Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 312 of 425
Found at i:97088063 original size:27 final size:26
Alignment explanation
Indices: 97088025--97088107 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
97088015 CGGAGGAAGC
*
97088025 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
97088052 GTTCTGGTGGCTCTGCCGCAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
97088078 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
97088105 GTT
1 GTT
97088108 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:97088227 original size:22 final size:22
Alignment explanation
Indices: 97088202--97088253 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
97088192 TTAATAGCTC
97088202 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
97088224 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
97088246 CGTGCCAA
1 TGTGCCAA
97088254 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:97088440 original size:27 final size:27
Alignment explanation
Indices: 97088426--97088491 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
97088416 TTTGCCATAT
97088426 TATCTG-ATCCTGGTGGCTCTGCCACAA
1 TATCTGTAT-CTGGTGGCTCTGCCACAA
* * * *
97088453 TATCTGTATCTGGTGACACTGTCACGA
1 TATCTGTATCTGGTGGCTCTGCCACAA
97088480 TATCTGT-TCTGG
1 TATCTGTATCTGG
97088492 CAGCCATGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.15
27 27 0.79
28 2 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGCCACAA
Found at i:97088645 original size:6 final size:6
Alignment explanation
Indices: 97088634--97088819 Score: 213
Period size: 6 Copynumber: 30.8 Consensus size: 6
97088624 TTGTCACGTA
* * *
97088634 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
*
97088682 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTCTG -TCATCTA
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
97088731 ATTCTG ATTCTG ATTCTG ATTCTG GTTCTG -TTACTA ATAT-TG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
97088779 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCT
97088820 CATTTTGGTT
Statistics
Matches: 156, Mismatches: 11, Indels: 26
0.81 0.06 0.13
Matches are distributed among these distances:
5 10 0.06
6 135 0.87
7 9 0.06
8 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97088769 original size:97 final size:97
Alignment explanation
Indices: 97088609--97088819 Score: 370
Period size: 97 Copynumber: 2.2 Consensus size: 97
97088599 TTGCATTCAC
* *
97088609 ATTCTGATTCTGATTTTGTCACGTAATTCTGATTCTGGTTCTGATTCTGATTCTGTTACTAATAC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTAATAC
97088674 TGATTCTGATTCTGATTCTGTTACTGATTCTG
66 TGATTCTGATTCTGATTCTGTTACTGATTCTG
*
97088706 ATTCTGATTCTGATTCTGTCATC-TAATTCTGATTCTGATTCTGATTCTGGTTCTGTTACTAATA
1 ATTCTGATTCTGATTCTGTCA-CGTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTAATA
*
97088770 TTGATTCTGATTCTGATTCTGTTACTGATTCTG
65 CTGATTCTGATTCTGATTCTGTTACTGATTCTG
97088803 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
97088820 CATTTTGGTT
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
97 108 0.99
98 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (97 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTAATAC
TGATTCTGATTCTGATTCTGTTACTGATTCTG
Found at i:97090860 original size:27 final size:27
Alignment explanation
Indices: 97090830--97091133 Score: 348
Period size: 27 Copynumber: 11.3 Consensus size: 27
97090820 CCAAAGTACT
97090830 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
** *
97090857 CTCGATTTTTAAAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
*
97090884 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
97090911 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
* *
97090938 TTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
97090965 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
*
97090992 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
** * *
97091019 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* * *
97091046 TTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
97091073 CTC-AGTTTACAAAATTA-TCGTTTTACC
1 CTCGA-TTTACAGAATTACT-GTTTTACC
*
97091100 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
97091127 CTTGATT
1 CTCGATT
97091134 GTGAAATTAC
Statistics
Matches: 231, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.02
27 223 0.97
28 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACTGTTTTACC
Found at i:97090870 original size:54 final size:54
Alignment explanation
Indices: 97090801--97091133 Score: 384
Period size: 54 Copynumber: 6.2 Consensus size: 54
97090791 TACTGAAATG
* * *** * *
97090801 CCCTCGACTTGTAAAATTACCAAAGTACTCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
97090855 CCCTCGATTTTTAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
97090909 CCCTC-AGTTTACAGAATTACTATTTTACCTTCGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* *
97090963 CCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * * * *
97091017 CCCTCGATTTGTAAAATTACCGTTTTACCTTTGATTTACAGAATTACTGGTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
97091071 CCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
*
97091125 CCCTTGATT
1 CCCTCGATT
97091134 GTGAAATTAC
Statistics
Matches: 241, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.01
54 237 0.98
55 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:97090923 original size:81 final size:81
Alignment explanation
Indices: 97090835--97091133 Score: 388
Period size: 81 Copynumber: 3.7 Consensus size: 81
97090825 GTACTCTCGA
** *
97090835 TTTACAGAATTACTGTTTTACCCTCGATTTTTAAAATTATCGTTTTACCCTCGATTTACAGAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
*
97090900 ACCGTTTTACCCTCAG
66 ACTGTTTTACCCTCAG
* * * *
97090916 TTTACAGAATTACTATTTTACCTTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAAT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGA-TTTACAGAAT
*
97090980 TACTATTTTACCCTC-G
65 TACTGTTTTACCCTCAG
* ** * *
97090996 ATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCTTTGATTTACAGAAT
1 -TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT
*
97091061 TACTGGTTTACCCTCAG
65 TACTGTTTTACCCTCAG
* * *
97091078 TTTACAAAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
1 TTTACAGAATTACT-GTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
97091134 GTGAAATTAC
Statistics
Matches: 187, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.01
81 183 0.98
82 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (81 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
ACTGTTTTACCCTCAG
Found at i:97091168 original size:27 final size:27
Alignment explanation
Indices: 97091138--97091332 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
97091128 TTGATTGTGA
*
97091138 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
** * *
97091165 AATTTTTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
97091192 AATTATTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCTTGTAGGGTAG
** *
97091219 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
97091246 AATTA-TCGAAATACCCTTATAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
97091273 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
97091300 AATTACCT-AGATACCCTTGTGGGGTAA
1 AATTA-CTGAAATACCCTTGTAGGGTAG
97091327 AATTAC
1 AATTAC
97091333 CATTTTGCCC
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:97091206 original size:54 final size:54
Alignment explanation
Indices: 97091138--97091304 Score: 226
Period size: 54 Copynumber: 3.1 Consensus size: 54
97091128 TTGATTGTGA
* * * *** *
97091138 AATTACTGAAATACCCCTGTAGGGTAGAATTTTTGAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
97091192 AATTATTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
97091246 AATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCTTGTAGGGTAG
1 AATTATTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
97091300 AATTA
1 AATTA
97091305 CCTAGATACC
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (54 bp):
AATTATTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:97091239 original size:81 final size:81
Alignment explanation
Indices: 97091146--97091331 Score: 255
Period size: 81 Copynumber: 2.3 Consensus size: 81
97091136 GAAATTACTG
* * * **
97091146 AAATACCCCTGTAGGGTAGAATTTTTGAAATACCCCTATAGGGTAGAATTATTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
97091211 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* *
97091227 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
* *
97091292 TAGGGTAGAATTACCT
66 TAGGATAGAATTACCA
* * * *
97091308 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
97091332 CCATTTTGCC
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCTTA
TAGGATAGAATTACCA
Found at i:97091579 original size:27 final size:26
Alignment explanation
Indices: 97091532--97091614 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
97091522 CGGAGGAAGC
* *
97091532 GTTCTGGTGGCTATGCAACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
97091559 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
97091585 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
97091612 GTT
1 GTT
97091615 GACCGATTGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 10 0.21
27 38 0.79
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:97091736 original size:22 final size:22
Alignment explanation
Indices: 97091702--97091760 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
97091692 CCCGTTATTA
*
97091702 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * * *
97091724 ATGGCTTTATGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
97091746 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
97091761 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:97091947 original size:27 final size:27
Alignment explanation
Indices: 97091927--97091993 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
97091917 GGTGGGTTTG
*
97091927 CCACATTATCTG-ATTCTGGTGGCTCTA
1 CCACAATATCTGTATT-TGGTGGCTCTA
* *
97091954 CCACAATATCTGTATTTGGTGACTCTG
1 CCACAATATCTGTATTTGGTGGCTCTA
* *
97091981 TCACGATATCTGT
1 CCACAATATCTGT
97091994 TCTGGCAGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 31 0.91
28 3 0.09
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (27 bp):
CCACAATATCTGTATTTGGTGGCTCTA
Found at i:97092125 original size:6 final size:6
Alignment explanation
Indices: 97092116--97092320 Score: 183
Period size: 6 Copynumber: 33.8 Consensus size: 6
97092106 TTGCATTCAC
* * * * *
97092116 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTT ATTCTG -TTACTA ATACTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG ATTCTG
97092165 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATT-CTG
* *
97092213 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
97092262 -TTACTA ATAT-TA ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
97092310 ATTCTG ATTCT
1 ATTCTG ATTCT
97092321 CATTTTGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 36
0.76 0.07 0.17
Matches are distributed among these distances:
5 13 0.08
6 138 0.83
7 12 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97098558 original size:67 final size:66
Alignment explanation
Indices: 97098485--97098835 Score: 155
Period size: 67 Copynumber: 5.1 Consensus size: 66
97098475 TTGATTCATA
97098485 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTT-
97098550 GT
65 GT
* **** ** * * *
97098552 CAAAATATAAAAAACATGA-AAATTA-AT-ATTCTTTTGGAA-ATAATATAATTAATATATGAAT
1 CAAAATATTAATTGTAT-ATATTTTACCTAATT-TATT--AATATAA-ACAATT-ATAT-T-AA-
* * *
97098613 TTGATTCAT-A
57 TTAATT-TTGT
* *
97098623 CAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTT-
97098688 GT
65 GT
** * * ** * * * *
97098690 CAAAATA-TAAAAGCCATAGAAATTA-AT-ATTCTTTTGGAA-AGAATATAATTAATATATGAAT
1 CAAAATATTAATTG-TATATATTTTACCTAATT-TATT--AATATAA-ACAATT-ATAT-T-AA-
* * *
97098751 TTGATTCAT-A
57 TTAATT-TTGT
* *
97098761 CAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
97098826 AT
66 -T
97098828 CAAAATAT
1 CAAAATAT
97098836 AAAAGACATG
Statistics
Matches: 194, Mismatches: 58, Indels: 64
0.61 0.18 0.20
Matches are distributed among these distances:
65 8 0.04
66 21 0.11
67 49 0.25
68 16 0.08
69 16 0.08
70 15 0.08
71 41 0.21
72 20 0.10
73 8 0.04
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (66 bp):
CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
T
Found at i:97098614 original size:138 final size:138
Alignment explanation
Indices: 97098456--97099014 Score: 953
Period size: 138 Copynumber: 4.1 Consensus size: 138
97098446 GAGAACATAG
*
97098456 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCTAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* *
97098521 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAAACAT-GAAAATTAATATTCTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATAG-AAATTAATATTCTT
*
97098585 TTGGAAATA
130 TTGGAAAGA
97098594 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
*
97098659 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGCCATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
97098724 TGGAAAGA
131 TGGAAAGA
97098732 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* *
97098797 AATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGACAT-GAAAATTAATATTATT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATAG-AAATTAATATTCTT
97098861 TTGGAAAGA
130 TTGGAAAGA
* * *
97098870 ATATAAATAAT-TATGTATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
** * *
97098934 AATATAAGTAGTTATATTAATTAATTTTGGACAAAATATAAAAGGCATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
97098999 TGGAAAGA
131 TGGAAAGA
97099007 ATATAATT
1 ATATAATT
97099015 CCTTTTTCTA
Statistics
Matches: 400, Mismatches: 18, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
137 124 0.31
138 275 0.69
139 1 0.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
TGGAAAGA
Found at i:97107102 original size:75 final size:76
Alignment explanation
Indices: 97106973--97107112 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 76
97106963 ATTAATTTTC
* * * *
97106973 TTTTGGAAAGAATATAATTCTTTTTTTGTAACTTTTCATTTGTCTTCTATATTAATAAGGGAATA
1 TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
97107038 CTCATTTATTT
66 CTCATTTATTT
* *
97107049 TTTTGGAAAGAATATAATTC-CTTTTTCTAACTTTTCGTTTGCCTTCTCTATTAATAAAGGAATA
1 TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
97107113 ATCTTGATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
75 38 0.66
76 20 0.34
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (76 bp):
TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
CTCATTTATTT
Found at i:97108578 original size:27 final size:27
Alignment explanation
Indices: 97108548--97108605 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
97108538 ATATATCACA
97108548 TAGGAGCAATACAGTCAATTTA-CCAT
1 TAGGAGCAATACAGTCAATTTATCCAT
* * * *
97108574 GTAGGGGCATTTCAGTCATTTTATCCAT
1 -TAGGAGCAATACAGTCAATTTATCCAT
97108602 TAGG
1 TAGG
97108606 GGGTCTAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (27 bp):
TAGGAGCAATACAGTCAATTTATCCAT
Found at i:97111296 original size:13 final size:13
Alignment explanation
Indices: 97111278--97111302 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97111268 GAGATCGATT
97111278 TCAAAATTGAAAC
1 TCAAAATTGAAAC
97111291 TCAAAATTGAAA
1 TCAAAATTGAAA
97111303 GTTATGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAAAATTGAAAC
Found at i:97121043 original size:28 final size:27
Alignment explanation
Indices: 97120973--97121087 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
97120963 GGAGGAAACG
* *
97120973 TTCTAGTGGCTCTACCACAAATATCT-A
1 TTCTAGTGGCTCTGCCAC-AATATCTGT
* * *
97121000 ATCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTAGTGGCTCTGCCAC-AATATCTGT
* * *
97121028 TTCTGGTGGCTCTGCCACAATATTTAT
1 TTCTAGTGGCTCTGCCACAATATCTGT
* * *
97121055 ATCTAGTGACTCTGTCACAATATCTG-
1 TTCTAGTGGCTCTGCCACAATATCTGT
97121081 TTCTAGT
1 TTCTAGT
97121088 AGCCATGCTG
Statistics
Matches: 71, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
26 6 0.08
27 49 0.69
28 16 0.23
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (27 bp):
TTCTAGTGGCTCTGCCACAATATCTGT
Found at i:97121074 original size:55 final size:54
Alignment explanation
Indices: 97120973--97121087 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 54
97120963 GGAGGAAACG
* * *
97120973 TTCTAGTGGCTCTACCACAAATATCTAATCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTAGTGGCTCTACCACAAATATCTAATCTAGTGACTCTGCCAC-AATATCTGT
* * * *
97121028 TTCTGGTGGCTCTGCCAC-AATATTTATATCTAGTGACTCTGTCACAATATCTG-
1 TTCTAGTGGCTCTACCACAAATATCTA-ATCTAGTGACTCTGCCACAATATCTGT
97121081 TTCTAGT
1 TTCTAGT
97121088 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.12
54 15 0.29
55 30 0.59
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
TTCTAGTGGCTCTACCACAAATATCTAATCTAGTGACTCTGCCACAATATCTGT
Found at i:97125395 original size:12 final size:12
Alignment explanation
Indices: 97125378--97125404 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97125368 TTAAGGATTA
97125378 TGACTGTTCGAT
1 TGACTGTTCGAT
97125390 TGACTGTTCGAT
1 TGACTGTTCGAT
97125402 TGA
1 TGA
97125405 GTATCACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.41
Consensus pattern (12 bp):
TGACTGTTCGAT
Found at i:97127735 original size:39 final size:39
Alignment explanation
Indices: 97127663--97127806 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
97127653 TCGTTCAAAC
* *
97127663 GCCTTCGGGACTTAACCCAGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
97127703 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
* *
97127742 GCCTTCGGGCTTAGCCCGGATATCACAATTCACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
97127781 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
97127807 TCGAACATTC
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.91
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:97135667 original size:39 final size:39
Alignment explanation
Indices: 97135567--97135738 Score: 245
Period size: 39 Copynumber: 4.4 Consensus size: 39
97135557 CTTTGGGACA
* * * * * *
97135567 TAGCCCGGTTATGATAACCCGCACAAATGCCTTTGGGACT
1 TAGCCCGGATATCACAACTCGCACAATTGCCTTCGGG-CT
*
97135607 TAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
* *
97135646 TAGCCCGAATATCATAACTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
*
97135685 TAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
97135724 TAGCCCGGATATCAC
1 TAGCCCGGATATCAC
97135739 TCGAACATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 89 0.75
40 30 0.25
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
TAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
Found at i:97138389 original size:40 final size:39
Alignment explanation
Indices: 97138224--97138407 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
97138214 AAATTGAATG
* * *
97138224 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
97138264 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
97138304 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
97138344 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
97138383 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
97138408 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:97138432 original size:80 final size:81
Alignment explanation
Indices: 97138264--97138452 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
97138254 GCTGGAAATT
* * * *
97138264 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
97138329 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
97138345 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
97138408 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
97138424 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
97138453 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:97141352 original size:18 final size:18
Alignment explanation
Indices: 97141329--97141363 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97141319 TAACGCCCCA
*
97141329 ATTTTTGGGATTTTCAAG
1 ATTTTTGGAATTTTCAAG
*
97141347 ATTTTTGTAATTTTCAA
1 ATTTTTGGAATTTTCAA
97141364 TGAATTTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (18 bp):
ATTTTTGGAATTTTCAAG
Found at i:97143212 original size:28 final size:28
Alignment explanation
Indices: 97143148--97143261 Score: 137
Period size: 27 Copynumber: 4.2 Consensus size: 28
97143138 GAGGAAACGT
97143148 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * * *
97143175 TCTGGTGGCTTTACCACAAATATTTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
97143203 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
97143230 TCTGGTGACTCTGTCAC-AGTATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
97143256 TCTGGT
1 TCTGGT
97143262 AGGAATGCTG
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.08
27 54 0.72
28 15 0.20
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:97147340 original size:29 final size:29
Alignment explanation
Indices: 97147308--97147442 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
97147298 ATACCCTCCG
** * *
97147308 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
97147337 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
97147366 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
97147395 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
97147424 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
97147443 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:97147375 original size:58 final size:58
Alignment explanation
Indices: 97147254--97147443 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
97147244 TACTCTATTT
* * * *** *
97147254 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
97147312 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
97147370 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
97147428 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
97147444 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:97149958 original size:13 final size:13
Alignment explanation
Indices: 97149940--97149964 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97149930 CTCAGCAGGG
97149940 ACACGCCCGTGTA
1 ACACGCCCGTGTA
97149953 ACACGCCCGTGT
1 ACACGCCCGTGT
97149965 GCGATTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:97168351 original size:28 final size:28
Alignment explanation
Indices: 97168303--97168371 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
97168293 TTTAAAACCC
* *
97168303 TAGGGGT-ATATCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97168330 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97168358 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97168372 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97170008 original size:20 final size:20
Alignment explanation
Indices: 97169985--97170022 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97169975 CACATCCAAA
*
97169985 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97170005 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97170023 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97174635 original size:28 final size:28
Alignment explanation
Indices: 97174589--97174657 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97174579 TTTAAAACCC
*
97174589 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97174616 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97174644 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97174658 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97176289 original size:20 final size:20
Alignment explanation
Indices: 97176266--97176303 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97176256 CACATCCAAA
*
97176266 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97176286 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97176304 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97185508 original size:54 final size:53
Alignment explanation
Indices: 97185434--97185562 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
97185424 ATTACCAAAG
* * * * * *
97185434 TACCCCGATTTGTATAATTACCGTTTTATCCTCAATTTACAGAATTACCGTTT
1 TACCCCGATTTATAAAATTACCATTTTACCCTCAATATACAGAATTACCATTT
* * ** *
97185487 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATATACAGAATTACTATTT
1 TACCC-CGATTTATAAAATTACCATTTTACCCTCAATATACAGAATTACCATTT
*
97185541 TACCCCCGATTTACAAAATTAC
1 TA-CCCCGATTTATAAAATTAC
97185563 TAAAATACCT
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
53 5 0.08
54 54 0.87
55 3 0.05
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (53 bp):
TACCCCGATTTATAAAATTACCATTTTACCCTCAATATACAGAATTACCATTT
Found at i:97185563 original size:27 final size:27
Alignment explanation
Indices: 97185457--97185564 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
97185447 ATAATTACCG
* * **
97185457 TTTTATCCTCAATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAGAATTACTA
*
97185484 TTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* *
97185511 TTTTACCCTTGATATACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* *
97185538 TTTTACCCCCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
97185565 AAATACCTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:97185571 original size:27 final size:27
Alignment explanation
Indices: 97185487--97185761 Score: 153
Period size: 27 Copynumber: 10.1 Consensus size: 27
97185477 ATTACCGTTT
* ***
97185487 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * * ***
97185514 TACCCTTGATATACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *
97185541 TACCCCCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
97185568 TACCTTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
97185595 TACCCTCGA-TCAGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * * *
97185622 TACCCTAG-TTTGTAAAATTACCAGAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * **
97185648 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
97185675 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
97185702 TACCATTGATTTAAAAAATTACAAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
97185729 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAT-AAAATTACTA-AAA
97185758 TACC
1 TACC
97185762 ATTGGTTTAC
Statistics
Matches: 197, Mismatches: 43, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
26 21 0.11
27 158 0.80
28 4 0.02
29 14 0.07
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:97185667 original size:80 final size:80
Alignment explanation
Indices: 97185555--97185732 Score: 203
Period size: 80 Copynumber: 2.2 Consensus size: 80
97185545 CCCGATTTAC
* ** * *
97185555 AAAATTACTAAAATACCTTTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACTAA
1 AAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
97185620 AATACCCTAGTTTGT
66 AATACCCTAGTTTGT
* * * * **
97185635 AAAATTACCAGAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
* * **
97185700 AATACCATTGATTTAA
66 AATACCCTAG-TTTGT
*
97185716 AAAATTACAAAAATACC
1 AAAATTACCAAAATACC
97185733 CTTGACTTTC
Statistics
Matches: 80, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
80 62 0.77
81 18 0.22
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
AATACCCTAGTTTGT
Found at i:97185733 original size:54 final size:53
Alignment explanation
Indices: 97185548--97185734 Score: 187
Period size: 54 Copynumber: 3.5 Consensus size: 53
97185538 TTTTACCCCC
* * * * * *
97185548 GATTTACAAAATTACTAAAATACCTTTGGTTTATAAAATTACCAAAATACCCTC
1 GATTTATAAAATTACTAAAATACC-CTAGTTTGTAAAATTACCAAAATACCATT
* * *
97185602 GA-TCAGTAAAATTACTAAAATACCCTAGTTTGTAAAATTACCAGAATACCACT
1 GATTTA-TAAAATTACTAAAATACCCTAGTTTGTAAAATTACCAAAATACCATT
* * * ** *
97185655 GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCATT
1 GATTTATAAAATTACTAAAATACCCT-AGTTTGTAAAATTACCAAAATACCATT
* *
97185709 GATTTAAAAAATTACAAAAATACCCT
1 GATTTATAAAATTACTAAAATACCCT
97185735 TGACTTTCTA
Statistics
Matches: 106, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
53 42 0.40
54 64 0.60
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (53 bp):
GATTTATAAAATTACTAAAATACCCTAGTTTGTAAAATTACCAAAATACCATT
Found at i:97185758 original size:29 final size:27
Alignment explanation
Indices: 97185689--97185770 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
97185679 CTCAATTTGT
*
97185689 AAAATTACCAAAATACCATTGATTTAA
1 AAAATTACAAAAATACCATTGATTTAA
* *
97185716 AAAATTACAAAAATACCCTTGACTTTCTA
1 AAAATTACAAAAATACCATTGA-TTT-AA
* * *
97185745 AAAATTATAGAAATACCATTGGTTTA
1 AAAATTACAAAAATACCATTGATTTA
97185771 CATTACTGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 20 0.44
28 6 0.13
29 19 0.42
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.32
Consensus pattern (27 bp):
AAAATTACAAAAATACCATTGATTTAA
Found at i:97185795 original size:107 final size:107
Alignment explanation
Indices: 97185556--97185808 Score: 255
Period size: 107 Copynumber: 2.4 Consensus size: 107
97185546 CCGATTTACA
* * * * * *
97185556 AAATTACTAAAATACCTTTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACTAAA
1 AAATTACTGAAATACCCTTGGTTTGTAAAATTACCAAAATACCATCGATCAGAAAAATTACAAAA
* *
97185621 ATACCCTAGTTTGTAAAATTACCAGAATACCACTGGTTTGTG
66 ATACCCTACTTTCTAAAATTACCAGAATACCACTGGTTTGTG
* *** * *
97185663 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCATTGATTTA-AAAAATTACAAA
1 AAATTACTGAAATACCCTTGGTTTGTAAAATTACCAAAATACCATCGA-TCAGAAAAATTACAAA
* *
97185727 AATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGG-TT-T-
65 AATACCC-T-ACTTTCT-AAAATTACCAG-AATACCACTGGTTTGTG
* * *
97185770 ACATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 AAATTACTGAAATACCCTTGGTTTGTAAAATTACCAAAA
97185809 CACCCTTGTA
Statistics
Matches: 118, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
107 88 0.75
108 4 0.03
109 9 0.08
110 17 0.14
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (107 bp):
AAATTACTGAAATACCCTTGGTTTGTAAAATTACCAAAATACCATCGATCAGAAAAATTACAAAA
ATACCCTACTTTCTAAAATTACCAGAATACCACTGGTTTGTG
Found at i:97185877 original size:27 final size:27
Alignment explanation
Indices: 97185847--97185906 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
97185837 ACCCCTATTA
97185847 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
**
97185874 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
97185901 GGTAAA
1 GGTAAA
97185907 GTGACTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.17
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:97185907 original size:27 final size:27
Alignment explanation
Indices: 97185855--97185938 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
97185845 TAGGTAAAAA
97185855 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
97185882 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
** * *
97185909 GACTATAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
97185936 GAC
1 GAC
97185939 GAATATGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:97186785 original size:25 final size:24
Alignment explanation
Indices: 97186747--97186815 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 24
97186737 AGGAAGTACT
* *
97186747 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTACC
* *
97186771 GAAAAGAGCTTTGCCCCAGTTTATC
1 AAAAAG-GCTTTGCCCCAGTTTACC
97186796 AAAAAGGCTTTGCCCCAGTT
1 AAAAAGGCTTTGCCCCAGTT
97186816 ATTAAAATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 18 0.46
25 21 0.54
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTACC
Found at i:97186822 original size:23 final size:24
Alignment explanation
Indices: 97186747--97186828 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
97186737 AGGAAGTACT
* * *
97186747 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTATC
*
97186771 GAAAAGAGCTTTGCCCCAGTTTATC
1 AAAAAG-GCTTTGCCCCAGTTTATC
*
97186796 AAAAAGGCTTTGCCCCAG-TTATT
1 AAAAAGGCTTTGCCCCAGTTTATC
97186819 AAAATAGGCT
1 AAAA-AGGCT
97186829 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.16
24 21 0.42
25 21 0.42
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:97187790 original size:17 final size:18
Alignment explanation
Indices: 97187748--97187796 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
97187738 AGTTGAAAAG
97187748 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
97187767 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
97187784 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
97187797 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:97188685 original size:40 final size:40
Alignment explanation
Indices: 97188619--97188785 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
97188609 AAATTGAATG
* * *
97188619 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
97188658 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
97188698 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
97188738 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
97188778 ATATCCGG
1 ATATCCGG
97188786 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:97195799 original size:17 final size:18
Alignment explanation
Indices: 97195757--97195805 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
97195747 AGTTGAAAAG
97195757 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
97195776 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
97195793 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
97195806 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:97196694 original size:40 final size:40
Alignment explanation
Indices: 97196628--97196794 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
97196618 AAATTGAATG
* * *
97196628 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
97196667 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
97196707 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
97196747 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
97196787 ATATCCGG
1 ATATCCGG
97196795 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:97198285 original size:30 final size:31
Alignment explanation
Indices: 97198250--97198327 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
97198240 CATTTACAGT
97198250 AAAGGCTTCAG-CCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
97198280 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
97198311 AAAGGCTTCTGCCCAGT
1 AAAGGCTTCAGCCCAGT
97198328 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 9 0.21
31 34 0.79
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:97207878 original size:40 final size:40
Alignment explanation
Indices: 97207823--97208032 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97207813 AACATTGGAA
97207823 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97207863 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97207903 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97207943 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97207982 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97208023 CTATATCCGG
1 ATATATCCGG
97208033 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97216013 original size:40 final size:40
Alignment explanation
Indices: 97215958--97216167 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97215948 AACATTGGAA
97215958 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97215998 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97216038 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97216078 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97216117 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97216158 CTATATCCGG
1 ATATATCCGG
97216168 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97218358 original size:31 final size:31
Alignment explanation
Indices: 97218284--97218346 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
97218274 GGGAGCACTA
*
97218284 GAACAAAAAGAATTTCTTCTATTCTCTAAGT
1 GAACTAAAAGAATTTCTTCTATTCTCTAAGT
*
97218315 GAACTAAAAGAATTTCTTGTATTCTCTAAGT
1 GAACTAAAAGAATTTCTTCTATTCTCTAAGT
97218346 G
1 G
97218347 GACTTAGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (31 bp):
GAACTAAAAGAATTTCTTCTATTCTCTAAGT
Found at i:97227577 original size:20 final size:21
Alignment explanation
Indices: 97227554--97227604 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
97227544 GACATTTTAT
*
97227554 ATATATTGCATAC-ATGTATG
1 ATATATTGCATACAATGCATG
97227574 ATAT-TATG-ATACAATGCATG
1 ATATAT-TGCATACAATGCATG
*
97227594 ACATATTGCAT
1 ATATATTGCAT
97227605 GGGGATGGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 5 0.20
20 17 0.68
21 3 0.12
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATATTGCATACAATGCATG
Found at i:97235658 original size:43 final size:43
Alignment explanation
Indices: 97235542--97235660 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
97235532 GAAGTCCAAA
* * * * * *
97235542 CTCGTTGAGTGGTCCAGGTTCGTGATATATGTG-GCATCCGAG
1 CTCGTTGAGTGGTTCAAGTTCATAATAGATGCGAGCATCCGAG
* * * * *
97235584 CTCGTTGAGTGG-TCTGAGCTCATTATGGATGCGAGCATCTGAG
1 CTCGTTGAGTGGTTC-AAGTTCATAATAGATGCGAGCATCCGAG
97235627 CTCGTTGAGTGGTTCAAGTTCATAATAGATGCGA
1 CTCGTTGAGTGGTTCAAGTTCATAATAGATGCGA
97235661 TACATGTGAT
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.02
42 22 0.37
43 35 0.58
44 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (43 bp):
CTCGTTGAGTGGTTCAAGTTCATAATAGATGCGAGCATCCGAG
Found at i:97244850 original size:19 final size:19
Alignment explanation
Indices: 97244815--97244852 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97244805 TTGCAATTTA
*
97244815 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
97244834 AATTCTTTA-TTTATTTTCT
1 AATT-TTTATTTTATTTTCT
97244853 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:97248553 original size:38 final size:38
Alignment explanation
Indices: 97248502--97248577 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
97248492 AGTGGTTTTA
97248502 GTTTTTATCATCTCGTACGTAAATCTCATAAAATATTC
1 GTTTTTATCATCTCGTACGTAAATCTCATAAAATATTC
97248540 GTTTTTATCATCTCGTACGTAAATCTCATAAAATATTC
1 GTTTTTATCATCTCGTACGTAAATCTCATAAAATATTC
97248578 ATATTTAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (38 bp):
GTTTTTATCATCTCGTACGTAAATCTCATAAAATATTC
Found at i:97257560 original size:39 final size:39
Alignment explanation
Indices: 97257381--97257544 Score: 276
Period size: 39 Copynumber: 4.2 Consensus size: 39
97257371 TATACATATA
*
97257381 TGCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* *
97257420 TGCTTCAATTAGCCTTCGGGCTTTCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
*
97257459 TGCTTCAGTTAGCC-TCTGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCGTTTAGCACTTATG
97257498 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
97257537 TGCTTCAG
1 TGCTTCAG
97257545 CTAGATTTTG
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 2 0.02
39 112 0.97
40 2 0.02
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
Found at i:97269712 original size:31 final size:31
Alignment explanation
Indices: 97269674--97269793 Score: 109
Period size: 31 Copynumber: 3.8 Consensus size: 31
97269664 ACAAATGACT
* *
97269674 AGTGAAAAGCAGTAGCTTCGGCTACTTGATC
1 AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
*
97269705 AGTGAAAAGTGGTAG-TTCCGGCTACCTGAT-
1 AGTGAAAAGTAGTAGCTT-CGGCTACCTGATC
* * * *
97269735 AGATAAAAAAAATGGTAGCTCCGGCTACCTGATC
1 AG-T--GAAAAGTAGTAGCTTCGGCTACCTGATC
* *
97269769 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTAGTAGCTTCGGCTAC
97269794 AAGTGACAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
30 4 0.05
31 43 0.59
33 23 0.32
34 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
Found at i:97269889 original size:46 final size:47
Alignment explanation
Indices: 97269816--97269909 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 47
97269806 ACAAGTGATT
*
97269816 TCCGTATAAGACCATATATGGGATATGGCATC-AGTGTGATATGTGA
1 TCCGTATAAGACCATAGATGGGATATGGCATCGAGTGTGATATGTGA
* * * * * *
97269862 TCCGTGTAAGACCATGGCTGGGCTATGGCTTCGGTGTGTGATATGTGA
1 TCCGTATAAGACCATAGATGGGATATGGCATC-GAGTGTGATATGTGA
97269910 CTATGCGCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
46 26 0.67
48 13 0.33
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (47 bp):
TCCGTATAAGACCATAGATGGGATATGGCATCGAGTGTGATATGTGA
Found at i:97271767 original size:39 final size:39
Alignment explanation
Indices: 97271708--97271887 Score: 281
Period size: 39 Copynumber: 4.6 Consensus size: 39
97271698 TATATATATA
* *
97271708 TGCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
*
97271747 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
97271786 TGCTTCAGTTAGCC-TCTGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCATTTAGCACTTATG
*
97271825 TACTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* **
97271864 TGCTTCAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
97271888 AGATCACGAT
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.02
39 128 0.97
40 2 0.02
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
Found at i:97273236 original size:31 final size:31
Alignment explanation
Indices: 97273198--97273317 Score: 134
Period size: 31 Copynumber: 3.8 Consensus size: 31
97273188 ACAAATGACA
**
97273198 AGTGAAAAGTAGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
*
97273229 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-
1 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
* * *
97273259 AGATAAAAAAAATGGTAGCTCCGGCTACCTGATC
1 AG-T--GAAAAGTAGTAGCTCCGGCTACCTGATC
* *
97273293 AGTGAATAGTAGTAGCTCCGACTAC
1 AGTGAAAAGTAGTAGCTCCGGCTAC
97273318 AAGTGACAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
30 2 0.03
31 45 0.60
33 26 0.35
34 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
Found at i:97275292 original size:39 final size:39
Alignment explanation
Indices: 97275230--97275409 Score: 252
Period size: 39 Copynumber: 4.6 Consensus size: 39
97275220 TATACATATA
* * *
97275230 TGCTTCAGTTCGCCTCCGAGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* * *
97275269 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGGACTTATA
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
*
97275308 TGCTTCAGTTAGCCTTTGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* *
97275347 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGGACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* **
97275386 TGCTTCAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
97275410 AGATCACGAA
Statistics
Matches: 125, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
Found at i:97275355 original size:78 final size:78
Alignment explanation
Indices: 97275226--97275393 Score: 291
Period size: 78 Copynumber: 2.2 Consensus size: 78
97275216 TTTCTATACA
*
97275226 TATATGCTTCAGTTCGCCTCCGAGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCT
1 TATATGCTTCAGTTAGCCTCCGAGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCT
97275291 TCCGTTTAGGACT
66 TCCGTTTAGGACT
** *
97275304 TATATGCTTCAGTTAGCCTTTGGGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCT
1 TATATGCTTCAGTTAGCCTCCGAGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCT
97275369 TCCGTTTAGGACT
66 TCCGTTTAGGACT
*
97275382 TATGTGCTTCAG
1 TATATGCTTCAG
97275394 CTAGATTTCG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 85 1.00
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (78 bp):
TATATGCTTCAGTTAGCCTCCGAGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCT
TCCGTTTAGGACT
Found at i:97276828 original size:31 final size:31
Alignment explanation
Indices: 97276716--97276836 Score: 127
Period size: 31 Copynumber: 3.8 Consensus size: 31
97276706 ACAAATGACA
* * * *
97276716 AGTGAAAAGTAGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
97276747 AGTGAAAAGTGGTAGCTCCGGCTACCTGA-T
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
* *
97276777 AGATAAAAAAAAATGGTAGCTCCGGCTACCTGATT
1 AG-T---GAAAAGTGGTAGCTCCGGCTACCTGATT
* *
97276812 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
97276837 AAGTGACAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
30 2 0.03
31 45 0.60
34 25 0.33
35 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
Found at i:97278809 original size:39 final size:39
Alignment explanation
Indices: 97278747--97278926 Score: 218
Period size: 39 Copynumber: 4.6 Consensus size: 39
97278737 TATACATATA
* * *
97278747 TGCTTCAGATAGCCTCCGAGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
*
97278786 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* * *
97278825 TGTTTTAGTTAGCC-TCTAGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCATTTAGCACTTATG
** * *
97278864 CACTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* **
97278903 TGCTTCAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
97278927 AGATCAAGAT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
38 2 0.02
39 114 0.97
40 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
Found at i:97278926 original size:78 final size:78
Alignment explanation
Indices: 97278747--97278914 Score: 248
Period size: 78 Copynumber: 2.2 Consensus size: 78
97278737 TATACATATA
* * ** *
97278747 TGCTTCAGATAGCCTC-CGAGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCC
1 TGCTTCAGCTAGCCTCTAG-GCTTCCATTTAGCACTTATGCACTTCAATTAGCCTTCGGGCTTCC
97278811 GTTTAGCACTTATG
65 GTTTAGCACTTATG
* * *
97278825 TGTTTTAGTTAGCCTCTAGGCTTCCATTTAGCACTTATGCACTTCAATTAGCCTTCGGGCTTCCG
1 TGCTTCAGCTAGCCTCTAGGCTTCCATTTAGCACTTATGCACTTCAATTAGCCTTCGGGCTTCCG
97278890 TTTAGCACTTATG
66 TTTAGCACTTATG
97278903 TGCTTCAGCTAG
1 TGCTTCAGCTAG
97278915 ATTTCGGGCT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 78 0.99
79 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.38
Consensus pattern (78 bp):
TGCTTCAGCTAGCCTCTAGGCTTCCATTTAGCACTTATGCACTTCAATTAGCCTTCGGGCTTCCG
TTTAGCACTTATG
Found at i:97280765 original size:15 final size:15
Alignment explanation
Indices: 97280745--97280774 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97280735 GAGCATATAG
97280745 TTTCTAGTTTATTAA
1 TTTCTAGTTTATTAA
97280760 TTTCTAGTTTATTAA
1 TTTCTAGTTTATTAA
97280775 GTAATTTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTCTAGTTTATTAA
Found at i:97283607 original size:19 final size:19
Alignment explanation
Indices: 97283580--97283617 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97283570 TCAAATACTA
97283580 GTTTCAGATGTCCCTTTTT
1 GTTTCAGATGTCCCTTTTT
*
97283599 GTTTTAGATGTCCCTTTTT
1 GTTTCAGATGTCCCTTTTT
97283618 CTGTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.18, G:0.16, T:0.55
Consensus pattern (19 bp):
GTTTCAGATGTCCCTTTTT
Found at i:97285249 original size:15 final size:15
Alignment explanation
Indices: 97285229--97285265 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
97285219 AGATGATACC
*
97285229 TTATTTTTATTTTAT
1 TTATTTATATTTTAT
*
97285244 TTATTTATGTTTTAT
1 TTATTTATATTTTAT
97285259 TTATTTA
1 TTATTTA
97285266 ATTACAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTATATTTTAT
Found at i:97285261 original size:19 final size:19
Alignment explanation
Indices: 97285229--97285265 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
97285219 AGATGATACC
97285229 TTATTTTTATTTTATTTAT
1 TTATTTTTATTTTATTTAT
97285248 TTATGTTTTA-TTTATTTA
1 TTAT-TTTTATTTTATTTA
97285266 ATTACAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTATTTTTATTTTATTTAT
Found at i:97289359 original size:491 final size:491
Alignment explanation
Indices: 97288459--97289749 Score: 1775
Period size: 491 Copynumber: 2.6 Consensus size: 491
97288449 TACTATGTTG
* * *
97288459 CAACATAGG-GGACGTTTCACGCCATAAAAGTCATTTTGTGGGCTTGGAAGTTCTTATCGTGCTT
1 CAACATAGGAGG-CGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGCTT
* * *
97288523 TTATGGCGTGTGAAGCTTGTGCAACACTCATCCCACATTCCTACATCAATTGGGCCTAGAATTAA
65 TTATGGCATGAGAAGCTTGTGCAACACTCGTCCCACATTCCTACATCAATTGGGCCTAGAATTAA
* *
97288588 GCATCTTGTACACTTAAATACACAAATTAAACCTAACTATGGTCCGTGTCTGCCTAATAGGTCAC
130 GCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTCAC
* * * * ** *
97288653 TAATACAAAAAAATGTGTCATATCATGACCCTTCCATGTCGCGACATCAGACTCTAATGTTGCAA
195 TAACACAAAAAAATGTGCCATATCATGACCCTTCGATGTCGCAACATTGGACTCTGATGTTGCAA
* * * *
97288718 CACTGTAGGCTTGTGTTGCAACCAACCCCCTGCATAGCCCAAAAATCCCCTGTGTACAGAGACCT
260 CACTGCAGGCCTGTGTTGCAACCAACCCCCTACATAGCCCAAAAAGCCCCTGTGTACAGAGACCT
*
97288783 CTTATTTATGGGCCAAAATATGTGCACTTTATGCCTGATATGCCCCCGATACTAATAAATGTGAA
325 CTTATTTATGGGCCAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTGAA
** *
97288848 ATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGATGTCATTATTACTTGTGACTCA
390 ATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACATCATTATTACTTATGACTCA
97288913 TGTTCAGGCTACGGT-TCAACATAGGAGATGCTACACCT
455 TGTTCAGGCTAC-GTCTCAACATAGGAGATGCTACA-CT
* *
97288951 CAACATAGGAGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCCTGTCATGCTTT
1 CAACATAGGAGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGCTTT
*
97289016 TATGGCATGAGAAGCTTGTGCAACACTCGTCCCATATTCCTACATCAATTGGGCCTAGAATTAAG
66 TATGGCATGAGAAGCTTGTGCAACACTCGTCCCACATTCCTACATCAATTGGGCCTAGAATTAAG
*
97289081 CATCTTGTACACTTAAATACACAAATT-AAGCTACCTATGGTCTGTGTCTGCCTAATAGGTCACT
131 CATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTCACT
* * * * *
97289145 GACACTAAAAAATGTGCCATATCATGACCTTTTGATGTTGCAACATTGGACTCTGATGTTGCAAC
196 AACACAAAAAAATGTGCCATATCATGACCCTTCGATGTCGCAACATTGGACTCTGATGTTGCAAC
*
97289210 ACTGCAGGCCTATGTTGCAACCAACCCCCTACATAGCCC-AAAAGCCCCTTGTGTACAGAGACCT
261 ACTGCAGGCCTGTGTTGCAACCAACCCCCTACATAGCCCAAAAAGCCCC-TGTGTACAGAGACCT
* * * * * *
97289274 TTTATTTATAGGG-TAGAATATGTGCACTTTATCCCTTATATGCCCCTGATACTAGTAAATGTGA
325 CTTATTTAT-GGGCCAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTGA
*
97289338 AATATTAAATGATATCATAAAATCTTTTCAAACACGACCACTGACATCATTATTACTTATGACTC
389 AATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACATCATTATTACTTATGACTC
*
97289403 ATGTTCAGGCTACGTCTCAATATAGGAGATGCTACACT
454 ATGTTCAGGCTACGTCTCAACATAGGAGATGCTACACT
* * * *
97289441 CAACATAGGGCTGCTATGTTGCAACATAGGGAGCGTGTCATGCCAGAGAAGTCATTTCGTGGACT
1 CAAC--A-------TA-G--G------A--G-GCGTGTCACGCCATAGAAGTCATTTTGTGGGCT
** * *
97289506 TTAAAGTTCTTATCATGCTTGTATGGCATGAGAAGCTTGTACAACACTCGTCCCACATTCCTACA
45 TGGAAGTTCTTATCATGCTTTTATGGCATGAGAAGCTTGTGCAACACTCGTCCCACATTCCTACA
* * * * * **
97289571 TTAGTTGGGCCTAAAATTAAGTATCTTGCACACTTAAATACACAAATTAAACCTACCTAAAGTCC
110 TCAATTGGGCCTAGAATTAAGCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGT-C
* *
97289636 T-TGTCTGCCTAATAGGTCACTAACACCAAAAAATGTGCCATATCATGACCCTTCGATGTCACAA
174 TGTGTCTGCCTAATAGGTCACTAACACAAAAAAATGTGCCATATCATGACCCTTCGATGTCGCAA
97289700 CATTGGACTCTGATGTTGCAACACTGCAGGCCTGTGTTGCAACCAACCCC
239 CATTGGACTCTGATGTTGCAACACTGCAGGCCTGTGTTGCAACCAACCCC
97289750 TGCGTAGCTT
Statistics
Matches: 705, Mismatches: 67, Indels: 34
0.87 0.08 0.04
Matches are distributed among these distances:
490 16 0.02
491 283 0.40
492 149 0.21
493 2 0.00
499 2 0.00
500 1 0.00
502 1 0.00
508 1 0.00
510 1 0.00
511 130 0.18
512 117 0.17
513 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (491 bp):
CAACATAGGAGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGCTTT
TATGGCATGAGAAGCTTGTGCAACACTCGTCCCACATTCCTACATCAATTGGGCCTAGAATTAAG
CATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTCACT
AACACAAAAAAATGTGCCATATCATGACCCTTCGATGTCGCAACATTGGACTCTGATGTTGCAAC
ACTGCAGGCCTGTGTTGCAACCAACCCCCTACATAGCCCAAAAAGCCCCTGTGTACAGAGACCTC
TTATTTATGGGCCAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTGAAA
TATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACATCATTATTACTTATGACTCAT
GTTCAGGCTACGTCTCAACATAGGAGATGCTACACT
Found at i:97293999 original size:47 final size:47
Alignment explanation
Indices: 97293885--97294015 Score: 192
Period size: 47 Copynumber: 2.8 Consensus size: 47
97293875 GTGCGAGTGA
* *
97293885 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAGTGAAGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGGGAAGAGT
* *
97293933 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCCGGGATA-AGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGA-AGAGT
*
97293980 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
97294016 TATCGATTAA
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 42 0.55
48 34 0.45
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAAGAGT
Found at i:97298963 original size:39 final size:40
Alignment explanation
Indices: 97298898--97299143 Score: 240
Period size: 39 Copynumber: 6.2 Consensus size: 40
97298888 AATGTTCGGA
* *
97298898 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AC
* * **
97298939 T-AAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAC
97298977 TGATATCCGGGCTAAG-CCCGAAGGCCA-TTGTGCGAGTA-
1 TGATATCCGGGCTAAGTCCCGAAGG-CATTTGTGCGAGTAC
*
97299015 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGT-C
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAC
* * * *
97299053 GTGATATCCGGGTTAAGTCCCAAAGGCCTTTGTGCAAGTTAC
1 -TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAC
* * * **
97299095 T-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAGTAGC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-C
97299135 T-ATATCCGG
1 TGATATCCGG
97299144 TTAAACTCCG
Statistics
Matches: 173, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
37 2 0.01
38 35 0.20
39 67 0.39
40 65 0.38
41 3 0.02
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAC
Found at i:97299033 original size:77 final size:79
Alignment explanation
Indices: 97298898--97299107 Score: 277
Period size: 77 Copynumber: 2.7 Consensus size: 79
97298888 AATGTTCGGA
* *
97298898 TGATAACCGGGCTAAGTCCCGAAGG-CATTTGTGCTAGTGACTAAATCCGGGCTAAGCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGGCCA-TTGTGCGAGTGACTAAATCCGGGCTAAGCCCGAAGG
*
97298962 CAATTGTGCGAGTTG
65 CAATTGTGCGAGTCG
*
97298977 TGATATCCGGGCTAAG-CCCGAAGGCCATTGTGCGAGT-A-TGATATCCGGGCTAAGCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGGCCATTGTGCGAGTGACT-AAATCCGGGCTAAGCCCGAAGG
97299039 CAATTGTGCGAGTCG
65 CAATTGTGCGAGTCG
* * * * *
97299054 TGATATCCGGGTTAAGTCCCAAAGGCCTTTGTGCAAGTTACTATAA-CCGGGCTA
1 TGATATCCGGGCTAAGTCCCGAAGGCCATTGTGCGAGTGACTA-AATCCGGGCTA
97299108 TGTCCTGAAG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
76 1 0.01
77 51 0.44
78 35 0.30
79 27 0.23
80 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGTCCCGAAGGCCATTGTGCGAGTGACTAAATCCGGGCTAAGCCCGAAGGC
AATTGTGCGAGTCG
Found at i:97302171 original size:42 final size:43
Alignment explanation
Indices: 97302057--97302209 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 43
97302047 ATAGGATTCT
* * * *
97302057 GATATGTGATTTCATGTAAGACCACGTTTGGGAC-GTTGGCATC
1 GATATTTGATTACATGTAAGACCATGTTTGGGACAG-TGACATC
* *
97302100 GGT-TTGAGATTTACATGTAAGACCATGTTTGGGACA-TCGACATC
1 GATATT-TGA-TTACATGTAAGACCATGTTTGGGACAGT-GACATC
* * * * *
97302144 G-TATTTGTTTTCGTGTAAGACCCTGTTTGGGACAGTGGCATC
1 GATATTTGATTACATGTAAGACCATGTTTGGGACAGTGACATC
97302186 GATATTTGATTACATGTAAGACCA
1 GATATTTGATTACATGTAAGACCA
97302210 AGTCTGGGGC
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
42 30 0.34
43 26 0.30
44 31 0.36
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCATGTTTGGGACAGTGACATC
Found at i:97302226 original size:43 final size:43
Alignment explanation
Indices: 97302057--97302227 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
97302047 ATAGGATTCT
* * *
97302057 GATATGTGATTTCATGTAAGACCACGTTTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCATGTTTGGGACGTTGGCATC
* * * * *
97302100 GGT-TTGAGATTTACATGTAAGACCATGTTTGGGACATCGACATC
1 GATATT-TGA-TTACATGTAAGACCATGTTTGGGACGTTGGCATC
* * * *
97302144 G-TATTTGTTTTCGTGTAAGACCCTGTTTGGGACAG-TGGCATC
1 GATATTTGATTACATGTAAGACCATGTTTGGGAC-GTTGGCATC
* * *
97302186 GATATTTGATTACATGTAAGACCAAGTCTGGGGCGTTGGCAT
1 GATATTTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
97302228 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 30 0.30
43 37 0.37
44 32 0.32
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCATGTTTGGGACGTTGGCATC
Found at i:97313260 original size:54 final size:54
Alignment explanation
Indices: 97313066--97313489 Score: 519
Period size: 54 Copynumber: 7.9 Consensus size: 54
97313056 TTTCCTTTTT
* * * * * * *
97313066 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * *** *
97313119 GAACTCACCAATGCCATGCCTTAGCATGGTCTTACAT-AGGACCTTTGCCTTACA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATA
* * *
97313173 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
*
97313228 AAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
*
97313282 GAACTTATCAATGCCCTGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * *
97313336 GAATTTATCAAGGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCCTATT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * * * * **
97313390 TAACTTATCAATGCCATGCCTTGACATGTTCTTAAATGATATCCATATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* *
97313444 GAACTTATCAATGCCATGCCTTGTCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
97313490 ATCTTATCAA
Statistics
Matches: 320, Mismatches: 47, Indels: 7
0.86 0.13 0.02
Matches are distributed among these distances:
52 2 0.01
53 39 0.12
54 235 0.73
55 41 0.13
56 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:97313277 original size:29 final size:29
Alignment explanation
Indices: 97313244--97313332 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
97313234 ATCAATGCCA
97313244 TGCCTTGGCATGGTCTTACATGATTTCCT
1 TGCCTTGGCATGGTCTTACATGATTTCCT
** * *
97313273 TGCCTT---ATAGAACTTATCA--A-TGCCC
1 TGCCTTGGCAT-GGTCTTA-CATGATTTCCT
97313298 TGCCTTGGCATGGTCTTACATGATTTCCT
1 TGCCTTGGCATGGTCTTACATGATTTCCT
97313327 TGCCTT
1 TGCCTT
97313333 ATAGAATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 9 0.20
26 5 0.11
27 10 0.23
28 5 0.11
29 15 0.34
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.39
Consensus pattern (29 bp):
TGCCTTGGCATGGTCTTACATGATTTCCT
Found at i:97317961 original size:28 final size:28
Alignment explanation
Indices: 97317915--97317983 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97317905 TTTAAAACCC
*
97317915 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97317942 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97317970 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97317984 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97321819 original size:17 final size:18
Alignment explanation
Indices: 97321797--97321837 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
97321787 GGATGAACAC
97321797 TTTTCTTCCTTT-TTTTT
1 TTTTCTTCCTTTGTTTTT
*
97321814 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTGTTTTT
*
97321832 GTTTCT
1 TTTTCT
97321838 CTCATGTACG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTCTTCCTTTGTTTTT
Found at i:97328583 original size:40 final size:40
Alignment explanation
Indices: 97328433--97328600 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
97328423 CGGAATACAA
* * *
97328433 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
97328473 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
97328513 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
97328553 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
97328593 CCGGATAT
1 CCGGATAT
97328601 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97329859 original size:17 final size:18
Alignment explanation
Indices: 97329839--97329875 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
97329829 ACTTTTCTTC
*
97329839 CTTTCTTT-TTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
97329856 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
97329874 CT
1 CT
97329876 CTCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:97330878 original size:11 final size:11
Alignment explanation
Indices: 97330862--97330886 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97330852 AGATCATAAA
97330862 ATTATTTTTAT
1 ATTATTTTTAT
97330873 ATTATTTTTAT
1 ATTATTTTTAT
97330884 ATT
1 ATT
97330887 TACGGCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTTTTAT
Found at i:97331710 original size:47 final size:47
Alignment explanation
Indices: 97331599--97331729 Score: 183
Period size: 47 Copynumber: 2.8 Consensus size: 47
97331589 GTGCAAGTGA
* * *
97331599 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCAGTGAAGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGGGAAGAGT
* *
97331647 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCCGGGATA-AGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGA-AGAGT
*
97331694 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
97331730 TATCGATTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 42 0.56
48 33 0.44
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAAGAGT
Found at i:97335505 original size:31 final size:31
Alignment explanation
Indices: 97335470--97335533 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
97335460 CCTTTTCATG
97335470 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
97335501 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
97335532 TT
1 TT
97335534 ACTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:97335775 original size:24 final size:24
Alignment explanation
Indices: 97335724--97335842 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
97335714 GCTTTATCAT
*
97335724 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97335749 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
97335773 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
97335796 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97335820 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97335843 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97335803 original size:47 final size:48
Alignment explanation
Indices: 97335724--97335842 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
97335714 GCTTTATCAT
*
97335724 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
97335773 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
97335820 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97335843 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:97335918 original size:20 final size:20
Alignment explanation
Indices: 97335893--97335952 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
97335883 TATGATTACC
97335893 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
97335913 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
97335933 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
97335953 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:97335923 original size:11 final size:11
Alignment explanation
Indices: 97335893--97335947 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97335883 TATGATTACC
97335893 TCATGTGCATA
1 TCATGTGCATA
*
97335904 TCA--TACATA
1 TCATGTGCATA
97335913 TCATGTGCATA
1 TCATGTGCATA
* *
97335924 TCA--TACATT
1 TCATGTGCATA
97335933 TCATGTGCATA
1 TCATGTGCATA
97335944 TCAT
1 TCAT
97335948 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:97336027 original size:25 final size:25
Alignment explanation
Indices: 97335995--97336042 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97335985 ATACATAAAC
* * *
97335995 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97336020 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97336043 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97343568 original size:30 final size:31
Alignment explanation
Indices: 97343534--97343597 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
97343524 GCCCTTTTCA
97343534 TTTTCATA-TTCATAACACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
**
97343564 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
97343595 TTT
1 TTT
97343598 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 8 0.26
31 23 0.74
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:97343840 original size:24 final size:24
Alignment explanation
Indices: 97343789--97343907 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
97343779 GCTTTATCAT
*
97343789 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97343814 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
97343838 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
97343861 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97343885 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97343908 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97343868 original size:47 final size:48
Alignment explanation
Indices: 97343789--97343907 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
97343779 GCTTTATCAT
*
97343789 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
97343838 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
97343885 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97343908 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:97343983 original size:20 final size:20
Alignment explanation
Indices: 97343958--97344017 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
97343948 TATGATTACC
97343958 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
97343978 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
97343998 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
97344018 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:97343988 original size:11 final size:11
Alignment explanation
Indices: 97343958--97344012 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97343948 TATGATTACC
97343958 TCATGTGCATA
1 TCATGTGCATA
*
97343969 TCA--TACATA
1 TCATGTGCATA
97343978 TCATGTGCATA
1 TCATGTGCATA
* *
97343989 TCA--TACATT
1 TCATGTGCATA
97343998 TCATGTGCATA
1 TCATGTGCATA
97344009 TCAT
1 TCAT
97344013 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:97344092 original size:25 final size:25
Alignment explanation
Indices: 97344060--97344107 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97344050 ATACATAAAC
* * *
97344060 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97344085 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97344108 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97353347 original size:40 final size:40
Alignment explanation
Indices: 97353302--97353431 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
97353292 CGGAATACAA
97353302 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
97353342 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
97353382 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
97353422 CCGGATATAA
1 CCGGATATAA
97353432 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:97353446 original size:40 final size:40
Alignment explanation
Indices: 97353302--97353469 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
97353292 CGGAATACAA
* **
97353302 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
97353342 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
97353382 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
97353422 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
97353462 CCGGATAT
1 CCGGATAT
97353470 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:97356737 original size:24 final size:24
Alignment explanation
Indices: 97356707--97356970 Score: 444
Period size: 24 Copynumber: 11.1 Consensus size: 24
97356697 GAATGTGACT
* *
97356707 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
97356731 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97356755 ATAGTAAATCGCACACATAGTG-C
1 ATAGTAAATCGCACACATAGTGCC
97356778 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97356802 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97356826 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97356850 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97356874 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97356898 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97356922 ATAGT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97356945 ATAGTAAA-CGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97356968 ATA
1 ATA
97356971 TGGTCTTTGC
Statistics
Matches: 233, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
23 64 0.27
24 169 0.73
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:97356992 original size:143 final size:143
Alignment explanation
Indices: 97356707--97356970 Score: 451
Period size: 143 Copynumber: 1.9 Consensus size: 143
97356697 GAATGTGACT
*
97356707 ATAGCAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACA
1 ATAGCAAATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACA
*
97356772 TAGTGCATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCG
66 TAGTGCATAGTAAATCGCACACATAGTGCCATAGTGAAACGCACACATAGTGCCATAGTGAATCG
97356837 CACACATAGTGCC
131 CACACATAGTGCC
* ** *
97356850 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
1 ATAGCAAATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACA
97356915 TAGTGCCATAGT-AATCGCACACATAGTGCCATAGT-AAACGCACACATAGTGCCATA
66 TAGTG-CATAGTAAATCGCACACATAGTGCCATAGTGAAACGCACACATAGTGCCATA
97356971 TGGTCTTTGC
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
142 20 0.18
143 88 0.77
144 6 0.05
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (143 bp):
ATAGCAAATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACA
TAGTGCATAGTAAATCGCACACATAGTGCCATAGTGAAACGCACACATAGTGCCATAGTGAATCG
CACACATAGTGCC
Found at i:97364902 original size:80 final size:80
Alignment explanation
Indices: 97364818--97364966 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
97364808 TATGGTAACC
* * * *
97364818 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
97364882 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
97364898 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
97364963 CCGG
66 CCGG
97364967 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:97364908 original size:40 final size:38
Alignment explanation
Indices: 97364859--97364966 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
97364849 ATCACGATTT
*
97364859 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
97364899 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
97364939 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
97364967 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:97367756 original size:39 final size:33
Alignment explanation
Indices: 97367658--97367756 Score: 180
Period size: 33 Copynumber: 3.0 Consensus size: 33
97367648 GATATATAAC
97367658 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
97367691 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
* *
97367724 ATAGTCTGGGCTTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
97367757 GTGGGCCTAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (33 bp):
ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
Found at i:97367971 original size:27 final size:27
Alignment explanation
Indices: 97367941--97368019 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
97367931 TGCCAGAAAC
*
97367941 AGTAAATGTGGCAAAGCCACTAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTATT
** * **
97367968 AGTAGTTGTGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCAAAGCCACCAGTATT
* * * *
97367995 AGTGAATGTGACATAGTCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
97368020 CAATACTTCC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTATT
Found at i:97368192 original size:27 final size:26
Alignment explanation
Indices: 97368161--97368250 Score: 90
Period size: 27 Copynumber: 3.4 Consensus size: 26
97368151 GGCATAATCT
**
97368161 TCATTTTACCAAACATGGGTATTACGG
1 TCATTTTACCCTACA-GGGTATTACGG
* *
97368188 TCATTTTACCCTACCGGGGCATTACGG
1 TCATTTTACCCTA-CAGGGTATTACGG
* * *
97368215 TTATTTTACCCTATAGGGTATTACGA
1 TCATTTTACCCTACAGGGTATTACGG
*
97368241 TTATTTTACC
1 TCATTTTACC
97368251 TATTTTGGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
26 19 0.36
27 33 0.62
28 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:97368244 original size:26 final size:27
Alignment explanation
Indices: 97368177--97368250 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
97368167 TACCAAACAT
* *
97368177 GGGTATTACGGTCATTTTACCCTACCG
1 GGGTATTACGGTTATTTTACCCTACCA
* *
97368204 GGGCATTACGGTTATTTTACCCTA-TA
1 GGGTATTACGGTTATTTTACCCTACCA
*
97368230 GGGTATTACGATTATTTTACC
1 GGGTATTACGGTTATTTTACC
97368251 TATTTTGGGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTACGGTTATTTTACCCTACCA
Found at i:97371324 original size:40 final size:40
Alignment explanation
Indices: 97371279--97371446 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
97371269 CGGAATACAA
97371279 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
97371319 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
97371359 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
97371399 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
97371439 CCGGATAT
1 CCGGATAT
97371447 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:97376161 original size:17 final size:18
Alignment explanation
Indices: 97376139--97376173 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
97376129 ATTCTCTCAA
97376139 AAACCTTAAAA-CCCTTT
1 AAACCTTAAAAGCCCTTT
97376156 AAACCTTAAAAGCCCTTT
1 AAACCTTAAAAGCCCTTT
97376174 CATTCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29
Consensus pattern (18 bp):
AAACCTTAAAAGCCCTTT
Found at i:97378059 original size:21 final size:21
Alignment explanation
Indices: 97378018--97378060 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
97378008 ATTTTAATTT
*
97378018 TTTTATTATTAGACTACTAAG
1 TTTTATTATTACACTACTAAG
*
97378039 TTTTATATATTACATTA-TAAG
1 TTTTAT-TATTACACTACTAAG
97378060 T
1 T
97378061 AGGCATTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTTATTATTACACTACTAAG
Found at i:97385544 original size:26 final size:26
Alignment explanation
Indices: 97385515--97385564 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
97385505 GCGTTACTGA
* *
97385515 TACTAGTAGCTTTGCTGCGATATTAT
1 TACTAGCAGCTTTACTGCGATATTAT
* *
97385541 TACTGGCAGTTTTACTGCGATATT
1 TACTAGCAGCTTTACTGCGATATT
97385565 GGTTTATTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (26 bp):
TACTAGCAGCTTTACTGCGATATTAT
Found at i:97389345 original size:22 final size:22
Alignment explanation
Indices: 97389317--97389358 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
97389307 AGAAAACGAA
97389317 AGCTTAGTCCACAATTTATCAG
1 AGCTTAGTCCACAATTTATCAG
*
97389339 AGCTTAGTCCACGATTTATC
1 AGCTTAGTCCACAATTTATC
97389359 GGGCCGTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (22 bp):
AGCTTAGTCCACAATTTATCAG
Found at i:97391209 original size:53 final size:52
Alignment explanation
Indices: 97391068--97391227 Score: 198
Period size: 52 Copynumber: 3.1 Consensus size: 52
97391058 TGACGGAAAA
* * *
97391068 GATGTGATATGTGCTTCTGTATAAGACCATAACAGGGCTATGGCATCGATA-
1 GATGTGATATGTGCTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT
* * *
97391119 AAGTTTGAT-TCGTGCTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT
1 GA-TGTGATAT-GTGCTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT
* * *
97391172 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTAT
1 GATGTGAT-ATGTGCTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT
97391225 GAT
1 GAT
97391228 ATGTGATCCA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
51 2 0.02
52 47 0.51
53 42 0.46
54 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (52 bp):
GATGTGATATGTGCTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT
Found at i:97391246 original size:46 final size:51
Alignment explanation
Indices: 97391139--97391248 Score: 131
Period size: 53 Copynumber: 2.2 Consensus size: 51
97391129 CGTGCTCCCG
* *
97391139 TATAAGACCATAACTGGGCTATGGCATCGGTATGATGTGATAATGTGATTCCG
1 TATAAGACCATAACTGGGATATGGCATCGG-ATGA-GTGATAATGTGATTCCA
*
97391192 TATAAGACCATATCTGGGATATGGCATCGG-T-A-TGAT-ATGTGA-TCCA
1 TATAAGACCATAACTGGGATATGGCATCGGATGAGTGATAATGTGATTCCA
*
97391238 TGTAAGACCAT
1 TATAAGACCAT
97391249 GGCAGGGCTA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
46 13 0.25
47 6 0.11
48 4 0.08
50 1 0.02
51 1 0.02
53 28 0.53
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
TATAAGACCATAACTGGGATATGGCATCGGATGAGTGATAATGTGATTCCA
Found at i:97391278 original size:46 final size:47
Alignment explanation
Indices: 97391179--97391278 Score: 105
Period size: 46 Copynumber: 2.1 Consensus size: 47
97391169 TATGATGTGA
* * * *
97391179 TAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATG
1 TAATGTGATTCCATATAAGACCATAGCAGGGATATGGCATCGGCATG
* * * *
97391226 -ATATGTGA-TCCATGTAAGACCATGGCAGGGCTATGGCTTCGGCATG
1 TA-ATGTGATTCCATATAAGACCATAGCAGGGATATGGCATCGGCATG
97391272 TAATGTG
1 TAATGTG
97391279 TGACAATGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
46 36 0.84
47 7 0.16
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (47 bp):
TAATGTGATTCCATATAAGACCATAGCAGGGATATGGCATCGGCATG
Found at i:97394155 original size:39 final size:39
Alignment explanation
Indices: 97394039--97394276 Score: 315
Period size: 39 Copynumber: 6.2 Consensus size: 39
97394029 AGGATTTTAA
* * *
97394039 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTG-GTAT-TATAT
* *
97394077 CCGGGCTAATTCCCGAAGGCATTC-TGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
97394115 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* *
97394154 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
*
97394193 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* * * *
97394232 CCGAGCTAAGTCCTGAAGGC-TTTGTGCTGGTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
97394270 CCGGGCT
1 CCGGGCT
97394277 TAAAGTCCGC
Statistics
Matches: 180, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 71 0.39
39 109 0.61
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
Found at i:97398536 original size:92 final size:92
Alignment explanation
Indices: 97398425--97398595 Score: 324
Period size: 92 Copynumber: 1.9 Consensus size: 92
97398415 CGCCCATAAG
* *
97398425 CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97398490 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
97398517 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97398582 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97398596 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:97398592 original size:46 final size:46
Alignment explanation
Indices: 97398418--97398592 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
97398408 TGTAACCCGC
* *
97398418 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
97398464 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
97398510 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97398556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97398593 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.