Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 314 of 425
Found at i:97731615 original size:20 final size:20
Alignment explanation
Indices: 97731590--97731627 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97731580 GTTTATTCGC
*
97731590 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97731610 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97731628 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97733288 original size:28 final size:28
Alignment explanation
Indices: 97733256--97733324 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97733246 GCGTAGATCA
97733256 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97733284 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97733312 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97733325 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97739600 original size:20 final size:20
Alignment explanation
Indices: 97739575--97739612 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97739565 GTTTATTCGC
*
97739575 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97739595 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97739613 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97741285 original size:27 final size:28
Alignment explanation
Indices: 97741239--97741306 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
97741229 GCGTAGATCA
97741239 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97741267 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97741294 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97741307 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 2 0.05
27 28 0.74
28 8 0.21
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97744392 original size:20 final size:20
Alignment explanation
Indices: 97744367--97744404 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97744357 GTTTATTCGC
*
97744367 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97744387 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97744405 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97746063 original size:28 final size:28
Alignment explanation
Indices: 97746031--97746099 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97746021 GCGTAGATCA
97746031 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97746059 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97746087 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97746100 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97748944 original size:46 final size:46
Alignment explanation
Indices: 97748894--97749069 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
97748884 TGGTTGAGCA
97748894 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
97748940 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
97748985 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
97749033 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97749070 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97749050 original size:93 final size:93
Alignment explanation
Indices: 97748891--97749062 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
97748881 GGATGGTTGA
* *
97748891 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97748956 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
97748984 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97749049 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
97749063 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97765990 original size:48 final size:48
Alignment explanation
Indices: 97765913--97766026 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 48
97765903 CGAGTTGCTA
*
97765913 ATTTGGCTTCGGGCCATGATAACATTACTTCGGATATAAGCTACATTG
1 ATTTGGCTTCGGGCCATGATAACAGTACTTCGGATATAAGCTACATTG
* * *
97765961 ATTTGGCTTCGAGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
1 ATTTGGCTTCGGGCCATGATAACAGTACTTCGGATATAAGCTACATTG
97766009 ATTTGGCTTCGGGCCATG
1 ATTTGGCTTCGGGCCATG
97766027 GTATAGGTGC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (48 bp):
ATTTGGCTTCGGGCCATGATAACAGTACTTCGGATATAAGCTACATTG
Found at i:97767787 original size:27 final size:26
Alignment explanation
Indices: 97767739--97767798 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
97767729 GCGAGGCTGC
*
97767739 CAGATATTGTGACGAAGTCACCAGACA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
97767766 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
97767792 CAAATAT
1 CAGATAT
97767799 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:97767813 original size:2 final size:2
Alignment explanation
Indices: 97767808--97767841 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97767798 TATATATATA
97767808 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97767842 GCGAAGCCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97768573 original size:27 final size:27
Alignment explanation
Indices: 97768510--97768756 Score: 302
Period size: 27 Copynumber: 9.2 Consensus size: 27
97768500 GGGCAAAATG
* * * *
97768510 GTAATTTTACCC-ACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
97768536 GTAATTTTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
97768563 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
97768590 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
97768617 ATAATTCTACCTTATA-GGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
97768643 GTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
97768670 GTAATTCTACACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
97768697 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
97768723 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
97768751 ATAATT
1 GTAATT
97768757 TTGTAAATCG
Statistics
Matches: 192, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 37 0.19
27 155 0.81
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:97768685 original size:107 final size:107
Alignment explanation
Indices: 97768511--97768756 Score: 350
Period size: 107 Copynumber: 2.3 Consensus size: 107
97768501 GGCAAAATGG
* * * * * * * *
97768511 TAATTTTACCC-ACAAGGGTATCTCGGTAATTTTACCCTATAGGGGTATTTTAGTATTTCTACCC
1 TAATTCTACCCTAC-AGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACAC
97768575 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
65 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
* *
97768618 TAATTCTACCTTATAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACACT
1 TAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACACT
* *
97768683 ACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
66 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
*
97768725 TAATTCTACCCTACAGGGGTATTTCAATAATT
1 TAATTCTACCCTACA-GGGTATTTCAGTAATT
97768757 TTGTAAATCG
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
107 106 0.87
108 16 0.13
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (107 bp):
TAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACACT
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
Found at i:97768772 original size:27 final size:26
Alignment explanation
Indices: 97768741--97768892 Score: 103
Period size: 27 Copynumber: 5.7 Consensus size: 26
97768731 TACCCTACAG
97768741 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAATAATTTT-TAAATCGA
* *** * *
97768768 TGGTAAAACGATAATTCTATAAATCG-
1 GGGTATTTCAATAATT-TTTAAATCGA
** *
97768794 GGGTACTTT-GGTAAATTTTACAAGTCGA
1 GGGTA-TTTCAATAATTTTTA-AA-TCGA
*
97768822 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAATAATTTT-TAAATCGA
*
97768849 GGGTATTTCAGTAATTTTTCAAA-CTGA
1 GGGTATTTCAATAATTTTT-AAATC-GA
*
97768876 GGGTATTTCGATAATTT
1 GGGTATTTCAATAATTT
97768893 CACAAATCAG
Statistics
Matches: 95, Mismatches: 21, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
25 3 0.03
26 12 0.13
27 65 0.68
28 14 0.15
29 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (26 bp):
GGGTATTTCAATAATTTTTAAATCGA
Found at i:97768892 original size:81 final size:81
Alignment explanation
Indices: 97768711--97769018 Score: 187
Period size: 81 Copynumber: 3.8 Consensus size: 81
97768701 TTCTACCCTA
* ** ** * * * **
97768711 CAGGGGTATTTCGATAATTCTAC-CCTACAGGGGTATTTCAATAATTTTGTAAATCGATGGTAAA
1 CAGGGGTATTTCGATAATTTTACAAAT-CAGGGGTATTTCAATAATTTTACAAACCAAAGGTATT
* * *
97768775 AC-GATAATTCTATAAAT
65 TCAG-TAATTTTACAAAT
* * * * *
97768792 C-GGGGTACTTT-GGTAAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAAATCGAGGGTA
1 CAGGGGTA-TTTCGAT-AATTTTACAAATCAG-GGGTATTTCAATAATTTTACAAACCAAAGGTA
*
97768854 TTTCAGTAATTTTTCAAA-
63 TTTCAGTAATTTTACAAAT
* * ***
97768872 CTGAGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATT
1 CAG-GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCAATAATTTTACAAACCAAAGGTATT
**
97768937 TTGGTAATTTTACAAAT
65 TCAGTAATTTTACAAAT
* * ** * * *** **
97768954 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCAATAATTTTACAAACCAAAGGTATTT
97769019 TGGTATTTTT
Statistics
Matches: 182, Mismatches: 35, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
80 10 0.05
81 160 0.88
82 12 0.07
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
CAGGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCAATAATTTTACAAACCAAAGGTATTT
CAGTAATTTTACAAAT
Found at i:97769007 original size:27 final size:27
Alignment explanation
Indices: 97768794--97769037 Score: 227
Period size: 27 Copynumber: 9.0 Consensus size: 27
97768784 CTATAAATCG
* ** *
97768794 GGGTACTTTGGTAAATTTTACAAGTCGA
1 GGGTATTTTGGT-AATTTTACAAACCAA
*** * *
97768822 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * **
97768849 GGGTATTTCAGTAATTTTTCAAACTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
97768876 GGGTATTTCGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
97768903 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
97768930 AGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
**
97768957 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
97768984 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
97769011 GGGTATTTTGGTATTTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
97769038 AGTATTCTAA
Statistics
Matches: 179, Mismatches: 37, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
27 171 0.96
28 8 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:97769029 original size:54 final size:54
Alignment explanation
Indices: 97768833--97769037 Score: 270
Period size: 54 Copynumber: 3.8 Consensus size: 54
97768823 GGTATTTCAA
** ** * *
97768833 TAATTTTACAAATC-GAGGGTATTTCAGTAATTTT-TCAAACTGAGGGTATTTCGA
1 TAATTTTACAAATCAG-GGGTATTTTGGTAATTTTGT-AAACCAAGGGTATTTTGG
* ** *
97768887 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
97768941 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
* *
97768995 TAATTTTACAAACCAGGGGTATTTTGGTATTTTTGTAAACCAA
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAA
97769038 AGTATTCTAA
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
54 133 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
TAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
Found at i:97771889 original size:30 final size:28
Alignment explanation
Indices: 97771853--97771954 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
97771843 GACAAGATTG
* *
97771853 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* * *
97771883 GCACTAAGTGCGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
** *
97771911 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAG-TTTA-AT-TATACA
97771942 GCACTAAGTGTGC
1 GCACTAAGTGTGC
97771955 AGATTCACTA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 21 0.35
29 1 0.02
30 19 0.32
31 19 0.32
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:97775669 original size:13 final size:14
Alignment explanation
Indices: 97775653--97775688 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
97775643 CAATCTCATA
97775653 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
97775666 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
97775679 TCTC-ATTTCA
1 TCTCAATTTCA
97775689 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:97775678 original size:18 final size:19
Alignment explanation
Indices: 97775640--97775680 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
97775630 TGGTTCATGT
97775640 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
97775659 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
97775677 TTTC
1 TTTC
97775681 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:97775873 original size:23 final size:23
Alignment explanation
Indices: 97775842--97775907 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
97775832 CCTGATCAGT
97775842 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
97775864 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
97775886 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
97775908 TCGATAAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:97776305 original size:15 final size:14
Alignment explanation
Indices: 97776279--97776320 Score: 66
Period size: 15 Copynumber: 2.9 Consensus size: 14
97776269 TATATATATT
97776279 ATATAATTCAATCA
1 ATATAATTCAATCA
97776293 ATATAATTTCAATCA
1 ATATAA-TTCAATCA
97776308 ATATAAATTCAAT
1 ATAT-AATTCAAT
97776321 AAATTCATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.23
15 18 0.69
16 2 0.08
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAATTCAATCA
Found at i:97777651 original size:8 final size:8
Alignment explanation
Indices: 97777638--97777666 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
97777628 TATCTTTATT
97777638 ATATAATA
1 ATATAATA
97777646 ATATAATA
1 ATATAATA
97777654 ATATAATA
1 ATATAATA
97777662 ATATA
1 ATATA
97777667 TTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:97779613 original size:31 final size:31
Alignment explanation
Indices: 97779578--97779640 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
97779568 CCTTTTCATA
97779578 TTTCATATTTCATAACACTGGGAT-GAAGCCT
1 TTTCATATTTCATAACACTGGG-TCGAAGCCT
**
97779609 TTTCATATTTCATATTACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGTCGAAGCCT
97779640 T
1 T
97779641 CACTGTAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGTCGAAGCCT
Found at i:97779922 original size:26 final size:25
Alignment explanation
Indices: 97779849--97779932 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
97779839 CTGGAGGCCT
*
97779849 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
97779873 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* * *
97779898 AGTCCTTTTCGGTATACTGGGGCAAA
1 AGCCCTTTT-GATAAACTGGGGCAAA
97779924 AGCCCTTTT
1 AGCCCTTTT
97779933 TGCACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 7 0.13
24 13 0.25
25 10 0.19
26 22 0.42
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:97784636 original size:28 final size:28
Alignment explanation
Indices: 97784573--97784674 Score: 134
Period size: 27 Copynumber: 3.6 Consensus size: 28
97784563 ATAGTGAATC
97784573 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
97784600 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
97784628 CGCACACTTAGTGCTGTACAAATTTTAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
97784659 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
97784675 ATCTCATGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 22 0.34
28 21 0.32
29 2 0.03
31 20 0.31
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:97787394 original size:38 final size:35
Alignment explanation
Indices: 97787335--97787435 Score: 120
Period size: 31 Copynumber: 2.9 Consensus size: 35
97787325 TCAATCATGC
*
97787335 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
97787374 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
*
97787405 ACTGGGCCGAAGCCTTTTCAGATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
97787436 ACTAGGCCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
31 26 0.46
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.20
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:97787396 original size:31 final size:31
Alignment explanation
Indices: 97787358--97787452 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
97787348 CCTTTTCATA
*
97787358 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97787389 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
* * *
97787420 TTTCAGATTTCATATTACTAGGCCAAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97787451 TT
1 TT
97787453 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:97787695 original size:24 final size:24
Alignment explanation
Indices: 97787644--97787786 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
97787634 GCTTTATCAT
*
97787644 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97787669 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
97787693 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
97787716 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97787740 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97787764 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97787787 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97787723 original size:47 final size:48
Alignment explanation
Indices: 97787644--97787785 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
97787634 GCTTTATCAT
* *
97787644 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
97787693 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
97787740 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
97787786 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:97787744 original size:71 final size:72
Alignment explanation
Indices: 97787643--97787786 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
97787633 TGCTTTATCA
*
97787643 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
97787708 GCCCTTT
66 GCCCTTT
* * **
97787715 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
97787778 AGCCCTTT
65 AGCCCTTT
97787786 T
1 T
97787787 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:97787862 original size:20 final size:20
Alignment explanation
Indices: 97787837--97787896 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
97787827 TATGATTACC
97787837 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
97787857 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
97787877 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
97787897 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:97787971 original size:25 final size:25
Alignment explanation
Indices: 97787939--97787986 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97787929 ATACATAAAC
* * *
97787939 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97787964 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97787987 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97789206 original size:27 final size:27
Alignment explanation
Indices: 97789144--97789208 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
97789134 GGGCATATTC
97789144 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
97789171 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
97789198 GTCTTTTTACC
1 GTCATTTTACC
97789209 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:97789292 original size:27 final size:26
Alignment explanation
Indices: 97789262--97789317 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
97789252 GTAAATCAAC
*
97789262 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
97789289 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
97789315 AAA
1 AAA
97789318 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:97789409 original size:27 final size:27
Alignment explanation
Indices: 97789270--97789805 Score: 188
Period size: 27 Copynumber: 19.8 Consensus size: 27
97789260 ACAAACCAAA
* * * * *
97789270 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
97789297 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * *
97789326 GGTATTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
97789353 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*
97789380 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
97789407 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** ** *
97789434 GGTAAAACAATAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
97789461 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
97789488 GGTAAAACGGTAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** *
97789515 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
97789542 GGTAAAAT-AGTAATTCTGTAAA-CTGAG
1 GGT-ATTTCGGTAATTTTATAAATC-GAG
** * *
97789569 GGTAAAAT-GGTAATTCTATAAATCGAA
1 GGT-ATTTCGGTAATTTTATAAATCGAG
*** *
97789596 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
97789623 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
97789650 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
97789677 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
97789704 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
97789731 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
97789758 GGTATTTTAGTAATTTTACAAAGC-AA
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
97789784 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
97789806 CCAAAGTATT
Statistics
Matches: 417, Mismatches: 78, Indels: 29
0.80 0.15 0.06
Matches are distributed among these distances:
26 30 0.07
27 353 0.85
28 20 0.05
29 14 0.03
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:97789420 original size:54 final size:54
Alignment explanation
Indices: 97789361--97789680 Score: 322
Period size: 54 Copynumber: 5.9 Consensus size: 54
97789351 GGGGTATTTT
* * * ** *
97789361 GGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAAC
* * * * ** *
97789415 AGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAAC
* * * * *
97789469 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGA-GGGTAAAAC
* * * *
97789523 GGTAATTCTATAAATCGAGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAAT
1 GGTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTATAAATC-GAGGGTAAAAC
* * *
97789577 GGTAATTCTATAAATCGAAGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAAC
** * * *
97789631 GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTA
97789681 TTTCAATAAT
Statistics
Matches: 221, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
53 4 0.02
54 212 0.96
55 5 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (54 bp):
GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAAC
Found at i:97789448 original size:81 final size:81
Alignment explanation
Indices: 97789361--97789653 Score: 374
Period size: 81 Copynumber: 3.6 Consensus size: 81
97789351 GGGGTATTTT
* * *** * *
97789361 GGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
97789426 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
** * *
97789442 AATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGT
1 GGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
* *
97789507 AAATTAGGGGTAAAAC
66 AAATCAAGGGTAAAAC
* ** * *
97789523 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTA
1 GGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTG
97789587 TAAATCGAA-GGTAAAAC
65 TAAATC-AAGGGTAAAAC
* *
97789604 GGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
97789654 CTTTGGTAAT
Statistics
Matches: 182, Mismatches: 27, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 179 0.98
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
AAATCAAGGGTAAAAC
Found at i:97789691 original size:81 final size:80
Alignment explanation
Indices: 97789363--97789707 Score: 300
Period size: 81 Copynumber: 4.3 Consensus size: 80
97789353 GGTATTTTGG
* * *** * **
97789363 TAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT-A
1 TAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TAA
*
97789427 AATCAAGGGTAAAACAA
64 AATCGAGGGTAAAACAA
* *
97789444 TAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAA
1 TAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TAA
* * **
97789509 ATTAG-GGGTAAAACGG
64 AATCGAGGGTAAAACAA
* ** *
97789525 TAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTATA
1 TAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTTTA-A
* **
97789589 AATCGAAGGTAAAACGG
64 AATCGAGGGTAAAACAA
* * ***
97789606 TAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAA
1 TAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTA-AA
* ***
97789671 GTCGAGGGTATTTCAA
65 ATCGAGGGTAAAACAA
* **
97789687 TAATTTTACAGGTCGAGGGTA
1 TAATTCTACAAATCGAGGGTA
97789708 TTTCAGTAAT
Statistics
Matches: 219, Mismatches: 40, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
79 2 0.01
80 5 0.02
81 208 0.95
82 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.30
Consensus pattern (80 bp):
TAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAA
TCGAGGGTAAAACAA
Found at i:97789806 original size:53 final size:54
Alignment explanation
Indices: 97789702--97789818 Score: 157
Period size: 53 Copynumber: 2.2 Consensus size: 54
97789692 TTACAGGTCG
* ** *
97789702 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTCACAAAGCAGAGGTATTTTGGTAATTTTATAAACCA
* *
97789756 AGGGTATTTTAGTAATTTTACAAAGCA-AGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTCACAAAGCAGAGGTATTTTGGTAATTTTATAAACCA
*
97789809 A-AGTATTTTA
1 AGGGTATTTTA
97789819 AACATGGATA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 8 0.14
53 25 0.45
54 23 0.41
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTCACAAAGCAGAGGTATTTTGGTAATTTTATAAACCA
Found at i:97790786 original size:71 final size:71
Alignment explanation
Indices: 97790698--97790861 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
97790688 GAGATGTATC
97790698 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
97790763 AGGACA
66 AGGACA
*
97790769 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
97790834 CGGACA
66 AGGACA
97790840 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
97790862 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:97794916 original size:38 final size:35
Alignment explanation
Indices: 97794857--97794956 Score: 120
Period size: 31 Copynumber: 2.9 Consensus size: 35
97794847 TCAATCATGC
*
97794857 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
97794896 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
97794927 ACTGGGCCGAAGCCTTTTCA-ATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
97794957 ACTGGCCGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
30 5 0.09
31 21 0.38
32 1 0.02
33 2 0.04
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.20
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:97794953 original size:30 final size:31
Alignment explanation
Indices: 97794880--97794972 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
97794870 CCTTTTCATA
*
97794880 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97794911 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97794942 TTTCA-ATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97794971 TT
1 TT
97794973 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 13 0.21
30 13 0.21
31 35 0.57
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:97795215 original size:24 final size:24
Alignment explanation
Indices: 97795164--97795306 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
97795154 GCTTTATCAT
*
97795164 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97795189 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
97795213 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
97795236 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97795260 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97795284 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97795307 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97795243 original size:47 final size:48
Alignment explanation
Indices: 97795164--97795305 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
97795154 GCTTTATCAT
* *
97795164 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
97795213 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
97795260 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
97795306 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:97795264 original size:71 final size:72
Alignment explanation
Indices: 97795163--97795306 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
97795153 TGCTTTATCA
*
97795163 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
97795228 GCCCTTT
66 GCCCTTT
* * **
97795235 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
97795298 AGCCCTTT
65 AGCCCTTT
97795306 T
1 T
97795307 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:97795382 original size:20 final size:20
Alignment explanation
Indices: 97795357--97795416 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
97795347 TATGATTACC
97795357 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
97795377 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
97795397 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
97795417 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:97795491 original size:25 final size:25
Alignment explanation
Indices: 97795459--97795506 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97795449 ATACATAAAC
* * *
97795459 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97795484 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97795507 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97796724 original size:27 final size:27
Alignment explanation
Indices: 97796662--97796726 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
97796652 GGGCATATTC
97796662 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
97796689 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
97796716 GTCTTTTTACC
1 GTCATTTTACC
97796727 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:97796873 original size:27 final size:26
Alignment explanation
Indices: 97796787--97796952 Score: 95
Period size: 27 Copynumber: 6.2 Consensus size: 26
97796777 ACAAACCAAA
* * *
97796787 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAA-TTTGTAAATCAAG
* * *
97796814 GGTACTTCTATAATTTTTAAAAGTCAAG
1 GGTATTTCTGTAATTTGT-AAA-TCAAG
*
97796842 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
**
97796869 GGTATTT-TGGTAATTT-TACAAATTGAG
1 GGTATTTCT-GTAATTTGT--AAATCAAG
* *
97796896 GGTATTT-GGTAATTTTGTAAATCGAG
1 GGTATTTCTGTAA-TTTGTAAATCAAG
*** *
97796922 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCTGTAATT-TGTAAATCAAG
97796949 GGTA
1 GGTA
97796953 AAACAGTAAT
Statistics
Matches: 109, Mismatches: 20, Indels: 20
0.73 0.13 0.13
Matches are distributed among these distances:
25 1 0.01
26 25 0.23
27 61 0.56
28 18 0.17
29 4 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
GGTATTTCTGTAATTTGTAAATCAAG
Found at i:97796910 original size:26 final size:27
Alignment explanation
Indices: 97796868--97796925 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
97796858 TGTAAATCAG
*
97796868 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
97796895 GGGTA-TTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
97796921 GGGTA
1 GGGTA
97796926 AAACAGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:97797178 original size:27 final size:27
Alignment explanation
Indices: 97796903--97797167 Score: 347
Period size: 27 Copynumber: 9.9 Consensus size: 27
97796893 GAGGGTATTT
* *
97796903 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* * *
97796930 AGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
*
97796957 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
*
97796984 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* * *
97797011 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTATAAATCGA-GGGTAAAAC
*
97797038 GGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTATAAATCGAGGGTAAAAC
* * *
97797065 AGTAATTCTGTAAA-CTGAGGGTAAAAT
1 GGTAATTCTATAAATC-GAGGGTAAAAC
97797092 GGTAATTCTATAAATCGA-GGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* *
97797118 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
97797145 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTATAAATCGAGGGTA
97797168 CTTTGGTAAT
Statistics
Matches: 211, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.12
27 184 0.87
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAATTCTATAAATCGAGGGTAAAAC
Found at i:97797189 original size:27 final size:27
Alignment explanation
Indices: 97797118--97797314 Score: 173
Period size: 27 Copynumber: 7.3 Consensus size: 27
97797108 GAGGTAAAAC
****
97797118 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
97797145 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
97797172 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
97797199 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
97797226 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
97797253 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
97797280 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
97797306 GGTAATTTT
1 GGTAATTTT
97797315 GTAAACCAAA
Statistics
Matches: 139, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
26 19 0.14
27 119 0.86
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:97797259 original size:54 final size:53
Alignment explanation
Indices: 97797216--97797323 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
97797206 TTACAGGTCG
** *
97797216 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTCAGTAATTTCACAAAGCA-GGGTATTTTGGTAATTTTACAAACCA
* * **
97797270 AGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTCACAAAGCAGGGTATTTTGGTAATTTTACAAACCA
97797323 A
1 A
97797324 AGTATTTTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 26 0.53
54 23 0.47
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTCACAAAGCAGGGTATTTTGGTAATTTTACAAACCA
Found at i:97797328 original size:26 final size:26
Alignment explanation
Indices: 97797245--97797331 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 26
97797235 ACAAATTAGG
97797245 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
97797271 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
97797298 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
97797324 AGTATTTT
1 GGTATTTT
97797332 AAACATGGAT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 28 0.56
27 22 0.44
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:97798685 original size:27 final size:27
Alignment explanation
Indices: 97798628--97798724 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
97798618 AAATTTGTAC
** *
97798628 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCG-AGCTGATTTTAT
*
97798656 AGCACTATGTGTGCGAGCTGATTTTAT
1 AGCACTAAGTGTGCGAGCTGATTTTAT
97798683 AGCACTAAGTGTGCGAGCTGATTTTAT
1 AGCACTAAGTGTGCGAGCTGATTTTAT
97798710 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97798725 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
27 50 0.78
28 14 0.22
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGATTTTAT
Found at i:97814779 original size:80 final size:80
Alignment explanation
Indices: 97814695--97814843 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
97814685 TATGGTAACC
* * * *
97814695 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
97814759 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
97814775 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
97814840 CCGG
66 CCGG
97814844 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:97814785 original size:40 final size:38
Alignment explanation
Indices: 97814736--97814843 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
97814726 ATCACGATTT
*
97814736 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
97814776 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
97814816 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
97814844 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:97821808 original size:28 final size:28
Alignment explanation
Indices: 97821776--97821874 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
97821766 GCAATAAGCC
*
97821776 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
97821804 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
97821832 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
97821861 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97821875 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:97823458 original size:66 final size:68
Alignment explanation
Indices: 97823382--97823568 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
97823372 TAGTACCACT
*
97823382 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
97823444 CACG
65 CACG
97823448 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
97823513 ATCACG
63 ATCACG
97823519 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
97823569 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:97823493 original size:71 final size:71
Alignment explanation
Indices: 97823405--97823568 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
97823395 CGATTTGTCT
97823405 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97823470 CTTTCA
66 CTTTCA
97823476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97823541 CTTTCA
66 CTTTCA
97823547 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
97823569 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:97823606 original size:71 final size:70
Alignment explanation
Indices: 97823405--97823602 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
97823395 CGATTTGTCT
* * *
97823405 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
97823470 CTTTCA
65 CTTTCA
* * *
97823476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
97823541 CTTTCA
65 CTTTCA
* *
97823547 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
97823603 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:97825831 original size:40 final size:40
Alignment explanation
Indices: 97825786--97825915 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
97825776 CGGAATACAA
*
97825786 CCGGATATAACCA-TGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACGAATGCCTTCGGGTCTTAGC
* ** *
97825826 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
97825866 CCGGATGTAGCCACTAGCAC-AATTGCCGTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
97825906 CCGGATATAA
1 CCGGATATAA
97825916 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 2 0.03
40 71 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:97836948 original size:29 final size:28
Alignment explanation
Indices: 97836881--97836952 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
97836871 AAAATTGTTC
* * *
97836881 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
97836909 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
97836938 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97836953 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:97845632 original size:29 final size:30
Alignment explanation
Indices: 97845599--97845698 Score: 118
Period size: 29 Copynumber: 3.5 Consensus size: 30
97845589 GACAAGATTG
* *
97845599 GCACTAAGTGTGCG-GTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97845628 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97845656 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
97845685 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97845699 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
28 23 0.38
29 33 0.54
30 5 0.08
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:97848678 original size:55 final size:54
Alignment explanation
Indices: 97848612--97848744 Score: 146
Period size: 55 Copynumber: 2.4 Consensus size: 54
97848602 CCGTGTATGT
* * *
97848612 ATGTCCACGCCCGTGTTGTTTTGTCAATCTT-GACCATGG-GTAGT-GAGCACGGGC
1 ATGTCCACGCCCGTGTTGTTTTGTCAAT-TTCAACCATGGCCT-CTAGA-CACGGGC
* *
97848666 ATGTCTCACGCCCGTGTTGTTTTCTCAGTTTCAACCATGGCCTCTAGACACGGGC
1 ATGTC-CACGCCCGTGTTGTTTTGTCAATTTCAACCATGGCCTCTAGACACGGGC
*
97848721 ATGTGACACGCCCGTGTTGTTTTG
1 ATGT-CCACGCCCGTGTTGTTTTG
97848745 ACAGATTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
54 7 0.10
55 57 0.85
56 3 0.04
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (54 bp):
ATGTCCACGCCCGTGTTGTTTTGTCAATTTCAACCATGGCCTCTAGACACGGGC
Found at i:97848773 original size:55 final size:55
Alignment explanation
Indices: 97848659--97848762 Score: 129
Period size: 55 Copynumber: 1.9 Consensus size: 55
97848649 GGGTAGTGAG
* * * * *
97848659 CACGGGCATGTCTCACGCCCGTGTTGTTTTCTCAGTTTCAACCATGGCCTCTAGA
1 CACGGGCATGTCACACGCCCGTGTTGTTTTCACAGATTCAACCACGGCCTCTACA
* *
97848714 CACGGGCATGTGACACGCCCGTGTTGTTTTGACAGATTC-ACTCACGGCC
1 CACGGGCATGTCACACGCCCGTGTTGTTTTCACAGATTCAAC-CACGGCC
97848763 ATGTCACACG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 2 0.05
55 40 0.95
ACGTcount: A:0.17, C:0.31, G:0.24, T:0.28
Consensus pattern (55 bp):
CACGGGCATGTCACACGCCCGTGTTGTTTTCACAGATTCAACCACGGCCTCTACA
Found at i:97855107 original size:40 final size:40
Alignment explanation
Indices: 97855048--97855255 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
97855038 CAATTGAATG
* * * *
97855048 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
97855088 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
97855128 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
97855168 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
97855208 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
97855248 ATATCCGG
1 ATATCCGG
97855256 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:97855186 original size:80 final size:80
Alignment explanation
Indices: 97855049--97855255 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
97855039 AATTGAATGA
* * ** * * *
97855049 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
97855114 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
97855127 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
97855192 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
97855209 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
97855256 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:97860058 original size:25 final size:25
Alignment explanation
Indices: 97860030--97860081 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
97860020 GGTAAATGAT
**
97860030 TAACATGCAAAAACATGATAATGTA
1 TAACATGCAAAAACACAATAATGTA
97860055 TAACATGCAAAAACACAATAATGTA
1 TAACATGCAAAAACACAATAATGTA
97860080 TA
1 TA
97860082 CATAAAGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.23
Consensus pattern (25 bp):
TAACATGCAAAAACACAATAATGTA
Found at i:97860426 original size:51 final size:51
Alignment explanation
Indices: 97860363--97860468 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
97860353 CTACCACATA
* *
97860363 ACATGTAACACATCC-CTAATGAACTTGGACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCAC-AATGAACTCGGACCTCTCAACGAGCTCGGATGCT
*
97860414 ACATG-AATCACATCCACCATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 ACATGTAA-CACATCCACAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
97860465 ACAT
1 ACAT
97860469 ATCTCACAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 2 0.04
51 47 0.94
52 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (51 bp):
ACATGTAACACATCCACAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
Found at i:97863503 original size:46 final size:46
Alignment explanation
Indices: 97863447--97863622 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
97863437 TGGTTGAGCA
* *
97863447 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
97863493 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
97863540 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
97863586 CCCTAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97863623 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:97863603 original size:93 final size:93
Alignment explanation
Indices: 97863444--97863615 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
97863434 GGATGGTTGA
* *
97863444 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
97863509 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
97863537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCTAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
97863602 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
97863616 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97867259 original size:40 final size:39
Alignment explanation
Indices: 97867194--97867397 Score: 230
Period size: 40 Copynumber: 5.1 Consensus size: 39
97867184 CAGAATACAA
*
97867194 CCGGATATAATCAC-ACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
97867234 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
97867274 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97867314 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97867354 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
97867394 CCGG
1 CCGG
97867398 GTATCATTCA
Statistics
Matches: 140, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97872274 original size:46 final size:45
Alignment explanation
Indices: 97872218--97872393 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 45
97872208 TGGTTGAGCA
97872218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
* *
97872264 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A-G
*
97872309 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAAG
* * *
97872357 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97872394 GTGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
45 3 0.03
46 59 0.54
47 25 0.23
48 2 0.02
49 1 0.01
50 4 0.04
51 6 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Found at i:97872374 original size:93 final size:93
Alignment explanation
Indices: 97872215--97872384 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
97872205 GGATGGTTGA
* * *
97872215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAGT
97872280 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
*
97872308 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA-GCCCGAGCTCATTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAATGCCCGAACTCATTGAG
97872372 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
97872385 CACTTATGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 69 0.96
94 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:97875909 original size:35 final size:36
Alignment explanation
Indices: 97875843--97875916 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 36
97875833 CCCAGACATG
* *
97875843 GTCTTACACTGGCTTACATCTCGAGGACGATG-CAT
1 GTCTTACACTAGCTTACATCTCAAGGACGATGCCAT
* *
97875878 GTCTTACACTAGCTCT-CATCTCAATGCCGATGCCAT
1 GTCTTACACTAGCT-TACATCTCAAGGACGATGCCAT
97875914 GTC
1 GTC
97875917 CCAGACATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 26 0.79
36 7 0.21
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (36 bp):
GTCTTACACTAGCTTACATCTCAAGGACGATGCCAT
Found at i:97881381 original size:40 final size:40
Alignment explanation
Indices: 97881306--97881381 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
97881296 TATATATATA
* *
97881306 TAGCCAAAGCTATCACAAATCGCACATCAAGTGCCACATT
1 TAGCCAAAGCTATCACAAACCGCACATCAACTGCCACATT
* **
97881346 TAGCCGAAGCTATTTCAAACCGCACA-CTAACTGCCA
1 TAGCCAAAGCTATCACAAACCGCACATC-AACTGCCA
97881382 TTCTTAACCG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.03
40 29 0.97
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.20
Consensus pattern (40 bp):
TAGCCAAAGCTATCACAAACCGCACATCAACTGCCACATT
Found at i:97883995 original size:40 final size:41
Alignment explanation
Indices: 97883906--97884055 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
97883896 GCGCTACTCA
* *
97883906 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
97883947 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
97883987 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
97884028 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
97884056 TAAACCCCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:97892250 original size:81 final size:81
Alignment explanation
Indices: 97892162--97892347 Score: 284
Period size: 81 Copynumber: 2.3 Consensus size: 81
97892152 CGCTGACTCA
* * * * * *
97892162 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGA-TATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
97892227 G-TTATGACACTGGCTC
65 GATTATGACACTGGCTC
* *
97892243 AAAAGCCCTTCGAGACCAAGCTCGGATATGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGGATATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCGG
97892308 ATTATGACACTGGCTC
66 ATTATGACACTGGCTC
97892324 AAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
97892348 ATTTAAACCC
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 31 0.32
81 65 0.68
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.19
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCGG
ATTATGACACTGGCTC
Found at i:97892251 original size:40 final size:41
Alignment explanation
Indices: 97892162--97892347 Score: 286
Period size: 40 Copynumber: 4.6 Consensus size: 41
97892152 CGCTGACTCA
* *
97892162 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
97892203 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
97892243 AAAAGCCCTTCGAGACCAAGCTCGGA-TATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
97892283 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
97892324 AAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
97892348 ATTTAAACCC
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
40 72 0.56
41 57 0.44
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:97896498 original size:40 final size:40
Alignment explanation
Indices: 97896411--97896561 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
97896401 AATTGAATGA
* * * **
97896411 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
97896451 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
97896492 -ATCCGGGCTAAGACCCGAAGG-AATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
97896531 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
97896562 AAATCGTGAT
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
38 1 0.01
39 6 0.07
40 80 0.89
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:97896575 original size:40 final size:39
Alignment explanation
Indices: 97896410--97896593 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
97896400 AAATTGAATG
* * *
97896410 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
97896450 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * * *
97896490 ACATCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
97896530 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
97896569 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
97896594 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 102 0.92
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:97900675 original size:48 final size:48
Alignment explanation
Indices: 97900615--97900712 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 48
97900605 AAATCTCATA
* *
97900615 CCGAAGCCATATCCCATATATAGTCTTACA-CGTAATCTCATATCGATG
1 CCGAAGCCATATCCCAGACATAGTCTTACATCG-AATCTCATATCGATG
* * *
97900663 CCGATGCCATATCCCAGACATGGTCTTACATCGGATCTCATATCGATG
1 CCGAAGCCATATCCCAGACATAGTCTTACATCGAATCTCATATCGATG
97900711 CC
1 CC
97900713 ATGTCCCACA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
48 42 0.95
49 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (48 bp):
CCGAAGCCATATCCCAGACATAGTCTTACATCGAATCTCATATCGATG
Found at i:97903476 original size:28 final size:28
Alignment explanation
Indices: 97903421--97903477 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
97903411 ATCTTCGCTG
* *
97903421 TCTCACACACTAAGTGCCTTACTTAATA
1 TCTCACACACCAAGTGCCTTACTCAATA
97903449 TCTCACACACCAAGTGCCATT-CTCAATA
1 TCTCACACACCAAGTGCC-TTACTCAATA
97903477 T
1 T
97903478 TTCGCATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.32, C:0.32, G:0.07, T:0.30
Consensus pattern (28 bp):
TCTCACACACCAAGTGCCTTACTCAATA
Found at i:97911568 original size:41 final size:40
Alignment explanation
Indices: 97911468--97911619 Score: 178
Period size: 41 Copynumber: 3.8 Consensus size: 40
97911458 TTATAGTGAT
* * * *
97911468 TCGCACAATTGCCTTCGGGAATTTACCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTAGTAAC
* * *
97911508 TCACACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTAGTAAC
* *
97911548 TCGCACAAAATGCCTTCGGGACTTAACCCGATTTTAGTCAC
1 TCGCAC-AAATGCCTTCGGGACTTAACCCGGTTTTAGTAAC
* * *
97911589 TTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -TCGCACAAATGCCTTCGGGACTTAACCCGG
97911620 ATACCATTCG
Statistics
Matches: 94, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 38 0.40
41 51 0.54
42 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTAGTAAC
Found at i:97919746 original size:40 final size:40
Alignment explanation
Indices: 97919696--97919846 Score: 160
Period size: 41 Copynumber: 3.7 Consensus size: 40
97919686 TAGTGATTCG
* * *
97919696 CACAATTGCCTTCGGGAATTTACCCGGATTTAGTAACTCA
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA
* * * *
97919736 CACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA
* * *
97919776 CATAAAATGCCTTCGGGACTTAACCC-GATTTTAGTCACTTA
1 CA-CAAATGCCTTCGGGACTTAACCCGGA-TTTAGTAACTCA
* *
97919817 GCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -CACAAATGCCTTCGGGACTTAACCCGGAT
97919847 ACCATTCGAA
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
40 36 0.40
41 50 0.56
42 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA
Found at i:97925979 original size:18 final size:18
Alignment explanation
Indices: 97925956--97925990 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97925946 AAAAAGGACT
97925956 TTAAGGTAGCTTGAAAAG
1 TTAAGGTAGCTTGAAAAG
97925974 TTAAGGTAGCTTGAAAA
1 TTAAGGTAGCTTGAAAA
97925991 ATATACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.29
Consensus pattern (18 bp):
TTAAGGTAGCTTGAAAAG
Found at i:97929969 original size:22 final size:22
Alignment explanation
Indices: 97929943--97929992 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
97929933 TAAGTGGGTG
97929943 GATTGAAATGGTAAGTATGCAT
1 GATTGAAATGGTAAGTATGCAT
*
97929965 GATTGACATGGTAAGTATGCAT
1 GATTGAAATGGTAAGTATGCAT
97929987 GATTGA
1 GATTGA
97929993 TTGATTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (22 bp):
GATTGAAATGGTAAGTATGCAT
Found at i:97932393 original size:31 final size:31
Alignment explanation
Indices: 97932354--97932420 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
97932344 ACATAATATT
* * *
97932354 TATA-GGAAATATATATGATATATTCCTAAA
1 TATATGGAAAGATACATAATATATTCCTAAA
97932384 TATATGGAAAGATACATAATATATTCCTAAA
1 TATATGGAAAGATACATAATATATTCCTAAA
97932415 TATATG
1 TATATG
97932421 CCTAAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.36
Consensus pattern (31 bp):
TATATGGAAAGATACATAATATATTCCTAAA
Found at i:97934605 original size:43 final size:43
Alignment explanation
Indices: 97934525--97934606 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
97934515 AGATATGTGG
* * *
97934525 CATCAGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCAAA
1 CATCAGAGCTCGTTGAGAGGTCCAAGCTCATGATGGATGCAAA
* *
97934568 CATCTGAGCTCGTTGAGAGGTCCAAGCTCATGGTGGATG
1 CATCAGAGCTCGTTGAGAGGTCCAAGCTCATGATGGATG
97934607 TGTTTCATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
CATCAGAGCTCGTTGAGAGGTCCAAGCTCATGATGGATGCAAA
Found at i:97944032 original size:48 final size:48
Alignment explanation
Indices: 97943961--97944083 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 48
97943951 AAGTGCTCAA
* * * * *
97943961 ATCATGGCCCGAAGCCAACTCAATGTATCTCGCACTCAAAATGCTAAT
1 ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCAAAATGCCAAT
* * *
97944009 ATCATGGCCTGAAGCCAAATCAATGAAGCTCGCACCCAAAGTGCCGAT
1 ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCAAAATGCCAAT
*
97944057 ATCATGGCCCGAACCCAAATCAATGAA
1 ATCATGGCCCGAAGCCAAATCAATGAA
97944084 TTCCCTAATG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (48 bp):
ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCAAAATGCCAAT
Found at i:97944653 original size:21 final size:20
Alignment explanation
Indices: 97944625--97944663 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
97944615 CAAAACTTGT
97944625 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
97944645 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
97944664 CAAAACACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:97946540 original size:21 final size:21
Alignment explanation
Indices: 97946515--97946583 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
97946505 TCCACTTTTC
97946515 TTCTTTCTATCAATTTCTTCT
1 TTCTTTCTATCAATTTCTTCT
** *
97946536 TTC-TT-T-TCGTTTTCCTCTATT
1 TTCTTTCTATCAATTT-CT-T-CT
97946557 TTCTTTCTATCAATTTCTTCT
1 TTCTTTCTATCAATTTCTTCT
97946578 TTCTTT
1 TTCTTT
97946584 TCTTTTTCCC
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 5 0.14
19 3 0.08
20 3 0.08
21 14 0.39
22 3 0.08
23 3 0.08
24 5 0.14
ACGTcount: A:0.10, C:0.23, G:0.01, T:0.65
Consensus pattern (21 bp):
TTCTTTCTATCAATTTCTTCT
Found at i:97946572 original size:42 final size:42
Alignment explanation
Indices: 97946515--97946601 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
97946505 TCCACTTTTC
*
97946515 TTCTTTCTATCAATTTCTTCTTTCTTTTCGTTTTCCTCTATT
1 TTCTTTCTATCAATTTCTTCTTTCTTTTCGTTTTCCCCTATT
*
97946557 TTCTTTCTATCAATTTCTTCTTTCTTTTCTTTTTCCCCTATT
1 TTCTTTCTATCAATTTCTTCTTTCTTTTCGTTTTCCCCTATT
97946599 TTC
1 TTC
97946602 CTCTTTTTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.09, C:0.25, G:0.01, T:0.64
Consensus pattern (42 bp):
TTCTTTCTATCAATTTCTTCTTTCTTTTCGTTTTCCCCTATT
Found at i:97947188 original size:29 final size:29
Alignment explanation
Indices: 97947151--97947222 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
97947141 CTATGTGGAT
* *
97947151 CACATGATCATGTGGCAAACCATGT-AGGC
1 CACACGATCATGTGCCAAACCATGTGA-GC
* * *
97947180 CACACGATCGTATGCCAGACCATGTGAGC
1 CACACGATCATGTGCCAAACCATGTGAGC
*
97947209 CACACGAGCATGTG
1 CACACGATCATGTG
97947223 TAGGTTGTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.25, T:0.18
Consensus pattern (29 bp):
CACACGATCATGTGCCAAACCATGTGAGC
Found at i:97952772 original size:40 final size:40
Alignment explanation
Indices: 97952713--97952957 Score: 343
Period size: 40 Copynumber: 6.2 Consensus size: 40
97952703 AAACCAAGTA
* * *
97952713 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
97952752 CCTTCGAGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97952792 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
97952832 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
97952872 CCTTTGGGATTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
97952912 CCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
97952952 CCTTCG
1 CCTTCG
97952958 TTATCATCCG
Statistics
Matches: 185, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.07
40 172 0.93
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:97954913 original size:24 final size:24
Alignment explanation
Indices: 97954881--97954927 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
97954871 CCGACTAGGG
97954881 TCACATTAGGGCTGTCACATCCAA
1 TCACATTAGGGCTGTCACATCCAA
97954905 TCACATTAGGGCTGTCACATCCA
1 TCACATTAGGGCTGTCACATCCA
97954928 GTGAATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (24 bp):
TCACATTAGGGCTGTCACATCCAA
Found at i:97957720 original size:25 final size:28
Alignment explanation
Indices: 97957655--97957715 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
97957645 ATATATTTAG
97957655 ATATTCCTAAAAGATAATATCCCATAATAAT
1 ATATTCCT-AAA-A-AATATCCCATAATAAT
*
97957686 ATATTTCTAAAAAATATCCCATAATAAT
1 ATATTCCTAAAAAATATCCCATAATAAT
97957714 AT
1 AT
97957716 CCTAATAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 18 0.62
29 1 0.03
30 3 0.10
31 7 0.24
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (28 bp):
ATATTCCTAAAAAATATCCCATAATAAT
Found at i:97958826 original size:20 final size:20
Alignment explanation
Indices: 97958790--97958827 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
97958780 GGGTTTTAGG
*
97958790 ATTAATTTATTAAATTAACT
1 ATTAATTTATAAAATTAACT
97958810 ATTAATTT-TAAATATTAA
1 ATTAATTTATAAA-ATTAA
97958828 ATACTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATTTATAAAATTAACT
Found at i:97959181 original size:126 final size:126
Alignment explanation
Indices: 97958956--97959336 Score: 552
Period size: 126 Copynumber: 3.0 Consensus size: 126
97958946 TTTCTGCAAG
* * **
97958956 AATAATAT-TAAGCAGACGTTTCTGGAA-AAATAGTGTCGGAAAACGCTTCAAATAGGATGCACT
1 AATAAT-TCTAAGTAGACGTTTCT-GAACAAATAGTG-CCGAAAACGCTTCAAGCAGGATGCACT
* * *
97959019 ATCAGCAAAGTTTCT-AAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTGTAGAAA
63 ATCAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
97959082 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGCAGGATGCACTGTT
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTATC
* *
97959147 AGCAAAATTTCTGGAAAAAGCTCTCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * *
97959208 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGCCGAAAATGCTTCAAGCAGGATACACTATC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTATC
* *
97959273 AGTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
97959334 AAT
1 AAT
97959337 GAGGCTATAA
Statistics
Matches: 229, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
125 39 0.17
126 190 0.83
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (126 bp):
AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTATC
AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:97962315 original size:32 final size:32
Alignment explanation
Indices: 97962278--97962338 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
97962268 GAAACAATAT
97962278 AAAAAAGTTTGTACAAATATATTAAAAAATCA
1 AAAAAAGTTTGTACAAATATATTAAAAAATCA
97962310 AAAAAAGTTTGTACAAATATATTAAAAAA
1 AAAAAAGTTTGTACAAATATATTAAAAAA
97962339 ATTAATGTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.28
Consensus pattern (32 bp):
AAAAAAGTTTGTACAAATATATTAAAAAATCA
Found at i:97963336 original size:7 final size:7
Alignment explanation
Indices: 97963324--97963348 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97963314 TATTACTTAT
97963324 ATACATA
1 ATACATA
97963331 ATACATA
1 ATACATA
97963338 ATACATA
1 ATACATA
97963345 ATAC
1 ATAC
97963349 TAAATCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:97964438 original size:48 final size:48
Alignment explanation
Indices: 97964351--97964484 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 48
97964341 ATGCAAACAT
* * **
97964351 CATAAATGAAAAAAAAAT-AAGCAGTATTG-AAATTGTAATTATAA-TTG
1 CATAAATGAAAATAATATCAAATAGTATTGAAAATT-TAATTA-AATTTG
97964398 CATAAATGAATAA-AATATCAAATAGTATT-ACAAATTTAATTAAATTTG
1 CATAAATGAA-AATAATATCAAATAGTATTGA-AAATTTAATTAAATTTG
* *
97964446 CATAAATTAAAATAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAATAATATCAAATAGTATTGAAAATTTAA
97964485 AATTATCACT
Statistics
Matches: 75, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
47 18 0.24
48 51 0.68
49 6 0.08
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (48 bp):
CATAAATGAAAATAATATCAAATAGTATTGAAAATTTAATTAAATTTG
Found at i:97970843 original size:21 final size:22
Alignment explanation
Indices: 97970803--97970844 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
97970793 TATAAAATTA
*
97970803 TAAAATAATTTTTAAATTATTT
1 TAAAATAATATTTAAATTATTT
*
97970825 TAAAA-AATATTTAAGTTATT
1 TAAAATAATATTTAAATTATT
97970845 ATATAATTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAAATAATATTTAAATTATTT
Found at i:97971609 original size:16 final size:15
Alignment explanation
Indices: 97971584--97971639 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 15
97971574 TTGATTTAAT
*
97971584 TTATTTAATATATAA
1 TTATTAAATATATAA
97971599 TTATTAAA-ATAT-A
1 TTATTAAATATATAA
*
97971612 TT-TTTAATATATAA
1 TTATTAAATATATAA
*
97971626 TAATTTAAATATAT
1 TTA-TTAAATATAT
97971640 TTAGTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
12 4 0.12
13 7 0.21
14 6 0.18
15 7 0.21
16 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATTAAATATATAA
Found at i:97971610 original size:14 final size:14
Alignment explanation
Indices: 97971588--97971638 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
97971578 TTTAATTTAT
*
97971588 TTAATATATAATTA
1 TTAAAATATAATTA
*
97971602 TTAAAATAT-ATTT
1 TTAAAATATAATTA
* *
97971615 TTAATATATAATAA
1 TTAAAATATAATTA
*
97971629 TTTAAATATA
1 TTAAAATATA
97971639 TTTAGTTTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTAAAATATAATTA
Found at i:97971623 original size:27 final size:27
Alignment explanation
Indices: 97971587--97971641 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
97971577 ATTTAATTTA
*
97971587 TTTAATATATAATTATTAAAATATATT
1 TTTAATATATAATAATTAAAATATATT
*
97971614 TTTAATATATAATAATTTAAATATATT
1 TTTAATATATAATAATTAAAATATATT
97971641 T
1 T
97971642 AGTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TTTAATATATAATAATTAAAATATATT
Found at i:97972184 original size:18 final size:18
Alignment explanation
Indices: 97972163--97972211 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
97972153 ACTCAATCTG
97972163 TATTAATATTAAACAATA
1 TATTAATATTAAACAATA
*
97972181 TATTATAAATTAAAACAATA
1 TATTA-ATATT-AAACAATA
97972201 T-TT-ATATTAAA
1 TATTAATATTAAA
97972212 TAGTAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 3 0.11
17 4 0.15
18 5 0.19
19 6 0.22
20 9 0.33
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
TATTAATATTAAACAATA
Found at i:97975170 original size:29 final size:29
Alignment explanation
Indices: 97975137--97975225 Score: 128
Period size: 29 Copynumber: 3.0 Consensus size: 29
97975127 ACTAAATCCT
97975137 AGCCTTTGCCACCACCAACTCCACTAGCC
1 AGCCTTTGCCACCACCAACTCCACTAGCC
97975166 AGCCTTTGCCACCACCAACTCCACTAGCC
1 AGCCTTTGCCACCACCAACTCCACTAGCC
*
97975195 A-CAC-TTGCTCCACCACCTACTCCACTAGCC
1 AGC-CTTTG--CCACCACCAACTCCACTAGCC
97975225 A
1 A
97975226 CACTTGCTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
28 4 0.07
29 31 0.55
30 21 0.38
ACGTcount: A:0.25, C:0.48, G:0.09, T:0.18
Consensus pattern (29 bp):
AGCCTTTGCCACCACCAACTCCACTAGCC
Found at i:97975207 original size:18 final size:18
Alignment explanation
Indices: 97975184--97975237 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
97975174 CCACCACCAA
97975184 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
97975202 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
97975214 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
97975232 CTCCAC
1 CTCCAC
97975238 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:97975210 original size:30 final size:30
Alignment explanation
Indices: 97975145--97975242 Score: 148
Period size: 30 Copynumber: 3.3 Consensus size: 30
97975135 CTAGCCTTTG
97975145 CCACCACCAACTCCACTAGCCAGC-CTT--T
1 CCACCACCAACTCCACTAGCCA-CACTTGCT
97975173 GCCACCACCAACTCCACTAGCCACACTTGCT
1 -CCACCACCAACTCCACTAGCCACACTTGCT
*
97975204 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
97975234 CCACCACCA
1 CCACCACCA
97975243 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
28 1 0.02
29 25 0.39
30 37 0.58
31 1 0.02
ACGTcount: A:0.26, C:0.51, G:0.07, T:0.16
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:97975826 original size:27 final size:26
Alignment explanation
Indices: 97975786--97975857 Score: 94
Period size: 25 Copynumber: 2.8 Consensus size: 26
97975776 ATTCTAAATT
*
97975786 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
97975811 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
97975836 CTATATTATTTATATATATATT
1 CTATATTATGTATATATATATT
97975858 TTTTTTTTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.90
26 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:97975903 original size:22 final size:23
Alignment explanation
Indices: 97975873--97975939 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
97975863 TTTCTACATG
*
97975873 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
97975895 TTATATTATGTATGCATTTTTTACA
1 TTATATTATGTAT--ATATTTTACA
* *
97975920 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
97975940 TTTATATCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 12 0.32
23 6 0.16
24 7 0.19
25 12 0.32
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:97976030 original size:25 final size:24
Alignment explanation
Indices: 97976002--97976057 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
97975992 GTTATATTTT
*
97976002 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
97976027 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
97976050 CACTATTA
1 CACTATTA
97976058 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:97979302 original size:40 final size:39
Alignment explanation
Indices: 97979211--97979361 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
97979201 ATAACCACGT
* *
97979211 GCACAAATGCCTTCGGGTCTTAGCCTGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
97979251 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
97979291 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
97979331 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
97979362 TCATTCAATT
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 86 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:97981363 original size:24 final size:24
Alignment explanation
Indices: 97981336--97981420 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
97981326 ATAATTAATA
97981336 AAGATCATTCATGTATATTCAACC
1 AAGATCATTCATGTATATTCAACC
* * *
97981360 AAGACCATTCACGTATATTC-ACTT
1 AAGATCATTCATGTATATTCAAC-C
* * *
97981384 AAGGTCATT-ATGTATATTTAATC
1 AAGATCATTCATGTATATTCAACC
*
97981407 AAAATCATTCATGT
1 AAGATCATTCATGT
97981421 GTACTTGCAT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
23 17 0.36
24 30 0.64
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (24 bp):
AAGATCATTCATGTATATTCAACC
Found at i:97981628 original size:20 final size:20
Alignment explanation
Indices: 97981605--97981647 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
97981595 TCGAAGTGTG
*
97981605 AACAAAGGCACCAAAGTGCA
1 AACAAAGGAACCAAAGTGCA
* *
97981625 AACAAGGGAACCATAGTGCA
1 AACAAAGGAACCAAAGTGCA
97981645 AAC
1 AAC
97981648 CCATACAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.23, G:0.21, T:0.07
Consensus pattern (20 bp):
AACAAAGGAACCAAAGTGCA
Found at i:97985443 original size:38 final size:38
Alignment explanation
Indices: 97985338--97985455 Score: 121
Period size: 38 Copynumber: 3.1 Consensus size: 38
97985328 CAATGAGTCA
* * * ** *
97985338 ATAACCATTTCCATGCTGCCATTTCGTACAGCCAGTAG
1 ATAACCATTTCCATGGTGTCACTTCAAAGAGCCAGTAG
* **
97985376 ATAACCATTTTCATGGTGTCACTTCAAAGAGTTAGTAG
1 ATAACCATTTCCATGGTGTCACTTCAAAGAGCCAGTAG
**
97985414 ATAACCATTTCCATGGTGTTGC-TCTAAAGAGCCAGTAG
1 ATAACCATTTCCATGGTGTCACTTC-AAAGAGCCAGTAG
97985452 ATAA
1 ATAA
97985456 ATATTTTCAT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
37 2 0.03
38 63 0.97
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (38 bp):
ATAACCATTTCCATGGTGTCACTTCAAAGAGCCAGTAG
Found at i:97987653 original size:57 final size:58
Alignment explanation
Indices: 97987582--97987712 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 58
97987572 CATTTCCAGG
* * *
97987582 TCATTT-TTCATTTTCATTTTCATTTTAGACAAAACCA-AATTCATTTCCAAATGGTTC
1 TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAAAT-ATTTCCAAATCGTTC
* * * *
97987639 T-ATTTCTCCATTTTCATTTTCATTTTGGAGAAAACCATAAATATTTTCAAATCTTTC
1 TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAAATATTTCCAAATCGTTC
97987696 TCATTTCTCCATTTTCA
1 TCATTTCTCCATTTTCA
97987713 CCATTTCTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
56 4 0.06
57 42 0.66
58 18 0.28
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.47
Consensus pattern (58 bp):
TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAAATATTTCCAAATCGTTC
Done.