Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 315 of 425
Found at i:97988691 original size:140 final size:140
Alignment explanation
Indices: 97988390--97988808 Score: 486
Period size: 140 Copynumber: 3.0 Consensus size: 140
97988380 AGGCTTAAGA
* * * * *
97988390 CGACACTTTTGGGCCAACACTTTTCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAG
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAAACTTACCGACATACGCTTTGGCCAA
* ** * * * *
97988455 CTCTCTG-ATAAGAGTCAGGATATGCATGCCTAA-AGCAACCCTTAAATAAGTG-TCAGCTTTGA
66 CTCTTTGTATAAGAGTTTGGATATGCATGCCTAAGA-CAACACTTAAATAAGAGTTGA-CTTTGT
* *
97988517 CTAACACTATGG
129 CCAACACTATGC
* * *
97988529 CGACACTTTTGGGCCGATACTTTCCTCAGTGTTGGGATAAACTTACCGGCATACGCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAAACTTACCGACATACGCTTTGGCCAA
* ** *
97988594 CTCTTTGTATAAG-GTTTGGAATATGCATGCCTAAGATAATGCTTAAATAAGGGTTGACTTTGTC
66 CTCTTTGTATAAGAGTTTGG-ATATGCATGCCTAAGACAACACTTAAATAAGAGTTGACTTTGTC
97988658 CAACACTATGC
130 CAACACTATGC
* * * * *
97988669 CTACACATTTGGGTCGACACTTTCCTAACTGTTGGGATAAACTTACTGACATACGCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAAACTTACCGACATACGCTTTGGCCAA
* * * * * * *
97988734 ATCTTTGTATAAGAGTTGGGATATGCATGACTAAGGCAACAATTAAATAAGAGTCGATTTTGTCC
66 CTCTTTGTATAAGAGTTTGGATATGCATGCCTAAGACAACACTTAAATAAGAGTTGACTTTGTCC
97988799 AACACTATGC
131 AACACTATGC
97988809 TGACTTTTGT
Statistics
Matches: 237, Mismatches: 38, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
139 67 0.28
140 162 0.68
141 8 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (140 bp):
CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAAACTTACCGACATACGCTTTGGCCAA
CTCTTTGTATAAGAGTTTGGATATGCATGCCTAAGACAACACTTAAATAAGAGTTGACTTTGTCC
AACACTATGC
Found at i:97991232 original size:35 final size:35
Alignment explanation
Indices: 97991193--97991425 Score: 243
Period size: 35 Copynumber: 6.5 Consensus size: 35
97991183 CCTTAGATGT
97991193 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
* *
97991228 GTCTATCCCAACCTTTTTAAAAGTTTACCTTAGACAA
1 GTCTATCCCAACCTTTTT--AAGGTTGCCTTAGACAA
* *
97991265 GGTCTATACCAACCTTTTTAAGGTTGCCTTAGACAT
1 -GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
*
97991301 GTCTATTCCAACCTTTTTTAAAGGTTGCCTTAGACAA
1 GTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACAA
* * * ***
97991338 GGTCTATCCTAA-CTCTTTTAAGATTTCCTTAGATGG
1 -GTCTATCCCAACCT-TTTTAAGGTTGCCTTAGACAA
* * **
97991374 GTCTATCCCAACCTTTTTAAGGTTTCCCTAGACTG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
* *
97991409 GTCTGTCCCAACATTTT
1 GTCTATCCCAACCTTTT
97991426 ATAAATGTTG
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
35 72 0.43
36 34 0.20
37 36 0.21
38 26 0.15
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (35 bp):
GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
Found at i:97991305 original size:73 final size:72
Alignment explanation
Indices: 97991193--97991393 Score: 269
Period size: 73 Copynumber: 2.8 Consensus size: 72
97991183 CCTTAGATGT
*
97991193 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGTTTACCT
1 GTCTAT-CCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGGTTACCT
97991258 TAGACAAG
65 TAGACAAG
* * * *
97991266 GTCTATACCAACCTTTTTAAGGTTGCCTTAGACATGTCTATTCCAACCTTTTTTAAAGGTTGCCT
1 GTCTAT-CCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGGTTACCT
97991331 TAGACAAG
65 TAGACAAG
* * ***
97991339 GTCTATCCTAA-CTCTTTTAAGATTTCCTTAGATGGGTCTATCCCAACCTTTTTAA
1 GTCTATCC-AACCT-TTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAA
97991394 GGTTTCCCTA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
72 4 0.04
73 109 0.96
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.37
Consensus pattern (72 bp):
GTCTATCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGGTTACCTT
AGACAAG
Found at i:97991377 original size:108 final size:109
Alignment explanation
Indices: 97991183--97991437 Score: 306
Period size: 108 Copynumber: 2.3 Consensus size: 109
97991173 AAAAAAATCA
*
97991183 CCTTAGATGTGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTT
1 CCTTAGA-CTGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTT
97991246 AAAAGTTTACCTTAGACAAGGTCTATACCAACCTTTTTAAGGTTG
65 AAAAGTTTACCTTAGACAAGGTCTATACCAACCTTTTTAAGGTTG
* *
97991291 CCTTAGACATGTCTATTCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAA-CTCTT
1 CCTTAGAC-TGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAA-GTCTATCCCAACCT-TT
* ** * *
97991355 TTAAGA-TTT-CCTTAGA-TGGGTCTATCCCAACCTTTTTAAGGTTT
63 TTAAAAGTTTACCTTAGACAAGGTCTATACCAACCTTTTTAAGGTTG
* * * * *
97991399 CCCTAGACTGGTCTGTCCCAACATTTTATAAATGTTGCC
1 CCTTAGACT-GTCTATCCCAACCTTTTTTAAAGGTTGCC
97991438 ATTGACTAGG
Statistics
Matches: 127, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
107 1 0.01
108 75 0.59
109 12 0.09
110 22 0.17
111 17 0.13
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (109 bp):
CCTTAGACTGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTA
AAAGTTTACCTTAGACAAGGTCTATACCAACCTTTTTAAGGTTG
Found at i:97991712 original size:31 final size:31
Alignment explanation
Indices: 97991669--97991730 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
97991659 GTCACAAGCG
97991669 AATAAATATATAAACAAATTCAAGATTTATT
1 AATAAATATATAAACAAATTCAAGATTTATT
*
97991700 AATAAATCTATAAACAAATTCAAGATTTATT
1 AATAAATATATAAACAAATTCAAGATTTATT
97991731 CTTATTAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.35
Consensus pattern (31 bp):
AATAAATATATAAACAAATTCAAGATTTATT
Found at i:97994670 original size:27 final size:27
Alignment explanation
Indices: 97994630--97994687 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
97994620 AGAGCATACG
* * *
97994630 TGGGTCAAAGCCCATTACAATATCATT
1 TGGGTCAAAGCCCATAACAAAATCAAT
97994657 TGGGTCACAA-CCCATAACAAAATCAAT
1 TGGGTCA-AAGCCCATAACAAAATCAAT
97994684 TGGG
1 TGGG
97994688 CCTAACCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.24
Consensus pattern (27 bp):
TGGGTCAAAGCCCATAACAAAATCAAT
Found at i:97995518 original size:26 final size:26
Alignment explanation
Indices: 97995489--97995617 Score: 143
Period size: 26 Copynumber: 4.9 Consensus size: 26
97995479 TTGCCCTACA
* * *
97995489 GGGGTATTTCAATAATTTCACAAATT
1 GGGGTATTTCGATAATTTTACAAACT
*
97995515 GGGGTATTTCGGTAATTTTACAAACT
1 GGGGTATTTCGATAATTTTACAAACT
* *
97995541 GGAGGTATTTCGTTAATTTTACAAACCG
1 GG-GGTATTTCGATAATTTTACAAA-CT
97995569 GGGGTATTTCGATAATTTTACAAACAT
1 GGGGTATTTCGATAATTTTACAAAC-T
* * *
97995596 -AGGTATTTTGGTAATTTTACAA
1 GGGGTATTTCGATAATTTTACAA
97995618 TCCGAGGTCT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 44 0.49
27 42 0.47
28 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (26 bp):
GGGGTATTTCGATAATTTTACAAACT
Found at i:97995557 original size:27 final size:27
Alignment explanation
Indices: 97995491--97995617 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
97995481 GCCCTACAGG
* * *
97995491 GGTATTTCAATAATTTCACAAATTGG-
1 GGTATTTCGATAATTTTACAAACTGGA
*
97995517 GGTATTTCGGTAATTTTACAAACTGGA
1 GGTATTTCGATAATTTTACAAACTGGA
* * *
97995544 GGTATTTCGTTAATTTTACAAACCGGG
1 GGTATTTCGATAATTTTACAAACTGGA
97995571 GGTATTTCGATAATTTTACAAACAT--A
1 GGTATTTCGATAATTTTACAAAC-TGGA
* *
97995597 GGTATTTTGGTAATTTTACAA
1 GGTATTTCGATAATTTTACAA
97995618 TCCGAGGTCT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 41 0.47
27 46 0.53
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAACTGGA
Found at i:97997049 original size:31 final size:30
Alignment explanation
Indices: 97997005--97997063 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
97996995 CTTGATTTTC
97997005 TCCCTAAATCACTCA-ACATCCAATTCAACTT
1 TCCCTAAATCACTCATA-A-CCAATTCAACTT
97997036 TCCCTGAAA-CACTCATAACCAATTCAAC
1 TCCCT-AAATCACTCATAACCAATTCAAC
97997064 CTCAGAGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 10 0.38
31 12 0.46
32 4 0.15
ACGTcount: A:0.37, C:0.36, G:0.02, T:0.25
Consensus pattern (30 bp):
TCCCTAAATCACTCATAACCAATTCAACTT
Found at i:97999383 original size:26 final size:27
Alignment explanation
Indices: 97999345--97999446 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
97999335 ATTGCCCTAC
97999345 AGGGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
97999372 AGGGGT-TTTCGGTAATTTTACAAAC-
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
97999397 AGAGGGTATTTCGATAATTTTACAAATT
1 AG-GGGTATTTCGGTAATTTTACAAACT
* *
97999425 GGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTCGGTAATTTTAC
97999447 GATCCAGGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
25 2 0.03
26 23 0.34
27 41 0.61
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACT
Found at i:97999415 original size:53 final size:53
Alignment explanation
Indices: 97999343--97999446 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 53
97999333 TCATTGCCCT
*
97999343 ACAGGGGTATTTCGGTAATTTTACAAACTAGGGGT-TTTCGGTAATTTTACAA
1 ACAGGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAA
* * *
97999395 ACAGAGGGTATTTCGATAATTTTACAAATTGGGGGTATTTTGGTAATTTTAC
1 ACAG-GGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTAC
97999447 GATCCAGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 4 0.09
53 28 0.61
54 14 0.30
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (53 bp):
ACAGGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAA
Found at i:98003570 original size:68 final size:67
Alignment explanation
Indices: 98003488--98003633 Score: 256
Period size: 68 Copynumber: 2.2 Consensus size: 67
98003478 TCACTCATGC
*
98003488 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACA
1 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAAGGG-TACATCCCGTATCACACA
98003553 TAT
65 TAT
*
98003556 GACCTAGCTACATTTATCTCTCACGTCGCTCTCTTGTCTACAAGGGTACATCCCGTATCACACAT
1 GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAAGGGTACATCCCGTATCACACAT
*
98003621 GT
66 AT
98003623 GACCTAGCTAC
1 GACCTAGCTAC
98003634 TATATAGTAT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
67 31 0.41
68 44 0.59
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (67 bp):
GACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAAGGGTACATCCCGTATCACACAT
AT
Found at i:98005511 original size:22 final size:22
Alignment explanation
Indices: 98005486--98005535 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
98005476 TGGCACAAAT
98005486 CCATAATCAAGATAGCACAGAG
1 CCATAATCAAGATAGCACAGAG
* * * * *
98005508 CCATATTTAGGCTGGCACAGAG
1 CCATAATCAAGATAGCACAGAG
98005530 CCATAA
1 CCATAA
98005536 ACAGATTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (22 bp):
CCATAATCAAGATAGCACAGAG
Found at i:98005977 original size:54 final size:54
Alignment explanation
Indices: 98005919--98006024 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
98005909 GGTATTTTGA
98005919 TAATTTTACAAACCGAGGGTATTTC-GATAATTTTACAAACT-GGGGCTATTTCAT
1 TAATTTTACAAACCGAGGGTATTTCAG-TAATTTTACAAACTAGGGG-TATTTCAT
* *
98005973 TAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTC
1 TAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTC
98006025 TATAATATCC
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
54 43 0.90
55 5 0.10
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (54 bp):
TAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTCAT
Found at i:98006030 original size:27 final size:25
Alignment explanation
Indices: 98005907--98006030 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 25
98005897 TTTCCCTACC
* *
98005907 GGGGTATTTTGATAATTTTACAAACC
1 GGGGTA-TTTCATAATTTTACAAACT
98005933 GAGGGTATTTCGATAATTTTACAAACT
1 G-GGGTATTTC-ATAATTTTACAAACT
98005960 GGGGCTATTTCATTAATTTTACAAACT
1 GGGG-TATTTCA-TAATTTTACAAACT
*
98005987 GAGGGTATTTCAGTAATTTTACAAATT
1 G-GGGTATTTCA-TAATTTTACAAACT
98006014 AGGGGTATTTCTATAAT
1 -GGGGTATTTC-ATAAT
98006031 ATCCCGAATT
Statistics
Matches: 87, Mismatches: 4, Indels: 13
0.84 0.04 0.12
Matches are distributed among these distances:
26 8 0.09
27 74 0.85
28 5 0.06
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (25 bp):
GGGGTATTTCATAATTTTACAAACT
Found at i:98007221 original size:14 final size:16
Alignment explanation
Indices: 98007202--98007240 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
98007192 AAGAAAATGA
*
98007202 TGATATATGACA-A-G
1 TGATATATGAAATATG
98007216 TGATATATGAAATATG
1 TGATATATGAAATATG
98007232 TGATATATG
1 TGATATATG
98007241 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (16 bp):
TGATATATGAAATATG
Found at i:98007663 original size:51 final size:49
Alignment explanation
Indices: 98007541--98007735 Score: 237
Period size: 49 Copynumber: 3.9 Consensus size: 49
98007531 ACTATTGTGA
* * *
98007541 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATT
* * *
98007590 GGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAA-T-T
* * * ** *
98007641 GATCACGTCTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATT
* * *
98007690 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATA
98007736 GCTTCAGCTA
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.66
50 2 0.02
51 39 0.32
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATT
Found at i:98007720 original size:100 final size:100
Alignment explanation
Indices: 98007543--98007730 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
98007533 TATTGTGAGG
* * *
98007543 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
1 TCACGTCTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
98007608 AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
* *
98007643 TCACGTCTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTCTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
*
98007708 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAAGCTACTATGCGTACC
98007731 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (100 bp):
TCACGTCTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
Found at i:98011047 original size:3 final size:3
Alignment explanation
Indices: 98011039--98011081 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
98011029 GATATAGTTT
98011039 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
98011082 CAAAAGCAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:98011182 original size:4 final size:4
Alignment explanation
Indices: 98011173--98011198 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
98011163 AGTAAGGAAT
98011173 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
98011199 AGCCTTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:98015706 original size:50 final size:48
Alignment explanation
Indices: 98015586--98015853 Score: 213
Period size: 47 Copynumber: 5.7 Consensus size: 48
98015576 GTATAATGTC
98015586 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTTAAGTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTTAAGTCA
* **
98015634 -ATGCCATGTCCCAGATATGGTCTTACACT-GACTCTCACGTATTCGTGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCACGT-TAAGT-CA
* * * * *
98015683 GATGCCATGTCCCAGACATGGTCTTATACTAACACATCATG-T-AGAC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACGTTAAGTCA
* *
98015729 GATG-CATATCCCAAACAT-GTCTTACACTAGCTCT--CGTCTCAATGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGT-T-AA-GTCA
* * * * * *
98015775 GATGCCATGTCCCAAACATGGTCTTAGACTGGCTCT--CGTAATATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGT--TAAGTCA
98015823 GATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
98015854 ACACAAATGA
Statistics
Matches: 179, Mismatches: 26, Indels: 32
0.76 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
43 2 0.01
44 12 0.07
45 13 0.07
46 22 0.12
47 66 0.37
48 26 0.15
49 4 0.02
50 29 0.16
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTTAAGTCA
Found at i:98029399 original size:19 final size:20
Alignment explanation
Indices: 98029375--98029414 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
98029365 ACTAGAAGCA
98029375 TCCCACAATTT-TCAT-TATT
1 TCCCAC-ATTTATCATATATT
98029394 TCCCACATTTATCATATATT
1 TCCCACATTTATCATATATT
98029414 T
1 T
98029415 TACAACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (20 bp):
TCCCACATTTATCATATATT
Found at i:98031216 original size:20 final size:21
Alignment explanation
Indices: 98031188--98031226 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
98031178 ACAAAGATGA
*
98031188 CTTATAATT-TAATTTAATTT
1 CTTAGAATTATAATTTAATTT
*
98031208 CTTAGAATTATTATTTAAT
1 CTTAGAATTATAATTTAAT
98031227 GAATTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (21 bp):
CTTAGAATTATAATTTAATTT
Found at i:98031403 original size:17 final size:18
Alignment explanation
Indices: 98031371--98031404 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98031361 TAGAATTGGG
98031371 TTGAAAAATATAATTTAA
1 TTGAAAAATATAATTTAA
*
98031389 TTGAGAAAT-TAATTTA
1 TTGAAAAATATAATTTA
98031405 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAAAAATATAATTTAA
Found at i:98031416 original size:18 final size:17
Alignment explanation
Indices: 98031395--98031428 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
98031385 TTAATTGAGA
98031395 AATTAATTTAGTTAATTT
1 AATTAATTTA-TTAATTT
98031413 AATTAATTTATTAATT
1 AATTAATTTATTAATT
98031429 AATATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
AATTAATTTATTAATTT
Found at i:98035429 original size:28 final size:27
Alignment explanation
Indices: 98035367--98035420 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
98035357 AGAAGATGGA
98035367 CACATTTTTGCTTTGATTTTATCTTTT
1 CACATTTTTGCTTTGATTTTATCTTTT
*
98035394 CACATTTTTGCTTTGATTTTCTCTTTT
1 CACATTTTTGCTTTGATTTTATCTTTT
98035421 TATTCTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63
Consensus pattern (27 bp):
CACATTTTTGCTTTGATTTTATCTTTT
Found at i:98042720 original size:27 final size:27
Alignment explanation
Indices: 98042678--98043049 Score: 340
Period size: 27 Copynumber: 13.7 Consensus size: 27
98042668 TTTAACTACA
*
98042678 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
98042705 GGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
98042732 AGGGTATTTTGGTAA-TTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
98042758 ATAGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
98042785 AGGGTGTTTCAATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
98042812 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
98042839 AGGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
98042865 AGGGTATTTCGGTAGTTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
98042892 AGGGTATTTCAGTAGTTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
98042918 AGGGTATTTCGATATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCG--------GTAATTTTACAAATCG
** *
98042953 AGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
98042979 AGGGCATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
98043006 A-GGTGTTTCGAAAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
98043032 AGCGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
98043050 CTTTTTATAA
Statistics
Matches: 277, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
26 99 0.36
27 155 0.56
34 8 0.03
35 15 0.05
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:98042911 original size:53 final size:53
Alignment explanation
Indices: 98042678--98043049 Score: 356
Period size: 53 Copynumber: 6.8 Consensus size: 53
98042668 TTTAACTACA
* * * *
98042678 AGGGTATTTC-GATAATTTTACAAATCGGGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCG
** * ** *
98042732 AGGGTATTTTGGTAATTT-ATAAATCGATAGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTCA-CAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * *
98042785 AGGGTGTTTCAATAATTTCACAAATCGGGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCG
* * *
98042839 AGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCGGTAGTTTTACAAACCG
1 AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCG
*
98042892 AGGGTATTTCAGTAGTTTCACAATCGAGGGTATTTCGATATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTCG--------GTAATTTTACAAATCG
* * *
98042953 AGGGTATTTCAATAATTTCACAATCGAGGGCATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * *
98043006 A-GGTGTTTC-GAAAATTTTACAAATCGAGCGTATTTCAGTAATTT
1 AGGGTATTTCAG-TAATTTCAC-AATCGAGGGTATTTCGGTAATTT
98043050 CTTTTTATAA
Statistics
Matches: 265, Mismatches: 39, Indels: 29
0.80 0.12 0.09
Matches are distributed among these distances:
52 14 0.05
53 140 0.53
54 63 0.24
55 1 0.00
61 47 0.18
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCG
Found at i:98042939 original size:34 final size:35
Alignment explanation
Indices: 98042896--98042972 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
98042886 AAACCGAGGG
* *
98042896 TATTTCAGTAGTTTCAC-AATCGAGGGTATTTCGA
1 TATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
*
98042930 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAA
1 TATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
98042965 TAATTTCA
1 T-ATTTCA
98042973 CAATCGAGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 15 0.39
35 17 0.45
36 6 0.16
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (35 bp):
TATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
Found at i:98042972 original size:61 final size:61
Alignment explanation
Indices: 98042869--98042987 Score: 184
Period size: 61 Copynumber: 2.0 Consensus size: 61
98042859 CAATCGAGGG
* * * * *
98042869 TATTTCGGTAGTTTTACAAACCGAGGGTATTTCAGTAGTTTCACAATCGAGGGTATTTCGA
1 TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGA
*
98042930 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTT
1 TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTT
98042988 TGGTAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (61 bp):
TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGA
Found at i:98043031 original size:114 final size:114
Alignment explanation
Indices: 98042816--98043041 Score: 305
Period size: 114 Copynumber: 2.0 Consensus size: 114
98042806 AAATCGGGGG
* * * *
98042816 TATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCGGTAGT
1 TATTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAAT
** *
98042881 TTTACAAACCGAGGGTATTTCAGTAGTTTCACAATCGAGGGTATTTCGA
66 TTTACAAACCGAGGGTATTTCAAAAGTTTCACAATCGAGCGTATTTCGA
*
98042930 TATTTC-AGTAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTTGGTAA
1 TATTTCGA-TAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAA
* * *
98042994 TTTTACAAATCGA-GGTGTTTCGAAAA-TTTTACAAATCGAGCGTATTTC
65 TTTTACAAACCGAGGGTATTTC-AAAAGTTTCAC-AATCGAGCGTATTTC
98043042 AGTAATTTCT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
113 13 0.13
114 85 0.87
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (114 bp):
TATTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAAT
TTTACAAACCGAGGGTATTTCAAAAGTTTCACAATCGAGCGTATTTCGA
Found at i:98043402 original size:28 final size:28
Alignment explanation
Indices: 98043366--98043457 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
98043356 TGGCCCCTTT
* * *
98043366 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
98043394 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * *
98043422 AGGCCCAATCATATTCATATAGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
98043450 AGCCCCAA
1 AGGCCCAA
98043458 CTACTTCCCA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.28, C:0.36, G:0.14, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:98044859 original size:35 final size:35
Alignment explanation
Indices: 98044814--98044897 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
98044804 AATCGACTCA
* *
98044814 AAAAAGGTTGGGATAGACTATTCT-ATGCAAACCTT
1 AAAAAGGTTGGGATAGACTAGTCTAAAG-AAACCTT
* *
98044849 AAAAAGGTTGGGATAGACTCGTCTAAAGTAACCTT
1 AAAAAGGTTGGGATAGACTAGTCTAAAGAAACCTT
98044884 AAAAAGGTTGGGAT
1 AAAAAGGTTGGGAT
98044898 GGGCCTTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 42 0.95
36 2 0.05
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACTAGTCTAAAGAAACCTT
Found at i:98047899 original size:90 final size:90
Alignment explanation
Indices: 98047744--98047924 Score: 308
Period size: 90 Copynumber: 2.0 Consensus size: 90
98047734 AACCCGACCC
* *
98047744 AACCACATCCCTAATTATTAATGAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
1 AACCACATCCCTAATAATTAATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
*
98047809 TGCTTTTTAATTGATGAAAGCAAAT
66 TGCTTTTCAATTGATGAAAGCAAAT
* * *
98047834 AACCACATCCCTAATAATTGATAAAGGTTTTAGGGATTGTACAACCACTTCTTCCTTCATTGTCT
1 AACCACATCCCTAATAATTAATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
98047899 TGCTTTTCAATTGATGAAAGCAAAT
66 TGCTTTTCAATTGATGAAAGCAAAT
98047924 A
1 A
98047925 TCATGAGTTA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (90 bp):
AACCACATCCCTAATAATTAATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
TGCTTTTCAATTGATGAAAGCAAAT
Found at i:98048084 original size:82 final size:84
Alignment explanation
Indices: 98047969--98048133 Score: 246
Period size: 82 Copynumber: 2.0 Consensus size: 84
98047959 TTTTTTCCTA
* * *
98047969 AATCGATTGTTTGTTGTTTTAAATCAGTTCTTTTCTTCTTTG-ATCAATTGTTTTTTGTTTTAAA
1 AATCAATTGCTTGTTGTTTTAAATCAGTTCTTTTCTTCTTTGAATCAATTGTTTGTTGTTTTAAA
*
98048033 TAAATTTTTG-CTTCTTTG
66 TAAATTCTTGCCTTCTTTG
*
98048051 AATCAATTGCTTGTTGTTTTAAAT-TGATTCTTTTCTTCTTTGAATCAATTGTTTGTTGTTTTAA
1 AATCAATTGCTTGTTGTTTTAAATCAG-TTCTTTTCTTCTTTGAATCAATTGTTTGTTGTTTTAA
*
98048115 ATAGATTCTTGCCTTCTTT
65 ATAAATTCTTGCCTTCTTT
98048134 TGTGACAGCC
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 1 0.01
82 37 0.50
83 29 0.39
84 7 0.09
ACGTcount: A:0.20, C:0.11, G:0.12, T:0.57
Consensus pattern (84 bp):
AATCAATTGCTTGTTGTTTTAAATCAGTTCTTTTCTTCTTTGAATCAATTGTTTGTTGTTTTAAA
TAAATTCTTGCCTTCTTTG
Found at i:98048100 original size:42 final size:42
Alignment explanation
Indices: 98047969--98048133 Score: 228
Period size: 42 Copynumber: 4.0 Consensus size: 42
98047959 TTTTTTCCTA
*
98047969 AATCGATTGTTTGTTGTTTTAAATCAG-TTCTTTTCTTCTTTG
1 AATCAATTGTTTGTTGTTTTAAAT-AGATTCTTTTCTTCTTTG
* * *
98048011 -ATCAATTGTTTTTTGTTTTAAATAAATT-TTTGCTTCTTTG
1 AATCAATTGTTTGTTGTTTTAAATAGATTCTTTTCTTCTTTG
* *
98048051 AATCAATTGCTTGTTGTTTTAAATTGATTCTTTTCTTCTTTG
1 AATCAATTGTTTGTTGTTTTAAATAGATTCTTTTCTTCTTTG
**
98048093 AATCAATTGTTTGTTGTTTTAAATAGATTCTTGCCTTCTTT
1 AATCAATTGTTTGTTGTTTTAAATAGATTCTTTTCTTCTTT
98048134 TGTGACAGCC
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 12 0.11
41 47 0.44
42 48 0.45
ACGTcount: A:0.20, C:0.11, G:0.12, T:0.57
Consensus pattern (42 bp):
AATCAATTGTTTGTTGTTTTAAATAGATTCTTTTCTTCTTTG
Found at i:98049973 original size:40 final size:39
Alignment explanation
Indices: 98049808--98049991 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
98049798 AAATTGAATG
* * *
98049808 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
98049848 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
98049888 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
98049928 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
98049967 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
98049992 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:98050016 original size:80 final size:81
Alignment explanation
Indices: 98049848--98050036 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
98049838 GCTGGAAATT
* * * *
98049848 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
98049913 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
98049929 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
98049992 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
98050008 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
98050037 ATCGACTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:98051502 original size:45 final size:44
Alignment explanation
Indices: 98051449--98051550 Score: 159
Period size: 45 Copynumber: 2.3 Consensus size: 44
98051439 CTTTAAACCA
*
98051449 ATTCATTATTGTTGTTTTAAATAGATTCTTTGCTTCTTTGAATCG
1 ATTCATTATTGTTGTTTTAAATAGATTCTTTGCTTATTT-AATCG
** *
98051494 ATTCATTATTGTTGTTTTAAATCTATTCTTTGCTTATTTAATTG
1 ATTCATTATTGTTGTTTTAAATAGATTCTTTGCTTATTTAATCG
98051538 ATTCATTATTGTT
1 ATTCATTATTGTT
98051551 TGAAATGTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 17 0.32
45 36 0.68
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.57
Consensus pattern (44 bp):
ATTCATTATTGTTGTTTTAAATAGATTCTTTGCTTATTTAATCG
Found at i:98051521 original size:24 final size:24
Alignment explanation
Indices: 98051440--98051521 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
98051430 GTGTTACATC
* *
98051440 TTTAAACCAATTCATTATTGTTGT
1 TTTAAATCGATTCATTATTGTTGT
* *
98051464 TTTAAATAGATTC--T-TTGCTT-C
1 TTTAAATCGATTCATTATTG-TTGT
*
98051485 TTTGAATCGATTCATTATTGTTGT
1 TTTAAATCGATTCATTATTGTTGT
*
98051509 TTTAAATCTATTC
1 TTTAAATCGATTC
98051522 TTTGCTTATT
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
21 14 0.32
22 3 0.07
23 3 0.07
24 24 0.55
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.52
Consensus pattern (24 bp):
TTTAAATCGATTCATTATTGTTGT
Found at i:98052255 original size:21 final size:21
Alignment explanation
Indices: 98052231--98052297 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
98052221 TTTTTTTTGC
*
98052231 TAAATGGATTGTTTGTTATTT
1 TAAATCGATTGTTTGTTATTT
* * *
98052252 TAAATCGATTCTTTTCTTCTTT
1 TAAATCGATT-GTTTGTTATTT
*
98052274 T-AATCGATTGTTTGTTGTTT
1 TAAATCGATTGTTTGTTATTT
98052294 TAAA
1 TAAA
98052298 CAAATTATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 9 0.24
21 19 0.51
22 9 0.24
ACGTcount: A:0.22, C:0.07, G:0.13, T:0.57
Consensus pattern (21 bp):
TAAATCGATTGTTTGTTATTT
Found at i:98052296 original size:42 final size:42
Alignment explanation
Indices: 98052237--98052445 Score: 188
Period size: 45 Copynumber: 4.8 Consensus size: 42
98052227 TTGCTAAATG
* * * *
98052237 GATTGTTTGTTATTTTAAATCGATTCTTTTCTTCTTTTAATC
1 GATTTTTTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATC
* * *
98052279 GATTGTTTGTTGTTTTAAA-CAAATTATTTGCTTCTTTGAATC
1 GATTTTTTGTTGTTTTAAATC-GATTCTTTGCTTCTTTGAATC
* *
98052321 AATTCATTATTGTTGTTTTAAATCGTTTCTTTAG-TTCTTTGAATC
1 GATT--TT-TTGTTGTTTTAAATCGATTCTTT-GCTTCTTTGAATC
* * *
98052366 GATTTTTTTGTTGTTTTAAATTGATCCTTTTCTTCTTTGAATC
1 GA-TTTTTTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATC
* * *
98052409 AATTTTTTATTTTTGTTTTAAATTGATTCTTTGCTTC
1 GA--TTTT-TTGTTGTTTTAAATCGATTCTTTGCTTC
98052446 AAAAGCCCGT
Statistics
Matches: 138, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 38 0.28
43 32 0.23
44 8 0.06
45 55 0.40
46 4 0.03
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.58
Consensus pattern (42 bp):
GATTTTTTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATC
Found at i:98052419 original size:88 final size:87
Alignment explanation
Indices: 98052243--98052445 Score: 244
Period size: 88 Copynumber: 2.3 Consensus size: 87
98052233 AATGGATTGT
* * * *
98052243 TTGTTATTTTAAATCGATTCTTTTCTTCTTTTAATCGATTGTTTGTTGTTTTAAACAAATTATTT
1 TTGTTGTTTTAAATCGATTCTTTACTTCTTTGAATCGATTGTTTGTTGTTTTAAACAAATCATTT
98052308 GCTTCTTTGAATCAATTCATTA
66 GCTTCTTTGAATCAATTCATTA
* * * *** *
98052330 TTGTTGTTTTAAATCGTTTCTTTAGTTCTTTGAATCGATTTTTTTGTTGTTTTAAATTGATCCTT
1 TTGTTGTTTTAAATCGATTCTTTACTTCTTTGAATCGA-TTGTTTGTTGTTTTAAACAAATCATT
* **
98052395 TTCTTCTTTGAATCAATTTTTTA
65 TGCTTCTTTGAATCAATTCATTA
* * *
98052418 TTTTTGTTTTAAATTGATTCTTTGCTTC
1 TTGTTGTTTTAAATCGATTCTTTACTTC
98052446 AAAAGCCCGT
Statistics
Matches: 96, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
87 33 0.34
88 63 0.66
ACGTcount: A:0.20, C:0.11, G:0.10, T:0.59
Consensus pattern (87 bp):
TTGTTGTTTTAAATCGATTCTTTACTTCTTTGAATCGATTGTTTGTTGTTTTAAACAAATCATTT
GCTTCTTTGAATCAATTCATTA
Found at i:98055855 original size:16 final size:16
Alignment explanation
Indices: 98055804--98055855 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
98055794 TATGGATCTG
*
98055804 CAAAA-GCCGAAATGT
1 CAAAATGCCGAAAAGT
*
98055819 CAAAATGCCAAAAAGT
1 CAAAATGCCGAAAAGT
* *
98055835 TAAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGT
98055851 CAAAA
1 CAAAA
98055856 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 5 0.17
16 25 0.83
ACGTcount: A:0.54, C:0.19, G:0.15, T:0.12
Consensus pattern (16 bp):
CAAAATGCCGAAAAGT
Found at i:98056177 original size:28 final size:29
Alignment explanation
Indices: 98056063--98056177 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
98056053 GTGAGCATGA
* *
98056063 ATATGAATGTGA-CTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
98056091 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
98056120 ATATTCAGGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
98056149 ATATGAATATGA-TTGGGCTTAATGTGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
98056177 A
1 A
98056178 GATACAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 26 0.35
29 48 0.65
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:98058139 original size:47 final size:47
Alignment explanation
Indices: 98058066--98058193 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
98058056 AATCGATAAT
* * * *
98058066 TACCTATACCATG-GCCATCAGCCAAATTAAGGTAACTTATCCCGGAG
1 TACCTATACCATGACCCGT-AGCCAAATTAAGGTAACTCATCCCGGAA
* * * *
98058113 TACTTATACCATGACCCGTAGCCAAATTAAGGTAACTCCTCTCTGAA
1 TACCTATACCATGACCCGTAGCCAAATTAAGGTAACTCATCCCGGAA
* * *
98058160 TACCTATACCATGGCCTGTAGCCAAATCAAGGTA
1 TACCTATACCATGACCCGTAGCCAAATTAAGGTA
98058194 TCATTCACAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 65 0.96
48 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGACCCGTAGCCAAATTAAGGTAACTCATCCCGGAA
Found at i:98060829 original size:39 final size:39
Alignment explanation
Indices: 98060772--98060847 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
98060762 AGTGCTAGAG
*
98060772 GATGTTTTAGTTATGGTAAACGAACTAATTTTTCCTACA
1 GATGTTTTAGTTAAGGTAAACGAACTAATTTTTCCTACA
*
98060811 GATGTTTTTGTTAAGGTAAACGAACTAATTTTTCCTA
1 GATGTTTTAGTTAAGGTAAACGAACTAATTTTTCCTA
98060848 TAGACTTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (39 bp):
GATGTTTTAGTTAAGGTAAACGAACTAATTTTTCCTACA
Found at i:98065699 original size:20 final size:22
Alignment explanation
Indices: 98065674--98065715 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
98065664 GTGGCCGGAG
98065674 CCCTCT-C-TCCTCCCCTCTCC
1 CCCTCTCCTTCCTCCCCTCTCC
*
98065694 CCCTCTCCTTTCTCCCCTCTCC
1 CCCTCTCCTTCCTCCCCTCTCC
98065716 TTTTCTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (22 bp):
CCCTCTCCTTCCTCCCCTCTCC
Found at i:98066597 original size:19 final size:19
Alignment explanation
Indices: 98066550--98066602 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
98066540 TATTATTCAC
*
98066550 TTTCTATATTTTTATCATTA
1 TTTCT-TATTTTTATCACTA
* *
98066570 TTATATTATTTTTGTCACTA
1 TT-TCTTATTTTTATCACTA
*
98066590 TTTCTTATCTTTA
1 TTTCTTATTTTTA
98066603 CTTATATATA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 8 0.31
20 16 0.62
21 2 0.08
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTTATTTTTATCACTA
Found at i:98079344 original size:73 final size:76
Alignment explanation
Indices: 98079225--98079379 Score: 201
Period size: 73 Copynumber: 2.1 Consensus size: 76
98079215 TCTGCTTTTT
* * **
98079225 AATTTCATGTTTTCCAAGAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTT
1 AATTTCATGTTTTCCAAGAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACACT
98079290 GAGGTAATTTC
66 GAGGTAATTTC
* * *
98079301 AATTT-ATG-TTT-CAA-AAAATCAACTCATTATTGCGAGAAGTGAGTTGAGCCTCAGGGCACAC
1 AATTTCATGTTTTCCAAGAAAATCAACTCA-TATTGCAAGAAGTGAGTTGAGCCTCAAGACACAC
*
98079362 TGAGGTATTTTC
65 TGAGGTAATTTC
98079374 AATTTC
1 AATTTC
98079380 TGCTTTTTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
72 11 0.16
73 47 0.68
74 3 0.04
75 3 0.04
76 5 0.07
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (76 bp):
AATTTCATGTTTTCCAAGAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACACT
GAGGTAATTTC
Found at i:98079421 original size:163 final size:161
Alignment explanation
Indices: 98079151--98079538 Score: 654
Period size: 163 Copynumber: 2.4 Consensus size: 161
98079141 TTGTTTTTTC
*
98079151 CAAAAATCAACTCATATGGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
98079216 CTGCTTTTTAATTTCATGTTTTCCAAGAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCA
66 CTGCTTTTTAATTTCATGTTTTCCAAGAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCA
98079281 AGACACGTTGAGGTAATTTCAATTTATGTTT
131 AGACACGTTGAGGTAATTTCAATTTATGTTT
* *
98079312 CAAAAAATCAACTCATTATTGCGAGAAGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAAT
1 C-AAAAATCAACTCA-TATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
*
98079377 TTCTGCTTTTTAA-TTCATGTTTTCCAA-AAGAATCAGCTTCATATTGCGAGAGGTGAGTTGAGC
64 TTCTGCTTTTTAATTTCATGTTTTCCAAGAA-AATCAGC-TCATATTGCAAGAGGTGAGTTGAGC
98079440 CTCAAGACACGTTGAGGTAATTTCAATTTATGTTT
127 CTCAAGACACGTTGAGGTAATTTCAATTTATGTTT
* * * *
98079475 CAAAAATCAGCTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
98079539 CCTATTAAAT
Statistics
Matches: 214, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
161 48 0.22
162 46 0.21
163 120 0.56
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (161 bp):
CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTTCATGTTTTCCAAGAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:98079700 original size:145 final size:146
Alignment explanation
Indices: 98079415--98079808 Score: 451
Period size: 145 Copynumber: 2.7 Consensus size: 146
98079405 AGAATCAGCT
* *
98079415 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT-ATGTTTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCATGTTTCAAA
* * *
98079479 AATCAGCTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCTAT
66 AATCAACTCATATCGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTCCTAT
**
98079544 TAAATCTAAAATCAAC
131 TAAATAAAAAATCAAC
* * ** * *
98079560 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCAAGGT-ATTTTAATTTCAT-TTT-TAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCATGTTTCAAA
** * * * *
98079622 TTTCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCCGT
66 AATCAACTCATATCGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAA-TTCC-T
98079687 -TGTCAAA-AAAAAATCAAC
129 AT-T-AAATAAAAAATCAAC
* * *
98079705 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC-CGTTGTCAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCATGTT-TC--
* * *
98079769 AAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAG
63 AAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCAG
98079809 TTCGCATGCT
Statistics
Matches: 205, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
143 51 0.25
144 17 0.08
145 87 0.42
146 15 0.07
147 1 0.00
150 34 0.17
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (146 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCATGTTTCAAA
AATCAACTCATATCGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTCCTAT
TAAATAAAAAATCAAC
Found at i:98079799 original size:219 final size:212
Alignment explanation
Indices: 98079415--98079806 Score: 545
Period size: 219 Copynumber: 1.8 Consensus size: 212
98079405 AGAATCAGCT
* * *
98079415 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
1 TCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTACGTTTCAAAA
* * * *
98079480 ATCAGCTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCTATT
66 ATCAACTCATATCGCGAAAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTCCTATT
* *
98079545 AAATCTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCAAGGTATTTTAA
131 AAA--TAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCGGGGCACGCCAAGGTATTTTAA
98079610 TTTCATTTTTAATTTCAAC
194 TTTCATTTTTAATTTCAAC
* * *
98079629 TCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCCGTTGTCAAA
1 TCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTACGTT-TC---
* *
98079694 AAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
62 -AAAAATCAACTCATATCGCGAAAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAA-TT
98079759 CCGT-TGTCAAA-AAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTC
125 CC-TAT-T-AAATAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTC
98079807 AGTTCGCATG
Statistics
Matches: 155, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
214 53 0.34
215 2 0.01
219 90 0.58
220 5 0.03
221 2 0.01
222 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (212 bp):
TCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTACGTTTCAAAA
ATCAACTCATATCGCGAAAAGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTCCTATT
AAATAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCGGGGCACGCCAAGGTATTTTAATT
TCATTTTTAATTTCAAC
Found at i:98079821 original size:76 final size:75
Alignment explanation
Indices: 98079415--98079808 Score: 386
Period size: 74 Copynumber: 5.4 Consensus size: 75
98079405 AGAATCAGCT
* * * * **
98079415 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTT-TC---
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTCAAA
*
98079476 AAAAATCAGC
66 AAAAATCAAC
* * * * *
98079486 TCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAA-TTCC-TAT-T-AA
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGT-TGTCAA
*
98079547 ATCTAAAATCAAC
65 A--AAAAATCAAC
* * * * ** * * *
98079560 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCAAGGT-ATTTTAATTT-CATT-T---T
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTCAAA
* **
98079619 TAATTTCAAC
66 AAAAATCAAC
* * * *
98079629 TCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCCGTTGTCAAA
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTC-AA
98079694 AAAAAATCAAC
65 AAAAAATCAAC
98079705 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTC-AA
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTCAAA
98079769 AAAAATCAAC
66 AAAAATCAAC
98079779 TCATATTGCGAAAAGTGAGTTGAGCCTCAG
1 TCATATTGCGAAAAGTGAGTTGAGCCTCAG
98079809 TTCGCATGCT
Statistics
Matches: 274, Mismatches: 34, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
69 47 0.17
70 14 0.05
71 47 0.17
72 1 0.00
73 9 0.03
74 91 0.33
76 65 0.24
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (75 bp):
TCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCGTTGTCAAA
AAAAATCAAC
Found at i:98089728 original size:3 final size:3
Alignment explanation
Indices: 98089722--98089748 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98089712 AAGCAAAAAA
98089722 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
98089749 TTTATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:98099126 original size:49 final size:48
Alignment explanation
Indices: 98099054--98099301 Score: 213
Period size: 49 Copynumber: 5.2 Consensus size: 48
98099044 ATGTGTGTGT
* *
98099054 CAGTGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGAT-AGTGAGAGC
* * * *
98099103 CAGTGTAAGACCTGTTTGGGACATGGTATTGGCCTCAAGATA-TGCA-AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCA-TCGACTC-AGATAGTG-AGAGC
* * * *
98099152 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGAGGT-GTGTA-AG-
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-TCAGATAGTG-AGAGC
* * * * *
98099199 -TGTATAAGACTTGTCTGGGACATGGCATTGACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGAT-AGTGAGAGC
* * * *
98099247 CAGTGTAAGACCTGTTTGGGACATGGCATTGACTTAGAT-GTGAGAAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGC
98099294 CAGTGTAA
1 CAGTGTAA
98099302 AACCATATTT
Statistics
Matches: 160, Mismatches: 29, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
45 3 0.02
46 28 0.17
47 20 0.12
48 11 0.07
49 88 0.55
50 6 0.04
51 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGC
Found at i:98103766 original size:26 final size:26
Alignment explanation
Indices: 98103710--98103766 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
98103700 ATTTAGTCCA
* *
98103710 AATTCTAAAAATTTAAAAATAAATAT
1 AATTTTAAAAACTTAAAAATAAATAT
* *
98103736 AATTTTAAAAACTTGAAAATATATAT
1 AATTTTAAAAACTTAAAAATAAATAT
*
98103762 TATTT
1 AATTT
98103767 ATTATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (26 bp):
AATTTTAAAAACTTAAAAATAAATAT
Found at i:98107374 original size:21 final size:21
Alignment explanation
Indices: 98107348--98107391 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
98107338 CCGCTACGCT
98107348 CGAGATATGATGGCAACTGAG
1 CGAGATATGATGGCAACTGAG
98107369 CGAGATATGATGGCAACTGAG
1 CGAGATATGATGGCAACTGAG
98107390 CG
1 CG
98107392 TGAAAGGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.34, T:0.18
Consensus pattern (21 bp):
CGAGATATGATGGCAACTGAG
Found at i:98109423 original size:16 final size:18
Alignment explanation
Indices: 98109402--98109435 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
98109392 CGTCAAGAAG
98109402 CTCAAG-TC-TGTTTTGA
1 CTCAAGCTCTTGTTTTGA
98109418 CTCAAGCTCTTGTTTTGA
1 CTCAAGCTCTTGTTTTGA
98109436 TATAGCCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (18 bp):
CTCAAGCTCTTGTTTTGA
Found at i:98114740 original size:298 final size:298
Alignment explanation
Indices: 98113485--98114914 Score: 1901
Period size: 298 Copynumber: 4.8 Consensus size: 298
98113475 AGGTGTTATA
* * * *
98113485 CGATGTCTTGTGATGGAAGTTTTTA-GAGTCAGGTCATTCTTCCCTTACCTTATACGATGAGCAT
1 CGATGTCTCGCGATGAAAG-TTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCAT
** * * * *
98113549 GAAGAGGTAAGAATTCGAAATTTGAACCTCCTGTCATTAATGTTGTCAAATCATCGATATCAAGT
65 GAAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAAT
* * ** * * * *
98113614 CTAGCATCTCTAACTCAATTTTAGTAGCAAAGTGTAGGACTTTAAAGAACTCAAATGCTTAAAGC
130 CTAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGC
* * * * * *
98113679 TAAGTAGTGTTTTAATGGTTGATTTTTTCTCGTTAATAGAAAACACAATAGTGGCATTGATGCTT
195 TAAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTT
* *
98113744 ACTCTATTGTCGTTATCAAAGTCGGTCCATGTAGCTTAC
260 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * *
98113783 CAATGTCAT-GCGAT-AGAAGTTTTGGGAGTCA----AGTCTTCCCTTACCTCATACGATGAGCA
1 CGATGTC-TCGCGATGA-AAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCA
* *
98113842 TGAAGAGGTAAGAAACCAGAATTCGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAA
64 TGAAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAA
* * * * * *
98113907 TCTGACATCTCTGACTCCCTTTCAATAACAAAGTGTTA-GACTTTCAAGGACTCAAATGCTTAAG
129 TCTAACATCTCTGACTCCCTTTCAGTAGCAAAGTG-TAGGACGTTGAAGGACTCAAATGCTTAAA
* * * * * ** * * *
98113971 GCTAAACAGTGCTTCAAAGATTGA-TTTTTCTCGTTAATGGAAAACATAATAGTGGTATTAATGC
193 GCTAAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATAC
* * *
98114035 TTACTTTATTGTTGTTATCAAAACCGGTCCATTTAGCTTAC
258 TTACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * * ** * *
98114076 TGATGTCTCGCAATGGAAGTTTTAGGAGTCAACTCATTTTTTCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGAAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* *
98114141 AAAAGGTAAAAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
* * * *
98114206 CAACATCTTTGATTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGCT
131 TAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
* *
98114271 AAGTAGTGCTTCAATGGTCGATTTTTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTT
196 AAGCAGTGCTTCAATGGTCGA-TTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTT
98114336 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
260 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* *
98114375 CGATGTCTCGCGGTGAAAGTTTTAGGAGTTAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGAAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* *
98114440 AAGAGGTAAGAAACCAAAATTTGAACCTTCTGTCATCAGTGCTGTCAAATCATCGATATCAAAT-
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
* *
98114504 TGAACATCTCTGATTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGC
131 T-AACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGC
* *
98114569 TAAGCAGTGCTTCAATGGTCGATTTTTTCTCATTAATAGAAAATGCAATAGTGGCATTGATACTT
195 TAAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTT
* *
98114634 ACTTTATTGTTGTTATCAAAGCCAGTCCATGTAGCTTAC
260 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * * *
98114673 CGATGTTTCGCGGTGAAAGTTTTAGGAGTTAGGTGATTCTTCCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGAAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * * *
98114738 AAGAAGCAAGAAACCAAAATTTGAACCTTCTGTCATCAGTGCTGTCAAATCATCTG-TATCAAAT
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATC-GATATCAAAT
* * * * * * *
98114802 CTAACTTCTCTAACTCCATTTTAGCAGCAAAGTGTAGGACTTTGAAGGACTCAAATGCTTAAGGC
130 CTAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGC
*
98114867 TAAGCAGTGCTTCAATGGTCGATTTTTTCTTGTTAATAGAAAACGCAA
195 TAAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAA
98114915 AATTGAGTTT
Statistics
Matches: 1004, Mismatches: 112, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
292 1 0.00
293 95 0.09
294 151 0.15
295 2 0.00
296 2 0.00
297 160 0.16
298 320 0.32
299 273 0.27
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (298 bp):
CGATGTCTCGCGATGAAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
TAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTA
CTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
Found at i:98114833 original size:597 final size:590
Alignment explanation
Indices: 98113505--98114914 Score: 1936
Period size: 597 Copynumber: 2.4 Consensus size: 590
98113495 TGATGGAAGT
* * ** *
98113505 TTTTA-GAGTCAGGTCATTCTTCCCTTACCTTATACGATGAGCATGAAGAGGTAAGAATTCGAAA
1 TTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATGAAGAAGTAAGAAACCAAAA
* * * * *
98113569 TTTGAACCTCCTGTCATTAATGTTGTCAAATCATCGATATCAAGTCTAGCATCTCTAACTCAATT
66 TTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATCTAACATCTCTAACTCCATT
* * * *
98113634 TTAGTAGCAAAGTGTAGGACTTTAAAGAACTCAAATGCTTAAAGCTAAGTAGTGTTTTAATGGTT
131 TTAGTAGCAAAGTGTAGGACTTGAAAG-ACTCAAATGCTTAAAGCTAAGTAGTGCTTCAATGGTC
* *
98113699 GATTTTTTCTCGTTAATAGAAAACACAATAGTGGCATTGATGCTTACTCTATTGTCGTTATCAAA
195 GATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTACTCTATTGTCGTTATCAAA
*
98113764 GTCGGTCCATGTAGCTTACCAATGTCATGCGATAGAAGTTTTGGGAGTCAAGTCTTCCCTTACCT
260 GCCGGTCCATGTAGCTTACCAATGTCATGCGATAGAAGTTTTGGGAGTCAAGTCTTCCCTTACCT
* *
98113829 CATACGATGAGCATGAAGAGGTAAGAAACCAGAATTCGAACCTCCTGTCATCAGTGTTGTCAAAT
325 CATACGATGAGCATGAAGAGGTAAGAAACCAAAATTCGAACCTCCTGTCATCAGTGCTGTCAAAT
*
98113894 CATCGATATCAAATCTGACATCTCTGACTCCCTTTCAATAACAAAGTGTTAGACTTTCAAGGACT
390 CATCGATATCAAATCTGACATCTCTGACTCCCTTTCAATAACAAAGTGTTAGACGTTCAAGGACT
* * * * *
98113959 CAAATGCTTAAGGCTAAACAGTGCTTCAAAGATTGATTTTTCTCGTTAATGGAAAACATAATAGT
455 CAAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGATTTTTCTCATTAATAGAAAACACAATAGT
* * * * *
98114024 GGTATTAATGCTTACTTTATTGTTGTTATCAAAACCGGTCCATTTAGCTTACTGATGTCTCGCAA
520 GGCATTAATACTTACTTTATTGTTGTTATCAAAACCAGTCCATGTAGCTTACCGATGTCTCGCAA
*
98114089 TGGAAG
585 TGAAAG
** * * *
98114095 TTTTAGGAGTCAACTCATTTTTTCCTTACCTCATACGATGAGCATGAA-AAGGTAAAAAACCAAA
1 TTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATGAAGAA-GTAAGAAACCAAA
* * * * *
98114159 ATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATCCAACATCTTTGATTCCCT
65 ATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATCTAACATCTCTAACTCCAT
* *
98114224 TTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGCTAAGTAGTGCTTCAATGGT
130 TTTAGTAGCAAAGTGTAGGAC-TTGAAAGACTCAAATGCTTAAAGCTAAGTAGTGCTTCAATGGT
* *
98114289 CGATTTTTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTTACTCTATTGTTGTTATCA
194 CGA-TTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTACTCTATTGTCGTTATCA
* * *
98114354 AAGCCGGTCCATGTAGCTTACCGATGTC-TCGCGGT-GAAAGTTTTAGGAGTTAGGTC-ATTCTT
258 AAGCCGGTCCATGTAGCTTACCAATGTCAT-GCGATAG-AAGTTTT-GG-G--A-GTCAAGTCTT
* *
98114416 CCCTTACCTCATACGATGAGCATGAAGAGGTAAGAAACCAAAATTTGAACCTTCTGTCATCAGTG
316 CCCTTACCTCATACGATGAGCATGAAGAGGTAAGAAACCAAAATTCGAACCTCCTGTCATCAGTG
* * *
98114481 CTGTCAAATCATCGATATCAAAT-TGAACATCTCTGATTCCCTTTCAGTAGCAAAGTG-TAGGAC
381 CTGTCAAATCATCGATATCAAATCTG-ACATCTCTGACTCCCTTTCAATAACAAAGTGTTA-GAC
* * * * *
98114544 GTTGAATGACTCAAATGCTTAAAGCTAAGCAGTGCTTCAATGGTCGATTTTTTCTCATTAATAGA
444 GTTCAAGGACTCAAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGA-TTTTTCTCATTAATAGA
** * *
98114609 AAATGCAATAGTGGCATTGATACTTACTTTATTGTTGTTATCAAAGCCAGTCCATGTAGCTTACC
508 AAACACAATAGTGGCATTAATACTTACTTTATTGTTGTTATCAAAACCAGTCCATGTAGCTTACC
* **
98114674 GATGTTTCGCGGTGAAAG
573 GATGTCTCGCAATGAAAG
* * *
98114692 TTTTAGGAGTTAGGTGATTCTTCCCTTACCTCATACGATGAGCATGAAGAAGCAAGAAACCAAAA
1 TTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATGAAGAAGTAAGAAACCAAAA
* * *
98114757 TTTGAACCTTCTGTCATCAGTGCTGTCAAATCATCTG-TATCAAATCTAACTTCTCTAACTCCAT
66 TTTGAACCTCCTGTCATCAGTGTTGTCAAATCATC-GATATCAAATCTAACATCTCTAACTCCAT
* * * *
98114821 TTTAGCAGCAAAGTGTAGGACTTTGAAGGACTCAAATGCTTAAGGCTAAGCAGTGCTTCAATGGT
130 TTTAGTAGCAAAGTGTAGGAC-TTGAAAGACTCAAATGCTTAAAGCTAAGTAGTGCTTCAATGGT
*
98114886 CGATTTTTTCTTGTTAATAGAAAACGCAA
194 CGATTTTTTCTCGTTAATAGAAAACGCAA
98114915 AATTGAGTTT
Statistics
Matches: 715, Mismatches: 89, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
590 6 0.01
591 159 0.22
592 99 0.14
593 2 0.00
594 1 0.00
595 4 0.01
596 184 0.26
597 257 0.36
598 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (590 bp):
TTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATGAAGAAGTAAGAAACCAAAA
TTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATCTAACATCTCTAACTCCATT
TTAGTAGCAAAGTGTAGGACTTGAAAGACTCAAATGCTTAAAGCTAAGTAGTGCTTCAATGGTCG
ATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTACTCTATTGTCGTTATCAAAG
CCGGTCCATGTAGCTTACCAATGTCATGCGATAGAAGTTTTGGGAGTCAAGTCTTCCCTTACCTC
ATACGATGAGCATGAAGAGGTAAGAAACCAAAATTCGAACCTCCTGTCATCAGTGCTGTCAAATC
ATCGATATCAAATCTGACATCTCTGACTCCCTTTCAATAACAAAGTGTTAGACGTTCAAGGACTC
AAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGATTTTTCTCATTAATAGAAAACACAATAGTG
GCATTAATACTTACTTTATTGTTGTTATCAAAACCAGTCCATGTAGCTTACCGATGTCTCGCAAT
GAAAG
Found at i:98115427 original size:31 final size:31
Alignment explanation
Indices: 98115387--98115455 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
98115377 GAATTTGGAC
98115387 TAAA-TTGACAAATGTGCAAACATTAAGGGT
1 TAAATTTGACAAATGTGCAAACATTAAGGGT
98115417 TAAATTTGACAAATGTGCAAACATTAAGGGT
1 TAAATTTGACAAATGTGCAAACATTAAGGGT
98115448 TAAATTTG
1 TAAATTTG
98115456 TTGGATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 34 0.89
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (31 bp):
TAAATTTGACAAATGTGCAAACATTAAGGGT
Found at i:98115701 original size:61 final size:60
Alignment explanation
Indices: 98115584--98115703 Score: 136
Period size: 61 Copynumber: 2.0 Consensus size: 60
98115574 ATTATTTTTT
* * *
98115584 TTGAATTTTTAGAATTTGGACTAAATTGACAAAATGTACAAACATTGAGGGTTAAATTTG
1 TTGAATTTTTAGAATTAGGACTAAATTGACAAAATGTACAAACATTAAGGGCTAAATTTG
* * **
98115644 TTGAATTTTTTAGAATTAGGA-TCGAATTGA-AAAATTTACAAAGTGTTAAGGGCTAAATTT
1 TTGAA-TTTTTAGAATTAGGACT-AAATTGACAAAATGTACAAA-CATTAAGGGCTAAATTT
98115704 ATTATTATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
60 17 0.34
61 33 0.66
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (60 bp):
TTGAATTTTTAGAATTAGGACTAAATTGACAAAATGTACAAACATTAAGGGCTAAATTTG
Found at i:98117051 original size:29 final size:32
Alignment explanation
Indices: 98117010--98117070 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
98117000 ATACTTTTTT
98117010 AATAAATTAATA-TTTT-TT-AATTTTTAAAA
1 AATAAATTAATATTTTTCTTGAATTTTTAAAA
* *
98117039 AATAATTTTATATTTTTCTTGAATTTTTAAAA
1 AATAAATTAATATTTTTCTTGAATTTTTAAAA
98117071 TTTAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 10 0.37
30 4 0.15
31 2 0.07
32 11 0.41
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (32 bp):
AATAAATTAATATTTTTCTTGAATTTTTAAAA
Found at i:98121779 original size:31 final size:31
Alignment explanation
Indices: 98121718--98121845 Score: 140
Period size: 31 Copynumber: 4.3 Consensus size: 31
98121708 GTGATGAAAG
98121718 CCTACCACCT-GGATTGCCCCG-C-A--ATGA
1 CCTACCACCTCGGATTG-CCCGACAATGATGA
* *
98121745 CCTACCACCCCGGATTGCCAGACAATGATGA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
* * *
98121776 CCTACCACCTTGGATTGCCCGGCAATGATAA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
* * *
98121807 CCTACTACCTCGAATTGCCCGACAAAGATGA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
98121838 CCTACCAC
1 CCTACCAC
98121846 AATTACTCTA
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
27 12 0.15
28 7 0.09
29 1 0.01
31 62 0.76
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (31 bp):
CCTACCACCTCGGATTGCCCGACAATGATGA
Found at i:98121831 original size:62 final size:58
Alignment explanation
Indices: 98121718--98121845 Score: 166
Period size: 62 Copynumber: 2.1 Consensus size: 58
98121708 GTGATGAAAG
* *
98121718 CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGGATTGCCAGACAATGATGA
1 CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGAATTGCCAGACAAAGATGA
* * * *
98121776 CCTACCACCTTGGATTGCCCGGCAATGATAACCTACTACCTCGAATTGCCCGACAAAGATGA
1 CCTACCACC-TGGATTGCCCCGCAATG---ACCTACCACCCCGAATTGCCAGACAAAGATGA
98121838 CCTACCAC
1 CCTACCAC
98121846 AATTACTCTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
58 9 0.15
59 16 0.27
62 35 0.58
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (58 bp):
CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGAATTGCCAGACAAAGATGA
Found at i:98126816 original size:2 final size:2
Alignment explanation
Indices: 98126811--98126838 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
98126801 GCACTTATGA
98126811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98126839 GGTATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98127489 original size:40 final size:40
Alignment explanation
Indices: 98127426--98127645 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
98127416 ATTCAGATTG
98127426 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
98127465 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
98127505 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
98127545 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
98127585 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
98127625 ATATCC-GGCTAAG-CCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
98127646 TACTTGGTTT
Statistics
Matches: 171, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 8 0.05
39 22 0.13
40 141 0.82
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:98155181 original size:16 final size:17
Alignment explanation
Indices: 98155160--98155204 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
98155150 TTTTTGTTCA
98155160 TTTTGCT-CTCCTCTCT
1 TTTTGCTCCTCCTCTCT
98155176 TTTTGCTGCC-CCTCT-T
1 TTTTGCT-CCTCCTCTCT
*
98155192 ATTTGCTCCTCCT
1 TTTTGCTCCTCCT
98155205 ACTTCTCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 2 0.08
16 17 0.68
17 5 0.20
18 1 0.04
ACGTcount: A:0.02, C:0.38, G:0.09, T:0.51
Consensus pattern (17 bp):
TTTTGCTCCTCCTCTCT
Found at i:98157783 original size:50 final size:50
Alignment explanation
Indices: 98157633--98157835 Score: 178
Period size: 50 Copynumber: 4.1 Consensus size: 50
98157623 TTTGGTCGAT
* * * * * * * *
98157633 TATAGAAAATAAAATATAATATCACATATATGCATGCCTATATAGCTGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
* * * * * * *
98157683 TATGCAAGATCAAAT-TAACATCAAATATATACTTACTTATATGGCAGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
* * * *
98157732 TATACAAATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTAT-ATGGCCGAA
* *
98157782 TACT-CAAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAA
1 TA-TACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
98157832 TATA
1 TATA
98157836 TACAAGGTCA
Statistics
Matches: 119, Mismatches: 29, Indels: 10
0.75 0.18 0.06
Matches are distributed among these distances:
49 40 0.34
50 77 0.65
51 2 0.02
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (50 bp):
TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
Found at i:98164476 original size:2 final size:2
Alignment explanation
Indices: 98164471--98164495 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98164461 ACATATATGC
98164471 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
98164496 CAATCAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98169575 original size:16 final size:16
Alignment explanation
Indices: 98169538--98169577 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
98169528 GAGAATTAAG
*
98169538 TAAAAATCAAATAAAC
1 TAAAAATCAAATAAAA
98169554 TAAAAATCAAATAAAAA
1 TAAAAATCAAAT-AAAA
98169571 TAAAAAT
1 TAAAAAT
98169578 AAAAATTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAAATCAAATAAAA
Found at i:98169910 original size:17 final size:17
Alignment explanation
Indices: 98169888--98169929 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
98169878 TTATGTTACG
* *
98169888 AAAAATCAAATTAAGCT
1 AAAAATCAAATAAAACT
*
98169905 AAAAAT-TAATAAAACT
1 AAAAATCAAATAAAACT
98169921 AAAAATCAA
1 AAAAATCAA
98169930 CCAATTTAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAATCAAATAAAACT
Found at i:98172599 original size:14 final size:14
Alignment explanation
Indices: 98172571--98172615 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
98172561 TTTTTATAAA
*
98172571 TTTAAAATTTAATT
1 TTTAAATTTTAATT
* *
98172585 TTTATATTTTTATT
1 TTTAAATTTTAATT
98172599 TTTAAATTTTAATT
1 TTTAAATTTTAATT
98172613 TTT
1 TTT
98172616 TTTTACTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAAATTTTAATT
Found at i:98172616 original size:8 final size:7
Alignment explanation
Indices: 98172578--98172615 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
98172568 AAATTTAAAA
98172578 TTTAATT
1 TTTAATT
98172585 TTTATATT
1 TTTA-ATT
98172593 TTT-ATT
1 TTTAATT
*
98172599 TTTAAAT
1 TTTAATT
98172606 TTTAATT
1 TTTAATT
98172613 TTT
1 TTT
98172616 TTTTACTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
7 15 0.56
8 6 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:98179367 original size:10 final size:10
Alignment explanation
Indices: 98179352--98179398 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
98179342 GCTTATAGTC
98179352 CATACCAAAT
1 CATACCAAAT
98179362 CATACCAAAT
1 CATACCAAAT
98179372 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
98179385 CATACCAAAA
1 CATACCAAAT
98179395 CATA
1 CATA
98179399 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:98179388 original size:23 final size:22
Alignment explanation
Indices: 98179356--98179398 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
98179346 ATAGTCCATA
*
98179356 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
98179378 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
98179399 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:98180192 original size:42 final size:43
Alignment explanation
Indices: 98180083--98180252 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
98180073 AGCTCATACA
* * *
98180083 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATTG
*
98180126 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-TG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATTG
* * *
98180168 GTGACGA-TGTCCTAGACATGGTCTTACACGTAAATCTCAAATA--G
1 ATG-CCACTGTCCCAGACATGGTCTTACACG-AAA--TCAAATATTG
* * * * *
98180212 ATGCCAAC-ATCCCAAACGTGGTCTTACATGAAATCACATAT
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
98180253 CAAAAATCCT
Statistics
Matches: 103, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
41 6 0.06
42 27 0.26
43 42 0.41
44 21 0.20
45 7 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATTG
Found at i:98180731 original size:43 final size:43
Alignment explanation
Indices: 98180668--98180752 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
98180658 CACAAAATAC
*
98180668 ACAAAATTTCCTTTCACACATGCCTAGCTGAATTTTCCTTTAA
1 ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTAA
*
98180711 ACAAAATTTCCTTTCGCACATGCCTAGCTAAATTTTCCTTTA
1 ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTA
98180753 GCTTAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (43 bp):
ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTAA
Found at i:98185067 original size:2 final size:2
Alignment explanation
Indices: 98185060--98185087 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
98185050 TTTAATGTGC
98185060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98185088 GACATAGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98190294 original size:41 final size:40
Alignment explanation
Indices: 98190238--98190357 Score: 116
Period size: 41 Copynumber: 2.9 Consensus size: 40
98190228 TCAAATATCA
* *
98190238 ATACCACTGTCCCAGACAGGGTCTTACAGAAATCAAATACG
1 ATACCAATGTCCCAGACATGGTCTTACAGAAATCAAAT-CG
* * * *
98190279 ATATCGATGTCCCAGATATGGTCTTACTTGTAAATATCAAATCG
1 ATACCAATGTCCCAGACATGGTCTTAC-AG--AA-ATCAAATCG
*
98190323 ATGCCAATGTCCCAGAC-TGGTCTTACACGAAATCA
1 ATACCAATGTCCCAGACATGGTCTTACA-GAAATCA
98190358 CATATCAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
40 4 0.06
41 24 0.38
42 1 0.02
43 10 0.16
44 17 0.27
45 7 0.11
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
ATACCAATGTCCCAGACATGGTCTTACAGAAATCAAATCG
Found at i:98198995 original size:16 final size:16
Alignment explanation
Indices: 98198974--98199007 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98198964 ATGTTTTTCG
98198974 ATTTTATTATATGTTT
1 ATTTTATTATATGTTT
* *
98198990 ATTTTATTTTATTTTT
1 ATTTTATTATATGTTT
98199006 AT
1 AT
98199008 ATATTATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
ATTTTATTATATGTTT
Found at i:98199102 original size:30 final size:30
Alignment explanation
Indices: 98199037--98199102 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
98199027 ATATTAAAAT
*
98199037 TAAATATGTAATGTTTTATTTTAAATATTAA
1 TAAATATGT-ATGTTTTATTTTAAAAATTAA
98199068 -AAATATGT-TG-TTTATGTTTAAAAAATTAA
1 TAAATATGTATGTTTTAT-TTT-AAAAATTAA
98199097 TAAATA
1 TAAATA
98199103 AAATAAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
27 5 0.16
28 5 0.16
29 8 0.26
30 13 0.42
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (30 bp):
TAAATATGTATGTTTTATTTTAAAAATTAA
Found at i:98207502 original size:36 final size:37
Alignment explanation
Indices: 98207457--98207537 Score: 146
Period size: 36 Copynumber: 2.2 Consensus size: 37
98207447 GCCGGTAATC
98207457 AATACATAATCTCATGGAACCATCATTC-TTTTTTACG
1 AATA-ATAATCTCATGGAACCATCATTCTTTTTTTACG
98207494 AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
1 AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
98207531 AATAATA
1 AATAATA
98207538 CGGGAGCACC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 23 0.53
37 20 0.47
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (37 bp):
AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
Found at i:98218285 original size:49 final size:49
Alignment explanation
Indices: 98218228--98218491 Score: 345
Period size: 49 Copynumber: 5.2 Consensus size: 49
98218218 TATGATATAC
* *
98218228 ATATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGT
98218276 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
98218324 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGA--T-GTG-A--TG-AA---TGTGAAAGTGT
* *
98218383 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
98218432 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
98218481 ATATATATGTG
1 ATATATATGTG
98218492 CTAATGTGAA
Statistics
Matches: 198, Mismatches: 5, Indels: 25
0.87 0.02 0.11
Matches are distributed among these distances:
46 1 0.01
47 43 0.22
49 97 0.49
51 1 0.01
52 5 0.03
53 3 0.02
55 2 0.01
56 5 0.03
57 1 0.01
59 40 0.20
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:98218365 original size:31 final size:31
Alignment explanation
Indices: 98218330--98218425 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
98218320 GTGTATGTAT
98218330 ATGTGATAAGGCCTAATGGCCGATGTGGTGA
1 ATGTGATAAGGCCTAATGGCCGATGTGGTGA
* *** *
98218361 ATGTGA-AAGTG--T-GTGAAAG-TGT-ATGTA
1 ATGTGATAAG-GCCTAATGGCCGATGTGGTG-A
98218388 TATGTGATAAGGCCTAATGGCCGATGTGGTGA
1 -ATGTGATAAGGCCTAATGGCCGATGTGGTGA
98218420 ATGTGA
1 ATGTGA
98218426 AAGTGTATGT
Statistics
Matches: 46, Mismatches: 10, Indels: 18
0.62 0.14 0.24
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 10 0.22
29 4 0.09
30 4 0.09
31 16 0.35
32 4 0.09
33 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.29
Consensus pattern (31 bp):
ATGTGATAAGGCCTAATGGCCGATGTGGTGA
Found at i:98218394 original size:59 final size:59
Alignment explanation
Indices: 98218313--98218480 Score: 266
Period size: 59 Copynumber: 3.0 Consensus size: 59
98218303 ATGTGATGAA
98218313 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
98218372 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGA--T-GTG---GTG-AA---
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
98218421 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
98218480 T
1 T
98218481 ATATATATGT
Statistics
Matches: 99, Mismatches: 0, Indels: 20
0.83 0.00 0.17
Matches are distributed among these distances:
49 40 0.40
51 1 0.01
52 5 0.05
53 3 0.03
55 3 0.03
56 5 0.05
57 1 0.01
59 41 0.41
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (59 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
Found at i:98218403 original size:108 final size:106
Alignment explanation
Indices: 98218266--98218480 Score: 403
Period size: 108 Copynumber: 2.0 Consensus size: 106
98218256 ATGTGATGAA
98218266 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
98218331 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
66 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
*
98218372 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
1 TGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTA
98218437 TATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
64 TATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
98218480 T
1 T
98218481 ATATATATGT
Statistics
Matches: 106, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
106 12 0.11
108 94 0.89
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (106 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
Found at i:98218596 original size:37 final size:37
Alignment explanation
Indices: 98218546--98218667 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
98218536 GGAAAATGTT
*
98218546 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
98218583 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
98218620 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
98218657 CCGGGTAAGAC
1 CCGGGTAAGAC
98218668 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:98229460 original size:49 final size:49
Alignment explanation
Indices: 98229387--98229574 Score: 252
Period size: 49 Copynumber: 3.8 Consensus size: 49
98229377 TAGCCGAAGC
*
98229387 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
98229436 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGCGA-C-CAAT
* * *
98229487 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
98229536 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
98229575 CGTGACCTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 76 0.64
50 4 0.03
51 39 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:98229506 original size:100 final size:100
Alignment explanation
Indices: 98229392--98229575 Score: 350
Period size: 100 Copynumber: 1.8 Consensus size: 100
98229382 GAAGCTATCT
*
98229392 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
98229457 TGCACTTAGTACTACACACTTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACTTGATCACAGTTTTCG
*
98229492 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
98229557 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
98229576 GTGACCTCAC
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACTTGATCACAGTTTTCG
Found at i:98235529 original size:93 final size:93
Alignment explanation
Indices: 98235420--98235590 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
98235410 GCCCCTAAGT
* * *
98235420 GAACTCGGACTCAACTCAATGAGCTC-AAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGAA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
98235484 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
98235513 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98235578 CGAGTTCGGATGC
66 CGAGTTCGGATGC
98235591 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98235579 original size:46 final size:45
Alignment explanation
Indices: 98235413--98235585 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
98235403 GTAACCCGCC
* * *
98235413 CCTAAGTGAACTCGGACTCAACTCAATGAGCTC-AAGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAA-CATTCGCAT
* *
98235458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCAT
* * *
98235508 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
98235551 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
98235586 GATGCTCAAC
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.55
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
Found at i:98235606 original size:46 final size:46
Alignment explanation
Indices: 98235413--98235606 Score: 143
Period size: 46 Copynumber: 4.2 Consensus size: 46
98235403 GTAACCCGCC
* * * *
98235413 CCTAAGTGAACTCGGACTCAACTCAATGAGCTC--AAGCGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC--TCAACAT
98235458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * * *** *
98235508 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
98235551 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
98235599 CCT-AGTGA
1 CCTAAGTGA
98235607 CATGTCACTT
Statistics
Matches: 115, Mismatches: 20, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.04
46 63 0.55
47 28 0.24
48 11 0.10
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:98243094 original size:93 final size:93
Alignment explanation
Indices: 98242983--98243153 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
98242973 GCCCCTAAGT
* **** *
98242983 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98243048 CGACTTCGGATGCCTAGTTACATCTCAC
66 CGACTTCGGATGCCTAGTTACATCTCAC
* *
98243076 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98243141 CGAGTTCGGATGC
66 CGACTTCGGATGC
98243154 TTAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGACTTCGGATGCCTAGTTACATCTCAC
Found at i:98243169 original size:46 final size:47
Alignment explanation
Indices: 98242978--98243155 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 47
98242968 AACCTGCCCC
* *
98242978 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTG-TTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTCGCATCCA
* * **
98243024 TAATTGAACTCGGACTCAACTCAACGACTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CT--TCGCATCCA
* * * * *
98243072 TCA-CGAACTCAGACTCAACTCAACGAGTTC-GA-ACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TTCGCATCCA
98243117 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTT
98243156 AACCATCCTA
Statistics
Matches: 105, Mismatches: 17, Indels: 19
0.74 0.12 0.13
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 3 0.03
46 59 0.56
47 28 0.27
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTCGCATCCA
Found at i:98250163 original size:50 final size:50
Alignment explanation
Indices: 98250083--98250194 Score: 136
Period size: 50 Copynumber: 2.2 Consensus size: 50
98250073 AATGACCTTT
* * *
98250083 CATATTCGGCCACATAGGTATGTACTTATGTGATGTTATAT-TGGAACTTG
1 CATATTCGGCCACATAGATATGTACATATGTGATATTAT-TCTGGAACTTG
** * *
98250133 CATATTCGGCCTTATAGATATGTACATATGTGATATTATTCTTGATCTTG
1 CATATTCGGCCACATAGATATGTACATATGTGATATTATTCTGGAACTTG
*
98250183 CATATTTGGCCA
1 CATATTCGGCCA
98250195 AATAAGTAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.02
50 51 0.98
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (50 bp):
CATATTCGGCCACATAGATATGTACATATGTGATATTATTCTGGAACTTG
Found at i:98260770 original size:35 final size:35
Alignment explanation
Indices: 98260721--98260822 Score: 116
Period size: 35 Copynumber: 2.9 Consensus size: 35
98260711 GCTGTGTGTC
* * *
98260721 TTACACGGCCAAAGACACACTCGTGTCACAGGCCG
1 TTACACAGCAAAAGACACACCCGTGTCACAGGCCG
*
98260756 TTACACAGCAAAAGACACGCCCGTGTCACAGGCCG
1 TTACACAGCAAAAGACACACCCGTGTCACAGGCCG
* ** *
98260791 TTACAC-GACCAAAGACATGCCTGTGTCACAGG
1 TTACACAG-CAAAAGACACACCCGTGTCACAGG
98260823 TCGTGTGGAC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
34 1 0.02
35 58 0.98
ACGTcount: A:0.30, C:0.32, G:0.23, T:0.15
Consensus pattern (35 bp):
TTACACAGCAAAAGACACACCCGTGTCACAGGCCG
Found at i:98269312 original size:40 final size:41
Alignment explanation
Indices: 98269216--98269321 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 41
98269206 TCGAATGATG
*
98269216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
* * **
98269256 TCCGGACT-AGAT-CCGAAGGCATTTGTG-TGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA
*
98269295 TCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGT
98269322 ACGAGCTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 25 0.45
40 30 0.55
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:98274553 original size:40 final size:40
Alignment explanation
Indices: 98274516--98274697 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
98274506 GCTACTCGTT
*
98274516 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
98274556 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
98274596 CAAATGCCTTCGGG-C-TTAGCC-GA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * ** * * *
98274632 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
98274673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
98274698 CATCATTCGA
Statistics
Matches: 121, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
35 2 0.02
36 23 0.19
37 3 0.02
38 7 0.06
39 3 0.02
40 71 0.59
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:98274657 original size:76 final size:80
Alignment explanation
Indices: 98274516--98274693 Score: 224
Period size: 76 Copynumber: 2.3 Consensus size: 80
98274506 GCTACTCGTT
* *
98274516 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
98274581 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
98274596 CAAATGCCTTCGGG-CTTAGCC-GAT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
98274657 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
98274673 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
98274694 CGGACATCAT
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
75 3 0.03
76 47 0.54
77 17 0.20
78 2 0.02
79 4 0.05
80 14 0.16
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:98283360 original size:71 final size:71
Alignment explanation
Indices: 98283274--98283437 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98283264 CGATTTGTCT
98283274 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98283339 CTTTCA
66 CTTTCA
98283345 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98283410 CTTTCA
66 CTTTCA
98283416 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98283438 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98283475 original size:71 final size:70
Alignment explanation
Indices: 98283274--98283471 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98283264 CGATTTGTCT
* * * *
98283274 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98283339 CTTTCA
65 CTTTCA
* * * *
98283345 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98283410 CTTTCA
65 CTTTCA
* *
98283416 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98283472 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98299831 original size:37 final size:39
Alignment explanation
Indices: 98299701--98299892 Score: 239
Period size: 39 Copynumber: 4.9 Consensus size: 39
98299691 ATATAATATA
* * * *
98299701 TATATCCGGG-TTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
*
98299740 TATATCCGGGC-AAAGTCCCGCAAGCATTTGTGCTGGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
*
98299779 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTACTGGTA-
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
*
98299817 T-TATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
* * *
98299855 TATATCTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGT
1 TATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGT
98299893 GATTGGATTT
Statistics
Matches: 135, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
37 34 0.25
38 2 0.01
39 63 0.47
40 36 0.27
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
Found at i:98299847 original size:76 final size:78
Alignment explanation
Indices: 98299701--98299895 Score: 236
Period size: 77 Copynumber: 2.5 Consensus size: 78
98299691 ATATAATATA
* * * * *
98299701 TATATCCGGG-TTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCAAAGTCCCGCAAGC
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTACTGGTGATATATCCGGGCAAAGTCCCGCAAGC
*
98299765 ATTTGTGCTGGTAT
65 ATTTGTGCTAGTAT
*
98299779 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTACTGGT-AT-TATCCGGGCTAAAGTCCCGCAGGC
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTACTGGTGATATATCCGGGC-AAAGTCCCGCAAGC
98299842 -TTTGTGCTAGTAT
65 ATTTGTGCTAGTAT
* * **
98299855 TATATCTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGTGAT
1 TATATCCGGGC-TAAAGTCCCGCAGGCTTTGTACTGGTGAT
98299896 TGGATTTGGG
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
76 31 0.30
77 37 0.36
78 21 0.21
79 13 0.13
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (78 bp):
TATATCCGGGCTAAAGTCCCGCAGGCTTTGTACTGGTGATATATCCGGGCAAAGTCCCGCAAGCA
TTTGTGCTAGTAT
Found at i:98305363 original size:40 final size:39
Alignment explanation
Indices: 98305190--98305371 Score: 267
Period size: 39 Copynumber: 4.6 Consensus size: 39
98305180 TATCTGGGTT
* * *
98305190 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-A
1 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTA
98305229 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCGGGCTA
1 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTA
*
98305269 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGGTA
1 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTA
*
98305308 AAGTGCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTTA
1 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGC-TA
* *
98305348 AAGTCCCGCATGCTTTGTGGTGGT
1 AAGTCCCGCAGGCTTTGTGCTGGT
98305372 GATTGGATTT
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 95 0.72
40 37 0.28
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTA
Found at i:98308567 original size:26 final size:23
Alignment explanation
Indices: 98308538--98308585 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 23
98308528 TAGATTATGT
98308538 ATAAGGTATAAATAATAATAATAATA
1 ATAAGGTAT-AATAA-AAT-ATAATA
*
98308564 ATAATGTATAATAAAATATAAT
1 ATAAGGTATAATAAAATATAAT
98308586 TTTTAAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 5 0.24
26 8 0.38
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (23 bp):
ATAAGGTATAATAAAATATAATA
Found at i:98310238 original size:40 final size:41
Alignment explanation
Indices: 98310164--98310431 Score: 357
Period size: 40 Copynumber: 6.6 Consensus size: 41
98310154 AACCCAAGTA
* * *
98310164 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCTACTAGCACAAATG
* * *
98310203 TCTTCGGGTCTTAGCTCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCTACTAGCACAAATG
* *
98310243 CCTTCGGGACTTAGCCCGGATGTAATC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCTACTAGCACAAATG
*
98310283 CCTTCGGGACTTAGCCCGGATGTAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCTACTAGCACAAATG
* *
98310323 CCTTCGAGACTTAGCCCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT--CTACTAGCACAAATG
*
98310366 CCTTCGGGACTTAGCCCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT--CTACTAGCACAAATG
98310409 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
98310432 CATCCGAATA
Statistics
Matches: 209, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 11 0.05
40 119 0.57
41 1 0.00
42 1 0.00
43 77 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCTACTAGCACAAATG
Found at i:98314005 original size:45 final size:45
Alignment explanation
Indices: 98313950--98314059 Score: 211
Period size: 45 Copynumber: 2.4 Consensus size: 45
98313940 GGCTTAAATT
*
98313950 TGCTTCACTGCAACTTCAGGAATACCAGATTCCCCGTCTTTAATC
1 TGCTCCACTGCAACTTCAGGAATACCAGATTCCCCGTCTTTAATC
98313995 TGCTCCACTGCAACTTCAGGAATACCAGATTCCCCGTCTTTAATC
1 TGCTCCACTGCAACTTCAGGAATACCAGATTCCCCGTCTTTAATC
98314040 TGCTCCACTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGG
98314060 GAAACAAGAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.29
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGGAATACCAGATTCCCCGTCTTTAATC
Found at i:98314010 original size:132 final size:133
Alignment explanation
Indices: 98313756--98314014 Score: 405
Period size: 132 Copynumber: 2.0 Consensus size: 133
98313746 ACTGGAGACG
98313756 AGATCTACAATATTCAGCCTACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTGC
1 AGATCTACAATATTCAGCCTACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTGC
* * *
98313821 TTTACTACAACTTATGGAAGACAAGATTCGCCGTCTTCAATCTGCTCCACTGTAACTTCAGGGAA
66 TTCACTACAACTTATGGAAGACAAGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAA
98313886 ACA
131 ACA
* * *
98313889 AGATCTACAAT-TTTAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGC
1 AGATCTACAATATTCAGCCTACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTGC
* * * *
98313953 TTCACTGCAACTTCA-GGAATACCAGATTCCCCGTCTTTAATCTGCTCCACTGCAACTTCAGG
66 TTCACTACAACTT-ATGGAAGACAAGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGG
98314015 AATACCAGAT
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
132 103 0.90
133 12 0.10
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (133 bp):
AGATCTACAATATTCAGCCTACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTGC
TTCACTACAACTTATGGAAGACAAGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAA
ACA
Found at i:98314110 original size:177 final size:177
Alignment explanation
Indices: 98313844--98314191 Score: 554
Period size: 177 Copynumber: 2.0 Consensus size: 177
98313834 ATGGAAGACA
* * *
98313844 AGATTCGCCGTCTTCAATCTGCTCCACTGTAACTTCAGGGAAACAAGATCTACAATTTTAGCCTA
1 AGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATTTCAGCCTA
*
98313909 CTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGCAACTTCAGGAATA
66 CTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGCAACTTCAGGAAGA
* * *
98313974 CCAGAT-TCCCCGTCTTTAATCTGCTCCACTGCAACTTCAGGAATACC
131 CAAGATCT-CCCGACTTCAATCTGCTCCACTGCAACTTCAGGAATACC
* *
98314021 AGATTCCCCGTCTTTAATCTGCTCCACTGCAACTTCAGGGAAACAAGATTTACAATTTCAGCCTA
1 AGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATTTCAGCCTA
* *
98314086 CTCTACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGTAACTTCAGGAAGA
66 CTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGCAACTTCAGGAAGA
* * *
98314151 CAAGATCTGCCGACTTCGATCTGCTCCACTGCAATTTCAGG
131 CAAGATCTCCCGACTTCAATCTGCTCCACTGCAACTTCAGG
98314192 GACACAAGAT
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
177 155 0.99
178 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (177 bp):
AGATTCCCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATTTCAGCCTA
CTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGCAACTTCAGGAAGA
CAAGATCTCCCGACTTCAATCTGCTCCACTGCAACTTCAGGAATACC
Found at i:98320500 original size:40 final size:40
Alignment explanation
Indices: 98320455--98320622 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
98320445 CGGAATACAA
98320455 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
98320495 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
98320535 CCGGATGTAGCCACTAGCGC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
98320575 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
98320615 CCGGATAT
1 CCGGATAT
98320623 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:98327700 original size:40 final size:40
Alignment explanation
Indices: 98327655--98327822 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
98327645 CGGAATACAA
98327655 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
98327695 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
98327735 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
98327775 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
98327815 CCGGATAT
1 CCGGATAT
98327823 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:98336170 original size:3 final size:3
Alignment explanation
Indices: 98336157--98336238 Score: 123
Period size: 3 Copynumber: 27.7 Consensus size: 3
98336147 TGTGTAAGGT
*
98336157 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
98336205 ATA ATA ATA ATA ATA ATGT ATA ATA A-A AT- ATA AT
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA AT
98336239 TTTTAAAACA
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
2 4 0.06
3 66 0.92
4 2 0.03
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:98350633 original size:22 final size:23
Alignment explanation
Indices: 98350603--98350646 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
98350593 TATGGTAGCT
*
98350603 AAATATATG-TTAAGTATTTGATC
1 AAATATATGATTAA-TATATGATC
98350626 AAAT-TATGATTAATATATGAT
1 AAATATATGATTAATATATGAT
98350647 TGTAAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (23 bp):
AAATATATGATTAATATATGATC
Found at i:98351560 original size:29 final size:28
Alignment explanation
Indices: 98351495--98351560 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
98351485 CGAAATAGAA
* *
98351495 AAATATATAAATAACATGTATAATGAAT
1 AAATAAATAAATAACATGTATAACGAAT
*
98351523 AGATAAATAACATAACATGGTA-AACGAAT
1 AAATAAATAA-ATAACAT-GTATAACGAAT
*
98351552 AAATGAATA
1 AAATAAATA
98351561 TAAAATGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 8 0.26
29 20 0.65
30 3 0.10
ACGTcount: A:0.58, C:0.06, G:0.11, T:0.26
Consensus pattern (28 bp):
AAATAAATAAATAACATGTATAACGAAT
Found at i:98353687 original size:18 final size:17
Alignment explanation
Indices: 98353660--98353706 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
98353650 AAGAGAAAGA
*
98353660 AAAAATAAAAGA-AAAT
1 AAAAATAAAAAACAAAT
98353676 ACAAAATAAAAAACTAAAT
1 A-AAAATAAAAAAC-AAAT
98353695 AAAAATAAAAAA
1 AAAAATAAAAAA
98353707 GAACCAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 1 0.04
17 10 0.37
18 11 0.41
19 5 0.19
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (17 bp):
AAAAATAAAAAACAAAT
Found at i:98353693 original size:25 final size:24
Alignment explanation
Indices: 98353659--98353706 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
98353649 GAAGAGAAAG
*
98353659 AAAAAATAAA-AGAAAATACAAAAT
1 AAAAAATAAATA-AAAATAAAAAAT
98353683 AAAAAACTAAATAAAAATAAAAAA
1 AAAAAA-TAAATAAAAATAAAAAA
98353707 GAACCAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 14 0.67
26 1 0.05
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.12
Consensus pattern (24 bp):
AAAAAATAAATAAAAATAAAAAAT
Found at i:98362807 original size:13 final size:13
Alignment explanation
Indices: 98362785--98362817 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98362775 AAGGGTTTGT
98362785 TTAT-TAAACTAA
1 TTATCTAAACTAA
98362797 TTATCTAAACTAA
1 TTATCTAAACTAA
*
98362810 TTAACTAA
1 TTATCTAA
98362818 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:98368264 original size:388 final size:389
Alignment explanation
Indices: 98367547--98368331 Score: 1482
Period size: 388 Copynumber: 2.0 Consensus size: 389
98367537 GGGGAGGTTC
* *
98367547 ACACGGCCTAGGGCCACGCCCGTGTACATTGAGGGTGAGCCTGTGTTTTTCAACTTTTACGATTT
1 ACACGGCCTAGGGCCACGCCCGTGTACATTGAGGGTGAGCCCGTGTTTTTCAAATTTTACGATTT
**
98367612 AGGTCGTCCCCGGCTAATATCCCACGCCAGTGTGTCTTGGGCATGTGTCGGACACGGCCATGTCG
66 AGGTCGTCCCCGGCTAATATCCCACGCCAGTGTGTCTTGGGCATGCATCGGACACGGCCATGTCG
98367677 CACGGCCGTGCCTAGCTTTGTTTGCTTCTCCTACACCCGTGTGTTATGGTAGCACGCTCGTGTAT
131 CACGGCCGTGCCTAGCTTTGTTTGCTTCTCCTACACCCGTGTGTTATGGTAGCACGCTCGTGTAT
98367742 TGTTGTACATGGCTGAACGTCACGGGCGTGCCTCACGCCCGTGTCGAAGAAACAGAATCAAGCCT
196 TGTTGTACATGGCTGAACGTCACGGGCGTGCCTCACGCCCGTGTCGAAGAAACAGAATCAAGCCT
*
98367807 TGTCCCTGGCATGCCCGTGGTTTTCCATCCTCACGCCCGTGGTCTCCTATCAAGTTCACCCACGA
261 TGTCCCTGGCATGCCCGTGGTTTTCCATCCTCACACCCGTGGTCTCCTATCAAGTTCACCCACGA
98367872 CCATGTAGCACGACCGTGGAGATTTATCGCACCCTATGTTTTGGGGAAATCATGTCCTGCTTCT
326 CCATGTAGCACGACCGTGGAGATTTATCGCACCCTATGTTTTGGGGAAATCATGTCCTGCTTCT
* *
98367936 ACACGGCCTAGGGCCACGCCCGTGTACTTTGAGGGTGAGCCCGTG-TTTTCAAATTTTGCGATTT
1 ACACGGCCTAGGGCCACGCCCGTGTACATTGAGGGTGAGCCCGTGTTTTTCAAATTTTACGATTT
* *
98368000 AGGTCGTCCCCGGCTAATATCCCACGCCCGTGTGTCTTGGGCGTGCATCGGACACGGCCATGTCG
66 AGGTCGTCCCCGGCTAATATCCCACGCCAGTGTGTCTTGGGCATGCATCGGACACGGCCATGTCG
98368065 CACGGCCGTGCCTAGCTTTGTTTGCTTCTCCTACACCCGTGTGTTATGGTAGCACGCTCGTGTAT
131 CACGGCCGTGCCTAGCTTTGTTTGCTTCTCCTACACCCGTGTGTTATGGTAGCACGCTCGTGTAT
98368130 TGTTGTACATGGCTGAACGTCACGGGCGTGCCTCACGCCCGTGTCGAAGAAACAGAATCAAGCCT
196 TGTTGTACATGGCTGAACGTCACGGGCGTGCCTCACGCCCGTGTCGAAGAAACAGAATCAAGCCT
98368195 TGTCCCTGGCATGCCCGTGGTTTTCCATCCTCACACCCGTGGTCTCCTATCAAGTTCACCCACGA
261 TGTCCCTGGCATGCCCGTGGTTTTCCATCCTCACACCCGTGGTCTCCTATCAAGTTCACCCACGA
98368260 CCATGTAGCACGACCGTGGAGATTTATCGCACCCTATGTTTTGGGGAAATCATGTCCTGCTTCT
326 CCATGTAGCACGACCGTGGAGATTTATCGCACCCTATGTTTTGGGGAAATCATGTCCTGCTTCT
98368324 ACACGGCC
1 ACACGGCC
98368332 GTATCGTACG
Statistics
Matches: 387, Mismatches: 9, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
388 344 0.89
389 43 0.11
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.27
Consensus pattern (389 bp):
ACACGGCCTAGGGCCACGCCCGTGTACATTGAGGGTGAGCCCGTGTTTTTCAAATTTTACGATTT
AGGTCGTCCCCGGCTAATATCCCACGCCAGTGTGTCTTGGGCATGCATCGGACACGGCCATGTCG
CACGGCCGTGCCTAGCTTTGTTTGCTTCTCCTACACCCGTGTGTTATGGTAGCACGCTCGTGTAT
TGTTGTACATGGCTGAACGTCACGGGCGTGCCTCACGCCCGTGTCGAAGAAACAGAATCAAGCCT
TGTCCCTGGCATGCCCGTGGTTTTCCATCCTCACACCCGTGGTCTCCTATCAAGTTCACCCACGA
CCATGTAGCACGACCGTGGAGATTTATCGCACCCTATGTTTTGGGGAAATCATGTCCTGCTTCT
Done.