGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAA
* *
97087778 ATACCCCTGTAGGGTAG
64 ATACCCCTATAGGATAG
* *
97087795 AATTACCGAGATACCCTTGTGGTGTAAAATTA
1 AATTACCGAAATACCCTTGTGG-GTAGAATTA
97087827 CCATTTTGCC
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.01
80 5 0.05
81 85 0.90
82 2 0.02
83 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (80 bp):
AATTACCGAAATACCCTTGTGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAAT
ACCCCTATAGGATAG
Found at i:97087838 original size:27 final size:27
Alignment explanation
Indices: 97087808--97087869 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
97087798 TACCGAGATA
*
97087808 CCCTTGTGGTGTAAAATTACCATTTTG
1 CCCTTGTGGTGTAAAATGACCATTTTG
* * **
97087835 CCCTAG-GGTGTTAAATGACTGTTTTG
1 CCCTTGTGGTGTAAAATGACCATTTTG
97087861 CCCTTGTGG
1 CCCTTGTGG
97087870 GCAAGTGACT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.39
Consensus pattern (27 bp):
CCCTTGTGGTGTAAAATGACCATTTTG
Done.