Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 317 of 425
Found at i:98830401 original size:46 final size:46
Alignment explanation
Indices: 98830348--98830520 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
98830338 TTGGGCATCT
98830348 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
* * * * * * *
98830394 GAACTCGTTGAGTTGAGT-TCGAGTTC-GTGAAATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCT-GAGTTCACT--TATGGATGCGA-ACGTCC
*
98830441 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
* * ** *
98830487 GAGCTCATTGAGTTGAGTCCAAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
98830521 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.02
46 62 0.62
47 34 0.34
48 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
Found at i:98830451 original size:93 final size:93
Alignment explanation
Indices: 98830341--98830513 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
98830331 AGGATATTTG
* * *
98830341 GGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
* *
98830406 TTGAGTTCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
*
98830434 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
98830499 TTGAGTCCAAGTTCG
66 TTGAGTCCAAGTTCG
98830514 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:98832024 original size:14 final size:14
Alignment explanation
Indices: 98832005--98832037 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
98831995 CATGATTGTG
98832005 TGAAAATTTCGTGA
1 TGAAAATTTCGTGA
98832019 TGAAAATTTCGTGA
1 TGAAAATTTCGTGA
98832033 TGAAA
1 TGAAA
98832038 TTCTATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.33
Consensus pattern (14 bp):
TGAAAATTTCGTGA
Found at i:98833173 original size:46 final size:48
Alignment explanation
Indices: 98833106--98833223 Score: 150
Period size: 48 Copynumber: 2.5 Consensus size: 48
98833096 GGACAGGACA
* * *
98833106 AGACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
* *
98833152 AGACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
* **
98833200 AGACAGGAATAATTCATGTAAGTC
1 AGACAGGAATGAGCCATGTAAGTC
98833224 ATGTCGAAGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.46
47 1 0.02
48 32 0.52
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (48 bp):
AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
Found at i:98836094 original size:15 final size:15
Alignment explanation
Indices: 98836074--98836138 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 15
98836064 GTATCTTGGG
98836074 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
98836089 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
98836104 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
* *
98836119 TTTTTTTATTC-GGT
1 TTTCTTTATTCTGGA
98836133 TTTCTT
1 TTTCTT
98836139 GTTATCTTTA
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
14 11 0.28
15 24 0.62
16 4 0.10
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:98836104 original size:30 final size:31
Alignment explanation
Indices: 98836070--98836138 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
98836060 TATCGTATCT
* *
98836070 TGGGTTTCTTTATTC-TGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
*
98836100 TGGGTTTC-TCAATCTTGGATTTTTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
*
98836130 -GGTTTTCTT
1 TGGGTTTCTT
98836139 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 10 0.30
30 23 0.70
ACGTcount: A:0.10, C:0.13, G:0.17, T:0.59
Consensus pattern (31 bp):
TGGGTTTCTTCAATCTTGGATTTCTTTATTC
Found at i:98841684 original size:40 final size:41
Alignment explanation
Indices: 98841590--98841810 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 41
98841580 TATTCGAATG
*
98841590 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
98841631 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
98841671 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
98841711 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
98841751 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
98841790 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
98841811 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 16 0.10
40 95 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:98849743 original size:40 final size:40
Alignment explanation
Indices: 98849649--98849833 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
98849639 TATTCGAATG
* *
98849649 ATATTCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * *
98849690 ATAAT-CGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
*
98849730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
98849770 ATATCCAGGCTAAG-TCCCGAAGGCGTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
98849810 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
98849834 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
39 4 0.03
40 89 0.72
41 27 0.22
42 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:98849813 original size:80 final size:81
Alignment explanation
Indices: 98849649--98849833 Score: 236
Period size: 80 Copynumber: 2.3 Consensus size: 81
98849639 TATTCGAATG
* * *
98849649 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAATCGGACTAAGATCCGAAGGC
*
98849714 ATTCGTGCGAGTTGCT
66 ATTCATGCGAGTTGCT
98849730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCAGG-CTAAG-TCCCGAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAAT-C-GGACTAAGAT-CCGAA
* * *
98849791 GGCGTTTATGCTAG-TGACT
63 GGCATTCATGCGAGTTG-CT
98849810 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
98849834 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
79 5 0.05
80 55 0.59
81 33 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAATCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCT
Found at i:98853508 original size:12 final size:12
Alignment explanation
Indices: 98853491--98853517 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
98853481 CTTACAAGTA
98853491 ATGCATCTACTC
1 ATGCATCTACTC
98853503 ATGCATCTACTC
1 ATGCATCTACTC
98853515 ATG
1 ATG
98853518 TTACGAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (12 bp):
ATGCATCTACTC
Found at i:98855140 original size:49 final size:49
Alignment explanation
Indices: 98855028--98855156 Score: 127
Period size: 49 Copynumber: 2.6 Consensus size: 49
98855018 ATAGGGTATA
* * *
98855028 ATGCCGATGCCATGTCCCAGACACGGTCTTACACTAACTATCAAAATCG
1 ATGCCGATGCCATGTTCCAGACATGGTCTTACACTAACTATCAAAATCC
* * *** * * *
98855077 AGGCTGACAACATGTTCCAGACATGGTCTTAC-CTAGCTCTCACATATCC
1 ATGCCGATGCCATGTTCCAGACATGGTCTTACACTAACTATCA-AAATCC
98855126 ATGCCGATGCCATG-TCCTAGACATGGTCTTA
1 ATGCCGATGCCATGTTCC-AGACATGGTCTTA
98855157 TACTGACACA
Statistics
Matches: 62, Mismatches: 16, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
48 11 0.18
49 51 0.82
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCGATGCCATGTTCCAGACATGGTCTTACACTAACTATCAAAATCC
Found at i:98855232 original size:46 final size:46
Alignment explanation
Indices: 98855177--98855296 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
98855167 TCTCGTAGCT
* * *
98855177 GATGCATGTCCCAGACATATCTTACACTGGCTCTTGTC-TCAA-T-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGG--CATATCAT-AAGTGGTC
*
98855223 GATGCATGTCCTAGACATGTCTTACACTGGCATATCATAATGTGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATATCATAA-GTGGTC
98855270 GATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
98855297 GAGCACACAC
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
44 6 0.09
45 1 0.02
46 29 0.45
47 29 0.45
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATATCATAAGTGGTC
Found at i:98857836 original size:15 final size:15
Alignment explanation
Indices: 98857801--98857855 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
98857791 TCCATAACGG
98857801 AGAAATCCAGAATATA
1 AGAAATCCA-AATATA
98857817 A-AAATCCAACATA-A
1 AGAAATCCAA-ATATA
*
98857831 AGAAATCCAAA-ACA
1 AGAAATCCAAATATA
98857845 AGAAAATCCAA
1 AG-AAATCCAA
98857856 TCACGATACC
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.03
14 7 0.20
15 26 0.74
16 1 0.03
ACGTcount: A:0.62, C:0.18, G:0.07, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAATATA
Found at i:98860702 original size:40 final size:40
Alignment explanation
Indices: 98860632--98860887 Score: 365
Period size: 40 Copynumber: 6.4 Consensus size: 40
98860622 AAGCCAAGTA
* * * * *
98860632 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
98860671 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98860711 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98860751 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
98860791 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
98860831 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
98860871 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
98860888 AGTTATCATC
Statistics
Matches: 200, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.06
40 187 0.94
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98860945 original size:18 final size:19
Alignment explanation
Indices: 98860903--98860945 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
98860893 TCATCCAAAT
98860903 ATTCATGCACACATCAATA
1 ATTCATGCACACATCAATA
* *
98860922 AATCATG-ACACATCTATA
1 ATTCATGCACACATCAATA
*
98860940 TTTCAT
1 ATTCAT
98860946 TTTCATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (19 bp):
ATTCATGCACACATCAATA
Found at i:98865109 original size:47 final size:49
Alignment explanation
Indices: 98865034--98865167 Score: 159
Period size: 47 Copynumber: 2.8 Consensus size: 49
98865024 AAGGTATAAT
* *
98865034 GCTGATGCCATGTCCCAAACATGCTCTTACACTAGCTCATC-CATCAAG
1 GCTGATGCCATGTCCCAGACATGCTCTTACACTAGCTCATCAAATCAAG
* * *
98865082 TC-GATGCCATGTCCCAGACATGGTCTTACA-TTGACT-ATCGAAATCAAG
1 GCTGATGCCATGTCCCAGACATGCTCTTACACTAG-CTCATC-AAATCAAG
* *
98865130 GCTGACGCCATGTCCCAGACATGTTCTTACACTAGCTC
1 GCTGATGCCATGTCCCAGACATGCTCTTACACTAGCTC
98865168 TCACATATCT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
46 5 0.07
47 28 0.39
48 8 0.11
49 28 0.39
50 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (49 bp):
GCTGATGCCATGTCCCAGACATGCTCTTACACTAGCTCATCAAATCAAG
Found at i:98865333 original size:47 final size:46
Alignment explanation
Indices: 98865226--98865349 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 46
98865216 ATATCTCGTA
*
98865226 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTTATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATTATCTCAAT
* *
98865272 GCCGATGCATGTCCCGGATATGTCTTACACTGGC-ATT-TCAT-AATGT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATTATC-TCAA--T
98865318 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
98865350 AGCACACACA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 4 0.06
45 3 0.04
46 33 0.48
47 29 0.42
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATTATCTCAAT
Found at i:98870204 original size:15 final size:15
Alignment explanation
Indices: 98870184--98870219 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
98870174 TCTTATTTAA
98870184 TTTTTAAGACTCATT
1 TTTTTAAGACTCATT
*
98870199 TTTTTAAGATTCATT
1 TTTTTAAGACTCATT
98870214 TGTTTT
1 T-TTTT
98870220 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTTTAAGACTCATT
Found at i:98872904 original size:40 final size:40
Alignment explanation
Indices: 98872830--98873013 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
98872820 GCTACTCGTT
*
98872830 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
98872869 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
98872909 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
98872948 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
98872989 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98873014 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 44 0.35
40 67 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:98872929 original size:79 final size:79
Alignment explanation
Indices: 98872832--98873013 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 79
98872822 TACTCGTTCA
* * *
98872832 AATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
98872895 TTTAGTAAC-TCGCACC
64 TATAGTAACTTAGCA-C
**
98872911 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* *
98872976 TGGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
98872990 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
98873014 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 70 0.79
80 16 0.18
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:98881020 original size:79 final size:81
Alignment explanation
Indices: 98880911--98881093 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
98880901 TACTCGTTCA
* *
98880911 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
98880974 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
98880991 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
98881054 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
98881070 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
98881094 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:98881093 original size:40 final size:40
Alignment explanation
Indices: 98880890--98881093 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
98880880 CGGAATTTAA
** *
98880890 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98880930 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98880970 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
98881009 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
98881049 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
98881089 CCGGA
1 CCGGA
98881094 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:98884080 original size:32 final size:33
Alignment explanation
Indices: 98884034--98884101 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
98884024 TAGTGATAAT
*
98884034 AACATAACTTAGGGATCTCTGCGGAACAAGTTG
1 AACATAACTTAGGGATCTCTACGGAACAAGTTG
98884067 AACA-AACTTAGGGATCTCTACGGAACAAGTTG
1 AACATAACTTAGGGATCTCTACGGAACAAGTTG
98884099 AAC
1 AAC
98884102 GAATAAATCG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (33 bp):
AACATAACTTAGGGATCTCTACGGAACAAGTTG
Found at i:98888535 original size:37 final size:37
Alignment explanation
Indices: 98888476--98888581 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
98888466 AGCTCAGATG
* *
98888476 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98888513 AAATCTCCACACGTGGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98888550 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
98888582 AGAATATATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98888783 original size:48 final size:48
Alignment explanation
Indices: 98888725--98889111 Score: 632
Period size: 48 Copynumber: 8.0 Consensus size: 48
98888715 ATATACACAC
* * * * *
98888725 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACGTATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98888773 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98888821 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
98888871 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98888919 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
98888967 ATCCCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98889015 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
98889063 ATC-CATACATATTTCACATTAGCCATTTGGCCTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
98889110 AT
1 AT
98889112 ATTTATCTTG
Statistics
Matches: 325, Mismatches: 12, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
47 44 0.14
48 235 0.72
50 46 0.14
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:98891929 original size:26 final size:27
Alignment explanation
Indices: 98891899--98891962 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
98891889 GGATTCGGCT
** *
98891899 ATGGAGGAAAGAAGAGGAG-AAGGTAG
1 ATGGAGGAAAGAAGAAAAGAAAGGAAG
98891925 ATGGAGAGAAA-AAGAAAAGAAAGGAAG
1 ATGGAG-GAAAGAAGAAAAGAAAGGAAG
98891952 A-GGAGGAAAGA
1 ATGGAGGAAAGA
98891963 TGGTCAGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 4 0.12
26 17 0.53
27 11 0.34
ACGTcount: A:0.55, C:0.00, G:0.41, T:0.05
Consensus pattern (27 bp):
ATGGAGGAAAGAAGAAAAGAAAGGAAG
Found at i:98897091 original size:12 final size:12
Alignment explanation
Indices: 98897074--98897102 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
98897064 TAGTACCTCA
98897074 GCCTCGACCACG
1 GCCTCGACCACG
98897086 GCCTCGACCACG
1 GCCTCGACCACG
98897098 GCCTC
1 GCCTC
98897103 TTTCCCGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.52, G:0.24, T:0.10
Consensus pattern (12 bp):
GCCTCGACCACG
Found at i:98912544 original size:27 final size:27
Alignment explanation
Indices: 98912514--98912574 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
98912504 CTATTCAGTA
* *
98912514 ACAGTACAATCTGGGCTTTAGCCCTAT
1 ACAGTACAATCTGGGCTTAAGCCCAAT
* *
98912541 ACAGTAACAGTGTGGGCTTAAGCCCAAT
1 ACAGT-ACAATCTGGGCTTAAGCCCAAT
*
98912569 TCAGTA
1 ACAGTA
98912575 TCAGAACAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (27 bp):
ACAGTACAATCTGGGCTTAAGCCCAAT
Found at i:98912747 original size:23 final size:23
Alignment explanation
Indices: 98912721--98912770 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
98912711 AATAAAGCTA
* * * *
98912721 CTAACAGCAGTGCAGCGAAGTTG
1 CTAACAGAAATGCAGCAAAATTG
*
98912744 CTAATAGAAATGCAGCAAAATTG
1 CTAACAGAAATGCAGCAAAATTG
98912767 CTAA
1 CTAA
98912771 TAACAGTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (23 bp):
CTAACAGAAATGCAGCAAAATTG
Found at i:98915045 original size:13 final size:13
Alignment explanation
Indices: 98915027--98915052 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98915017 TCGAGGCATT
98915027 ACACACACGGCCA
1 ACACACACGGCCA
98915040 ACACACACGGCCA
1 ACACACACGGCCA
98915053 TATGGCTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00
Consensus pattern (13 bp):
ACACACACGGCCA
Found at i:98923347 original size:71 final size:71
Alignment explanation
Indices: 98923260--98923423 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98923250 CGATTTGTCT
98923260 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98923325 CTTTCA
66 CTTTCA
98923331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98923396 CTTTCA
66 CTTTCA
98923402 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98923424 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98923461 original size:71 final size:70
Alignment explanation
Indices: 98923260--98923457 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
98923250 CGATTTGTCT
* * *
98923260 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
98923325 CTTTCA
65 CTTTCA
* * *
98923331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
98923396 CTTTCA
65 CTTTCA
* *
98923402 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
98923458 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98926943 original size:24 final size:24
Alignment explanation
Indices: 98926911--98927011 Score: 139
Period size: 24 Copynumber: 4.0 Consensus size: 24
98926901 CGGCATTGTG
** *
98926911 CTAAGTGAAATAAAACCATGACAT
1 CTAAGTGAAATAAGTCCATGGCAT
98926935 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
98926962 GCTAAGTGAAATAAGTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
98926987 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
98927011 C
1 C
98927012 GTGCTAAATG
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
24 44 0.63
25 2 0.03
27 2 0.03
28 22 0.31
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.24
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:98926975 original size:28 final size:27
Alignment explanation
Indices: 98926902--98927018 Score: 138
Period size: 24 Copynumber: 4.4 Consensus size: 27
98926892 TTTAAGATAC
**
98926902 GGCATTGTGCTAAGTGAAATAAAACCAT
1 GGCA-TGTGCTAAGTGAAATAAGTCCAT
*
98926930 GACA--T-CTAAGTGAAATAAGTCCAT
1 GGCATGTGCTAAGTGAAATAAGTCCAT
98926954 GGCAATGTGCTAAGTGAAATAAGTCCAT
1 GGC-ATGTGCTAAGTGAAATAAGTCCAT
98926982 GGCA--T-CTAAGTGAAATAAGTCCAT
1 GGCATGTGCTAAGTGAAATAAGTCCAT
98927006 GGCATCGTGCTAA
1 GGCAT-GTGCTAA
98927019 ATGAGAAATT
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
24 42 0.55
25 3 0.04
27 3 0.04
28 29 0.38
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (27 bp):
GGCATGTGCTAAGTGAAATAAGTCCAT
Found at i:98926975 original size:52 final size:52
Alignment explanation
Indices: 98926902--98927018 Score: 182
Period size: 52 Copynumber: 2.2 Consensus size: 52
98926892 TTTAAGATAC
*
98926902 GGCATTGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
1 GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
** *
98926954 GGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCAT
1 GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
98927006 GGC-ATCGTGCTAA
1 GGCAAT-GTGCTAA
98927019 ATGAGAAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 2 0.03
52 58 0.97
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (52 bp):
GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
Found at i:98927122 original size:51 final size:51
Alignment explanation
Indices: 98927046--98927295 Score: 358
Period size: 51 Copynumber: 4.9 Consensus size: 51
98927036 TGAACCTTAG
** * * *
98927046 GAATAAAATAAATTTAGACACAAGTGTAGTACTATGTGAAGGCCATTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
**
98927097 GAATATTATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
98927148 GAATATAATAGTTTTGGACACAAGTGTGGTACTATGTGAAAGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
98927199 GCATAAAATAGCTTTGAACACAAGTGTGGTACTATGTTAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
98927250 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
98927296 CGTGTATCCG
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 177 0.99
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:98932896 original size:40 final size:40
Alignment explanation
Indices: 98932851--98933017 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
98932841 CGGAATATAA
98932851 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
98932891 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
98932931 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98932971 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
98933010 CCGGATAT
1 CCGGATAT
98933018 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98933001 original size:80 final size:79
Alignment explanation
Indices: 98932851--98933017 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
98932841 CGGAATATAA
* *
98932851 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
98932916 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
98932931 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
98932993 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
98933010 CCGGATAT
1 CCGGATAT
98933018 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:98936272 original size:10 final size:11
Alignment explanation
Indices: 98936257--98936285 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
98936247 AGGTGTGCAT
98936257 GGGCCGGG-TC
1 GGGCCGGGTTC
98936267 GGGCCGGGTTC
1 GGGCCGGGTTC
98936278 GGGCCGGG
1 GGGCCGGG
98936286 CTCACCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.00, C:0.28, G:0.62, T:0.10
Consensus pattern (11 bp):
GGGCCGGGTTC
Found at i:98936588 original size:6 final size:6
Alignment explanation
Indices: 98936577--98936601 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
98936567 AATTGATTAT
98936577 ATTAAA ATTAAA ATTAAA ATTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA A
98936602 AATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATTAAA
Found at i:98939708 original size:27 final size:28
Alignment explanation
Indices: 98939660--98939714 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
98939650 ATATATAGTT
98939660 TTTAAAATTTATAAAAAAAT-AAATAAA
1 TTTAAAATTTATAAAAAAATAAAATAAA
** *
98939687 TTTAAAATTTATATTAATATAAAATAAA
1 TTTAAAATTTATAAAAAAATAAAATAAA
98939715 GTAAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTAAAATTTATAAAAAAATAAAATAAA
Found at i:98939719 original size:27 final size:27
Alignment explanation
Indices: 98939662--98939721 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
98939652 ATATAGTTTT
*
98939662 TAAAATTTATAAAAAAATAAATAAATT
1 TAAAATTTATAAAAAAATAAATAAATG
** *
98939689 TAAAATTTATATTAATATAAAATAAA-G
1 TAAAATTTATAAAAAAAT-AAATAAATG
98939716 TAAAAT
1 TAAAAT
98939722 AAAACCTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
TAAAATTTATAAAAAAATAAATAAATG
Found at i:98940082 original size:20 final size:20
Alignment explanation
Indices: 98940057--98940098 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
98940047 TCAACGGTAA
98940057 TATTTACTTTTGTCTGATGT
1 TATTTACTTTTGTCTGATGT
98940077 TATTTACTTTTGTCTGATGT
1 TATTTACTTTTGTCTGATGT
98940097 TA
1 TA
98940099 CGGCAGTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.10, G:0.14, T:0.60
Consensus pattern (20 bp):
TATTTACTTTTGTCTGATGT
Found at i:98941558 original size:2 final size:2
Alignment explanation
Indices: 98941541--98941588 Score: 78
Period size: 2 Copynumber: 23.5 Consensus size: 2
98941531 TTTTGAATTG
*
98941541 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98941584 TA TA T
1 TA TA T
98941589 GACATTGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:98943523 original size:45 final size:45
Alignment explanation
Indices: 98943471--98943557 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
98943461 TATGTAATCT
*
98943471 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCC
*
98943516 GAACTCATTGAGTTGTGGTCTAAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
98943558 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCC
Found at i:98945978 original size:40 final size:40
Alignment explanation
Indices: 98945933--98946100 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
98945923 CGGAATATAA
98945933 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
98945973 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
98946013 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98946053 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
98946093 CCGGATAT
1 CCGGATAT
98946101 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98946083 original size:80 final size:80
Alignment explanation
Indices: 98945949--98946098 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
98945939 ATAATCACGT
*
98945949 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
98946013 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
98946029 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
98946092 CCCGGAT
64 CCCGGAT
98946099 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:98953990 original size:40 final size:40
Alignment explanation
Indices: 98953945--98954112 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
98953935 CGGAATATAA
98953945 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
98953985 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
98954025 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98954065 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
98954105 CCGGATAT
1 CCGGATAT
98954113 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98954095 original size:80 final size:80
Alignment explanation
Indices: 98953961--98954110 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
98953951 ATAATCACGT
*
98953961 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
98954025 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
98954041 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
98954104 CCCGGAT
64 CCCGGAT
98954111 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:98962680 original size:46 final size:45
Alignment explanation
Indices: 98962593--98962809 Score: 197
Period size: 46 Copynumber: 4.6 Consensus size: 45
98962583 GGTAAGGTGT
*
98962593 CGATGCCATGTCCCAGACATAGTCTTACACTGAC-TATCATCTCATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCA-AGC
* * *
98962641 CGACGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AAGC
* * * * *
98962687 CGATGCATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCAA-GC
* * **
98962733 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-GTGCC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCAAG-C
98962781 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
98962810 AGCTCACACA
Statistics
Matches: 140, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 69 0.49
47 46 0.33
48 23 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGC
Found at i:98962829 original size:46 final size:45
Alignment explanation
Indices: 98962640--98962830 Score: 152
Period size: 46 Copynumber: 4.1 Consensus size: 45
98962630 CATCTCATAG
* * * * ** * *
98962640 CCGACGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA-CAAGTGC
* * *
98962686 CCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAA-TG-
1 CCGATGCATGTCCCAGACATGTCTTACACTAG--CTC-ACACAAGTGC
* * ** *
98962732 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATGTGC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACAA-GTGC
98962780 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTG-C
98962826 CCGAT
1 CCGAT
98962831 CGTCATGGCA
Statistics
Matches: 115, Mismatches: 21, Indels: 18
0.75 0.14 0.12
Matches are distributed among these distances:
45 7 0.06
46 58 0.50
47 30 0.26
48 19 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTGC
Found at i:98964177 original size:43 final size:43
Alignment explanation
Indices: 98964129--98964211 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
98964119 ACATGTATCA
* * *
98964129 CATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGCTCG
1 CATCCATAATGAACTCGGACCACTCAACAAGCTCGAATGCTCG
98964172 CATCCATAATGAACTCGGACCACTCAACAAGCTCGAATGC
1 CATCCATAATGAACTCGGACCACTCAACAAGCTCGAATGC
98964212 CACATATATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.19
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCACTCAACAAGCTCGAATGCTCG
Found at i:98964569 original size:43 final size:43
Alignment explanation
Indices: 98964508--98964591 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
98964498 CTTACCTCGA
* *
98964508 TACAAAAATTATGGTAATCAAACCTAATCGTCGTATACTTTGG
1 TACAAAAATGATGGTAATCAAACCTAATCGCCGTATACTTTGG
98964551 TACAAAAATGATGGTAATCAAACCTAATCGCCGTATACTTT
1 TACAAAAATGATGGTAATCAAACCTAATCGCCGTATACTTT
98964592 ATTCTTCCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (43 bp):
TACAAAAATGATGGTAATCAAACCTAATCGCCGTATACTTTGG
Found at i:98973453 original size:43 final size:43
Alignment explanation
Indices: 98973405--98973486 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
98973395 CGTGTATCGC
* *
98973405 ATCCATTATGAACTCAGACCACTCAACGAGCTTGGATGCTCGT
1 ATCCATAATGAACTCAGACCACTCAAAGAGCTTGGATGCTCGT
*
98973448 ATCCATAATGAACTCGGACCACTCAAAGAGCTTGGATGC
1 ATCCATAATGAACTCAGACCACTCAAAGAGCTTGGATGC
98973487 CACAAATAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCACTCAAAGAGCTTGGATGCTCGT
Found at i:98980851 original size:21 final size:21
Alignment explanation
Indices: 98980826--98980896 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
98980816 AATTATGTAA
98980826 TCTGAACTCATTGAGTTATGG
1 TCTGAACTCATTGAGTTATGG
**
98980847 TCTGAGTTCA-TGA-TATATGTG
1 TCTGAACTCATTGAGT-TATG-G
*
98980868 ACATCCGAACTCATTGAGTTATGG
1 ---TCTGAACTCATTGAGTTATGG
98980892 TCTGA
1 TCTGA
98980897 GTTCGTGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
19 1 0.03
20 7 0.19
21 13 0.35
24 8 0.22
25 7 0.19
26 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (21 bp):
TCTGAACTCATTGAGTTATGG
Found at i:98980881 original size:45 final size:45
Alignment explanation
Indices: 98980829--98980915 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
98980819 TATGTAATCT
98980829 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
*
98980874 GAACTCATTGAGTTATGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACA
98980916 CTTGTTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
Found at i:98984990 original size:21 final size:21
Alignment explanation
Indices: 98984966--98985006 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98984956 TCATGCATAT
*
98984966 ACATTCAACCTATTTAAGCAC
1 ACATTCAACCTACTTAAGCAC
* *
98984987 ACATTCGACGTACTTAAGCA
1 ACATTCAACCTACTTAAGCA
98985007 TCATTGAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (21 bp):
ACATTCAACCTACTTAAGCAC
Found at i:98985554 original size:40 final size:40
Alignment explanation
Indices: 98985510--98985733 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
98985500 ACTAGAGTTT
* * * *
98985510 AAACAAGGCCGTGAAAGTGAATTCAGGGGTACTGAAGTAG
1 AAACAAGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
* * *
98985550 AAACAGGGGCATGTATGTGCATTCAGGGGTACTAAAGTAG
1 AAACAAGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
* *
98985590 AAACAGAGG-CACGTATGTGCATTCAGGGGTACTGAAGTAT
1 AAACA-AGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
* * * *
98985630 AAACAAGGGCATGTATGTGCATTCAGGGGTAC-CAAATAC
1 AAACAAGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
* * * *
98985669 AAACAGAGG-CACGTATGTGCATTCAAGGGTACTAAAGTAC
1 AAACA-AGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
98985709 AAACAGAGG-CATGTATGTGCATTCA
1 AAACA-AGGCCATGTATGTGCATTCA
98985734 TACAATAATT
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 33 0.21
40 125 0.78
41 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (40 bp):
AAACAAGGCCATGTATGTGCATTCAGGGGTACTGAAGTAG
Found at i:98985713 original size:79 final size:80
Alignment explanation
Indices: 98985530--98985733 Score: 322
Period size: 79 Copynumber: 2.6 Consensus size: 80
98985520 GTGAAAGTGA
* * * *
98985530 ATTCAGGGGTACTGAAGTAGAAACAGGGGCATGTATGTGCATTCAGGGGTACTAAAGTAGAAACA
1 ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAGGGGTACCAAAGTACAAACA
98985595 GAGGCACGTATGTGC
66 GAGGCACGTATGTGC
*
98985610 ATTCAGGGGTACTGAAGTATAAACAAGGGCATGTATGTGCATTCAGGGGTACCAAA-TACAAACA
1 ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAGGGGTACCAAAGTACAAACA
98985674 GAGGCACGTATGTGC
66 GAGGCACGTATGTGC
* *
98985689 ATTCAAGGGTACTAAAGTACAAAC-AGAGGCATGTATGTGCATTCA
1 ATTCAGGGGTACTGAAGTACAAACAAG-GGCATGTATGTGCATTCA
98985734 TACAATAATT
Statistics
Matches: 116, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
78 2 0.02
79 61 0.53
80 53 0.46
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.22
Consensus pattern (80 bp):
ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAGGGGTACCAAAGTACAAACA
GAGGCACGTATGTGC
Found at i:98993086 original size:14 final size:15
Alignment explanation
Indices: 98993062--98993094 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
98993052 GTTATGGTTA
98993062 TATGAAAAGGCACAC
1 TATGAAAAGGCACAC
98993077 TATG-AAAGGCACAC
1 TATGAAAAGGCACAC
98993091 TATG
1 TATG
98993095 TGTGAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.18
Consensus pattern (15 bp):
TATGAAAAGGCACAC
Found at i:98994797 original size:25 final size:25
Alignment explanation
Indices: 98994769--98994850 Score: 128
Period size: 25 Copynumber: 3.3 Consensus size: 25
98994759 TTACTGATTC
*
98994769 CAGCTCGTATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCGTTATT
98994794 CAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCGTTATT
* * *
98994819 CAGCTCGGATGAGCTTACCTTTATT
1 CAGCTCGCATGAGCTTCCCGTTATT
98994844 CAGCTCG
1 CAGCTCG
98994851 GAGGAGATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCCGTTATT
Found at i:98994851 original size:25 final size:25
Alignment explanation
Indices: 98994769--98994862 Score: 125
Period size: 25 Copynumber: 3.8 Consensus size: 25
98994759 TTACTGATTC
* *
98994769 CAGCTCGTATGAGCTTCCCGTTATT
1 CAGCTCGGATGAGCTTACCGTTATT
* *
98994794 CAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGGATGAGCTTACCGTTATT
*
98994819 CAGCTCGGATGAGCTTACCTTTATT
1 CAGCTCGGATGAGCTTACCGTTATT
* *
98994844 CAGCTCGGAGGAGATTACC
1 CAGCTCGGATGAGCTTACC
98994863 ATTTACAACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (25 bp):
CAGCTCGGATGAGCTTACCGTTATT
Found at i:99008716 original size:92 final size:93
Alignment explanation
Indices: 99008605--99008774 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
99008595 GCCCCTAAGT
* *
99008605 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99008670 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
99008698 GAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99008762 CGAGTTCGGATGC
66 CGAGTTCGGATGC
99008775 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 67 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:99008771 original size:46 final size:46
Alignment explanation
Indices: 99008600--99008771 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
99008590 AACCCGCCCC
* * * *
99008600 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
99008646 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
99008694 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
99008738 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
99008772 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 6 0.06
46 76 0.73
47 6 0.06
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:99009224 original size:30 final size:30
Alignment explanation
Indices: 99009190--99009249 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
99009180 ATTTAATACG
99009190 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
99009220 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
99009250 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:99016225 original size:46 final size:46
Alignment explanation
Indices: 99016158--99016330 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
99016148 AACCCGCCCC
* * *
99016158 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCA
* * * *
99016204 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTAGCATCCA
* * * * *
99016250 TTTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCA
99016297 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
99016331 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.02
46 66 0.64
47 33 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCA
Found at i:99016271 original size:93 final size:93
Alignment explanation
Indices: 99016163--99016333 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
99016153 GCCCCTAAGT
*
99016163 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99016228 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
99016256 GAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99016321 CGAGTTCGGATGC
66 CGAGTTCGGATGC
99016334 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:99016788 original size:30 final size:30
Alignment explanation
Indices: 99016754--99016813 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
99016744 ATTTAATATG
99016754 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
99016784 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
99016814 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:99029801 original size:17 final size:16
Alignment explanation
Indices: 99029760--99029791 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
99029750 TAAAAATCAC
99029760 TTAAAA-AA-TTAATT
1 TTAAAATAATTTAATT
99029774 TTAAAATAATTTAATT
1 TTAAAATAATTTAATT
99029790 TT
1 TT
99029792 TCAATAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 2 0.12
16 8 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAATAATTTAATT
Found at i:99031542 original size:19 final size:19
Alignment explanation
Indices: 99031511--99031548 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
99031501 TACATACAAT
*
99031511 TGTACAAAATTAAATTTTA
1 TGTACAAAATTAAAATTTA
99031530 TGTA-AAAATTTAAAATTTA
1 TGTACAAAA-TTAAAATTTA
99031549 CCATATTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
TGTACAAAATTAAAATTTA
Found at i:99033500 original size:68 final size:68
Alignment explanation
Indices: 99033391--99033527 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
99033381 TGCACCATTG
99033391 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAAACAAAA
1 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAAACAAAA
99033456 ACA
66 ACA
99033459 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAAACAAAA
1 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAAACAAAA
99033524 ACA
66 ACA
99033527 A
1 A
99033528 AGAACCACCA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (68 bp):
AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAAACAAAA
ACA
Found at i:99037881 original size:3 final size:3
Alignment explanation
Indices: 99037867--99038134 Score: 85
Period size: 3 Copynumber: 91.0 Consensus size: 3
99037857 AAAGGAAAAT
* * * * *
99037867 ATA ATA ACA ATA ATA A-A A-A AT- ACA ACA ATA ATA ATA GTA A-A AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * **
99037911 TATA ATA A-C ATA ATA AT- ATA ATA GTA ATA GTA ACA AT- ATG ACG
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
99037954 ATA ATA GTA AAA ATA AT- ATA TTAA ATA ATA GTA ATA A-A AGTA GTG
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA
* * * *
99037999 CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATG ATG AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
99038046 CTA TTA AGTT ATA ATGA A-A ATA ATG ATA ATG ATG AT- ATA TTA GATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
99038092 ATA ATA GTA A-A ATA ATA AGTA ACA ATA ATAA ATT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA AT-A ATA ATA ATA ATA
99038135 GTGATGAGAA
Statistics
Matches: 197, Mismatches: 48, Indels: 40
0.69 0.17 0.14
Matches are distributed among these distances:
2 23 0.12
3 157 0.80
4 17 0.09
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:99038153 original size:16 final size:16
Alignment explanation
Indices: 99038134--99038165 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99038124 TTATAATAAT
99038134 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
99038150 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
99038166 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:99038299 original size:16 final size:15
Alignment explanation
Indices: 99038270--99038312 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
99038260 TATACGTATG
*
99038270 AAAAATAATGATAGT
1 AAAAATAATAATAGT
99038285 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
99038301 AATAATAATAAT
1 AAAAATAATAAT
99038313 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:99038413 original size:3 final size:3
Alignment explanation
Indices: 99038405--99038446 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
99038395 ACACACTACC
99038405 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
99038447 TAGAAATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99038548 original size:3 final size:3
Alignment explanation
Indices: 99038540--99038583 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
99038530 AAATATACAC
99038540 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
99038584 TTAAAATGCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:99039087 original size:22 final size:24
Alignment explanation
Indices: 99039061--99039111 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
99039051 CAAAAAAAAG
99039061 AAAAATC-CCTCTTGAATCTCAAAA
1 AAAAATCTCCTCTTGAATCTC-AAA
*
99039085 AAAAATCTCTTCTTGAATCTCAAA
1 AAAAATCTCCTCTTGAATCTCAAA
99039109 AAA
1 AAA
99039112 TTTCTTCTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (24 bp):
AAAAATCTCCTCTTGAATCTCAAA
Found at i:99039098 original size:25 final size:24
Alignment explanation
Indices: 99039056--99039111 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 24
99039046 AATCTCAAAA
99039056 AAAAGAAAAATCCCTCTTGAATCTC
1 AAAA-AAAAATCCCTCTTGAATCTC
*
99039081 AAAAAAAAATCTCTTCTTGAATCTC
1 AAAAAAAAATC-CCTCTTGAATCTC
99039106 AAAAAA
1 AAAAAA
99039112 TTTCTTCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (24 bp):
AAAAAAAAATCCCTCTTGAATCTC
Found at i:99039112 original size:22 final size:23
Alignment explanation
Indices: 99039061--99039119 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
99039051 CAAAAAAAAG
*
99039061 AAAAATC-CCTCTTGAATCTCAAAA
1 AAAAATCTCTTCTTGAATCTC--AA
99039085 AAAAATCTCTTCTTGAATCTC-A
1 AAAAATCTCTTCTTGAATCTCAA
*
99039107 AAAAATTTCTTCT
1 AAAAATCTCTTCT
99039120 CTCCAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 13 0.41
24 7 0.22
25 12 0.38
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.34
Consensus pattern (23 bp):
AAAAATCTCTTCTTGAATCTCAA
Found at i:99039328 original size:11 final size:11
Alignment explanation
Indices: 99039312--99039339 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
99039302 AGGTTTTTTC
99039312 TTTTTTGATTT
1 TTTTTTGATTT
99039323 TTTTTTGATTT
1 TTTTTTGATTT
99039334 TTTTTT
1 TTTTTT
99039340 TGGGTTGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (11 bp):
TTTTTTGATTT
Found at i:99039335 original size:12 final size:12
Alignment explanation
Indices: 99039307--99039341 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
99039297 AGATTAGGTT
99039307 TTTTCTTTTTTGA
1 TTTT-TTTTTTGA
99039320 -TTTTTTTTTGA
1 TTTTTTTTTTGA
99039331 TTTTTTTTTTG
1 TTTTTTTTTTG
99039342 GGTTGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.06, C:0.03, G:0.09, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:99040382 original size:205 final size:205
Alignment explanation
Indices: 99039692--99040480 Score: 1352
Period size: 204 Copynumber: 3.9 Consensus size: 205
99039682 AGATTTATTT
* * * * * * * * *
99039692 CTTCGATTTGATCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
99039757 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
99039821 GGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
99039886 AGATGCCAAA
196 AGATGCCAAA
99039896 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
99039961 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
99040026 GGAT-CGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
99040090 AGATGCCAAA
196 AGATGCCAAA
99040100 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
99040165 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
99040230 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
99040295 AGATGCCAAA
196 AGATGCCAAA
99040305 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
99040370 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
99040435 GGATCTGCTTCAG--TGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGT
99040481 GGCCTATTAC
Statistics
Matches: 561, Mismatches: 20, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
203 1 0.00
204 280 0.50
205 280 0.50
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:99044089 original size:46 final size:46
Alignment explanation
Indices: 99044036--99044211 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
99044026 TATTTGGGCA
99044036 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
99044082 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
99044129 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
99044175 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99044212 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:99044191 original size:93 final size:93
Alignment explanation
Indices: 99044032--99044203 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99044022 GGGATATTTG
* *
99044032 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99044097 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
99044125 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99044190 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
99044204 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:99049509 original size:40 final size:40
Alignment explanation
Indices: 99049443--99049609 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
99049433 AAATTGAATG
* * *
99049443 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
99049482 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99049522 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99049562 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99049602 ATATCCGG
1 ATATCCGG
99049610 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99056226 original size:56 final size:55
Alignment explanation
Indices: 99056134--99056243 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 55
99056124 TGAAAAAAAA
*
99056134 AAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGGAAAG
1 AAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAA-ATACTAAGGAAAG
* * ***
99056190 AAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATACTAAGGAAA
1 AAAAAAAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATACTAAGGAAA
99056244 AGGGGAGGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 13 0.28
56 34 0.72
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (55 bp):
AAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAATACTAAGGAAAG
Found at i:99057498 original size:40 final size:40
Alignment explanation
Indices: 99057432--99057598 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
99057422 AAATTGAATG
* * *
99057432 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
99057471 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99057511 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99057551 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99057591 ATATCCGG
1 ATATCCGG
99057599 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99063827 original size:40 final size:40
Alignment explanation
Indices: 99063719--99063828 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
99063709 ATTGAATGAT
* * * * *
99063719 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
99063759 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
99063799 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
99063829 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:99063843 original size:40 final size:39
Alignment explanation
Indices: 99063719--99063868 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
99063709 ATTGAATGAT
* * * * * * *
99063719 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
99063759 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
99063799 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
99063839 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
99063869 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:99069731 original size:49 final size:50
Alignment explanation
Indices: 99069666--99070095 Score: 206
Period size: 50 Copynumber: 8.5 Consensus size: 50
99069656 TCTGGTACGC
* * * * * *
99069666 ATAGTAGCCTACACTTAGAACTACACATGCAACCTATCAATTTGGTACA-
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGATACAT
* ** * *
99069715 GTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATATGATACAT
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGATACAT
** * * * * * *
99069765 ATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACAGGTATGC--
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAA--CAATATG-ATACAT
* * * * * * *
99069816 ATAGTAGCCTGCACTTAGTAGTACATATGCGACCTATCAATCTGATACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGATACAT
* * * * * ** * * * *
99069866 GTAGTAGCCAGCAATTAGTACTAAACATGTGACTTAACCATCTGATACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGATACAT
** * * ** * **
99069916 ATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-GTTAACGAGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAAT-ATGA-TACAT
* * * * *
99069967 ATAGTAGCCTGTACTTAGTACTACACATGCAACCTAGCAATCT-AGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGA-TACAT
* * ** * * *
99070017 GTAGTAGCGTGCACTTAGTACTACACACGTGACCTAA-AACTATCTTAAACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAA-TA--TGATACAT
*
99070069 ATAGTAGCCTGCACATAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
99070096 TGTGTTCTCA
Statistics
Matches: 289, Mismatches: 79, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
48 3 0.01
49 44 0.15
50 141 0.49
51 64 0.22
52 33 0.11
53 4 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (50 bp):
ATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACAATATGATACAT
Found at i:99069780 original size:50 final size:50
Alignment explanation
Indices: 99069716--99070095 Score: 291
Period size: 50 Copynumber: 7.5 Consensus size: 50
99069706 TTTGGTACAG
* *
99069716 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATATGATACATA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACA
* ** * * * **
99069766 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCAAAGTTAACAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACA
* * * * * * * *
99069817 TAGTAGCCTGCACTTAGTAGTACATATGCGACCTATCAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACA
* * * *
99069867 TAGTAGCCAGCAATTAGTACTAAACATGTGACTTAACCATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACA
* ** * *
99069917 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAAC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGA-TACACA
* * ** * * * *
99069968 TAGTAGCCTGTACTTAGTACTACACATGCAACCTAGCAATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGA-TACACA
* * * * *
99070018 TAGTAGCGTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CT-TAACCATCTGATACACA
*
99070070 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
99070096 TGTGTTCTCA
Statistics
Matches: 250, Mismatches: 69, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
49 2 0.01
50 144 0.58
51 69 0.28
52 34 0.14
53 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACA
Found at i:99069863 original size:101 final size:101
Alignment explanation
Indices: 99069716--99069897 Score: 238
Period size: 101 Copynumber: 1.8 Consensus size: 101
99069706 TTTGGTACAG
* * * * * *
99069716 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATATGATACATATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATATGATACACATAGTAGCCAGCAATT
*
99069781 AGTACTACACACGTGATCAAAGTTAACAGGTATGCA
66 AGTACTAAACACGTGATCAAAGTTAACAGGTATGCA
* * * * * *
99069817 TAGTAGCCTGCACTTAGTAGTACATATGCGACCTATCAATCTGATACACGTAGTAGCCAGCAATT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATATGATACACATAGTAGCCAGCAATT
*
99069882 AGTACTAAACATGTGA
66 AGTACTAAACACGTGA
99069898 CTTAACCATC
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
101 67 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATATGATACACATAGTAGCCAGCAATT
AGTACTAAACACGTGATCAAAGTTAACAGGTATGCA
Found at i:99069937 original size:151 final size:150
Alignment explanation
Indices: 99069659--99070095 Score: 608
Period size: 151 Copynumber: 2.9 Consensus size: 150
99069649 GAAGCTCTCT
* * * *
99069659 GGTACGCATAGTAGCCTACACTTAGAACTACACATGCAACCTATCAATTTGGTACA-GTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGATACACGTAGTAGC
* *
99069723 CTGCACTTAGTACTACACACGTGACTTAACCATATGATACATATAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
99069788 CACACGTGATCAAAGTTAAC
131 CACACGTGATCAAAGTTAAC
* * * *
99069808 AGGTATGCATAGTAGCCTGCACTTAGTAGTACATATGCGACCTATCAATCTGATACACGTAGTAG
1 -GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGATACACGTAGTAG
* * * *
99069873 CCAGCAATTAGTACTAAACATGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACT
65 CCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACT
*
99069938 ACACACGTGATCGAAGTTAAC
130 ACACACGTGATCAAAGTTAAC
* *
99069959 GAGTACGCATAGTAGCCTGTACTTAGTACTACACATGCAACCTAGCAATCT-AGTACACGTAGTA
1 G-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGA-TACACGTAGTA
* * * * * *
99070023 GCGTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACATAGTAGCCTGCACATAGT
64 GCCTGCACTTAGTACTACACACGTGA-CT-TAACCATCTGATACACATAGTAGCCTGCACTTAGT
99070088 ACTACACA
127 ACTACACA
99070096 TGTGTTCTCA
Statistics
Matches: 251, Mismatches: 31, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
150 50 0.20
151 161 0.64
152 2 0.01
153 38 0.15
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTA
CACACGTGATCAAAGTTAAC
Found at i:99069972 original size:101 final size:101
Alignment explanation
Indices: 99069867--99070048 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 101
99069857 CTGATACACG
** * *
99069867 TAGTAGCCAGCAATTAGTACTAAACATGTGACTTAACCATCT-GATACACATAGTAGCCTGCACT
1 TAGTAGCCAGCAATTAGTACTAAACATGCAACCTAACAATCTAG-TACACATAGTAGCCTGCACT
99069931 TAGTACTACACACGTGATCGAAGTTAACGAGTACGCA
65 TAGTACTACACACGTGATCGAAGTTAACGAGTACGCA
* * * * * * *
99069968 TAGTAGCCTGTACTTAGTACTACACATGCAACCTAGCAATCTAGTACACGTAGTAGCGTGCACTT
1 TAGTAGCCAGCAATTAGTACTAAACATGCAACCTAACAATCTAGTACACATAGTAGCCTGCACTT
99070033 AGTACTACACACGTGA
66 AGTACTACACACGTGA
99070049 CCTAAAACTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
101 68 0.99
102 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCAGCAATTAGTACTAAACATGCAACCTAACAATCTAGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGAGTACGCA
Found at i:99085560 original size:155 final size:155
Alignment explanation
Indices: 99085278--99085575 Score: 488
Period size: 155 Copynumber: 1.9 Consensus size: 155
99085268 GCTTACTTTG
*
99085278 TGTGTGCTTGCATTGTGCTTTAGATATCGAAGCTACTGGAAGCTCGAGGATTGTCGAGGATCATC
1 TGTGTGCTTGCATTGTGCTTTAGATATCGAAACTACTGGAAGCTCGAGGATTGTCGAGGATCATC
*
99085343 ACCACACTATCAAAATTATCTTTGATACTTTTTGAAAGTGTAAATATTAAACTATGGCATGTATA
66 ACCACACTATCAAAATTACCTTTGATACTTTTTGAAAGTGTAAATATTAAACTATGGCATGTATA
99085408 GTCTAGATAAATTAAGATTATTTTA
131 GTCTAGATAAATTAAGATTATTTTA
* * * * * *
99085433 TGTGTGTTTGCATTGTGTTTTAGATATCGAAACTACTGTAGGCTCGAGGATTGTTGAGGATCATT
1 TGTGTGCTTGCATTGTGCTTTAGATATCGAAACTACTGGAAGCTCGAGGATTGTCGAGGATCATC
* * * *
99085498 ACCACACTATCAAACTTACCTTTGGTACTTTTTGAAAGTGTAAATATTAAAGTATGGCATGTATT
66 ACCACACTATCAAAATTACCTTTGATACTTTTTGAAAGTGTAAATATTAAACTATGGCATGTATA
99085563 GTCTAGATAAATT
131 GTCTAGATAAATT
99085576 GTGATATGTT
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
155 131 1.00
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37
Consensus pattern (155 bp):
TGTGTGCTTGCATTGTGCTTTAGATATCGAAACTACTGGAAGCTCGAGGATTGTCGAGGATCATC
ACCACACTATCAAAATTACCTTTGATACTTTTTGAAAGTGTAAATATTAAACTATGGCATGTATA
GTCTAGATAAATTAAGATTATTTTA
Found at i:99092938 original size:93 final size:93
Alignment explanation
Indices: 99092826--99092996 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
99092816 GCCCATAAGT
*
99092826 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99092891 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
99092919 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
99092984 CGAGTTCGGATGC
66 CGAGCTCGGATGC
99092997 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:99092993 original size:46 final size:46
Alignment explanation
Indices: 99092818--99092993 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
99092808 TGTAACCCGC
*
99092818 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
99092864 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
99092910 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
99092957 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
99092994 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 70 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:99095390 original size:15 final size:15
Alignment explanation
Indices: 99095364--99095419 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
99095354 CAAGGAAACC
99095364 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
99095379 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
99095394 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
99095409 GAATAAAGAAA
1 GAATAAAGAAA
99095420 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:99098423 original size:46 final size:45
Alignment explanation
Indices: 99098356--99098529 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
99098346 TGTAACCCGC
99098356 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
99098402 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * *
99098448 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
99098495 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
99098530 ATGCAACCAT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
45 22 0.21
46 49 0.46
47 34 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:99098476 original size:93 final size:92
Alignment explanation
Indices: 99098364--99098533 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
99098354 GCCCATAAGT
* *
99098364 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCAA
99098429 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAGCTCGGATGCCTAGTTACATCTCTC
*
99098457 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
*
99098522 GAGTTCGGATGC
66 GAGCTCGGATGC
99098534 AACCATCCTA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 24 0.33
93 49 0.67
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:99105130 original size:93 final size:93
Alignment explanation
Indices: 99105018--99105189 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99105008 GCCCATAAGT
* *
99105018 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99105083 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
99105111 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99105176 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
99105190 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:99105185 original size:46 final size:46
Alignment explanation
Indices: 99105010--99105185 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
99105000 TGTAACCCGC
* * *
99105010 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
99105056 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
99105106 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
99105149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
99105186 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:99107608 original size:29 final size:29
Alignment explanation
Indices: 99107571--99107654 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
99107561 GATAACAAGA
*
99107571 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
99107599 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
99107628 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
99107655 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:99107620 original size:15 final size:15
Alignment explanation
Indices: 99107567--99107645 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
99107557 CAAAGATAAC
*
99107567 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
99107581 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
99107596 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
99107610 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
99107625 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
99107640 AAGAAA
1 AAGAAA
99107646 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:99107654 original size:15 final size:15
Alignment explanation
Indices: 99107578--99107654 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
99107568 AGAAAACCGA
99107578 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
99107593 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
99107606 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
99107621 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
99107637 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
99107652 ATA
1 ATA
99107655 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:99110679 original size:93 final size:93
Alignment explanation
Indices: 99110567--99110738 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99110557 GCCCATAAGT
* *
99110567 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99110632 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
99110660 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99110725 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
99110739 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:99110734 original size:46 final size:46
Alignment explanation
Indices: 99110559--99110734 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
99110549 TGTAACCCGC
* * *
99110559 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
99110605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
99110655 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
99110698 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
99110735 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:99116078 original size:40 final size:40
Alignment explanation
Indices: 99115943--99116165 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
99115933 TATTCGGATG
* *
99115943 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
99115983 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
99116025 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
99116065 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
99116105 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
99116145 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
99116166 ATACTTGGGT
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 40 0.24
40 88 0.53
41 2 0.01
42 10 0.06
43 26 0.16
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:99119084 original size:21 final size:21
Alignment explanation
Indices: 99119060--99119124 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
99119050 AAGTCTAGCT
* *
99119060 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACA
* * *
99119081 GAAGCTC-GAAG-GCT-AACT
1 GAAGCACACAAGTGCTAAACA
99119099 GAAGCACACAAGTGCTAAACA
1 GAAGCACACAAGTGCTAAACA
99119120 GAAGC
1 GAAGC
99119125 CTAGCACGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 9 0.26
19 6 0.17
20 6 0.17
21 14 0.40
ACGTcount: A:0.42, C:0.22, G:0.25, T:0.12
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACA
Found at i:99119112 original size:39 final size:39
Alignment explanation
Indices: 99119049--99119124 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
99119039 TTTAAAGCCT
* * * *
99119049 GAAGTCTAGCTGAAGCACATAAGTGCTAAACGGAAGCTC
1 GAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGCTC
99119088 GAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGC
1 GAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGC
99119125 CTAGCACGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGCTC
Found at i:99119143 original size:52 final size:52
Alignment explanation
Indices: 99119078--99119176 Score: 189
Period size: 52 Copynumber: 1.9 Consensus size: 52
99119068 TAAGTGCTAA
*
99119078 ACGGAAGCTCGAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGCCTAGC
1 ACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGCCTAGC
99119130 ACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGC
1 ACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGC
99119177 TTGAAGGCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.10
Consensus pattern (52 bp):
ACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACAGAAGCCTAGC
Found at i:99130786 original size:28 final size:28
Alignment explanation
Indices: 99130651--99130805 Score: 68
Period size: 28 Copynumber: 5.5 Consensus size: 28
99130641 AATTTTGAAA
* *
99130651 ATGGCACTTAGTGTATGAGTTAC-T-TAGG
1 ATGGCACTTAGTGTACGA--TACATCCAGG
* * * *
99130679 ATGGCAGTTAGTGTGCGAAACATCCAGAA
1 ATGGCACTTAGTGTACGATACATCCAG-G
* * * *
99130708 ATGGCTCTTAGTG-AGTGA-ATTATCGAGG
1 ATGGCACTTAGTGTA-CGATA-CATCCAGG
* * * *
99130736 ATGGCACTT-GCTATGCGAGACATCTAGG
1 ATGGCACTTAG-TGTACGATACATCCAGG
*
99130764 ATGGCACTTAGTGTACGATACATCCATG
1 ATGGCACTTAGTGTACGATACATCCAGG
* *
99130792 AAGGCACTAAGTGT
1 ATGGCACTTAGTGT
99130806 GCAAAACTTC
Statistics
Matches: 92, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
26 2 0.02
27 2 0.02
28 68 0.74
29 20 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGATACATCCAGG
Found at i:99136625 original size:49 final size:48
Alignment explanation
Indices: 99136553--99136786 Score: 243
Period size: 49 Copynumber: 4.7 Consensus size: 48
99136543 ATTTGGTATG
*
99136553 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CTGTACA
* * * ** *
99136602 CATAGTATCCTACACTTAGTACTACACACGTGACCTAACCATCTGATATA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTG-TACA
* * * * *
99136652 CGTAGTAGCCGGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC-TGTACA
*
99136703 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCT-GTACA
* * * * *
99136752 CGTAGTAGCCTGTAATTAGTACTACATACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
99136787 TCACAATAGA
Statistics
Matches: 151, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
49 73 0.48
50 41 0.27
51 36 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (48 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGTACA
Found at i:99136728 original size:101 final size:98
Alignment explanation
Indices: 99136555--99136786 Score: 284
Period size: 100 Copynumber: 2.3 Consensus size: 98
99136545 TTGGTATGCA
* * * *
99136555 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACATAGTATCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
* *
99136620 GTACTACACACGTGACCTAACCATCTGATATACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * * *
99136654 TAGTAGCCGGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACACT
* ** *
99136719 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
* * *
99136754 TAGTAGCCTGTAATTAGTACTACATACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
99136787 TCACAATAGA
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 29 0.26
100 42 0.38
101 41 0.37
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:99142150 original size:9 final size:9
Alignment explanation
Indices: 99142138--99142162 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
99142128 TTGCAACTGA
99142138 TCTTTCAAC
1 TCTTTCAAC
99142147 TCTTTCAAC
1 TCTTTCAAC
99142156 TCTTTCA
1 TCTTTCA
99142163 GAGCCATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (9 bp):
TCTTTCAAC
Found at i:99145667 original size:40 final size:40
Alignment explanation
Indices: 99145612--99145821 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99145602 AACATTGGAA
99145612 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99145652 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99145692 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
99145732 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
99145771 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
99145812 CTATATCCGG
1 ATATATCCGG
99145822 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:99153801 original size:40 final size:40
Alignment explanation
Indices: 99153746--99153955 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99153736 AACATTGGAA
99153746 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99153786 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99153826 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
99153866 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
99153905 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
99153946 CTATATCCGG
1 ATATATCCGG
99153956 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:99155606 original size:13 final size:12
Alignment explanation
Indices: 99155579--99155612 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
99155569 TAGATATGTT
99155579 TTGGTTGTGGAA
1 TTGGTTGTGGAA
*
99155591 TTGGTTAGTTGAA
1 TTGGTT-GTGGAA
99155604 TTGGTTGTG
1 TTGGTTGTG
99155613 AATAGATGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (12 bp):
TTGGTTGTGGAA
Found at i:99156774 original size:17 final size:18
Alignment explanation
Indices: 99156741--99156775 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
99156731 ACTCAATAGG
*
99156741 TAAATTCTTACTAGACAT
1 TAAATTCGTACTAGACAT
99156759 TAAATTCGTA-TAGACAT
1 TAAATTCGTACTAGACAT
99156776 ATGAATGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (18 bp):
TAAATTCGTACTAGACAT
Found at i:99159077 original size:40 final size:40
Alignment explanation
Indices: 99159026--99159217 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
99159016 GGATATAGCT
*
99159026 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
99159066 AATCGCACAAATTCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
99159106 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
99159146 ACTCGCACAAATGCCTTCGGGACTTAGCTCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
99159186 ACTAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
99159218 TTATCATCCG
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 139 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Done.