Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 318 of 425
Found at i:99166001 original size:56 final size:54
Alignment explanation
Indices: 99165907--99166016 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 54
99165897 TGAAAAAAAA
99165907 AAAGAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ***
99165961 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAG-AAA-AAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
99166017 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
54 4 0.08
55 5 0.10
56 36 0.75
57 3 0.06
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (54 bp):
AAAGAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:99167341 original size:78 final size:78
Alignment explanation
Indices: 99167210--99167358 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
99167200 AAATTGAATG
*
99167210 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
99167275 TTGTGCTATGGCT
66 TTGTGCTATGGCT
* * ** *
99167288 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
99167351 ATTTGTGC
64 AATTGTGC
99167359 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 4 0.06
78 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTATGGCT
Found at i:99167372 original size:40 final size:39
Alignment explanation
Indices: 99167210--99167374 Score: 158
Period size: 39 Copynumber: 4.2 Consensus size: 39
99167200 AAATTGAATG
* * **
99167210 ATATCCGGGCTAAGCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGC-GAGTGATT
* * **
99167249 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTA-TGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTGATT
*
99167288 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCGAGTGATT
* *
99167327 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGA-GTGATT
99167367 ATATCCGG
1 ATATCCGG
99167375 TTATATTCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
37 3 0.03
38 14 0.14
39 43 0.42
40 40 0.39
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTGATT
Found at i:99176345 original size:17 final size:17
Alignment explanation
Indices: 99176320--99176354 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
99176310 TTCAATTTCA
99176320 TAATTTATTC-ACTATT
1 TAATTTATTCTACTATT
99176336 TAATTCTATTCTACTATT
1 TAATT-TATTCTACTATT
99176354 T
1 T
99176355 TTAGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (17 bp):
TAATTTATTCTACTATT
Found at i:99177251 original size:29 final size:28
Alignment explanation
Indices: 99177217--99177377 Score: 144
Period size: 29 Copynumber: 5.6 Consensus size: 28
99177207 TACCCGATCA
* *
99177217 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* ** *
99177246 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTTAAGCT
*
99177275 CGCACACTTAGTGCCATAATGATTTAAGCC
1 CGCACACTTAGTGCCAT-AT-ATTTAAGCT
* ** *
99177305 CGCACAC-AAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTTAAGCT
*
99177333 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATATATTT-AAGCT
*
99177362 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
99177378 ATCTCGTCAC
Statistics
Matches: 104, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.01
28 15 0.14
29 74 0.71
30 13 0.12
31 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:99177288 original size:58 final size:58
Alignment explanation
Indices: 99177217--99177350 Score: 243
Period size: 58 Copynumber: 2.3 Consensus size: 58
99177207 TACCCGATCA
*
99177217 CGCACACTTAGTGCCAT-GTGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATAATGATTTAAGCCCGCACACA-AGTGCCATATAGTCCAAACT
99177275 CGCACACTTAGTGCCATAATGATTTAAGCCCGCACACAAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATAATGATTTAAGCCCGCACACAAGTGCCATATAGTCCAAACT
99177333 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
99177351 CATTTCAAGC
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
58 55 0.74
59 19 0.26
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (58 bp):
CGCACACTTAGTGCCATAATGATTTAAGCCCGCACACAAGTGCCATATAGTCCAAACT
Found at i:99177375 original size:58 final size:55
Alignment explanation
Indices: 99177217--99177377 Score: 214
Period size: 58 Copynumber: 2.8 Consensus size: 55
99177207 TACCCGATCA
*
99177217 CGCACACTTAGTGCCATGTGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCA--TAATTTAAGCCCGCACAC-TAGTGCCATATAGTCCAAACT
*
99177275 CGCACACTTAGTGCCATAATGATTTAAGCCCGCACACAAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-A--ATTTAAGCCCGCACACTAGTGCCATATAGTCCAAACT
*
99177333 CGCACACTTAGTGCCATACATTTCAAGCTCGCACACTCAGTGCCA
1 CGCACACTTAGTGCCATA-ATTT-AAGCCCGCACACT-AGTGCCA
99177378 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
56 5 0.05
57 12 0.13
58 60 0.65
59 16 0.17
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (55 bp):
CGCACACTTAGTGCCATAATTTAAGCCCGCACACTAGTGCCATATAGTCCAAACT
Found at i:99180138 original size:17 final size:18
Alignment explanation
Indices: 99180096--99180144 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
99180086 AGTTGAAAAG
99180096 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
99180115 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
99180132 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
99180145 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:99181032 original size:40 final size:40
Alignment explanation
Indices: 99180966--99181132 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99180956 AAATTGAATG
* * *
99180966 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
99181005 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99181045 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99181085 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99181125 ATATCCGG
1 ATATCCGG
99181133 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99188144 original size:17 final size:18
Alignment explanation
Indices: 99188102--99188150 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
99188092 AGTTGAAAAG
99188102 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
99188121 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
99188138 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
99188151 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:99189038 original size:40 final size:40
Alignment explanation
Indices: 99188972--99189138 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99188962 AAATTGAATG
* * *
99188972 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
99189011 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99189051 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99189091 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99189131 ATATCCGG
1 ATATCCGG
99189139 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99201056 original size:41 final size:41
Alignment explanation
Indices: 99201011--99201128 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99201001 TGAAAGATAA
99201011 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99201052 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99201082 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99201123 ATGTAG
1 ATGTAG
99201129 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99201067 original size:71 final size:71
Alignment explanation
Indices: 99200979--99201142 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99200969 GAGATGTATC
99200979 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99201044 AGGACA
66 AGGACA
99201050 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99201115 AGGACA
66 AGGACA
99201121 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99201143 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99203272 original size:6 final size:6
Alignment explanation
Indices: 99203261--99203504 Score: 171
Period size: 6 Copynumber: 39.8 Consensus size: 6
99203251 TATCATAACT
* * *
99203261 AGAATC AGAATC AGAATC AGAATT AGAATC AAAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * *
99203310 AAAATC AAAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
99203359 AGGTAA-C AGAATC AGAATC AGAA-C AGAATC AAAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
99203408 AGAATC AGTATT AGGTAA-C AGAATC AGAATC AGAATC AGTATC AGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* * *
99203457 AGAATC AGAATT AGAATC AGAATT AGGTGAT- AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
99203505 GTGAATGCAA
Statistics
Matches: 188, Mismatches: 29, Indels: 42
0.73 0.11 0.16
Matches are distributed among these distances:
5 18 0.10
6 147 0.78
7 14 0.07
8 9 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:99203308 original size:37 final size:37
Alignment explanation
Indices: 99203266--99203479 Score: 116
Period size: 37 Copynumber: 5.6 Consensus size: 37
99203256 TAACTAGAAT
** *
99203266 CAGAATCAGAATCAGAATTAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAACCAGAATCAAAATCAGGTAA
* * * *
99203303 CAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAACCAGAATCAAAATCAGGTAA
* *
99203340 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAG----A---ACCAGAATCAAAATCAGGTAA
* * * *
99203382 CAGAATCAAAATTAGGTAA-CAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCA-G-AACCAGAATCAAAATCAGGTAA
* * **
99203419 TAGGTAA-CAGAATCAGAATCAGAATCAGTATCA-GTAA
1 CA-G-AATCAGAATCAGAACCAGAATCAAAATCAGGTAA
* *
99203456 CAGAATCAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAACCAGAAT
99203480 TAGGTGATAG
Statistics
Matches: 142, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
35 2 0.01
36 35 0.25
37 64 0.45
38 7 0.05
39 2 0.01
40 1 0.01
41 1 0.01
42 14 0.10
43 2 0.01
44 14 0.10
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (37 bp):
CAGAATCAGAATCAGAACCAGAATCAAAATCAGGTAA
Found at i:99203351 original size:25 final size:25
Alignment explanation
Indices: 99203321--99203504 Score: 104
Period size: 25 Copynumber: 7.5 Consensus size: 25
99203311 AAATCAAAAC
*
99203321 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
99203346 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
99203371 CAGAATCAGAA-CA-G-AATCAAAAT
1 CAGAATCAGAATCAGGTAA-CAGAAT
* *
99203394 TAGGTAA-CAGAATCA-G-AATCAGTAT
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
99203419 TAGGTAA-CAGAATCA-G-AATCAGAAT
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
99203444 CAGTATCAGTAA-CA-G-AATCAGAAT
1 CAGAATCAG-AATCAGGTAA-CAGAAT
* * * *
99203468 TAGAATCAGAATTAGGTGATAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
99203493 CAGAATCAGAAT
1 CAGAATCAGAAT
99203505 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 16, Indels: 18
0.80 0.10 0.11
Matches are distributed among these distances:
22 2 0.01
23 10 0.07
24 32 0.24
25 89 0.66
26 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:99203410 original size:61 final size:62
Alignment explanation
Indices: 99203278--99203503 Score: 253
Period size: 61 Copynumber: 3.7 Consensus size: 62
99203268 GAATCAGAAT
* * * * * *
99203278 CAGAATTAGAATCAAAATCAGGTGACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAACCAGAATCAAAATTAGGTAA
*
99203340 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA-CAGAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAACCAGAATCAAAATTAGGTAA
* * * * * *
99203401 CAGAATCAGAATCAGTATTAGGTAACAGAATCAGAATCAGAATCAGTATCAGTAA-CA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAACCAGAATCA-AAATTAGGTAA
* * * *
99203461 TCAGAATTAGAATCAGAATTAGGTGATAGAATCAGAATCAGAA
1 -CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAA
99203504 TGTGAATGCA
Statistics
Matches: 146, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
60 2 0.01
61 98 0.67
62 44 0.30
63 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAACCAGAATCAAAATTAGGTAA
Found at i:99203431 original size:19 final size:19
Alignment explanation
Indices: 99203266--99203467 Score: 129
Period size: 19 Copynumber: 10.6 Consensus size: 19
99203256 TAACTAGAAT
99203266 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* * *
99203283 TTAGAATCAAAATCAGGTGA
1 -CAGAATCAGAATCAGGTAA
* *
99203303 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
*
99203320 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
99203340 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
99203365 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
99203382 CAGAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGGTAA
*
99203401 CAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGGTAA
*
99203419 TAGGTAA-CAGAATCA-G-AA
1 CA-G-AATCAGAATCAGGTAA
*
99203437 TCAGAATCAGTATCA-GTAA
1 -CAGAATCAGAATCAGGTAA
99203456 CAGAATCAGAAT
1 CAGAATCAGAAT
99203468 TAGAATCAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 36
0.72 0.10 0.18
Matches are distributed among these distances:
17 17 0.12
18 51 0.35
19 54 0.37
20 5 0.03
21 1 0.01
23 1 0.01
25 17 0.12
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:99203976 original size:27 final size:27
Alignment explanation
Indices: 99203920--99204436 Score: 568
Period size: 27 Copynumber: 19.2 Consensus size: 27
99203910 GGGCAAAATG
* * * * *
99203920 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
99203946 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
99203973 GTAATTTTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
99204000 GTAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
99204026 GATAATTCTACCCTGTAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
99204054 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
99204081 GTAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
99204107 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
99204135 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
99204162 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
99204189 GTAATTCTACCCT-CTAGGGGTATTGC-
1 GTAATTCTACCCTAC-AGGGGTATTTCA
*
99204215 GATAATTCTACCCTACAGGGGTA-TTCC
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
99204242 GATAATTCTACCCTATAGGAGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
99204270 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
99204297 ATAATTCTACTCTACAGGGGTA-TTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
99204323 GTAATTCTACCTTACTA-GGGTATTTTA
1 GTAATTCTACCCTAC-AGGGGTATTTCA
* **
99204350 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * * *
99204377 GTAATTTTACAAACTAGAGGTGT-TTT-G
1 GTAATTCTAC--CCTACAGGGGTATTTCA
*
99204404 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
99204431 GTAATT
1 GTAATT
99204437 TCATAATTGA
Statistics
Matches: 420, Mismatches: 54, Indels: 33
0.83 0.11 0.07
Matches are distributed among these distances:
25 8 0.02
26 43 0.10
27 352 0.84
28 10 0.02
29 7 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:99204526 original size:27 final size:27
Alignment explanation
Indices: 99204445--99204925 Score: 291
Period size: 27 Copynumber: 18.0 Consensus size: 27
99204435 TTTCATAATT
*
99204445 GAGGGTAAAAC-GATAATTTTGTAAATC
1 GAGGGTAAAACAG-TAATTCTGTAAATC
* *
99204472 AAGGGTAAAATAGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
99204499 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* ****** *
99204526 GATGGTCCTTTGGTAATT-TTTACAAGTC
1 GAGGGTAAAACAGTAATTCTGTA-AA-TC
* *** * ** *
99204554 GAAGGTATTTCAGTAATTTTACAAATTA
1 GAGGGTAAAACAGTAATTCTGTAAA-TC
* **** * * * *
99204582 GGGGGTATTTTAGTTATTTTGTGAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
** *
99204609 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
99204636 GAGGGTACAACGGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
99204663 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
99204690 GAGGGTAAAACGGTAATTCTGTAAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
** *
99204717 GAGGGTAAAATGGTAA-TC-CT--ATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *** * **
99204740 ----TTATTTCAGTAATTTTACAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* ***** * *
99204763 GAGGATATTTGGGTAATTTTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
99204790 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
99204817 GAGGGTAAAACAATAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
**
99204844 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
99204870 TGAGGGTAAAACGGTAATTCTGTAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
*
99204898 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
99204925 G
1 G
99204926 GGAGTACTTT
Statistics
Matches: 361, Mismatches: 79, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
19 6 0.02
20 1 0.00
23 5 0.01
25 1 0.00
26 6 0.02
27 302 0.84
28 38 0.11
29 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTGTAAATC
Found at i:99204699 original size:81 final size:81
Alignment explanation
Indices: 99204429--99204925 Score: 345
Period size: 81 Copynumber: 6.2 Consensus size: 81
99204419 AGGGGTATTT
* * * * * * **
99204429 CAGTAATT-TCAT-AATTGAGGGTAAAACGATAATTTTGTAAATCAAGGGTAAAATAGTAATTCT
1 CAGTAATTCT-ATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
99204492 GTAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* **** * * *** * *
99204509 CAGTAATTCTATAAATCGATGGTCCTTTGGTAATT-TTTACAAGTCGAAGGTATTTCAGTAATTT
1 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA-AA-TCGAGGGTAAAACGGTAATTC
** * * ***
99204573 TACAAATTAGGGGGTATTT
64 TGTAAA-TCGAGGGTAAAA
* * * * * * *
99204592 TAGTTATTTTGTGAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTACAACGGTAATTCTG
1 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
99204657 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
99204673 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAA-TC-C
1 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
* ***
99204736 T--ATC----TTATTT
66 TAAATCGAGGGTAAAA
* * * ** * *
99204746 CAGTAATTTTACAAATCGAGGAT-ATTTGGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCT
1 CAGTAATTCTATAAATCGAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
*
99204810 ATAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* * *
99204827 CAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCT
99204891 GTAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* *
99204908 CGGTAATTCTGTAAATCG
1 CAGTAATTCTATAAATCG
99204926 GGAGTACTTT
Statistics
Matches: 307, Mismatches: 93, Indels: 33
0.71 0.21 0.08
Matches are distributed among these distances:
72 1 0.00
73 49 0.16
74 2 0.01
75 1 0.00
77 6 0.02
79 1 0.00
80 16 0.05
81 156 0.51
82 39 0.13
83 33 0.11
84 3 0.01
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.32
Consensus pattern (81 bp):
CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:99204877 original size:181 final size:182
Alignment explanation
Indices: 99204429--99204914 Score: 521
Period size: 181 Copynumber: 2.6 Consensus size: 182
99204419 AGGGGTATTT
* * * * *
99204429 CAGTAATT-TCAT-AATTGAGGGTAAAACGATAATTTTGTAAATCAAGGGTAAAATAGTAATTCT
1 CAGTAATTCT-ATAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACAGTAATTCT
* * * * ***** * *
99204492 GTAAATCGAGGGTAAAACAGTAATTCTATAAATCGATGGTCCTTTGGTAATTTTTACAAGTCGAA
65 ATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAA----TCCTA-TC---
* * * * * * * *
99204557 GGTATTTCAGTAATTTTACAAATTAGGGGGTATTTTAGTTATTTTGTGAATTGAGGGTAAAA
122 -TTATTTCAGTAATTTTACAAATTAGAGGATATTTGAGTAATTTTATAAATCGAGGGTAAAA
** * **
99204619 TGGTAATTCTATAAATCGAGGGTACAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
1 CAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
* *
99204684 TAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATCCTATCTTATTTCAG
66 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATCCTATCTTATTTCAG
* *
99204749 TAATTTTACAAA-TCGAGGATATTTGGGTAATTTTATAAATCGAGGGTAAAA
131 TAATTTTACAAATTAGAGGATATTTGAGTAATTTTATAAATCGAGGGTAAAA
** *
99204800 CAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
1 CAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
99204865 TAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
66 TAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
99204915 TCTGTAAATC
Statistics
Matches: 254, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
180 1 0.00
181 133 0.52
182 20 0.08
186 2 0.01
187 3 0.01
190 8 0.03
191 87 0.34
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.32
Consensus pattern (182 bp):
CAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATCCTATCTTATTTCAG
TAATTTTACAAATTAGAGGATATTTGAGTAATTTTATAAATCGAGGGTAAAA
Found at i:99204956 original size:81 final size:80
Alignment explanation
Indices: 99204758--99204956 Score: 235
Period size: 81 Copynumber: 2.5 Consensus size: 80
99204748 GTAATTTTAC
99204758 AAATCGAGGA-TATTTGGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGG
1 AAATCGAGGAGTATTT-GGTAATTTTA-AAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGG
99204822 TAAAACAATAATTCTGT
64 TAAAACAATAATTCTGT
** * * *
99204839 AAATCGAGG-GTAAAATGGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGG
1 AAATCGAGGAGT-ATTTGGTAATT-T-TAAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGG
**
99204902 GTAAAACGGTAATTCTGT
63 GTAAAACAATAATTCTGT
*
99204920 AAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AAATCGAGGAGTA-TTTGGTAATTTTA-AAATCGAGGG
99204957 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
79 2 0.02
80 7 0.07
81 83 0.83
82 6 0.06
83 2 0.02
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (80 bp):
AAATCGAGGAGTATTTGGTAATTTTAAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
AAACAATAATTCTGT
Found at i:99212714 original size:30 final size:28
Alignment explanation
Indices: 99212678--99212778 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 28
99212668 GACAAGATTG
99212678 GCACTAAGTGTGCGAGTTTAAAATTGTTCA
1 GCACTAAGTGTGCGAGTTTAAAATT-TT-A
*
99212708 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATT-T-TA
* * *
99212736 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTTAAAAT-TTTA
99212765 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
99212779 GATTCACTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
28 22 0.36
29 17 0.28
30 21 0.34
31 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAAAATTTTA
Found at i:99212790 original size:29 final size:28
Alignment explanation
Indices: 99212707--99212782 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
99212697 AAAATTGTTC
* *
99212707 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
99212735 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
99212764 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
99212783 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:99214563 original size:56 final size:56
Alignment explanation
Indices: 99214501--99214635 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 56
99214491 TCCCAGATAG
* * * *
99214501 GGTCTTACTCGCAAACGTATATCAGAATCACATATCGATGTCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * *
99214557 GGTCTTACTCGCACACATATATTATAATCACATATCGATGCCAACGTGTTAAACAT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
99214613 GGTCTTACTCGCACACATATATC
1 GGTCTTACTCGCACACATATATC
99214636 GATGCCATGG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
Found at i:99215187 original size:30 final size:29
Alignment explanation
Indices: 99215153--99215216 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 29
99215143 TGTTCATAGA
*
99215153 AGTCCAT-ACATT-TCATTTGTTTCACATTTT
1 AGTCCATCAAATTATCATTT-TTTCA-A-TTT
*
99215183 AGTCCCTCAAATTATCATTTTTTCAATTT
1 AGTCCATCAAATTATCATTTTTTCAATTT
99215212 AGTCC
1 AGTCC
99215217 TAATTACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 8 0.27
30 7 0.23
31 9 0.30
32 6 0.20
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (29 bp):
AGTCCATCAAATTATCATTTTTTCAATTT
Found at i:99219064 original size:16 final size:16
Alignment explanation
Indices: 99219043--99219073 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99219033 ATATATTTCC
*
99219043 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
99219059 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
99219074 TAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:99219352 original size:56 final size:57
Alignment explanation
Indices: 99219259--99219429 Score: 231
Period size: 56 Copynumber: 3.0 Consensus size: 57
99219249 GGTCTTACAT
** * * *
99219259 ATAATCACATATCGATGCC-ACTGTCCTAGACAGGGTCTTACTCGCAAACGTATATCG
1 ATAATCACATATCGATGCCAAC-GTATTAAACATGGTCTTACTCGCACACGTATATCG
* *
99219316 A-AATCACATATCGATGTCAACGTATTAAACGTGGTCTTACTCGCACACGTATATC-
1 ATAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACGTATATCG
* *
99219371 ATAATCACATATCGATGCCAACGTGTTAAACATGGTCTTACTCGCACACATATATCG
1 ATAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACGTATATCG
99219428 AT
1 AT
99219430 GCCATGGTCT
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
55 1 0.01
56 94 0.94
57 5 0.05
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (57 bp):
ATAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACGTATATCG
Found at i:99219980 original size:30 final size:30
Alignment explanation
Indices: 99219946--99220010 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
99219936 TGTTCATACA
*
99219946 AGTCCAT-ACATT-TCATTTGTTTCACATTTT
1 AGTCCATCAAATTATCATTTGTTTCA-A-TTT
* *
99219976 AGTCCCTCAAATTATCATTTTTTTCAATTT
1 AGTCCATCAAATTATCATTTGTTTCAATTT
99220006 AGTCC
1 AGTCC
99220011 TAATTACTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 14 0.47
31 5 0.17
32 11 0.37
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.48
Consensus pattern (30 bp):
AGTCCATCAAATTATCATTTGTTTCAATTT
Found at i:99225397 original size:42 final size:43
Alignment explanation
Indices: 99225317--99225416 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
99225307 CCGGGCGTGG
* *
99225317 TCTTACATGTAATTCAGTATCGATGCCTCTATCCCAGACAGGC
1 TCTTACATGTAAATCAGTATCGATGCCTATATCCCAGACAGGC
* * * *
99225360 TCTTACATG-AAATCAG-ATACGATGCCTATGTCTCAGACATGT
1 TCTTACATGTAAATCAGTAT-CGATGCCTATATCCCAGACAGGC
99225402 TCTTACATGTAAATC
1 TCTTACATGTAAATC
99225417 TCAAATCGAG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 33 0.67
43 14 0.29
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (43 bp):
TCTTACATGTAAATCAGTATCGATGCCTATATCCCAGACAGGC
Found at i:99225441 original size:44 final size:42
Alignment explanation
Indices: 99225348--99225452 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 42
99225338 GATGCCTCTA
* * * *
99225348 TCCCAGACAGGCTCTTACATGAAATCAGATACGATGCCTATG
1 TCCCAGACATGCTCTTACATGAAATCAAATACGAGGCATATG
* *
99225390 TCTCAGACATGTTCTTACATGTAAATCTCAAAT-CGAGGCATATG
1 TCCCAGACATGCTCTTACATG-AAA--TCAAATACGAGGCATATG
*
99225434 TCCCAGACATGGTCTTACA
1 TCCCAGACATGCTCTTACA
99225453 CGATATCTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
42 18 0.35
43 3 0.06
44 26 0.50
45 5 0.10
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGCTCTTACATGAAATCAAATACGAGGCATATG
Found at i:99232860 original size:42 final size:43
Alignment explanation
Indices: 99232814--99232920 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 43
99232804 GGTGCCTCTA
* * *
99232814 TCCCAGACAAGGTCTTACATG-AAA-TCAGATACGATGCCTATG
1 TCCCAGACAAGGTCTTACACGTAAAGTCAAAT-CGAGGCCTATG
* *
99232856 TCCCAGACATGGTCTTACACGTAAATGTCAAATCGAGGCCTGTG
1 TCCCAGACAAGGTCTTACACGTAAA-GTCAAATCGAGGCCTATG
* *
99232900 TCCTAGACACGGTCTTACACG
1 TCCCAGACAAGGTCTTACACG
99232921 ATATCTCAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 19 0.35
43 3 0.05
44 28 0.51
45 5 0.09
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (43 bp):
TCCCAGACAAGGTCTTACACGTAAAGTCAAATCGAGGCCTATG
Found at i:99234234 original size:56 final size:56
Alignment explanation
Indices: 99234174--99234308 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
99234164 CCAAACAGGG
*
99234174 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAATGTATTAAATGTGA
1 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAATGTATTAAACGTGA
** * *
99234230 TCTTACTCGCACACATATATCGGAATCACATATTGATGCCAATGTATTAAACGTGG
1 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAATGTATTAAACGTGA
* * *
99234286 TTTTACTCCCATACATATATCAA
1 TCTTACTCGCACACATATATCAA
99234309 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAATGTATTAAACGTGA
Found at i:99240403 original size:29 final size:27
Alignment explanation
Indices: 99240369--99240471 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
99240359 TACTCGATCA
*
99240369 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
99240398 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
99240427 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
99240456 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
99240472 ATCTCGTCAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:99244839 original size:25 final size:25
Alignment explanation
Indices: 99244811--99244859 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
99244801 CCAGAGGACC
* *
99244811 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
*
99244836 AATCACATAACTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
99244860 AATAATAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:99248220 original size:68 final size:70
Alignment explanation
Indices: 99248148--99248345 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
99248138 ACACCCTGTA
* * * *
99248148 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
99248210 ATAAAT
65 ATAAAT
*
99248216 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
99248281 ATAAAT
65 ATAAAT
*
99248287 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
99248346 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:99248259 original size:41 final size:41
Alignment explanation
Indices: 99248214--99248331 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99248204 TGAAAGATAA
99248214 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99248255 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99248285 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99248326 ATGTAG
1 ATGTAG
99248332 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99248271 original size:71 final size:71
Alignment explanation
Indices: 99248182--99248345 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99248172 GAGATGTATC
99248182 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99248247 AGGACA
66 AGGACA
99248253 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99248318 AGGACA
66 AGGACA
99248324 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99248346 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99260716 original size:15 final size:14
Alignment explanation
Indices: 99260674--99260723 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
99260664 ATAACTTTGA
*
99260674 ATGCAAATGATGTG
1 ATGCAAATGATGAG
99260688 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
99260703 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
99260717 ATGCAAA
1 ATGCAAA
99260724 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:99264677 original size:3 final size:3
Alignment explanation
Indices: 99264669--99264803 Score: 80
Period size: 3 Copynumber: 44.7 Consensus size: 3
99264659 AAAGTAGTGC
* * * *
99264669 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TGA TGA T-C
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
99264716 TAT TAA GTTA TAA TGAA -AA TAA TGA TAA TGA TGA T-A TAT TAGA TAA
1 TAA TAA -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * *
99264762 TAA TAG TAA -AA TAA TAA GTAA CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TA
99264804 GTGATGAGAA
Statistics
Matches: 106, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
2 7 0.07
3 87 0.82
4 12 0.11
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:99264822 original size:16 final size:16
Alignment explanation
Indices: 99264803--99264834 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99264793 TTATAATAAT
99264803 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
99264819 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
99264835 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:99264967 original size:16 final size:15
Alignment explanation
Indices: 99264938--99264980 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
99264928 TATACGTATG
*
99264938 AAAAATAATGATAGT
1 AAAAATAATAATAGT
99264953 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
99264969 AATAATAATAAT
1 AAAAATAATAAT
99264981 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:99265083 original size:3 final size:3
Alignment explanation
Indices: 99265075--99265116 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
99265065 ACACTACCAT
99265075 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
99265117 TAGAAATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99265218 original size:3 final size:3
Alignment explanation
Indices: 99265210--99265253 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
99265200 AAATATACAC
99265210 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
99265254 TTAAAATGCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:99266011 original size:11 final size:12
Alignment explanation
Indices: 99265978--99266011 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
99265968 AGATTAGGTT
99265978 TTTTCTTTTTTGA
1 TTTT-TTTTTTGA
99265991 TTTTTTTTTT-A
1 TTTTTTTTTTGA
99266002 TTTTTTTTTT
1 TTTTTTTTTT
99266012 TTGGGTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 6 0.29
13 4 0.19
ACGTcount: A:0.06, C:0.03, G:0.03, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:99268686 original size:55 final size:55
Alignment explanation
Indices: 99268595--99268712 Score: 202
Period size: 55 Copynumber: 2.1 Consensus size: 55
99268585 GCTTAAAAAT
*
99268595 AATATATAATAAATAATGAAACGTATGGTTTCAACGTATTAATAATAAGTTATAC
1 AATATATAATAAATAATGAAACGTATGGTTTAAACGTATTAATAATAAGTTATAC
*
99268650 AATATATAATAAATAAT-TAACGTATGGTTTAAAACGTATTAATAATAAGTTATAC
1 AATATATAATAAATAATGAAACGTATGGTTT-AAACGTATTAATAATAAGTTATAC
99268705 AATATATA
1 AATATATA
99268713 TGATATTAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
54 12 0.20
55 48 0.80
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (55 bp):
AATATATAATAAATAATGAAACGTATGGTTTAAACGTATTAATAATAAGTTATAC
Found at i:99272908 original size:31 final size:30
Alignment explanation
Indices: 99272852--99272909 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
99272842 TAGCAAAATT
* *
99272852 AATAATAAAACAAGAGTTATACAATATCCA
1 AATAATAAAACAAGAATAATACAATATCCA
99272882 AATAATAAAAACAA-AATAATAGCAATAT
1 AATAAT-AAAACAAGAATAATA-CAATAT
99272910 AATAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.22
Consensus pattern (30 bp):
AATAATAAAACAAGAATAATACAATATCCA
Found at i:99273304 original size:15 final size:15
Alignment explanation
Indices: 99273280--99273312 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
99273270 GTGACATGTG
99273280 AAAAAAAAATT-ATA
1 AAAAAAAAATTAATA
99273294 AAAATAAAAATTAATA
1 AAAA-AAAAATTAATA
99273310 AAA
1 AAA
99273313 GAACAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 7 0.41
16 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAAAAAATTAATA
Found at i:99273365 original size:27 final size:28
Alignment explanation
Indices: 99273323--99273386 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
99273313 GAACAAACAT
99273323 TATT-AAATTTTAATAAAAAT-ATTAAAA
1 TATTAAAATTTTAATAAAAATCA-TAAAA
99273350 TATTAAAATTTT-ATAAAAATCATAAAA
1 TATTAAAATTTTAATAAAAATCATAAAA
*
99273377 AATATAAAAT
1 TAT-TAAAAT
99273387 ACATCAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 19 0.58
28 14 0.42
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TATTAAAATTTTAATAAAAATCATAAAA
Found at i:99273597 original size:20 final size:21
Alignment explanation
Indices: 99273563--99273628 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
99273553 CTTCTTTTGG
99273563 TACGCTAATTTTTATAATTTTTT
1 TACG-TAA-TTTTATAATTTTTT
*
99273586 TACG-AATTTTAT-ATTTCTT
1 TACGTAATTTTATAATTTTTT
** *
99273605 TACGTTTTTTTATAATTTTCT
1 TACGTAATTTTATAATTTTTT
99273626 TAC
1 TAC
99273629 AACTTTACAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 10 0.28
20 12 0.33
21 10 0.28
23 4 0.11
ACGTcount: A:0.24, C:0.11, G:0.05, T:0.61
Consensus pattern (21 bp):
TACGTAATTTTATAATTTTTT
Found at i:99273664 original size:19 final size:19
Alignment explanation
Indices: 99273640--99273706 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 19
99273630 ACTTTACAAA
99273640 ATTTTATAATTTTTTCTAT
1 ATTTTATAATTTTTTCTAT
*
99273659 ATTTTATAATTTTTTACAAT
1 ATTTTATAATTTTTT-CTAT
99273679 -TTTTATAATTTTTTTCTA-
1 ATTTTATAA-TTTTTTCTAT
*
99273697 ATTTTTTAAT
1 ATTTTATAAT
99273707 AAAATTTAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
18 1 0.02
19 32 0.76
20 9 0.21
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTATAATTTTTTCTAT
Found at i:99273683 original size:38 final size:39
Alignment explanation
Indices: 99273632--99273706 Score: 109
Period size: 38 Copynumber: 1.9 Consensus size: 39
99273622 TTCTTACAAC
99273632 TTTACAAAATTTTATAA-TTTTTTCTATATTTTATAATTT
1 TTTACAAAATTTTATAATTTTTTTCTA-ATTTTATAATTT
* *
99273671 TTTAC-AATTTTTATAATTTTTTTCTAATTTTTTAAT
1 TTTACAAAATTTTATAATTTTTTTCTAATTTTATAAT
99273707 AAAATTTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 19 0.58
39 14 0.42
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (39 bp):
TTTACAAAATTTTATAATTTTTTTCTAATTTTATAATTT
Found at i:99273723 original size:30 final size:29
Alignment explanation
Indices: 99273689--99273762 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 29
99273679 TTTTATAATT
99273689 TTTTTCTAATTTTTTAATAAAATTTAACT-A
1 TTTTT-TAATTTTTTAATAAAATTTAA-TAA
*
99273719 TTTTTTATATTTTTTATTAAAATTTAATAA
1 TTTTTTA-ATTTTTTAATAAAATTTAATAA
*
99273749 TTTTTATAACTTTT
1 TTTTT-TAATTTTT
99273763 ATTTTTTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 3 0.08
30 34 0.87
31 2 0.05
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTTTAATTTTTTAATAAAATTTAATAA
Found at i:99273752 original size:29 final size:30
Alignment explanation
Indices: 99273697--99273765 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
99273687 TTTTTTTCTA
* *
99273697 ATTTTTTAATAAAATTTAACTATTTTTTAT
1 ATTTTTTATTAAAATTTAACTAATTTTTAT
99273727 ATTTTTTATTAAAATTTAA-TAATTTTTAT
1 ATTTTTTATTAAAATTTAACTAATTTTTAT
**
99273756 AACTTTTATT
1 ATTTTTTATT
99273766 TTTTTTATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 17 0.49
30 18 0.51
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTTTTTATTAAAATTTAACTAATTTTTAT
Found at i:99281287 original size:66 final size:68
Alignment explanation
Indices: 99281211--99281397 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
99281201 TAGTACCACT
*
99281211 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
99281273 CACG
65 CACG
99281277 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
99281342 ATCACG
63 ATCACG
99281348 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
99281398 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:99281322 original size:71 final size:71
Alignment explanation
Indices: 99281234--99281397 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99281224 CGATTTGTCT
99281234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
99281299 CTTTCA
66 CTTTCA
99281305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
99281370 CTTTCA
66 CTTTCA
99281376 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
99281398 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:99281435 original size:71 final size:70
Alignment explanation
Indices: 99281234--99281431 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
99281224 CGATTTGTCT
* * *
99281234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
99281299 CTTTCA
65 CTTTCA
* * *
99281305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
99281370 CTTTCA
65 CTTTCA
* *
99281376 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
99281432 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:99301660 original size:24 final size:24
Alignment explanation
Indices: 99301633--99301681 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
99301623 AGAGCTAGTG
99301633 TAAGAACATGTTTGAGACATGGCA
1 TAAGAACATGTTTGAGACATGGCA
*
99301657 TAAGACCATGTTTGAGACATGGCA
1 TAAGAACATGTTTGAGACATGGCA
99301681 T
1 T
99301682 CGGCCTCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (24 bp):
TAAGAACATGTTTGAGACATGGCA
Found at i:99301713 original size:48 final size:47
Alignment explanation
Indices: 99301657--99301879 Score: 234
Period size: 48 Copynumber: 4.6 Consensus size: 47
99301647 AGACATGGCA
*
99301657 TAAGACCATGTTTGAGACATGGCATCGGCCTCGATATGTGAGCCAGTG
1 TAAGACCATGTTTG-GACATGGCATCGGCCTCGATATGAGAGCCAGTG
* ** **
99301705 TAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGTTAGTG
1 TAAGACCATGTTTGG-ACATGGCATCGGCCTCGATATGAGAGCCAGTG
* * * * *
99301753 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGTG-GGCAGGTG
1 TAAGACCATGT-TTGGACATGGCATCGGCCTCGATATGAGAGCCA-GTG
*
99301801 TAAGACCATGTTTGGAACATGGCATCGACAC-CGATATATGAGAGCCAGTG
1 TAAGACCATGTTTGG-ACATGGCATCGGC-CTCG--ATATGAGAGCCAGTG
*
99301851 TAAGACCATGTTTGGGACATGGTATCGGC
1 TAAGACCATGTTT-GGACATGGCATCGGC
99301880 ATCTTACCCT
Statistics
Matches: 145, Mismatches: 21, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
47 6 0.04
48 98 0.68
49 4 0.03
50 32 0.22
51 5 0.03
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTTTGGACATGGCATCGGCCTCGATATGAGAGCCAGTG
Found at i:99301745 original size:72 final size:72
Alignment explanation
Indices: 99301584--99301729 Score: 206
Period size: 72 Copynumber: 2.0 Consensus size: 72
99301574 ATGAGCTAGT
* *
99301584 ATAAGACCATGTTTG-GAACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGAACATGTTTGA
1 ATAAGACCATGTTTGAG-ACATGGCATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTGA
99301648 GACATGGC
65 GACATGGC
* * * *
99301656 ATAAGACCATGTTTGAGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATGTTTG-G
1 ATAAGACCATGTTTGAGACATGGCATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTGAG
99301720 AACATGGC
66 -ACATGGC
99301728 AT
1 AT
99301730 CGGCATTTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
71 1 0.02
72 64 0.97
73 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (72 bp):
ATAAGACCATGTTTGAGACATGGCATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTGAG
ACATGGC
Found at i:99301809 original size:96 final size:97
Alignment explanation
Indices: 99301657--99301879 Score: 315
Period size: 96 Copynumber: 2.3 Consensus size: 97
99301647 AGACATGGCA
* *
99301657 TAAGACCATGTTTGAGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
* ** **
99301722 CATGGCATCGGCA-TTTATATGAGAGTTAGTG
66 CATGGCATCGACACGATATATGAGAGCCAGTG
* * *
99301753 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGTG-GGCAGGTGTAAGACCATGTTTGGA
1 TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCA-GTGTAAGACCATGTTTGGA
99301817 ACATGGCATCGACACCGATATATGAGAGCCAGTG
65 ACATGGCATCGACA-CGATATATGAGAGCCAGTG
*
99301851 TAAGACCATGTTTGGGACATGGTATCGGC
1 TAAGACCATGTTTGGGACATGGCATCGGC
99301880 ATCTTACCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
95 3 0.03
96 68 0.61
98 41 0.37
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (97 bp):
TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGACACGATATATGAGAGCCAGTG
Found at i:99301977 original size:21 final size:21
Alignment explanation
Indices: 99301948--99301987 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
99301938 CGAGTAATTT
99301948 AAAAATTAT-ATTATGATTGAG
1 AAAAATTATGATTAT-ATTGAG
*
99301969 AAAAGTTATGATTATATTG
1 AAAAATTATGATTATATTG
99301988 CAAGTGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (21 bp):
AAAAATTATGATTATATTGAG
Found at i:99305456 original size:43 final size:42
Alignment explanation
Indices: 99305349--99305521 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 42
99305339 ACATTAGGTT
* * **
99305349 ATCGATAAGTGATTACATGGAAGACCATGTCTGAAACATTGGC
1 ATCGAT-ATTGATTACATGTAAGACCATGTCTGGGACATTGGC
* *
99305392 ATTG-TATTGAGATTACGTGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATT--GATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
99305435 ATCGTTAATTGATTTCATGTAAGACCCTGTCTGGGACAGTGGC
1 ATCGAT-ATTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * *
99305478 ATCGATATGTGATAACATGTAAGACCATATCTGGGATA-TGGC
1 ATCGATAT-TGATTACATGTAAGACCATGTCTGGGACATTGGC
99305520 AT
1 AT
99305522 TGTACGAGTT
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 9 0.08
43 93 0.86
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
ATCGATATTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:99308500 original size:40 final size:40
Alignment explanation
Indices: 99308455--99308621 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
99308445 CGGAATATAA
99308455 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99308495 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99308535 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99308575 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99308614 CCGGATAT
1 CCGGATAT
99308622 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99308605 original size:80 final size:79
Alignment explanation
Indices: 99308455--99308621 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
99308445 CGGAATATAA
* *
99308455 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
99308520 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
99308535 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
99308597 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
99308614 CCGGATAT
1 CCGGATAT
99308622 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:99309470 original size:17 final size:19
Alignment explanation
Indices: 99309447--99309492 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
99309437 AAGAAGCATG
99309447 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
99309465 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
99309483 AATCATGCTC
1 AATCATGCTC
99309493 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:99316520 original size:40 final size:40
Alignment explanation
Indices: 99316475--99316641 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
99316465 CGGAATATAA
99316475 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99316515 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99316555 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99316595 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99316634 CCGGATAT
1 CCGGATAT
99316642 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99316625 original size:80 final size:79
Alignment explanation
Indices: 99316475--99316641 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
99316465 CGGAATATAA
* *
99316475 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
99316540 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
99316555 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
99316617 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
99316634 CCGGATAT
1 CCGGATAT
99316642 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:99317490 original size:17 final size:19
Alignment explanation
Indices: 99317467--99317512 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
99317457 AAGAAGCATG
99317467 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
99317485 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
99317503 AATCATGCTC
1 AATCATGCTC
99317513 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:99319850 original size:20 final size:20
Alignment explanation
Indices: 99319827--99319884 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
99319817 AAAACATGGT
99319827 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
99319847 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
99319867 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
99319885 CTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:99319867 original size:11 final size:11
Alignment explanation
Indices: 99319831--99319884 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
99319821 CATGGTATGT
99319831 ATGATATGCAC
1 ATGATATGCAC
* *
99319842 ATGACATG--T
1 ATGATATGCAC
99319851 ATGATATGCAC
1 ATGATATGCAC
*
99319862 ATGATATG--T
1 ATGATATGCAC
99319871 ATGATATGCAC
1 ATGATATGCAC
99319882 ATG
1 ATG
99319885 CTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:99320015 original size:24 final size:24
Alignment explanation
Indices: 99319936--99320053 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
99319926 GAGGAAGTGA
*
99319936 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
99319960 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
99319983 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
99320006 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
99320030 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
99320054 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.52
24 31 0.36
25 11 0.13
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:99320029 original size:47 final size:46
Alignment explanation
Indices: 99319937--99320032 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 46
99319927 AGGAAGTGAA
*
99319937 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
99319983 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
99320030 AAA
1 AAA
99320033 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 22 0.47
47 25 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:99320287 original size:31 final size:31
Alignment explanation
Indices: 99320252--99320315 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
99320242 CGTTTACAGT
99320252 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
99320283 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
99320314 AA
1 AA
99320316 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:99329995 original size:43 final size:42
Alignment explanation
Indices: 99329947--99330106 Score: 146
Period size: 43 Copynumber: 3.8 Consensus size: 42
99329937 TGTGACAACA
* *
99329947 TGTAAGACCTTGTCTGGGACATTGGCATTGTATTGAGATTACG
1 TGTAAGACCATGTCTAGGACATTGGCATTGTATTG-GATTACG
* *
99329990 TGTAAGACCATGTCTAGGACATTGGCATAGTTAATT-GATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATTG-T-ATTGGATTACG
* * * * *
99330033 TGTAAGACCCTGTCTAGGACAGTGGCATCG-ATATGTGATAACA
1 TGTAAGACCATGTCTAGGACATTGGCATTGTAT-TG-GATTACG
* * *
99330076 TGTAAGACCATATCTGGGATA-TGGCATTGTA
1 TGTAAGACCATGTCTAGGACATTGGCATTGTA
99330107 CTAGTTTATG
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 7 0.07
43 82 0.85
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATTGGCATTGTATTGGATTACG
Found at i:99331574 original size:4 final size:4
Alignment explanation
Indices: 99331565--99331593 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
99331555 AGATGTTAAT
99331565 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
99331594 GAATTGTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:99337043 original size:20 final size:20
Alignment explanation
Indices: 99337018--99337055 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
99337008 GTTTATTCGC
*
99337018 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
99337038 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
99337056 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:99338709 original size:28 final size:28
Alignment explanation
Indices: 99338677--99338734 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
99338667 GCGTAGATCA
99338677 GAAATTACCCCTAAAGAGCAAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
99338705 GAAATTACCCCTAAAGAGCAAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
99338733 GA
1 GA
99338735 TATACCCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.17
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACC
Found at i:99345007 original size:20 final size:20
Alignment explanation
Indices: 99344982--99345019 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
99344972 GTTTATTCGC
*
99344982 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
99345002 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
99345020 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:99346675 original size:28 final size:28
Alignment explanation
Indices: 99346643--99346711 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
99346633 GCGTAGATCA
99346643 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
99346671 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
99346699 CGATA-TACCCCTA
1 CGAAATTACCCCTA
99346712 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:99349975 original size:28 final size:27
Alignment explanation
Indices: 99349929--99349995 Score: 109
Period size: 28 Copynumber: 2.5 Consensus size: 27
99349919 GCGTAGATCA
99349929 CGAAATTACCCTAAAGAGCAAAATTAC
1 CGAAATTACCCTAAAGAGCAAAATTAC
99349956 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTA-CCCTAAAGAGCAAAATTAC
*
99349984 CGATA-TACCCTA
1 CGAAATTACCCTA
99349996 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 5 0.13
27 10 0.26
28 23 0.61
ACGTcount: A:0.45, C:0.25, G:0.10, T:0.19
Consensus pattern (27 bp):
CGAAATTACCCTAAAGAGCAAAATTAC
Found at i:99350620 original size:14 final size:15
Alignment explanation
Indices: 99350603--99350631 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99350593 ATTTGGGTTA
99350603 TTTTATTTTT-TTAT
1 TTTTATTTTTATTAT
99350617 TTTTATTTTTATTAT
1 TTTTATTTTTATTAT
99350632 GCTTAAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTATTAT
Found at i:99356254 original size:20 final size:20
Alignment explanation
Indices: 99356229--99356266 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
99356219 GTTTATTCGC
*
99356229 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
99356249 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
99356267 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:99357925 original size:28 final size:28
Alignment explanation
Indices: 99357893--99357947 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
99357883 GCGTAGATCA
99357893 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
99357921 CGAAATTACCCCTAAAGAGCAAAATTA
1 CGAAATTACCCCTAAAGAGCAAAATTA
99357948 TCGATATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:99358591 original size:9 final size:9
Alignment explanation
Indices: 99358579--99358612 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
99358569 ATTTGGGTTA
99358579 TTTTATTTT
1 TTTTATTTT
99358588 TTTT-TATTT
1 TTTTAT-TTT
99358597 TTTTATTTT
1 TTTTATTTT
99358606 TTTTATT
1 TTTTATT
99358613 ATGCTTAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTATTTT
Found at i:99358597 original size:8 final size:8
Alignment explanation
Indices: 99358576--99358608 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
99358566 TTAATTTGGG
*
99358576 TTATTTTA
1 TTATTTTT
99358584 TT-TTTTT
1 TTATTTTT
99358591 TTATTTTT
1 TTATTTTT
99358599 TTATTTTT
1 TTATTTTT
99358607 TT
1 TT
99358609 TATTATGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:99365578 original size:56 final size:56
Alignment explanation
Indices: 99365512--99365617 Score: 167
Period size: 56 Copynumber: 1.9 Consensus size: 56
99365502 GACCACGACA
* * *
99365512 TCGATATATGTGTGCGAGTAAGACGATGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
* *
99365568 TCGATATATGTGTGCGAGTAAGACCACGTCTAGTATGTTGGCATCGATAT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATAT
99365618 ATGTGGTTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
Found at i:99366183 original size:15 final size:15
Alignment explanation
Indices: 99366162--99366206 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
99366152 TTCAAGTGTA
99366162 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99366177 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99366192 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
99366207 GATTTTCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:99370358 original size:40 final size:40
Alignment explanation
Indices: 99370298--99370519 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
99370288 GAGGATTATA
*
99370298 TCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTGCTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * * *
99370338 TCCAGGTTAAGTCTCGAAGGCATTCGTGCTAGTTGTTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * * *
99370378 TCCGGGTTAAGTCCTGAAGGCAATCGTTCTGGTTGTTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * * *
99370418 TCCGGGTTAAGCCCCAAAGGCATTCGTGCTAGTCGCTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * **
99370458 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * *
99370498 TCCGGGCTAAATCCCAAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
99370520 ATTAGGTTGG
Statistics
Matches: 152, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
Found at i:99370438 original size:80 final size:80
Alignment explanation
Indices: 99370293--99370519 Score: 301
Period size: 80 Copynumber: 2.8 Consensus size: 80
99370283 CAATTGAGGA
* * * * * *
99370293 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTGCTATTTCCAGGTTAAGTCTCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGTCCCAAAGG
*
99370358 CATTCGTGCTAGTTG
66 CATTCGTGCTAGTCG
* * * *
99370373 TTATTTCCGGGTTAAGTCCTGAAGGCAATCGTTCTGGTTGTTATTTCCGGGTTAAGCCCCAAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGTCCCAAAGG
99370438 CATTCGTGCTAGTCG
66 CATTCGTGCTAGTCG
* * ** * *
99370453 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCCGGGCTAAATCCCAAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGTCCCAAAGG
99370518 CA
66 CA
99370520 ATTAGGTTGG
Statistics
Matches: 126, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 126 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (80 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGTCCCAAAGG
CATTCGTGCTAGTCG
Found at i:99370518 original size:120 final size:120
Alignment explanation
Indices: 99370293--99370521 Score: 332
Period size: 120 Copynumber: 1.9 Consensus size: 120
99370283 CAATTGAGGA
* * * *
99370293 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTGCTATTTCCAGGTTAAGTCTCGAAGG
1 TTATATCCGGGTTAAGCCCCAAAGGCATTCGTGCTAGTCGCTATTTCCAGGTTAAGTCCCGAAGG
** * * **
99370358 CATTCGTGCTAGTTGTTATTTCCGGGTTAAGTCCTGAAGGCAATCGTTCTGGTTG
66 CATTCGTGCTAGTTGTTACATCCGGGCTAAATCCCAAAGGCAATCGTTCTGGTTG
* *
99370413 TTATTTCCGGGTTAAGCCCCAAAGGCATTCGTGCTAGTCGCTATTTCCGGGTTAAGTCCCGAAGG
1 TTATATCCGGGTTAAGCCCCAAAGGCATTCGTGCTAGTCGCTATTTCCAGGTTAAGTCCCGAAGG
* *
99370478 CATTTGTGCTGGTTGTTACATCCGGGCTAAATCCCAAAGGCAAT
66 CATTCGTGCTAGTTGTTACATCCGGGCTAAATCCCAAAGGCAAT
99370522 TAGGTTGGAA
Statistics
Matches: 95, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
120 95 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (120 bp):
TTATATCCGGGTTAAGCCCCAAAGGCATTCGTGCTAGTCGCTATTTCCAGGTTAAGTCCCGAAGG
CATTCGTGCTAGTTGTTACATCCGGGCTAAATCCCAAAGGCAATCGTTCTGGTTG
Found at i:99376035 original size:45 final size:42
Alignment explanation
Indices: 99375986--99376084 Score: 110
Period size: 41 Copynumber: 2.3 Consensus size: 42
99375976 GTCTAGTATG
*
99375986 TTGGCATCGATATTTGTTGTTACGAGTAAGAACATGTCTGGGACA
1 TTGGCATCGATATTT-AT-TT-CGAGTAAGAACATGTCTGGGACA
* * * *
99376031 TTGGCATC-TTATTTATTTCGTGTAAGACCCTGTCTGGGACA
1 TTGGCATCGATATTTATTTCGAGTAAGAACATGTCTGGGACA
*
99376072 GTGGCATCGATAT
1 TTGGCATCGATAT
99376085 GTGATTACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
41 27 0.59
42 5 0.11
43 1 0.02
44 5 0.11
45 8 0.17
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
TTGGCATCGATATTTATTTCGAGTAAGAACATGTCTGGGACA
Found at i:99376564 original size:15 final size:15
Alignment explanation
Indices: 99376543--99376587 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
99376533 TTCAAGTATA
99376543 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99376558 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99376573 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
99376588 GATTTTTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:99381629 original size:11 final size:11
Alignment explanation
Indices: 99381593--99381648 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
99381583 CATGGTATGT
99381593 ATGATATGCAC
1 ATGATATGCAC
* *
99381604 ATGACATG--T
1 ATGATATGCAC
99381613 ATGATATGCAC
1 ATGATATGCAC
*
99381624 ATGATATG--T
1 ATGATATGCAC
99381633 ATGATATGCAC
1 ATGATATGCAC
99381644 ATGAT
1 ATGAT
99381649 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:99381648 original size:20 final size:20
Alignment explanation
Indices: 99381582--99381648 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
99381572 GATTTTGAAA
*
99381582 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
99381602 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
99381622 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
99381642 ACATGAT
1 ACATGAT
99381649 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:99381729 original size:23 final size:23
Alignment explanation
Indices: 99381699--99381864 Score: 278
Period size: 23 Copynumber: 7.1 Consensus size: 23
99381689 AGGAAGTGAA
*
99381699 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
99381722 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
99381745 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
99381768 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
99381792 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
99381815 AAAGGGCTTATGCCCGAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
99381838 AAAAGGGCTTTTGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
99381862 AAA
1 AAA
99381865 AGAGGCTAGG
Statistics
Matches: 137, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
23 93 0.68
24 44 0.32
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:99381791 original size:47 final size:46
Alignment explanation
Indices: 99381699--99381864 Score: 278
Period size: 47 Copynumber: 3.6 Consensus size: 46
99381689 AGGAAGTGAA
*
99381699 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
99381745 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
*
99381792 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCGAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
99381838 AAAAGGGCTTTTGCCCTAGTTATTAAA
1 -AAAGGGCTTATGCCCCAGTTATTAAA
99381865 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
46 44 0.39
47 70 0.61
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:99381811 original size:70 final size:70
Alignment explanation
Indices: 99381698--99381864 Score: 298
Period size: 70 Copynumber: 2.4 Consensus size: 70
99381688 GAGGAAGTGA
*
99381698 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
99381763 TTATT
66 TTATT
*
99381768 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCGAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
99381833 TTATT
66 TTATT
* *
99381838 AAAAGGGCTTTTGCCCTAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
99381865 AGAGGCTAGG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 93 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
TTATT
Found at i:99382117 original size:31 final size:31
Alignment explanation
Indices: 99382079--99382142 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
99382069 CGTTTACAGT
*
99382079 AAAGGCTTCGATCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* * **
99382110 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
99382141 AA
1 AA
99382143 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:99383065 original size:21 final size:21
Alignment explanation
Indices: 99383041--99383083 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
99383031 ATGTGATTGA
*
99383041 TATGAATAG-ATGTTAATTATG
1 TATGAAT-GTATGTGAATTATG
*
99383062 TATGTATGTATGTGAATTATG
1 TATGAATGTATGTGAATTATG
99383083 T
1 T
99383084 GTGATTTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
TATGAATGTATGTGAATTATG
Found at i:99387935 original size:43 final size:43
Alignment explanation
Indices: 99387887--99388000 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
99387877 TGTGACAACA
* *
99387887 TGTAAGACCTTGTCTGGGACATTGGCATTG-T-ATTGAGATTACG
1 TGTAAGACCTTGTCTAGGACATTGGCATAGTTAATT--GATTACG
* *
99387930 TGTAAGACCATGTCTAGGACATTGGCATAGTTAATTGATTTCG
1 TGTAAGACCTTGTCTAGGACATTGGCATAGTTAATTGATTACG
*
99387973 TGTAAGACCTTGTCTAGGACAGTGGCAT
1 TGTAAGACCTTGTCTAGGACATTGGCAT
99388001 CGATATATTA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
43 59 0.94
44 1 0.02
45 3 0.05
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCTTGTCTAGGACATTGGCATAGTTAATTGATTACG
Found at i:99388020 original size:43 final size:42
Alignment explanation
Indices: 99387883--99388024 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 42
99387873 AATATGTGAC
* * *
99387883 AACATGTAAGACCTTGTCTGGGACATTGGCATTGTAT-TGAGAT
1 AACATGTAAGACCTTGTCTAGGACATTGGCATAGTATAT--TAT
* * *
99387926 TACGTGTAAGACCATGTCTAGGACATTGGCATAGT-TAATTGAT
1 AACATGTAAGACCTTGTCTAGGACATTGGCATAGTAT-ATT-AT
** * * *
99387969 TTCGTGTAAGACCTTGTCTAGGACAGTGGCATCGATATATTAT
1 AACATGTAAGACCTTGTCTAGGACATTGGCATAG-TATATTAT
99388012 AACATGTAAGACC
1 AACATGTAAGACC
99388025 ATATTTGGGA
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
42 1 0.01
43 74 0.91
44 5 0.06
45 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
AACATGTAAGACCTTGTCTAGGACATTGGCATAGTATATTAT
Found at i:99389514 original size:4 final size:4
Alignment explanation
Indices: 99389505--99389529 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
99389495 AGATGTTAAT
99389505 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
99389530 GAATTGTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:99412453 original size:56 final size:56
Alignment explanation
Indices: 99412387--99412492 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
99412377 GACCACGACA
* *
99412387 TCGATATATGTGTGCGAGTAAGACGACGTTTAGTACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAGTACGTTGGCATCGATATGTGATT
* *
99412443 TCGATATATGTGTGCGAGTAAGACCATGTCTAGTATGTTGGCATCGATAT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAGTACGTTGGCATCGATAT
99412493 ATGAGGTTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTCTAGTACGTTGGCATCGATATGTGATT
Found at i:99413058 original size:15 final size:15
Alignment explanation
Indices: 99413037--99413081 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
99413027 TTCAAGTATA
99413037 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99413052 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99413067 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
99413082 GATTTTCAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:99414731 original size:27 final size:27
Alignment explanation
Indices: 99414617--99414723 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
99414607 TTTAGTTTAC
* *
99414617 TAAAATTATCAAAATACCCT-TAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
* ** *
99414644 TAAAAATACTGAAATTCCCTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
** * *
99414671 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCAAAATACCCTCGATTTG
99414698 TAAAATTACCAAAATACCCTCGATTT
1 TAAAATTACCAAAATACCCTCGATTT
99414724 ATAGAATTTC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
27 64 0.98
28 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:99414742 original size:27 final size:27
Alignment explanation
Indices: 99414712--99414894 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
99414702 ATTACCAAAA
* *
99414712 TACCCTCGATTTATAGAATT-TCCGTTT
1 TACCCTCGATTTACAGAATTAT-TGTTT
* * *
99414739 TACCCCCGATTTACATAATTATTATTT
1 TACCCTCGATTTACAGAATTATTGTTT
* *
99414766 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATTGTTT
* *
99414793 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTATTGTTT
*
99414820 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTATTGTTT
* *
99414847 TACCCTTGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTATTGTTT
*
99414874 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
99414895 CTAAAATACC
Statistics
Matches: 136, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 135 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATTGTTT
Found at i:99414775 original size:81 final size:81
Alignment explanation
Indices: 99414685--99414867 Score: 213
Period size: 81 Copynumber: 2.3 Consensus size: 81
99414675 ATTACTGAAA
* ** *
99414685 TACCTTCGACTTGTAAAATTACCAAAATACCCTCGATTTATAGAATTTCCGTTTTACCCCCGATT
1 TACCCTCGACTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCCCGATT
*
99414750 TACATAATTATTATTT
66 TACAGAATTATTATTT
* * **** * *
99414766 TACCCTCGACTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGACTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCCCGATT
* *
99414831 TATAGAATTATTGTTT
66 TACAGAATTATTATTT
* *
99414847 TACCCTTGATTTACAAAATTA
1 TACCCTCGACTTACAAAATTA
99414868 TTGTTTTACC
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGACTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCCCGATT
TACAGAATTATTATTT
Found at i:99414868 original size:81 final size:81
Alignment explanation
Indices: 99414712--99414896 Score: 262
Period size: 81 Copynumber: 2.3 Consensus size: 81
99414702 ATTACCAAAA
* * *
99414712 TACCCTCGATTTATAGAATTTCCGTTTTACCCCCGATTTACATAATTATTATTTTACCCTCGACT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCCCGATTTACAGAATTATTATTTTACCCTCGACT
*
99414777 TACAGAATTATCGTTT
66 TACAAAATTATCGTTT
* * * * *
99414793 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCCCGATTTACAGAATTATTATTTTACCCTCGACT
*
99414858 TACAAAATTATTGTTT
66 TACAAAATTATCGTTT
* *
99414874 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
99414897 AAAATACCCT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCCCGATTTACAGAATTATTATTTTACCCTCGACT
TACAAAATTATCGTTT
Found at i:99414919 original size:54 final size:54
Alignment explanation
Indices: 99414793--99414975 Score: 134
Period size: 54 Copynumber: 3.4 Consensus size: 54
99414783 ATTATCGTTT
* * * * * * ****
99414793 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTATTGTTT
1 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
*
99414847 TACCCTTGATTTACAAAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
* ** ***** * ** *
99414901 TACCCTTGGTTTGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
99414954 TACCCTTAATTTATAAAATTAC
1 TACCCTTGATTTACAAAATTAC
99414976 CAAAATACCC
Statistics
Matches: 102, Mismatches: 27, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
53 34 0.33
54 68 0.67
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:99414921 original size:81 final size:81
Alignment explanation
Indices: 99414739--99414921 Score: 204
Period size: 81 Copynumber: 2.3 Consensus size: 81
99414729 ATTTCCGTTT
* * * *
99414739 TACCCCCGATTTACATAATTATTATTTTACCCTCGACTTACAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTATTATTTTACCCTCGACTTACAAAATTATCGTTTTACCCTCGATT
* * ****
99414804 TATAGAATTACTGTTT
66 TACAAAATTACTAAAA
* * * * *
99414820 TACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAAAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTATTATTTTACCCTCGACTTACAAAATTATCGTTTTACCCTCGATT
99414885 TACAAAATTACTAAAA
66 TACAAAATTACTAAAA
* * *
99414901 TACCCTTGGTTTGTAAAATTA
1 TACCCTCGATTTATAAAATTA
99414922 CCAAAATACC
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTATTATTTTACCCTCGACTTACAAAATTATCGTTTTACCCTCGATT
TACAAAATTACTAAAA
Found at i:99415075 original size:27 final size:27
Alignment explanation
Indices: 99414847--99415071 Score: 179
Period size: 27 Copynumber: 8.3 Consensus size: 27
99414837 ATTATTGTTT
* ****
99414847 TACCCTTGATTTACAAAATTATTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
99414874 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
99414901 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
99414928 TACCCTAG-TTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
99414954 TACCCTTAATTTATAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
99414981 TACCCCTGATTTACAAAGTTA-TAGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
99415008 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
99415037 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
99415064 TACCCTTG
1 TACCCTTG
99415072 GTTTGTAGAT
Statistics
Matches: 165, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
26 25 0.15
27 113 0.68
28 7 0.04
29 20 0.12
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:99415166 original size:26 final size:27
Alignment explanation
Indices: 99415137--99415205 Score: 97
Period size: 26 Copynumber: 2.6 Consensus size: 27
99415127 TAGGTAAAAA
99415137 GACCGTAAAGCCCCTGTAGGG-AAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
99415163 GACCGTAAAGCCCCTGTAGGGTAATGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
99415190 GATCGTAATA-CCCCTG
1 GACCGTAA-AGCCCCTG
99415206 GATGGTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
26 21 0.54
27 17 0.44
28 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:99416304 original size:42 final size:44
Alignment explanation
Indices: 99416213--99416306 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 44
99416203 GCAGTCTCCC
* * *
99416213 AAATGGGCTTGCATACATTCATTGGTATATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
99416257 AAATGGGCTTGCATACATCCATT-G-ACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
99416299 AAATGGGC
1 AAATGGGC
99416307 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 24 0.51
43 1 0.02
44 22 0.47
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (44 bp):
AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
Found at i:99416365 original size:31 final size:31
Alignment explanation
Indices: 99416330--99416408 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
99416320 CGTTTACAGT
99416330 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * * *
99416361 AAAGGTTTTGGCGCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
99416392 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
99416409 ATATGTCAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:99425038 original size:15 final size:15
Alignment explanation
Indices: 99425017--99425061 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
99425007 TTCAAGTATA
99425017 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99425032 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
99425047 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
99425062 GATTTTCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:99427673 original size:42 final size:42
Alignment explanation
Indices: 99427627--99427723 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
99427617 CTGAGACTAT
*
99427627 GTGTAAGACCATATCT-AGGATATGACATCAATATCAGACTTC
1 GTGTAAGACCATATCTGA-GATATGACATCAATATCAAACTTC
* * * * *
99427669 GTGTAAGACCATATCTGAGATATGGCATCGATATGAAATTTT
1 GTGTAAGACCATATCTGAGATATGACATCAATATCAAACTTC
99427711 GTGTAAGACCATA
1 GTGTAAGACCATA
99427724 GCTGGTGTGA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGACATCAATATCAAACTTC
Found at i:99430335 original size:48 final size:48
Alignment explanation
Indices: 99430259--99430494 Score: 427
Period size: 48 Copynumber: 4.9 Consensus size: 48
99430249 AGAAAAATAT
*
99430259 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
99430307 ATATGTATATGTGGTAAAGCCGAGTGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
99430355 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
99430403 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
99430451 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
99430495 GATGTGTGTA
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:99430735 original size:37 final size:37
Alignment explanation
Indices: 99430638--99430725 Score: 158
Period size: 37 Copynumber: 2.4 Consensus size: 37
99430628 GGAAATATAT
99430638 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
99430675 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
99430712 TCCGGGTGAGACCC
1 TCCGGGTAAGACCC
99430726 ACTAACTACG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Done.