Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 316 of 425
Found at i:98374657 original size:47 final size:47
Alignment explanation
Indices: 98374587--98375022 Score: 737
Period size: 47 Copynumber: 9.3 Consensus size: 47
98374577 CCCTTCGGGA
* * * *
98374587 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98374634 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98374681 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
98374728 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98374775 CTTGTCACATATATACACATTCACATTCTTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
98374822 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
98374869 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98374916 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98374963 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98375010 TTTACCACATATA
1 CTTATCACATATA
98375023 CATATCTTAT
Statistics
Matches: 369, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 369 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Found at i:98377487 original size:28 final size:28
Alignment explanation
Indices: 98377422--98377522 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98377412 ATAGTGAATC
*
98377422 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
98377451 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98377479 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
98377509 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98377523 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98384872 original size:68 final size:70
Alignment explanation
Indices: 98384800--98384997 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
98384790 ACACCCTGTA
* * * *
98384800 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
98384862 ATAAAT
65 ATAAAT
*
98384868 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
98384933 ATAAAT
65 ATAAAT
*
98384939 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
98384998 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:98384911 original size:41 final size:41
Alignment explanation
Indices: 98384866--98384983 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
98384856 TGAAAGATAA
98384866 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
98384907 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98384937 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98384978 ATGTAG
1 ATGTAG
98384984 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:98384923 original size:71 final size:71
Alignment explanation
Indices: 98384834--98384997 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98384824 GAGATGTATC
98384834 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98384899 AGGACA
66 AGGACA
98384905 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98384970 AGGACA
66 AGGACA
98384976 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98384998 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98392436 original size:68 final size:70
Alignment explanation
Indices: 98392364--98392561 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
98392354 ACACCCTGTA
* * * *
98392364 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
98392426 ATAAAT
65 ATAAAT
*
98392432 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
98392497 ATAAAT
65 ATAAAT
*
98392503 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
98392562 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:98392475 original size:41 final size:41
Alignment explanation
Indices: 98392430--98392547 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
98392420 TGAAAGATAA
98392430 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
98392471 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98392501 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98392542 ATGTAG
1 ATGTAG
98392548 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:98392487 original size:71 final size:71
Alignment explanation
Indices: 98392398--98392561 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98392388 GAGATGTATC
98392398 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98392463 AGGACA
66 AGGACA
98392469 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98392534 AGGACA
66 AGGACA
98392540 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98392562 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98400568 original size:26 final size:26
Alignment explanation
Indices: 98400532--98400602 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
98400522 CATGGGCGTG
**
98400532 CTGTCTGGCCGTGTGTCCCCGGTGTA
1 CTGTCTGGCCGTGTGTCCCCGGCATA
* *
98400558 CTGTCTGGCCGTGTGTCCTCGGCATG
1 CTGTCTGGCCGTGTGTCCCCGGCATA
*
98400584 CTATCTGGCCGTGTGTCCC
1 CTGTCTGGCCGTGTGTCCC
98400603 TTGCACGTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.04, C:0.32, G:0.32, T:0.31
Consensus pattern (26 bp):
CTGTCTGGCCGTGTGTCCCCGGCATA
Found at i:98406922 original size:11 final size:11
Alignment explanation
Indices: 98406908--98406934 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98406898 GTAAACATCA
98406908 AAAATAATTTT
1 AAAATAATTTT
98406919 AAAATAATTTT
1 AAAATAATTTT
98406930 AAAAT
1 AAAAT
98406935 CTCAAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:98409283 original size:367 final size:367
Alignment explanation
Indices: 98408610--98409339 Score: 1289
Period size: 367 Copynumber: 2.0 Consensus size: 367
98408600 AGCAAGACGA
* * *
98408610 TCCATCCCAAAAGCCGGAACTACTCGAAAATTGAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
1 TCCATCCCAAAAGCCGAAACTACTCCAAAACTGAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
*
98408675 AGAGTTTTCTTCATGTTTTTTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
66 AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
* *
98408740 AACCCCTTAGATACCTAAGGGGGATAAAACCTATGATGGATCTTGTTATTATTATCTGAACTGTA
131 AACCCCTTAGATACCTAACGGGGATAAAACCTATGATGGATCTTATTATTATTATCTGAACTGTA
* *
98408805 TGATAAATACTTGATTTGATTTTAATTATGTGTTTTTAATGCTTGAGTTAATATTCTAGGTATTA
196 TGATAAATACTTGATTTGATTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAGGTATTA
98408870 ATTCATGATTTGATGTGCTTATATAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGCATAA
261 ATTCATGATTTGATGTGCTTATATAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGCATAA
*
98408935 TTAGGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
326 TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
* * * *
98408977 TCCATCCCAAAAGCCGAAACTATTCCAAGACTGGAGATCTCTCTCAGAATTCCTTTAGGGGTTTT
1 TCCATCCCAAAAGCCGAAACTACTCCAAAACTGAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
*
98409042 AGAGTTTTCTTCGTGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
66 AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
*
98409107 AACCCCTTAGATACCTAACGGGGATAAAACCTATGTTGGATCTTATTATTATTATCTGAACTGTA
131 AACCCCTTAGATACCTAACGGGGATAAAACCTATGATGGATCTTATTATTATTATCTGAACTGTA
* *
98409172 TGATAAATATTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAGGTATTA
196 TGATAAATACTTGATTTGATTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAGGTATTA
* *
98409237 ATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGCATAA
261 ATTCATGATTTGATGTGCTTATATAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGCATAA
98409302 TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTAC
326 TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTAC
98409340 TAGATTTTTT
Statistics
Matches: 344, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
367 344 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (367 bp):
TCCATCCCAAAAGCCGAAACTACTCCAAAACTGAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
AACCCCTTAGATACCTAACGGGGATAAAACCTATGATGGATCTTATTATTATTATCTGAACTGTA
TGATAAATACTTGATTTGATTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAGGTATTA
ATTCATGATTTGATGTGCTTATATAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGCATAA
TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
Found at i:98414898 original size:46 final size:46
Alignment explanation
Indices: 98414845--98415020 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98414835 TATTTGGGCA
98414845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98414891 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98414938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98414984 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98415021 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98415000 original size:93 final size:93
Alignment explanation
Indices: 98414841--98415012 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98414831 GGGATATTTG
* *
98414841 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98414906 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98414934 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98414999 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98415013 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98417418 original size:40 final size:39
Alignment explanation
Indices: 98417253--98417436 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
98417243 AAATTGAATG
* * *
98417253 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
98417293 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
98417333 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
98417373 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
98417412 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
98417437 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:98417461 original size:80 final size:81
Alignment explanation
Indices: 98417293--98417481 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
98417283 GCTGGAAATT
* * * *
98417293 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
98417358 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
98417374 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
98417437 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
98417453 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
98417482 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:98424645 original size:40 final size:40
Alignment explanation
Indices: 98424601--98424706 Score: 128
Period size: 40 Copynumber: 2.6 Consensus size: 40
98424591 GAAATTATAA
* *
98424601 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTAT
*
98424641 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTAT
*
98424681 CCGGGCTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGACCCGAAGGCAATTGT
98424707 ACAAATCGTG
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
38 1 0.02
39 5 0.09
40 50 0.86
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTAT
Found at i:98424722 original size:40 final size:40
Alignment explanation
Indices: 98424639--98424740 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
98424629 TAGTGGCTAC
* * * **
98424639 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTACAAATCATGAT
* *
98424679 ATCCGGGCTAAGACCCGAAGGCATTTGTACAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTACAAATCATGAT
* * *
98424719 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
98424741 CTTGGTGGGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTACAAATCATGAT
Found at i:98427627 original size:15 final size:14
Alignment explanation
Indices: 98427607--98427693 Score: 70
Period size: 14 Copynumber: 6.1 Consensus size: 14
98427597 TCCTCCTATC
98427607 TTTTTATTCTTATTT
1 TTTTTATT-TTATTT
98427622 TTTTTA-TTTATTT
1 TTTTTATTTTATTT
98427635 TATTTTATTTTATTT
1 T-TTTTATTTTATTT
* *
98427650 TTCTTT-TTATTACTA
1 TT-TTTATT-TTATTT
* * *
98427665 TTTTCATTTCAATT
1 TTTTTATTTTATTT
*
98427679 TTATTATTTTATTT
1 TTTTTATTTTATTT
98427693 T
1 T
98427694 GAAAGACATA
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
13 7 0.12
14 25 0.44
15 25 0.44
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTATTTTATTT
Found at i:98427628 original size:9 final size:9
Alignment explanation
Indices: 98427616--98427651 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
98427606 CTTTTTATTC
98427616 TTATTTTTT
1 TTATTTTTT
*
98427625 TTATTTATT
1 TTATTTTTT
98427634 TTATTTTATT
1 TTATTTT-TT
98427644 TTATTTTT
1 TTATTTTT
98427652 CTTTTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TTATTTTTT
Found at i:98427656 original size:6 final size:6
Alignment explanation
Indices: 98427607--98427660 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
98427597 TCCTCCTATC
* * *
98427607 TTTTTA TTCTTA TTTTTT TTATTTA -TTTTA -TTTTA -TTTTA TTTTTC
1 TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA
98427653 TTTTTA TT
1 TTTTTA TT
98427661 ACTATTTTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 14 0.35
6 23 0.57
7 3 0.08
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:98427693 original size:5 final size:5
Alignment explanation
Indices: 98427608--98427650 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
98427598 CCTCCTATCT
98427608 TTTTA TTCTTA TTTT- TTTTA -TTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
98427651 TCTTTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 8 0.23
5 22 0.63
6 5 0.14
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:98430604 original size:13 final size:13
Alignment explanation
Indices: 98430588--98430620 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98430578 TTTAATTAAA
*
98430588 TTAGTTAATTAGT
1 TTAGATAATTAGT
98430601 TTAGATAATTAGT
1 TTAGATAATTAGT
98430614 TTA-ATAA
1 TTAGATAA
98430621 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98440957 original size:48 final size:48
Alignment explanation
Indices: 98440890--98441116 Score: 170
Period size: 48 Copynumber: 4.7 Consensus size: 48
98440880 GTGAATTGTC
* * * *
98440890 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
* * * * * *
98440938 GATGCCCTGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
* * * * ** *
98440986 GATGCCATGTCCCAGACATGGTCATACACCGGCTCTCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGGCT
* * * * * * * *
98441034 AATGCCATGTCCTAGTCATGGTCTTACACTAG-TGCATATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CACATCTCAAGGCT
* * *
98441082 GATGCCATGTCCCAAACATGGTCGTACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
98441117 TCACAACATC
Statistics
Matches: 138, Mismatches: 37, Indels: 8
0.75 0.20 0.04
Matches are distributed among these distances:
47 3 0.02
48 133 0.96
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
Found at i:98441054 original size:96 final size:95
Alignment explanation
Indices: 98440889--98441159 Score: 260
Period size: 96 Copynumber: 2.8 Consensus size: 95
98440879 GGTGAATTGT
* * * * * ** *
98440889 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGGCTGATGCCCTGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCTCATAAT-GTGGCCAATGCCATGT-CCAG
* * *
98440953 ACATGGTCTTACACTAGCT-C-TCGTCTCAATGT
64 ACATGGTCTTACACTAG-TGCAT-ATATCAATGC
* * * *
98440985 TGATGCCATGTCCCAGACATGGTCATACACCGGCTCTCATAATGTGGCCAATGCCATGTCCTAGT
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCTCATAATGTGGCCAATGCCATGTCC-AGA
98441050 CATGGTCTTACACTAGTGCATATATCAATGC
65 CATGGTCTTACACTAGTGCATATATCAATGC
* * * ** ** *
98441081 CGATGCCATGTCCCAAACATGGTCGTACACTAGCTCTCACAACATCACCAATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCTCATAATGTGGCCAATGCCATG-TCCAGA
98441146 CATGGTCTTACACT
65 CATGGTCTTACACT
98441160 GACTCCCATA
Statistics
Matches: 143, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
95 3 0.02
96 135 0.94
97 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAAACATGGTCATACACTGGCTCTCATAATGTGGCCAATGCCATGTCCAGAC
ATGGTCTTACACTAGTGCATATATCAATGC
Found at i:98441198 original size:144 final size:144
Alignment explanation
Indices: 98440893--98441203 Score: 308
Period size: 144 Copynumber: 2.2 Consensus size: 144
98440883 AATTGTCGAT
* * * * * *
98440893 GCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCCTGTCCCAGACATG
1 GCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAACATG
* * * **** * * *
98440958 GTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAGACATGGTCATACACCGGCTCTC
66 GTCGTACACTAGCTCTCGACACAATACCAATGCCATGTCCCAAACATGGTCATACACCGACTCCC
*
98441023 ATAATGTGGCCAAT
131 ATAATGTGGCCAAC
** * *
98441037 GCCATG-TCCTAGTCATGGTCTTACACTAG-TGCATATATCAATGCCGATGCCATGTCCCAAACA
1 GCCATGTTCC-AAACATGGTCTTACACTAGCT-CACATATCAAGGCCGATGCCATGTCCCAAACA
* * *
98441100 TGGTCGTACACTAGCTCTC-ACA-ACATCACCAATGCCATGTTCCAAACATGGTCTTACACTGAC
64 TGGTCGTACACTAGCTCTCGACACA-AT-ACCAATGCCATGTCCCAAACATGGTCATACACCGAC
* *
98441163 TCCCATATTGT-GCCTGAC
127 TCCCATAATGTGGCC-AAC
98441181 GCCATGTTCCAAACATGGTCTTA
1 GCCATGTTCCAAACATGGTCTTA
98441204 TGTTGGCACA
Statistics
Matches: 133, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
142 1 0.01
143 10 0.08
144 119 0.89
145 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
GCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAACATG
GTCGTACACTAGCTCTCGACACAATACCAATGCCATGTCCCAAACATGGTCATACACCGACTCCC
ATAATGTGGCCAAC
Found at i:98473241 original size:21 final size:21
Alignment explanation
Indices: 98473189--98473246 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
98473179 ATTTTATTAC
*
98473189 TACCAGGATGAATAATCATAT
1 TACCAGGATGAATAGTCATAT
*
98473210 TACTAGGATGAATAGTCATAT
1 TACCAGGATGAATAGTCATAT
**
98473231 TACCATTATGAATAGT
1 TACCAGGATGAATAGT
98473247 AAATGACATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.33
Consensus pattern (21 bp):
TACCAGGATGAATAGTCATAT
Found at i:98479366 original size:40 final size:40
Alignment explanation
Indices: 98479302--98479492 Score: 174
Period size: 39 Copynumber: 4.8 Consensus size: 40
98479292 GCTACTCGTT
* * ***
98479302 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACCCGCA
* *
98479342 CAAATGCCTTCGGGAC-TTGACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACATAG-CCCGGATATCACAACCCGCA
* * * * * *
98479382 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGTA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACCCGCA
* * * *
98479421 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACCCGCA
* *
98479460 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAA
98479493 TTCGCACATT
Statistics
Matches: 132, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATATCACAACCCGCA
Found at i:98479427 original size:39 final size:39
Alignment explanation
Indices: 98479338--98479500 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
98479328 TATGGTAACC
*
98479338 CGCACAAATGCCTTCGGGACTT-GACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAG-CCCGGATATCACAACT
* *
98479378 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
98479417 CGTACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
98479456 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
98479495 CGCACA
1 CGCACA
98479501 TTCATACACA
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 94 0.84
40 18 0.16
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:98504996 original size:42 final size:43
Alignment explanation
Indices: 98504896--98505058 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
98504886 CAATGCTAAC
***
98504896 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACAAAATCAAATATCGATGCCACT
* * *
98504939 GTCCCAGATAGGGTCTTACACAAAATTAAATAT-GATGCCGA-T
1 GTCCCAGACATGGTCTTACACAAAATCAAATATCGATGCC-ACT
* * *
98504981 GTCCCAGAGATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-
1 GTCCCAGACATGGTCTTACAC-AAAATC-AAATATCGATGCC-ACT
* * * *
98505025 ATCCCAGACGTGGTCTTACATAAAATCACATATC
1 GTCCCAGACATGGTCTTACACAAAATCAAATATC
98505059 AGAAATCCTA
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 27 0.28
43 42 0.44
44 26 0.27
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACAAAATCAAATATCGATGCCACT
Found at i:98510570 original size:55 final size:54
Alignment explanation
Indices: 98510462--98510716 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
98510452 ATTAAGGTTT
* * *
98510462 AAGGATACCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * *
98510517 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGGTAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * *
98510572 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
98510625 AAGGATACCATGTAAGACCATGTCAAGACATGCCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
98510674 AAGGATACCACGTAAGACCATGACAA-ATCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCATTGGTAAG
98510717 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
48 1 0.01
49 38 0.22
52 6 0.04
53 44 0.26
54 9 0.05
55 68 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:98510665 original size:108 final size:110
Alignment explanation
Indices: 98510469--98510669 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
98510459 TTTAAGGATA
*
98510469 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
98510534 CCATGTCAAGACATGACATTGGTAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGGTAAGTTACTATAAGGCAAAGGTC
* * *
98510579 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
98510641 ACCATGTCAAGACATGCCAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGGTAAGTT
98510670 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGACAATGGTAAGTTACTATAAGGCAAAGGTC
Found at i:98513989 original size:23 final size:23
Alignment explanation
Indices: 98513963--98514034 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
98513953 TAGTTAAGAC
98513963 ATAAAGCATACATGTTATCATAT
1 ATAAAGCATACATGTTATCATAT
** * *
98513986 ATAAA-C-TTGATGGGTTA--AGAC
1 ATAAAGCATACAT--GTTATCATAT
98514007 ATAAAGCATACATGTTATCATAT
1 ATAAAGCATACATGTTATCATAT
98514030 ATAAA
1 ATAAA
98514035 CTTGATTAGC
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
21 14 0.40
22 2 0.06
23 19 0.54
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.32
Consensus pattern (23 bp):
ATAAAGCATACATGTTATCATAT
Found at i:98514018 original size:44 final size:44
Alignment explanation
Indices: 98513955--98514040 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
98513945 TCATGGTTTA
98513955 GTTAAGACATAAAGCATACATGTTATCATATATAAACTTGATGG
1 GTTAAGACATAAAGCATACATGTTATCATATATAAACTTGATGG
98513999 GTTAAGACATAAAGCATACATGTTATCATATATAAACTTGAT
1 GTTAAGACATAAAGCATACATGTTATCATATATAAACTTGAT
98514041 TAGCCATTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.33
Consensus pattern (44 bp):
GTTAAGACATAAAGCATACATGTTATCATATATAAACTTGATGG
Found at i:98514023 original size:21 final size:21
Alignment explanation
Indices: 98513955--98514023 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
98513945 TCATGGTTTA
98513955 GTTAAGACATAAAGCATACAT
1 GTTAAGACATAAAGCATACAT
* * **
98513976 GTTATCATATATAAA-C-TTGAT
1 GTTA--AGACATAAAGCATACAT
98513997 GGGTTAAGACATAAAGCATACAT
1 --GTTAAGACATAAAGCATACAT
98514020 GTTA
1 GTTA
98514024 TCATATATAA
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
21 18 0.53
22 2 0.06
23 14 0.41
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (21 bp):
GTTAAGACATAAAGCATACAT
Found at i:98514669 original size:46 final size:46
Alignment explanation
Indices: 98514602--98514726 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
98514592 TGTAACCCGC
* * * *
98514602 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
98514648 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
98514694 CCATAAGTGAACTCGGACTCAACTCGACGAGCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
98514727 TAGATGCCTA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:98524973 original size:46 final size:46
Alignment explanation
Indices: 98524903--98525031 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 46
98524893 TGTAACCCAC
* * *
98524903 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
98524949 CCATAAGTGAACTCGGACGT-AACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGTGAACTCGGAC-TCAACTCAACGAGCTCGGGCATTCGCAT
* **
98524995 CTATAAGTGAACTCGGACTCAACTCAATTAGCTCGGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGG
98525032 TGCCCAAATA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
45 1 0.01
46 70 0.97
47 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:98535648 original size:32 final size:32
Alignment explanation
Indices: 98535611--98535674 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
98535601 AGAAGTAAGA
98535611 AAACTGACAATCTTTTTATTGAGAAGTTCTAC
1 AAACTGACAATCTTTTTATTGAGAAGTTCTAC
*
98535643 AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
1 AAACTGACAATCTTTTTATTGAGAAGTTCTAC
98535675 CTGATTTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (32 bp):
AAACTGACAATCTTTTTATTGAGAAGTTCTAC
Found at i:98542211 original size:19 final size:20
Alignment explanation
Indices: 98542187--98542225 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
98542177 TCTTATTTTT
98542187 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
98542206 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
98542226 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:98542243 original size:25 final size:23
Alignment explanation
Indices: 98542187--98542251 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
98542177 TCTTATTTTT
*
98542187 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
98542206 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
98542229 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
98542252 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:98542302 original size:5 final size:5
Alignment explanation
Indices: 98542292--98542321 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
98542282 TTTTTAATAT
98542292 GGCCG GGCCG GGCCG GGCCG GGCTCG GGCC
1 GGCCG GGCCG GGCCG GGCCG GGC-CG GGCC
98542322 TACCATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.00, C:0.40, G:0.57, T:0.03
Consensus pattern (5 bp):
GGCCG
Found at i:98542529 original size:16 final size:16
Alignment explanation
Indices: 98542508--98542546 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
98542498 GTAGATCGGC
*
98542508 AAAAGCCTAAATACCG
1 AAAAGCCGAAATACCG
*
98542524 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCG
98542540 AAAAGCC
1 AAAAGCC
98542547 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:98542810 original size:30 final size:29
Alignment explanation
Indices: 98542774--98542878 Score: 117
Period size: 30 Copynumber: 3.6 Consensus size: 29
98542764 ATAAGGTGAT
98542774 TTGGGCCTAATGGGCCATATGAATATGAAA
1 TTGGGCC-AATGGGCCATATGAATATGAAA
* *
98542804 TTGGGCCTGATGGGCCATATGAATGTG-AA
1 TTGGGCC-AATGGGCCATATGAATATGAAA
* * *
98542833 TCGGGCCGATGGGCCATAT-AA-ATGAGA
1 TTGGGCCAATGGGCCATATGAATATGAAA
98542860 TTGGGCCAAGTGGGCCATA
1 TTGGGCCAA-TGGGCCATA
98542879 CGCATGTATA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
26 2 0.03
27 10 0.15
28 21 0.32
29 8 0.12
30 25 0.38
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
TTGGGCCAATGGGCCATATGAATATGAAA
Found at i:98542856 original size:28 final size:28
Alignment explanation
Indices: 98542769--98542878 Score: 114
Period size: 28 Copynumber: 3.8 Consensus size: 28
98542759 TGCGTATAAG
* *
98542769 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCC-GATGGGCCATATGAAT
*
98542798 ATGAAATTGGGCCTGATGGGCCATATGAAT
1 GTG-AATTGGGCC-GATGGGCCATATGAAT
* *
98542828 GTGAATCGGGCCGATGGGCCATATAAAT
1 GTGAATTGGGCCGATGGGCCATATGAAT
* *
98542856 GAG-ATTGGGCCAAGTGGGCCATA
1 GTGAATTGGGCCGA-TGGGCCATA
98542879 CGCATGTATA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 8 0.11
28 26 0.37
29 10 0.14
30 26 0.37
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (28 bp):
GTGAATTGGGCCGATGGGCCATATGAAT
Found at i:98545155 original size:42 final size:41
Alignment explanation
Indices: 98545094--98545206 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 41
98545084 AATGCTACTA
* * *
98545094 TCCCAGACAGGGTCTTACACGAAATCAAATACGATACCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAAT-CGATACCAACG
* *
98545136 TCCTAGACATGGTCTTACACGTAAATATCAAATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG--AA-ATCAAATCGATACCAACG
**
98545180 TCCCAGATGTGGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
98545207 CATATCGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 4 0.07
42 21 0.35
44 28 0.47
45 7 0.12
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAATCAAATCGATACCAACG
Found at i:98548627 original size:48 final size:48
Alignment explanation
Indices: 98548575--98548694 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
98548565 TATGTGTGCT
* * *
98548575 AGTGTTAGACATGTCTGGGACATGCATCGGTCTTGAGATATACTAGCC
1 AGTGTTAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
* * *
98548623 AGTGTAAGACATGTCTGGGAAATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTTAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
*
98548671 AGT-TTAAGACCTGTCTGGGACATG
1 AGTGTT-AGACATGTCTGGGACATG
98548695 GTGTCAGCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTTAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
Found at i:98548793 original size:49 final size:49
Alignment explanation
Indices: 98548728--98548844 Score: 153
Period size: 49 Copynumber: 2.4 Consensus size: 49
98548718 GTAAAACTTG
* * *
98548728 TCTGGGACATGGCATCGATATCAATAGATGAGAGCCAGTGTAAGACCTA
1 TCTGGGACATGACATCGACATCAATAGATGAAAGCCAGTGTAAGACCTA
* * * * * *
98548777 TCTGGGACATGTCATCGGCCTCGATATATGAAAGTCAGTGTAAGACCTA
1 TCTGGGACATGACATCGACATCAATAGATGAAAGCCAGTGTAAGACCTA
98548826 TCTGGGACATGACATCGAC
1 TCTGGGACATGACATCGAC
98548845 TTTGATGTGC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
TCTGGGACATGACATCGACATCAATAGATGAAAGCCAGTGTAAGACCTA
Found at i:98559295 original size:407 final size:408
Alignment explanation
Indices: 98558511--98559329 Score: 1462
Period size: 407 Copynumber: 2.0 Consensus size: 408
98558501 AATACTCAAC
*
98558511 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACGGATTA
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
*
98558576 TTTTGAGATATTATTGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGAT
66 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGAT
*
98558641 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
131 TTTGCTTAGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
98558706 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
196 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
*
98558771 AATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
261 AATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGAC
*
98558836 GAAAAACAGAGAAAATGGGCCAAAGTAAGAAATCGACACGGCTTGAACCTCCTCACACGGGCAGA
326 GAAAAACAGAGAAAATGGGCCAAAGTAAGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
98558901 CCACACGGCCGTACCAAT
391 CCACACGGCCGTACCAAT
98558919 TTGGAATGTTTGAAACTTTTATGTT-TTTTAGTTGAATTCT-AATTGTATGATTACCTACAGATT
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAA-TGTATGATTACCTACAGATT
98558982 ATTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGA
65 ATTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGA
**
98559047 TTTTGCTTAGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATATGTAT
130 TTTTGCTTAGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATAT
* * *
98559112 TTTTACCCCATGTTTAATGCATTTTATGTATGATTTCTCATTAGATTTAGTGAATTCGATGCTCC
195 TTTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCC
* *
98559177 TAGTGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGA
260 TAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGA
* * * *
98559242 CGAAAAACAGAGAAAATGGGCCAAAGTACGGAATTGACACGGCCTGGACCTCCTCACACGGGCAG
325 CGAAAAACAGAGAAAATGGGCCAAAGTAAGAAATCGACACGGCCTGAACCTCCTCACACGGGCAG
*
98559307 ACCACACGGCCGTGCCAAT
390 ACCACACGGCCGTACCAAT
98559326 TTGG
1 TTGG
98559330 TAGGCTCGAA
Statistics
Matches: 393, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
406 2 0.01
407 366 0.93
408 25 0.06
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (408 bp):
TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGAT
TTTGCTTAGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
AATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGAC
GAAAAACAGAGAAAATGGGCCAAAGTAAGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
CCACACGGCCGTACCAAT
Found at i:98563962 original size:70 final size:71
Alignment explanation
Indices: 98563811--98563973 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
98563801 GAGATGTATC
98563811 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98563876 AGGACA
66 AGGACA
98563882 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
98563946 CGGACA
66 AGGACA
98563952 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98563974 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98571408 original size:71 final size:71
Alignment explanation
Indices: 98571320--98571483 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
98571310 GAGATGTATC
98571320 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98571385 AGGACA
66 AGGACA
*
98571391 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
98571456 CGGACA
66 AGGACA
98571462 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98571484 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98579188 original size:28 final size:26
Alignment explanation
Indices: 98579124--98579189 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
98579114 AGCAATGCTG
98579124 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
* *
98579151 CCAGA-GCAGTAATTACGTGGCAAAGCCA
1 CTA-ATACAGTAA--ACGTGGCAAAGCCA
98579179 CTAATACAGTA
1 CTAATACAGTA
98579190 CTTCCTCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
26 6 0.19
27 3 0.10
28 22 0.71
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:98592835 original size:28 final size:29
Alignment explanation
Indices: 98592782--98592841 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
98592772 AAAGCATGAC
*
98592782 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
* *
98592811 TATGAATGAGA-TTGGGCCTAGTGGGCTA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
98592839 TAT
1 TAT
98592842 ACATGTATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 18 0.64
29 10 0.36
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.32
Consensus pattern (29 bp):
TATGAATGAGATTTGGGCCTAATGGGCCA
Found at i:98595788 original size:46 final size:46
Alignment explanation
Indices: 98595735--98595910 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98595725 TATTTGGGCA
98595735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98595781 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98595828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98595874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98595911 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98595890 original size:93 final size:93
Alignment explanation
Indices: 98595731--98595902 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98595721 GGGATATTTG
* *
98595731 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98595796 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98595824 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98595889 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98595903 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98598841 original size:15 final size:15
Alignment explanation
Indices: 98598821--98598889 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98598811 GTATCTTGGG
98598821 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98598836 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98598851 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98598866 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98598881 TTTCTTTAT
1 TTTCTTTAT
98598890 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98598890 original size:30 final size:30
Alignment explanation
Indices: 98598812--98598899 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98598802 CATAGTATCG
* * * *
98598812 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98598842 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98598872 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98598900 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98601332 original size:46 final size:46
Alignment explanation
Indices: 98601282--98601457 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98601272 TATTTGGGCA
98601282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98601328 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98601375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98601421 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98601458 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98601437 original size:93 final size:93
Alignment explanation
Indices: 98601278--98601449 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98601268 TGGATATTTG
* *
98601278 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98601343 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98601371 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98601436 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98601450 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98603480 original size:28 final size:28
Alignment explanation
Indices: 98603415--98603515 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98603405 ATAGTGAATC
*
98603415 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
98603444 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98603472 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
98603502 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98603516 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98611427 original size:28 final size:28
Alignment explanation
Indices: 98611362--98611462 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98611352 ATAGTGAATC
*
98611362 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
98611391 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98611419 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
98611449 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98611463 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98615801 original size:40 final size:40
Alignment explanation
Indices: 98615744--98616171 Score: 669
Period size: 40 Copynumber: 10.7 Consensus size: 40
98615734 CCAGCATGAT
** * *
98615744 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
98615784 TACTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
98615824 TGCCCTTCGGGGCTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
98615864 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
98615904 TGCCCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
98615944 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
98615984 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
98616024 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
98616064 TGCTCTTTGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
98616104 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
98616144 TGCTCTTCGGGACTTAACCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
98616172 GTCGAGACCT
Statistics
Matches: 355, Mismatches: 33, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 4 0.01
40 351 0.99
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:98616296 original size:38 final size:38
Alignment explanation
Indices: 98616225--98616299 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
98616215 GAATTTTAAT
* *
98616225 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCAGGTCTTTAC
* *
98616263 CCGGACATAATCTCT-TCATATAGTCAGCAGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCAGGTCTTTA
98616300 AACTCGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCAGGTCTTTAC
Found at i:98618789 original size:47 final size:47
Alignment explanation
Indices: 98618719--98619193 Score: 786
Period size: 47 Copynumber: 10.3 Consensus size: 47
98618709 CCCTTCGGGA
* * * *
98618719 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98618766 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
98618813 CGTATCACATATATACACATT--CA--CA-CACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
98618855 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98618902 CTTATCACATATATACACATTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98618948 CTTATCACATATATACAGATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98618995 CTTATCACATATATACACATTCACATTC-TCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98619041 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98619088 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATT-GGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
98619134 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
98619181 TTTACCACATATA
1 CTTATCACATATA
98619194 CATATCTTAT
Statistics
Matches: 403, Mismatches: 17, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
42 37 0.09
43 2 0.00
44 2 0.00
45 2 0.00
46 135 0.33
47 225 0.56
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Found at i:98618987 original size:93 final size:93
Alignment explanation
Indices: 98618719--98619193 Score: 782
Period size: 93 Copynumber: 5.1 Consensus size: 93
98618709 CCCTTCGGGA
* * *
98618719 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCA-TTGGCCTTATCACATATATACAC
98618784 ATTCACATTCATCACATTGGCCATTCGGC
65 ATTCACATTCATCACATTGGCCATTCGGC
*
98618813 CGTATCACATATATACACATT--CA--CA-CACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATACAC
*
98618873 ATTCACATTCGTCACATTGGCCATTCGGC
65 ATTCACATTCATCACATTGGCCATTCGGC
*
98618902 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACAGA
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACACA
*
98618967 TTCACATTCGTCACATTGGCCATTCGGC
66 TTCACATTCATCACATTGGCCATTCGGC
98618995 CTTATCACATATATACACATTCACATTC-TCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATACAC
98619059 ATTCACATTCATCACATTGGCCATTCGGC
65 ATTCACATTCATCACATTGGCCATTCGGC
* *
98619088 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATTGGCCTTATCACATATATACACA
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACACA
98619153 TTCACATTCATCACATTGGCCATTCGGC
66 TTCACATTCATCACATTGGCCATTCGGC
* *
98619181 TTTACCACATATA
1 CTTATCACATATA
98619194 CATATCTTAT
Statistics
Matches: 362, Mismatches: 11, Indels: 17
0.93 0.03 0.04
Matches are distributed among these distances:
88 2 0.01
89 80 0.22
90 2 0.01
91 2 0.01
92 16 0.04
93 215 0.59
94 45 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACACA
TTCACATTCATCACATTGGCCATTCGGC
Found at i:98634738 original size:47 final size:46
Alignment explanation
Indices: 98634620--98634793 Score: 189
Period size: 45 Copynumber: 3.8 Consensus size: 46
98634610 GGGATATTTG
*
98634620 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
98634667 TG--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
*
98634712 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCG-A
* *
98634760 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
98634794 TATGGGCGGG
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.04
44 2 0.02
45 32 0.30
46 30 0.28
47 31 0.29
48 5 0.05
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:98634789 original size:46 final size:46
Alignment explanation
Indices: 98634625--98634798 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
98634615 ATTTGGGCAT
* *
98634625 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
98634670 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
98634715 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
98634763 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98634799 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
44 2 0.02
45 29 0.26
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:98637766 original size:15 final size:15
Alignment explanation
Indices: 98637746--98637814 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98637736 GTATCTTGGG
98637746 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98637761 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98637776 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98637791 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98637806 TTTCTTTAT
1 TTTCTTTAT
98637815 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98637815 original size:30 final size:30
Alignment explanation
Indices: 98637737--98637824 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98637727 CATAGTATCG
* * * *
98637737 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98637767 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98637797 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98637825 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98639788 original size:46 final size:46
Alignment explanation
Indices: 98639735--98639910 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
98639725 TATTTGGGCA
98639735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98639781 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98639826 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98639874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98639911 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98639890 original size:93 final size:93
Alignment explanation
Indices: 98639731--98639903 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
98639721 GGGATATTTG
* *
98639731 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98639796 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98639824 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98639889 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
98639904 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98649074 original size:117 final size:117
Alignment explanation
Indices: 98648868--98649101 Score: 450
Period size: 117 Copynumber: 2.0 Consensus size: 117
98648858 ATCTTTGCCA
*
98648868 TTTTCCACGGAATATAGAAATCGATACTTGGTAGCAATTCATATTTAACAAGTAGCACACATAAT
1 TTTTCCACGGAATATAGAAATCGATACTCGGTAGCAATTCATATTTAACAAGTAGCACACATAAT
*
98648933 TTTCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATC
66 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATC
98648985 TTTTCCACGGAATATAGAAATCGATACTCGGTAGCAATTCATATTTAACAAGTAGCACACATAAT
1 TTTTCCACGGAATATAGAAATCGATACTCGGTAGCAATTCATATTTAACAAGTAGCACACATAAT
98649050 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATC
66 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATC
98649102 ATCATATCAT
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (117 bp):
TTTTCCACGGAATATAGAAATCGATACTCGGTAGCAATTCATATTTAACAAGTAGCACACATAAT
TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATC
Found at i:98652940 original size:29 final size:29
Alignment explanation
Indices: 98652906--98653039 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
98652896 TACTCGATTT
* * *
98652906 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
98652935 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
98652964 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
98652993 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
98653022 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
98653040 TATTTCCATC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:98652998 original size:58 final size:59
Alignment explanation
Indices: 98652905--98653095 Score: 219
Period size: 58 Copynumber: 3.3 Consensus size: 59
98652895 ATACTCGATT
** * ** * * *
98652905 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
98652963 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* * * *
98653022 T-GCACACTTAGTGCCATATATTTCCATCATGCACACTTAGTGCCATATATTTCCATCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
98653080 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
98653096 ATCTCGTCAC
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
57 4 0.03
58 114 0.96
59 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:98653027 original size:87 final size:87
Alignment explanation
Indices: 98652936--98653095 Score: 241
Period size: 87 Copynumber: 1.8 Consensus size: 87
98652926 ATTTAAGCCC
* *
98652936 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCATGCACAC
98653000 TTAGTGCCATATATTTCCAGCAT
65 TTAGTGCCATATATTTCCAGCAT
* * * * *
98653023 GCACACTTAGTGCCATATATTTCCATCATGCACACTTAGTGCCATATATTTCCATCATGCACACT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
98653088 TAGTGCCA
66 TAGTGCCA
98653096 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 64 0.98
88 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (87 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
TAGTGCCATATATTTCCAGCAT
Found at i:98653040 original size:29 final size:29
Alignment explanation
Indices: 98652965--98653095 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
98652955 CTTCGAGCTC
98652965 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
98652994 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
98653023 GCACACTTAGTGCCATATATTTCCATCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
98653052 GCACACTTAGTGCCATATATTTCCATCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
98653081 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
98653096 ATCTCGTCAC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:98657861 original size:8 final size:9
Alignment explanation
Indices: 98657840--98657864 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
98657830 TTGAGGAATC
98657840 GGGGGAGGT
1 GGGGGAGGT
98657849 GGGGGAGGT
1 GGGGGAGGT
98657858 GGGGGAG
1 GGGGGAG
98657865 AATTCGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.80, T:0.08
Consensus pattern (9 bp):
GGGGGAGGT
Found at i:98665282 original size:3 final size:3
Alignment explanation
Indices: 98665274--98665340 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
98665264 CTTTTTCTTC
98665274 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98665322 ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT A
98665341 AGAGTTCTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:98667227 original size:93 final size:93
Alignment explanation
Indices: 98667115--98667286 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
98667105 GCCCATAAGT
* *
98667115 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98667180 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
98667208 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
98667273 CGAGTTTGGATGCC
66 CGAGCTCGGATGCC
98667287 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:98667278 original size:46 final size:45
Alignment explanation
Indices: 98667107--98667276 Score: 209
Period size: 46 Copynumber: 3.7 Consensus size: 45
98667097 TGTAACCCGC
*
98667107 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
98667153 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
98667199 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
98667246 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
98667277 TTTGGATGCC
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 62 0.59
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:98667301 original size:46 final size:44
Alignment explanation
Indices: 98667112--98667301 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
98667102 CCCGCCCATA
* ** ** **
98667112 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
98667157 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
98667207 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
98667250 AAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
98667297 AGTGA
1 AGTGA
98667302 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 64 0.57
47 28 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:98676357 original size:39 final size:39
Alignment explanation
Indices: 98676198--98676349 Score: 245
Period size: 39 Copynumber: 3.9 Consensus size: 39
98676188 TGGTAACCCA
*
98676198 CACAAATGCCTTCGGGACTT-GACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAG-CCCGGATATCACAACTCG
* *
98676238 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
98676277 CAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
98676315 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
98676350 TTTGCACATT
Statistics
Matches: 105, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 16 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
Found at i:98676357 original size:77 final size:78
Alignment explanation
Indices: 98676204--98676359 Score: 253
Period size: 77 Copynumber: 2.0 Consensus size: 78
98676194 CCCACACAAA
98676204 TGCCTTCGGGACTTGACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTGACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
98676269 ATAGCTCGCACAT
66 ACAACTCGCACAT
98676282 TGCCTTCGGG-CTT-AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 TGCCTTCGGGACTTGA-CCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATAT
* *
98676345 CACAATTTGCACAT
65 CACAACTCGCACAT
98676359 T
1 T
98676360 CATACACATC
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 1 0.01
77 62 0.85
78 10 0.14
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (78 bp):
TGCCTTCGGGACTTGACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:98684225 original size:39 final size:39
Alignment explanation
Indices: 98684136--98684298 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
98684126 TATGGTAACC
*
98684136 CGCACAAATGCCTTCGGGACTT-GACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAG-CCCGGATATCACAACT
* *
98684176 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
98684215 TGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
98684254 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
98684293 CGCACA
1 CGCACA
98684299 TTCATACACA
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 94 0.84
40 18 0.16
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:98687695 original size:43 final size:42
Alignment explanation
Indices: 98687647--98687761 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 42
98687637 AGATTACATA
*
98687647 TAAGACCATGTCTGGGACATTGGCATTGTATTGCAATTATGAG
1 TAAGACCATGTCTGGGACATTGGCATTGTA-TGCAATTACGAG
* *
98687690 TAAGACCATGTCTGGGACATTGGCATCAT-TATGCGATTACGTG
1 TAAGACCATGTCTGGGACATTGGCAT--TGTATGCAATTACGAG
*
98687733 TAAGACAATGTCTGGGACATTGGCATTGT
1 TAAGACCATGTCTGGGACATTGGCATTGT
98687762 TATATGATTT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
41 1 0.02
42 1 0.02
43 60 0.92
44 2 0.03
45 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATTGTATGCAATTACGAG
Found at i:98690165 original size:42 final size:42
Alignment explanation
Indices: 98690011--98690166 Score: 97
Period size: 42 Copynumber: 3.7 Consensus size: 42
98690001 TGAGTTGTCG
* * * * * *
98690011 TGTAAGACCATGTTTGGGACGTTAGCGTC-AATTTGAGATTTACT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTT--GATTT-CA
* * * * *
98690055 TGTAAGACCATGCCTGGGACATAGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
* *
98690097 TGTAAGACC-CTGTCTAGGATAG-TGGCATCG-ATATTGATTAT-A
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGTAT-TTGATT-TCA
98690139 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
98690167 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
41 3 0.03
42 51 0.58
43 7 0.08
44 23 0.26
45 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
Found at i:98690765 original size:2 final size:2
Alignment explanation
Indices: 98690758--98690794 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
98690748 GTATATTTGG
98690758 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98690795 GGTCTAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98695000 original size:13 final size:13
Alignment explanation
Indices: 98694950--98695004 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
98694940 AAGTCCTCAA
*
98694950 AAAATAAATAAAAG
1 AAAATAAA-AAAAT
*
98694964 AAAAGTAAAAACA-
1 AAAA-TAAAAAAAT
98694977 AAAAT-AAAAAAT
1 AAAATAAAAAAAT
98694989 AAAATAAAAAAAT
1 AAAATAAAAAAAT
98695002 AAA
1 AAA
98695005 TGGACTCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
11 5 0.14
12 6 0.17
13 14 0.39
14 7 0.19
15 4 0.11
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.13
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:98695005 original size:12 final size:12
Alignment explanation
Indices: 98694948--98695005 Score: 59
Period size: 12 Copynumber: 4.9 Consensus size: 12
98694938 AGAAGTCCTC
98694948 AAAAAATAAATA
1 AAAAAATAAATA
* *
98694960 AAAGAA-AAGTA
1 AAAAAATAAATA
98694971 AAAACAA-AAAT-
1 AAAA-AATAAATA
98694982 AAAAAATAAAATA
1 AAAAAAT-AAATA
98694995 AAAAAATAAAT
1 AAAAAATAAAT
98695006 GGACTCAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 2 0.05
11 11 0.29
12 18 0.47
13 7 0.18
ACGTcount: A:0.81, C:0.02, G:0.03, T:0.14
Consensus pattern (12 bp):
AAAAAATAAATA
Found at i:98706469 original size:39 final size:40
Alignment explanation
Indices: 98706422--98706565 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
98706412 AATGTTCGAG
98706422 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
98706461 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
98706500 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
98706540 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
98706566 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:98714450 original size:39 final size:39
Alignment explanation
Indices: 98714403--98714585 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
98714393 AATGTTCGAG
98714403 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
98714442 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
98714481 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
98714520 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
98714560 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
98714586 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:98725602 original size:34 final size:33
Alignment explanation
Indices: 98725542--98725621 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
98725532 TACTGTAATA
98725542 GGCTTAGGCCCCACTGATACTGTTACTAAAACT-
1 GGCTTAGGCCCCACTGATACTGTTACTAAAA-TG
* * *
98725575 GGCTTAGGCCCAGACTGCTACTGTTACTGAAATG
1 GGCTTAGGCCC-CACTGATACTGTTACTAAAATG
*
98725609 GGCTAAGGCCCCA
1 GGCTTAGGCCCCA
98725622 ACCGAAACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 13 0.32
34 27 0.68
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (33 bp):
GGCTTAGGCCCCACTGATACTGTTACTAAAATG
Found at i:98728418 original size:40 final size:40
Alignment explanation
Indices: 98728268--98728435 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
98728258 CGGAATACAA
* * *
98728268 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
98728308 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
98728348 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
98728388 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
98728428 CCGGATAT
1 CCGGATAT
98728436 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98736463 original size:40 final size:40
Alignment explanation
Indices: 98736313--98736480 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
98736303 CGGAATACAA
* * *
98736313 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
98736353 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
98736393 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
98736433 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
98736473 CCGGATAT
1 CCGGATAT
98736481 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98743893 original size:39 final size:39
Alignment explanation
Indices: 98743789--98743971 Score: 267
Period size: 39 Copynumber: 4.6 Consensus size: 39
98743779 TCGTTCAAAC
* * * * *
98743789 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
98743829 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
98743869 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
98743908 GCCTTCGGGCTTAGCCCGGATATCACATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
98743947 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
98743972 CAATTCACAC
Statistics
Matches: 133, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 89 0.67
40 44 0.33
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:98751897 original size:39 final size:39
Alignment explanation
Indices: 98751815--98752007 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
98751805 TCGTTCAAAC
* * * * * *
98751815 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
* *
98751855 GCCTTCGGGACTTA-CCCGAATATCACAACTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
* * *
98751894 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
98751933 GCCTTCGGGCTTAGCCCGGATATCACATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
98751972 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
98752008 TTCATACACA
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 4 0.03
39 117 0.87
40 13 0.10
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:98755638 original size:56 final size:56
Alignment explanation
Indices: 98755552--98755684 Score: 196
Period size: 56 Copynumber: 2.4 Consensus size: 56
98755542 ATGGCATCGA
* *
98755552 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATTGATATGTGATT-TCGT
1 TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCT-GT
* * *
98755608 TATATGTGTACGAGTAAGACCACGTTTAATAAGTTGGCATCGGTATGTGATTCTGT
1 TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCTGT
*
98755664 TATATGTGTGCGAGTACGACC
1 TATATGTGTGCGAGTAAGACC
98755685 TTGTCTGGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
56 68 0.99
57 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCTGT
Found at i:98755711 original size:56 final size:56
Alignment explanation
Indices: 98755552--98755715 Score: 170
Period size: 56 Copynumber: 2.9 Consensus size: 56
98755542 ATGGCATCGA
* * * * *
98755552 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATTGATATGTGATTTCGT
1 TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTTCGT
* *
98755608 TATATGTGTACGAGTAAGACCACGTTTAATAAGTTGGCATCGGTATGTGA-TTCTGT
1 TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTTC-GT
* * ** ** *
98755664 TATATGTGTGCGAGTACGACCTTGTCTGGTACAG-TGGTATCGATATGTGATT
1 TATATGTGTACGAGTAAGACCACGTCTAATA-AGTTGGCATCGATATGTGATT
98755716 ACATGTAATA
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
55 3 0.03
56 85 0.93
57 3 0.03
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.37
Consensus pattern (56 bp):
TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTTCGT
Found at i:98759528 original size:48 final size:48
Alignment explanation
Indices: 98759454--98759632 Score: 181
Period size: 48 Copynumber: 3.8 Consensus size: 48
98759444 TAGGATTATG
* * *
98759454 TGTGATCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATA
* *
98759502 TGTGATCCCATGTAAGACAATATCTGGGATATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATA
* * * * * * *
98759550 TGAGA-CATCGTGTAAGACCATAGCTGGG-C-T---ATTGGCTTCGATT
1 TGTGATC-CCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATA
* *
98759593 TGTGATCCTATGTAAGACCATATCTGGGATATGGCATTGG
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGG
98759633 AATCTTACTA
Statistics
Matches: 104, Mismatches: 20, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 31 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 69 0.66
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCAATA
Found at i:98761920 original size:18 final size:17
Alignment explanation
Indices: 98761885--98761939 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
98761875 TGAATTAAGG
98761885 TAAA-TAAATCCAAAAT
1 TAAATTAAATCCAAAAT
*
98761901 TAAATTAAATACCCAAAT
1 TAAATTAAAT-CCAAAAT
* *
98761919 TAAATT-ACTCAAAAAT
1 TAAATTAAATCCAAAAT
98761935 TAAAT
1 TAAAT
98761940 ATTAAAAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 14 0.42
17 7 0.21
18 12 0.36
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAATTAAATCCAAAAT
Found at i:98765036 original size:43 final size:43
Alignment explanation
Indices: 98764988--98765092 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
98764978 TTCAACAAAC
* **
98764988 TCGCACACTTAGTGCCGATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
* *
98765031 TCGCACACTTAGTGTCAATTAATTAGCCCAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
*
98765074 TCACACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
98765093 ACATTAAACT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
Found at i:98769228 original size:46 final size:46
Alignment explanation
Indices: 98769173--98769353 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
98769163 CTAGGATGTT
98769173 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
98769219 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
98769265 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
98769312 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98769354 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:98769334 original size:93 final size:93
Alignment explanation
Indices: 98769175--98769345 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
98769165 AGGATGTTGA
* *
98769175 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98769240 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
98769268 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98769333 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
98769346 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98772342 original size:15 final size:15
Alignment explanation
Indices: 98772303--98772381 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
98772293 GTATCTTGGG
*
98772303 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
98772318 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
98772333 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
98772347 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
98772362 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
98772376 TTTCTT
1 TTTCTT
98772382 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:98772366 original size:29 final size:29
Alignment explanation
Indices: 98772294--98772380 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
98772284 CATAGTATCG
* * * *
98772294 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
98772324 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
98772353 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
98772381 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:98774814 original size:46 final size:46
Alignment explanation
Indices: 98774761--98774936 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98774751 TATTTGGGCA
98774761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98774807 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98774854 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98774900 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98774937 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98774916 original size:93 final size:93
Alignment explanation
Indices: 98774757--98774928 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98774747 GGGATATTTG
* *
98774757 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98774822 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98774850 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98774915 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98774929 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98782056 original size:37 final size:37
Alignment explanation
Indices: 98782003--98782140 Score: 222
Period size: 37 Copynumber: 3.7 Consensus size: 37
98781993 CGAATAGTCC
* *
98782003 CCACACGTAGTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
98782040 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
* * *
98782077 CCACACATAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
*
98782114 CCACATGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
98782141 GAATATATTT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
Found at i:98782341 original size:48 final size:48
Alignment explanation
Indices: 98782283--98782820 Score: 824
Period size: 48 Copynumber: 11.0 Consensus size: 48
98782273 ATATACACAC
* * *
98782283 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
*
98782331 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
98782379 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA-A-ATATATAT
*
98782429 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
98782477 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA-A-ATATATAT
* * *
98782527 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
* * *
98782575 ATCTCATATATATTTCACATTAGTCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
* * *
98782623 ATCTCATATATATTTCAGATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
*
98782671 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA-A-ATATATAT
* * *
98782721 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
* *
98782769 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA-A-ATATATAT
98782819 AT
1 AT
98782821 TTATCTTGTA
Statistics
Matches: 458, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
48 309 0.67
49 1 0.00
50 148 0.32
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATATAT
Found at i:98782439 original size:146 final size:145
Alignment explanation
Indices: 98782283--98782820 Score: 862
Period size: 146 Copynumber: 3.7 Consensus size: 145
98782273 ATATACACAC
* * *
98782283 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACACATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
98782348 CATTAGCCATTCGGCTTTACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCAAATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
98782413 TACCATATATATATAT
131 TACCA-ATATATATAT
*
98782429 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
98782494 CATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTTCATATTAGCCATTCGGC
66 CATTAGCCATTCGGCTTTACCA-A-ATATATATATCTCATACATATTTCATATTAGCCATTCGGC
* *
98782559 TTTACC-ACATATACAT
129 TTTACCAATATATATAT
* * * *
98782575 ATCTCATATATATTTCACATTAGTCATTCGGCTTTACCACATATATATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
98782640 GATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCAAATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
98782705 TACCACATATATATAT
131 TACCA-ATATATATAT
*
98782721 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
98782786 CACTAGCCATTCGGCCTTACCACACATATATATAT
66 CATTAGCCATTCGGCTTTACCA-A-ATATATATAT
98782821 TTATCTTGTA
Statistics
Matches: 362, Mismatches: 24, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
144 46 0.13
146 261 0.72
147 1 0.00
148 54 0.15
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (145 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCAAATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
TACCAATATATATAT
Found at i:98782453 original size:98 final size:98
Alignment explanation
Indices: 98782283--98782820 Score: 895
Period size: 98 Copynumber: 5.5 Consensus size: 98
98782273 ATATACACAC
* * *
98782283 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCA-A-ATATACACATCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
*
98782346 CACATTAGCCATTCGGCTTTACCAAATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
*
98782379 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATATATATATCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
*
98782444 CACATTAGCCATTCGGCTTTACCACATATATAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
98782477 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
*
98782542 CATATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
98782575 ATCTCATATATATTTCACATTAGTCATTCGGCTTTACCAC--ATATATATATCTCATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
* *
98782638 CAGATTAGCCATTCGGCTTTACCACATATATAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
*
98782671 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
*
98782736 CATATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
98782769 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATAT
98782821 TTATCTTGTA
Statistics
Matches: 415, Mismatches: 23, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
96 128 0.31
97 1 0.00
98 286 0.69
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (98 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
CACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:98791068 original size:26 final size:27
Alignment explanation
Indices: 98791046--98791104 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
98791036 TAATCATATT
*
98791046 TCATA-GCCCAACATACATGTCATCCA
1 TCATACGCCCAACATACATGTCATACA
* *
98791072 TCATACTCCCAACATACATGTCATCCA
1 TCATACGCCCAACATACATGTCATACA
98791099 TCATAC
1 TCATAC
98791105 TCATTAACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.34, C:0.36, G:0.05, T:0.25
Consensus pattern (27 bp):
TCATACGCCCAACATACATGTCATACA
Found at i:98791087 original size:27 final size:27
Alignment explanation
Indices: 98791052--98791106 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
98791042 TATTTCATAG
98791052 CCCAACATACATGTCATCCATCATACT
1 CCCAACATACATGTCATCCATCATACT
98791079 CCCAACATACATGTCATCCATCATACT
1 CCCAACATACATGTCATCCATCATACT
98791106 C
1 C
98791107 ATTAACCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.38, G:0.04, T:0.25
Consensus pattern (27 bp):
CCCAACATACATGTCATCCATCATACT
Found at i:98792619 original size:44 final size:43
Alignment explanation
Indices: 98792569--98792726 Score: 180
Period size: 44 Copynumber: 3.7 Consensus size: 43
98792559 ATGTGTTCTT
*
98792569 GTGTAAGACCACGTCTGGGACATTGGCATCGAATTATGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGAATT-TGATTTAC
*
98792613 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTAC
* *
98792655 GTGTAAGACTC-TATCTAGGAC-TGTGGCATCGATATTTG-TTTAC
1 GTGTAAGAC-CATGTCTGGGACAT-TGGCATCGA-ATTTGATTTAC
* * **
98792698 ATTTAAGACCATGTCTGGGATGTTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
98792727 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 33 0.34
44 34 0.35
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTAC
Found at i:98794843 original size:45 final size:45
Alignment explanation
Indices: 98794779--98794869 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
98794769 CCAAAACATG
*
98794779 TGTCACATATATCACGAACTCATACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
*
98794824 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
98794869 T
1 T
98794870 TACATAATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:98810758 original size:40 final size:40
Alignment explanation
Indices: 98810566--98810751 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
98810556 TCGAATGATG
* * *
98810566 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
98810606 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98810646 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98810686 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
98810727 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98810752 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98810758 original size:80 final size:80
Alignment explanation
Indices: 98810566--98810784 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
98810556 TCGAATGATG
* * **
98810566 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
98810630 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
98810646 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
98810710 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
98810727 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
98810785 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:98818901 original size:40 final size:40
Alignment explanation
Indices: 98818709--98818894 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
98818699 TCGAATGATG
* * *
98818709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
98818749 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98818789 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98818829 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
98818870 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98818895 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98818901 original size:80 final size:80
Alignment explanation
Indices: 98818709--98818927 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
98818699 TCGAATGATG
* * **
98818709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
98818773 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
98818789 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
98818853 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
98818870 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
98818928 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:98820617 original size:57 final size:58
Alignment explanation
Indices: 98820546--98820668 Score: 212
Period size: 57 Copynumber: 2.1 Consensus size: 58
98820536 AAATCTCAAC
* *
98820546 ACTTTTTTCTATGGAGATACTTTCAAGAATACTTTATCTCCAACTTGGAACTAAA-TT
1 ACTTTCTTCCATGGAGATACTTTCAAGAATACTTTATCTCCAACTTGGAACTAAATTT
98820603 ACTTTCTTCCATGGAGATACTTTCAAGAATACTTTATCTCCAACTTGGAACTAAATTT
1 ACTTTCTTCCATGGAGATACTTTCAAGAATACTTTATCTCCAACTTGGAACTAAATTT
*
98820661 CCTTTCTT
1 ACTTTCTT
98820669 TTCAGGTCAG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
57 53 0.85
58 9 0.15
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (58 bp):
ACTTTCTTCCATGGAGATACTTTCAAGAATACTTTATCTCCAACTTGGAACTAAATTT
Found at i:98826089 original size:78 final size:81
Alignment explanation
Indices: 98825976--98826157 Score: 230
Period size: 78 Copynumber: 2.3 Consensus size: 81
98825966 TACTCGTTCA
* * *
98825976 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTAGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
98826039 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
98826055 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTAGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
98826118 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
98826134 AAAGCCTTAGGGACTTAGCCCGGA
1 AATGCCTTAGGGACTTAGCCCGGA
98826158 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.54
79 27 0.30
80 11 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTAGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:98826157 original size:40 final size:40
Alignment explanation
Indices: 98825974--98826157 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
98825964 GCTACTCGTT
* *
98825974 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
98826014 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
98826054 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
98826092 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
98826133 CAAA-GCCTTAGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98826158 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 21 0.17
40 66 0.53
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.