Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 32 of 425
Found at i:8113490 original size:24 final size:24
Alignment explanation
Indices: 8113460--8113525 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
8113450 CTTATGAAAG
*
8113460 TCCCGTTATTAGCTCTTTCGAGCT
1 TCCCGTTATTAGCTCTTGCGAGCT
* * *
8113484 TCTCGTTATATGGTTCTTGCGAGCT
1 TCCCGTTAT-TAGCTCTTGCGAGCT
*
8113509 TCCCGTTAATAGCTCTT
1 TCCCGTTATTAGCTCTT
8113526 CGGAGTATCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
24 14 0.42
25 19 0.58
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.42
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTTGCGAGCT
Found at i:8114142 original size:26 final size:26
Alignment explanation
Indices: 8114111--8114162 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8114101 ATATGTTAGG
8114111 TTACTGATTAATTTGATTTGGATGTA
1 TTACTGATTAATTTGATTTGGATGTA
8114137 TTACTGATTAATTTGATTTGGATGTA
1 TTACTGATTAATTTGATTTGGATGTA
8114163 CTTTGTATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.19, T:0.50
Consensus pattern (26 bp):
TTACTGATTAATTTGATTTGGATGTA
Found at i:8138471 original size:12 final size:12
Alignment explanation
Indices: 8138437--8138462 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8138427 TTCCCCAAGC
8138437 CTCTAACCACCG
1 CTCTAACCACCG
8138449 CTCTAACCACCG
1 CTCTAACCACCG
8138461 CT
1 CT
8138463 TTAGCCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.50, G:0.08, T:0.19
Consensus pattern (12 bp):
CTCTAACCACCG
Found at i:8142564 original size:21 final size:21
Alignment explanation
Indices: 8142538--8142579 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8142528 GTGTTTAAGT
8142538 TAGAATTGATCTAGCAGTCGC
1 TAGAATTGATCTAGCAGTCGC
8142559 TAGAATTGATCTAGCAGTCGC
1 TAGAATTGATCTAGCAGTCGC
8142580 CTCCATTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (21 bp):
TAGAATTGATCTAGCAGTCGC
Found at i:8154124 original size:35 final size:34
Alignment explanation
Indices: 8154103--8154172 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 34
8154093 AAATTGGCGA
*
8154103 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
1 TAGAAAGTTCAACATTATTGT-GAAGAAGCGAGAG
*
8154138 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
1 TAGAAAGTTCAACATTATTGT-GAAGAAGCGAGAG
8154173 ACGAGTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (34 bp):
TAGAAAGTTCAACATTATTGTGAAGAAGCGAGAG
Found at i:8155716 original size:12 final size:12
Alignment explanation
Indices: 8155699--8155733 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
8155689 GTTTATTTTT
8155699 ATTTATTAAATA
1 ATTTATTAAATA
8155711 ATTTATTAAATA
1 ATTTATTAAATA
*
8155723 ATTTTTTAAAT
1 ATTTATTAAAT
8155734 TTATTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTATTAAATA
Found at i:8160299 original size:46 final size:47
Alignment explanation
Indices: 8160249--8160392 Score: 206
Period size: 46 Copynumber: 3.1 Consensus size: 47
8160239 TCTCTCAATT
* *
8160249 ATGGTCTGACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCATGTCAAGTTGCCATGGTATCTTTCAACC
*
8160295 ATGGTCTTATTC-TTTTCATGTCAAGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCATGTCAAGTTGCCATGGTATCTTTCAACC
* * *
8160341 ATGGTCTTACACA--TTCATATCAGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCATGTCAAGTTGCCATGGTATCTTTCAACC
8160386 ATGGTCT
1 ATGGTCT
8160393 AACACACAGG
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
45 42 0.47
46 47 0.53
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (47 bp):
ATGGTCTTACTCATTTTCATGTCAAGTTGCCATGGTATCTTTCAACC
Found at i:8160412 original size:38 final size:38
Alignment explanation
Indices: 8160361--8160513 Score: 172
Period size: 38 Copynumber: 4.0 Consensus size: 38
8160351 ACATTCATAT
*
8160361 CAGGTTGCCATGGTATCTTTCAACCATGGTCTAACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
* * *
8160399 CAGGTTGCCATGGTATCCATGGTCTTACACA---T-TT-CATA
1 CAGGTTGCCATGGTAT-C-T-TTC-AAC-CATGGTCTTACACA
8160437 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
8160476 CAGGTTGCCATGGTATCTTTGAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
8160514 TTTCATATCA
Statistics
Matches: 96, Mismatches: 8, Indels: 22
0.76 0.06 0.17
Matches are distributed among these distances:
34 2 0.02
35 2 0.02
36 2 0.02
37 2 0.02
38 59 0.61
39 21 0.22
40 2 0.02
41 2 0.02
42 2 0.02
43 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:8160447 original size:77 final size:79
Alignment explanation
Indices: 8160338--8160524 Score: 299
Period size: 77 Copynumber: 2.3 Consensus size: 79
8160328 GTATCTTTCA
8160338 ACCATGGTCTTACACA-TTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTAACACACAG
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTAACACACAG
8160402 GTTGCCATGGTA-T
66 GTTGCCATGGTATT
*
8160415 -CCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTAACACACAG
8160479 GTTGCCATGGTATCTTT
66 GTTGCCATGGTA---TT
8160496 GAACCATGGTCTTACACATTTCATATCAG
1 --ACCATGGTCTTACACATTTCATATCAG
8160525 AGAGCACACT
Statistics
Matches: 101, Mismatches: 1, Indels: 9
0.91 0.01 0.08
Matches are distributed among these distances:
76 15 0.15
77 59 0.58
81 1 0.01
84 26 0.26
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (79 bp):
ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTAACACACAG
GTTGCCATGGTATT
Found at i:8164037 original size:27 final size:28
Alignment explanation
Indices: 8163997--8164136 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
8163987 AGCATGGCTG
* * *
8163997 CCAGA-ACAAATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8164023 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
8164051 CCAGA-ACAGATATATGTGGTAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
8164078 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
8164105 CCAGATA-AGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8164132 CCAGA
1 CCAGA
8164137 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
26 5 0.05
27 80 0.78
28 17 0.17
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:8165793 original size:26 final size:26
Alignment explanation
Indices: 8165755--8165838 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
8165745 CATGAAATTC
* *
8165755 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
8165781 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
8165807 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
8165833 TTATCA
1 TTATCA
8165839 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:8167441 original size:9 final size:9
Alignment explanation
Indices: 8167427--8167453 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8167417 CAGAGAGTAC
8167427 GAATGTGCT
1 GAATGTGCT
8167436 GAATGTGCT
1 GAATGTGCT
8167445 GAATGTGCT
1 GAATGTGCT
8167454 AATAATCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.33
Consensus pattern (9 bp):
GAATGTGCT
Found at i:8168465 original size:23 final size:25
Alignment explanation
Indices: 8168439--8168485 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8168429 TATCATTCAT
*
8168439 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
8168462 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
8168486 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:8168810 original size:46 final size:46
Alignment explanation
Indices: 8168746--8169010 Score: 316
Period size: 46 Copynumber: 6.0 Consensus size: 46
8168736 TTTAATGTGA
* * * * * * *
8168746 TGCCATAGTGTCTCTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
8168792 TGCCATGGTATCTTTCAACCATGATCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
8168838 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8168884 TGCCATGGTATCTTTC-ACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
8168929 TGCCATGGCATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8168967 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
8169011 AGAGCACACT
Statistics
Matches: 191, Mismatches: 18, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
38 32 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 48 0.25
46 102 0.53
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:8168864 original size:92 final size:91
Alignment explanation
Indices: 8168746--8169009 Score: 294
Period size: 91 Copynumber: 3.0 Consensus size: 91
8168736 TTTAATGTGA
* * * * * * * *
8168746 TGCCATAGTGTCTCTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGTTGCCATGGTATCTTTC-A
** * *
8168810 CCATGATCTTATTCTTTTCATGTCACGT
64 CCATGATCTTACACATTTCATATCACGT
8168838 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCACC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCACC
* *
8168903 ATGGTCTTACACATTTCATATCAGGT
66 ATGATCTTACACATTTCATATCACGT
*
8168929 TGCCATGGCATCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTC-AC
*
8168986 CATGGTCTTACACATTTCATATCA
65 CATGATCTTACACATTTCATATCA
8169010 GAGAGCACAC
Statistics
Matches: 155, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
83 21 0.14
84 27 0.17
86 1 0.01
89 3 0.02
91 53 0.34
92 50 0.32
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCACC
ATGATCTTACACATTTCATATCACGT
Found at i:8168980 original size:38 final size:38
Alignment explanation
Indices: 8168924--8168999 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
8168914 CATTTCATAT
8168924 CAGGTTGCCATGGCATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGCATCTTTCAACCATGGTCTTACACA
*
8168962 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGCATCTTTCAACCATGGTCTTACACA
8169000 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (38 bp):
CAGGTTGCCATGGCATCTTTCAACCATGGTCTTACACA
Found at i:8175852 original size:5 final size:5
Alignment explanation
Indices: 8175842--8175869 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8175832 CTACAGTGTG
8175842 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
8175870 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:8178149 original size:40 final size:40
Alignment explanation
Indices: 8178093--8178219 Score: 155
Period size: 41 Copynumber: 3.1 Consensus size: 40
8178083 GCAAAAATTG
* * *
8178093 TAAAACACAAAGCAATAGCGGCGTTTTTATTAACACGCTGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTTGTTAACACGCCGC
8178134 TAAAAACAGAGCAATAGCGGCGTTTTTTGTTAACACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTTGTTAACACGCCGC
* * * * * *
8178175 TAAAAATAGAGTAATAGTGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTTGTTAACACGCCGC
8178215 TAAAA
1 TAAAA
8178220 GTCATATAAC
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
40 36 0.47
41 40 0.53
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTTGTTAACACGCCGC
Found at i:8179138 original size:8 final size:8
Alignment explanation
Indices: 8179127--8179195 Score: 87
Period size: 7 Copynumber: 9.4 Consensus size: 8
8179117 ACTCAAAAAA
8179127 TAAAAATT
1 TAAAAATT
8179135 TAAAAATT
1 TAAAAATT
8179143 T-AAAATT
1 TAAAAATT
8179150 T-AAAATT
1 TAAAAATT
8179157 TAAAAA--
1 TAAAAATT
8179163 TAAAAA-T
1 TAAAAATT
*
8179170 AAAAAATT
1 TAAAAATT
8179178 TAAAAATT
1 TAAAAATT
8179186 T-AAAATT
1 TAAAAATT
8179193 TAA
1 TAA
8179196 TATTTTAGTC
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
6 6 0.11
7 26 0.47
8 23 0.42
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
TAAAAATT
Found at i:8179184 original size:36 final size:36
Alignment explanation
Indices: 8179122--8179195 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
8179112 AATAAACTCA
*
8179122 AAAAATAAAAATTTAAAAATTTAAAATTTAAAATTT
1 AAAAATAAAAATTAAAAAATTTAAAATTTAAAATTT
8179158 AAAAATAAAAA-TAAAAAATTTAAAAATTTAAAATTT
1 AAAAATAAAAATTAAAAAATTT-AAAATTTAAAATTT
8179194 AA
1 AA
8179196 TATTTTAGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 9 0.25
36 27 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (36 bp):
AAAAATAAAAATTAAAAAATTTAAAATTTAAAATTT
Found at i:8179202 original size:15 final size:15
Alignment explanation
Indices: 8179129--8179195 Score: 93
Period size: 15 Copynumber: 4.6 Consensus size: 15
8179119 TCAAAAAATA
8179129 AAAATTTAAAAATTT
1 AAAATTTAAAAATTT
8179144 AAAATTT-AAAATTT
1 AAAATTTAAAAATTT
* **
8179158 AAAA-ATAAAAATAA
1 AAAATTTAAAAATTT
8179172 AAAATTTAAAAATTT
1 AAAATTTAAAAATTT
8179187 AAAATTTAA
1 AAAATTTAA
8179196 TATTTTAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
13 1 0.02
14 20 0.45
15 23 0.52
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAATTTAAAAATTT
Found at i:8179338 original size:40 final size:41
Alignment explanation
Indices: 8179294--8179378 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 41
8179284 AAAAAAATTT
*
8179294 AAAATT-AATCAATAGTGGCG-TTTTAA-GTAAAACGCCACAA
1 AAAATTGAAT-AATAATGGCGTTTTTAATG-AAAACGCCACAA
* * *
8179334 AAAATTGAGTTATAATGGCGTTTTTAATGAAAACGCCGCAA
1 AAAATTGAATAATAATGGCGTTTTTAATGAAAACGCCACAA
8179375 AAAA
1 AAAA
8179379 AAATTACCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
40 14 0.37
41 23 0.61
42 1 0.03
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (41 bp):
AAAATTGAATAATAATGGCGTTTTTAATGAAAACGCCACAA
Found at i:8185433 original size:19 final size:19
Alignment explanation
Indices: 8185411--8185451 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8185401 TTTATTGATA
8185411 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
8185429 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
8185448 TTTT
1 TTTT
8185452 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:8185463 original size:19 final size:20
Alignment explanation
Indices: 8185440--8185486 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
8185430 TTTTATTATT
8185440 TATTTTAGTTTTGATTCTAA
1 TATTTTAGTTTTGATTCTAA
* *
8185460 -ATTTTTA-TTTTTATTTTAA
1 TA-TTTTAGTTTTGATTCTAA
8185479 TATTTTAG
1 TATTTTAG
8185487 ATAATTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (20 bp):
TATTTTAGTTTTGATTCTAA
Found at i:8185471 original size:20 final size:20
Alignment explanation
Indices: 8185442--8185484 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8185432 TTATTATTTA
8185442 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTT-ATTCTAATAT
* *
8185462 TTTTATTTTTATTTTAATAT
1 TTTTAGTTTTATTCTAATAT
8185482 TTT
1 TTT
8185485 AGATAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTAGTTTTATTCTAATAT
Found at i:8192150 original size:38 final size:38
Alignment explanation
Indices: 8192092--8192164 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
8192082 TAACCGCTTT
*
8192092 AATTTGTTTTACTGTCTATGTTTAATCTTATTTAGGTA
1 AATTTATTTTACTGTCTATGTTTAATCTTATTTAGGTA
* *
8192130 AATTTATTTTATTGTTTATGTTTAATCTTATTTAG
1 AATTTATTTTACTGTCTATGTTTAATCTTATTTAG
8192165 ATAAGGAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (38 bp):
AATTTATTTTACTGTCTATGTTTAATCTTATTTAGGTA
Found at i:8193639 original size:20 final size:20
Alignment explanation
Indices: 8193616--8193657 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8193606 TAAAAAAATT
8193616 AAATAT-AAATAAAAATTATG
1 AAATATAAAAT-AAAATTATG
*
8193636 AAATTTAAAATAAAATTATG
1 AAATATAAAATAAAATTATG
8193656 AA
1 AA
8193658 TGTAACACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
AAATATAAAATAAAATTATG
Found at i:8197732 original size:41 final size:41
Alignment explanation
Indices: 8197663--8197834 Score: 188
Period size: 41 Copynumber: 4.2 Consensus size: 41
8197653 TCCAAAATGT
* * *
8197663 CGCT-AAAAATAGAGCATTAGCGGTGCTTTTCGTAAAACGC
1 CGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGC
* *
8197703 CGCTAAAAAACGGAGCATTAGAGGCGCTTTTGGTAAAACGC
1 CGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGC
** *
8197744 CGCTAAAACTCAGAGCATTAGCGGCGATTTTGGTAAAACGC
1 CGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGC
* * *
8197785 CGCT-AAAAACAGGATCAATAGTGGCG-TTTGTGGTCAAAACGC
1 CGCTAAAAAACA-GAGCATTAGCGGCGCTTT-TGGT-AAAACGC
*
8197827 CACTAAAA
1 CGCTAAAA
8197835 GTCTCACATA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 12 0.11
41 86 0.77
42 10 0.09
43 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (41 bp):
CGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGC
Found at i:8197780 original size:82 final size:82
Alignment explanation
Indices: 8197625--8197834 Score: 225
Period size: 82 Copynumber: 2.6 Consensus size: 82
8197615 GCAAAAATTG
* * * * *
8197625 TAAAACACA-GAGCAATAGCGGCGTTT-T-ATCCAAAATGTCGCTAAAAATAGAGCATTAGCGGT
1 TAAAA-ACAGGAGCAATAGAGGCGTTTGTGGT-CAAAACGCCGCTAAAAATAGAGCATTAGCGGC
*
8197687 GCTTTTCGTAAAACGCCGC
64 GATTTTCGTAAAACGCCGC
* *
8197706 TAAAAA-ACGGAGCATTAGAGGCGCTTT-TGGT-AAAACGCCGCTAAAACTCAGAGCATTAGCGG
1 TAAAAACA-GGAGCAATAGAGGCG-TTTGTGGTCAAAACGCCGCTAAAAAT-AGAGCATTAGCGG
*
8197768 CGATTTTGGTAAAACGCCGC
63 CGATTTTCGTAAAACGCCGC
* * *
8197788 TAAAAACAGGATCAATAGTGGCGTTTGTGGTCAAAACGCCACTAAAA
1 TAAAAACAGGAGCAATAGAGGCGTTTGTGGTCAAAACGCCGCTAAAA
8197835 GTCTCACATA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 34 0.31
82 56 0.52
83 16 0.15
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (82 bp):
TAAAAACAGGAGCAATAGAGGCGTTTGTGGTCAAAACGCCGCTAAAAATAGAGCATTAGCGGCGA
TTTTCGTAAAACGCCGC
Found at i:8197946 original size:37 final size:37
Alignment explanation
Indices: 8197874--8197947 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
8197864 CTCAAAAAAT
* *
8197874 CATAAACACTAATCTATAACCCCTAAAACAGTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
* *
8197911 CATAAACACTAAACTATTACCCCTAAAACCCTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
8197948 AGTTTATGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.32, G:0.01, T:0.19
Consensus pattern (37 bp):
CATAAACACTAAACTATAACCCCTAAAACACTAAACC
Found at i:8198445 original size:29 final size:28
Alignment explanation
Indices: 8198392--8198470 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
8198382 GTTTTATGGC
*
8198392 TTAGGGTTTGGGGTTTAGGGTTTAAGAT
1 TTAGGGTTAGGGGTTTAGGGTTTAAGAT
*
8198420 TTAGGTGTTAGGGGTTTTAGGG-TTAAGGGAC
1 TTAGG-GTTAGGGG-TTTAGGGTTTAA--GAT
*
8198451 AT-GGGTTAGGGGTTTAGGGT
1 TTAGGGTTAGGGGTTTAGGGT
8198471 AATTAGTGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
28 12 0.28
29 19 0.44
30 9 0.21
31 3 0.07
ACGTcount: A:0.18, C:0.01, G:0.43, T:0.38
Consensus pattern (28 bp):
TTAGGGTTAGGGGTTTAGGGTTTAAGAT
Found at i:8198470 original size:14 final size:14
Alignment explanation
Indices: 8198392--8198470 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
8198382 GTTTTATGGC
*
8198392 TTAGGGTTTGGGGT
1 TTAGGGTTAGGGGT
* *
8198406 TTAGGGTTTA-AGAT
1 TTAGGG-TTAGGGGT
8198420 TTAGGTGTTAGGGGTT
1 TTAGG-GTTAGGGG-T
*
8198436 TTAGGGTTAAGGG-
1 TTAGGGTTAGGGGT
**
8198449 ACATGGGTTAGGGGT
1 TTA-GGGTTAGGGGT
8198464 TTAGGGT
1 TTAGGGT
8198471 AATTAGTGTG
Statistics
Matches: 48, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
13 1 0.02
14 29 0.60
15 12 0.25
16 6 0.12
ACGTcount: A:0.18, C:0.01, G:0.43, T:0.38
Consensus pattern (14 bp):
TTAGGGTTAGGGGT
Found at i:8198598 original size:17 final size:16
Alignment explanation
Indices: 8198572--8198641 Score: 61
Period size: 16 Copynumber: 4.2 Consensus size: 16
8198562 AATCTATATA
8198572 TTAAATAATTTCAAATT
1 TTAAA-AATTTCAAATT
*
8198589 TTAAAGAA-TTAAAATT
1 TTAAA-AATTTCAAATT
*
8198605 TTAAAAAATTTTCAAGTT
1 TT-AAAAA-TTTCAAATT
* *
8198623 TTCAAATTTTCAAATT
1 TTAAAAATTTCAAATT
8198639 TTA
1 TTA
8198642 TGTAATTCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
16 21 0.50
17 13 0.31
18 8 0.19
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (16 bp):
TTAAAAATTTCAAATT
Found at i:8198787 original size:18 final size:17
Alignment explanation
Indices: 8198750--8198784 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
8198740 TATATAAGTG
8198750 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
8198767 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
8198783 AT
1 AT
8198785 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:8199137 original size:97 final size:98
Alignment explanation
Indices: 8198971--8199164 Score: 320
Period size: 97 Copynumber: 2.0 Consensus size: 98
8198961 TGCGTTTTTA
* * *
8198971 GCGGCGCTAGGTTATAAACGCCGCTAAAGTTGATTTCGGTTAAAACAAAAATGACGTCATTTTGT
1 GCGGCGCTAGGTTATAAACGCCGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTAT
*
8199036 TATA-TATTAGTGGCGTTTTGGGGCTAAACGCT
66 TATATTATTAGTGGCGTTTTGAGGCTAAACGCT
*
8199068 GCGGCGCTAAGG-TATAAACGCCGCTAAAGGTGATTTCGGTTAAAACAAAAACGGCGTCATTTTA
1 GCGGCGCT-AGGTTATAAACGCCGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTA
8199132 TTATATTATTAGTGGCGTTTTGAGGCTAAACGC
65 TTATATTATTAGTGGCGTTTTGAGGCTAAACGC
8199165 CACAATAGGT
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
97 61 0.68
98 29 0.32
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (98 bp):
GCGGCGCTAGGTTATAAACGCCGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTAT
TATATTATTAGTGGCGTTTTGAGGCTAAACGCT
Found at i:8201584 original size:20 final size:20
Alignment explanation
Indices: 8201554--8201600 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8201544 TGGTTGTGTT
8201554 AATAA-TAATTTAAATATAA
1 AATAAGTAATTTAAATATAA
* *
8201573 AATAAGTAATTTTAATATTA
1 AATAAGTAATTTAAATATAA
*
8201593 AATGAGTA
1 AATAAGTA
8201601 TTGAATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
AATAAGTAATTTAAATATAA
Found at i:8202287 original size:43 final size:43
Alignment explanation
Indices: 8202226--8202445 Score: 368
Period size: 43 Copynumber: 5.0 Consensus size: 43
8202216 ATCTTAATGT
* *
8202226 TAAATATATATCATATAATAATTTACAAAACTAACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
8202269 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
8202312 TAAATATATATCATATAATAACTTACATAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
8202355 TAAATATATATCATATAATAACTTACAAGACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
8202398 TAAATAATATATATCATACAATAACTTACAAAACTTACATAATACA
1 T--A-AATATATATCATATAATAACTTACAAAACTTACATAATACA
8202444 TA
1 TA
8202446 CCTTATATAA
Statistics
Matches: 167, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
43 125 0.75
44 1 0.01
45 1 0.01
46 40 0.24
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (43 bp):
TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
Found at i:8202341 original size:9 final size:9
Alignment explanation
Indices: 8202329--8202505 Score: 59
Period size: 9 Copynumber: 20.0 Consensus size: 9
8202319 ATATCATATA
8202329 ATAACTTAC
1 ATAACTTAC
8202338 ATAACTTAC
1 ATAACTTAC
8202347 ATAA--TAC
1 ATAACTTAC
* *
8202354 ATAA-ATAT
1 ATAACTTAC
*
8202362 ATATCATATA-
1 ATAAC-T-TAC
8202372 ATAACTTAC
1 ATAACTTAC
8202381 A-AGACTTAC
1 ATA-ACTTAC
8202390 ATAA--TAC
1 ATAACTTAC
* *
8202397 ATAAATAATAT
1 ATAACT--TAC
* *
8202408 ATATCATAC
1 ATAACTTAC
8202417 AATAACTTAC
1 -ATAACTTAC
*
8202427 AAAACTTAC
1 ATAACTTAC
8202436 ATAA--TAC
1 ATAACTTAC
* *
8202443 ATACCTTAT
1 ATAACTTAC
* *
8202452 ATAAATT-T
1 ATAACTTAC
* *
8202460 ATATCATATC
1 ATAACTTA-C
*
8202470 ATAACTTGC
1 ATAACTTAC
*
8202479 ATAACATAC
1 ATAACTTAC
*
8202488 AAAACTTAC
1 ATAACTTAC
*
8202497 TTAACTTAC
1 ATAACTTAC
8202506 GTAATACATA
Statistics
Matches: 122, Mismatches: 30, Indels: 32
0.66 0.16 0.17
Matches are distributed among these distances:
7 20 0.16
8 13 0.11
9 65 0.53
10 17 0.14
11 7 0.06
ACGTcount: A:0.49, C:0.17, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:8202362 original size:34 final size:34
Alignment explanation
Indices: 8202297--8202362 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
8202287 TAACTTACAA
* *
8202297 AACTTACATAATACATAAATATATATCATATAAT
1 AACTTACATAATACATAAATACATATAATATAAT
8202331 AACTTACATAACTTACAT-AATACATA-AATATA
1 AACTTACATAA--TACATAAATACATATAATATA
8202363 TATCATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 16 0.57
35 7 0.25
36 5 0.18
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (34 bp):
AACTTACATAATACATAAATACATATAATATAAT
Found at i:8207413 original size:18 final size:18
Alignment explanation
Indices: 8207386--8207420 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8207376 TTCTTTCAAA
8207386 TATTAATAAT-TTTTTAT
1 TATTAATAATATTTTTAT
8207403 TATTAAATAATATTTTTA
1 TATT-AATAATATTTTTA
8207421 CTACTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTAATAATATTTTTAT
Found at i:8208034 original size:21 final size:21
Alignment explanation
Indices: 8208007--8208054 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
8207997 ACTTAGAGCG
*
8208007 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGAGAGAGAGGCA
* *
8208028 GCGGCAGCAGCGAGAGAGGCA
1 GAGGCAGCAGAGAGAGAGGCA
8208049 GAGGCA
1 GAGGCA
8208055 AAAGCGATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.50, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGAGAGAGAGGCA
Found at i:8208060 original size:21 final size:21
Alignment explanation
Indices: 8208022--8208061 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8208012 AGCAGAGAGG
* **
8208022 GAGGCAGCGGCAGCAGCGAGA
1 GAGGCAGAGGCAAAAGCGAGA
8208043 GAGGCAGAGGCAAAAGCGA
1 GAGGCAGAGGCAAAAGCGA
8208062 TGGTAGCAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.20, G:0.45, T:0.00
Consensus pattern (21 bp):
GAGGCAGAGGCAAAAGCGAGA
Found at i:8209995 original size:3 final size:3
Alignment explanation
Indices: 8209987--8210022 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8209977 AGGGCTAAAT
*
8209987 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8210023 AATAACTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8212037 original size:14 final size:14
Alignment explanation
Indices: 8212018--8212055 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
8212008 TGTTTCACAG
*
8212018 AAAATAATTTTTGA
1 AAAATAATTTTTAA
8212032 AAAATAATTTTTAA
1 AAAATAATTTTTAA
8212046 AAAATAATTT
1 AAAATAATTT
8212056 ATTTTTTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:8212540 original size:15 final size:15
Alignment explanation
Indices: 8212520--8212571 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
8212510 GCTACAAAAC
8212520 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
8212535 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
8212554 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
8212569 ATT
1 ATT
8212572 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:8212691 original size:22 final size:23
Alignment explanation
Indices: 8212665--8212730 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
8212655 TATTAAATAG
8212665 TTTATTAAAATAATAATTTA-TA
1 TTTATTAAAATAATAATTTATTA
* *
8212687 TTTATTATATTAATAATTTATTA
1 TTTATTAAAATAATAATTTATTA
*
8212710 TATGATTAAATATAAATAATT
1 T-TTATTAAA-AT-AATAATT
8212731 AAATATCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 18 0.51
23 3 0.09
24 6 0.17
25 1 0.03
26 7 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTTATTAAAATAATAATTTATTA
Found at i:8218923 original size:40 final size:40
Alignment explanation
Indices: 8218879--8218961 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 40
8218869 TTAAATAATC
8218879 AAATACATTTAAAACAAAAATTAAAACAAGAAACAAA-TAA
1 AAATACA-TTAAAACAAAAATTAAAACAAGAAACAAATTAA
* *** * *
8218919 AAATATATTAAAACAATTCTTAAAACAATACACAAATTAA
1 AAATACATTAAAACAAAAATTAAAACAAGAAACAAATTAA
8218959 AAA
1 AAA
8218962 ATATAATAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
39 24 0.67
40 12 0.33
ACGTcount: A:0.66, C:0.11, G:0.01, T:0.22
Consensus pattern (40 bp):
AAATACATTAAAACAAAAATTAAAACAAGAAACAAATTAA
Found at i:8219040 original size:23 final size:23
Alignment explanation
Indices: 8219006--8219050 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8218996 TAAAATTAAA
* *
8219006 ATTAAAATTAAAATATAAATATG
1 ATTAAAAATAAAAAATAAATATG
*
8219029 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAAAATAAATAT
8219051 ATTTATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATG
Found at i:8219042 original size:6 final size:6
Alignment explanation
Indices: 8218982--8219024 Score: 77
Period size: 6 Copynumber: 7.0 Consensus size: 6
8218972 AATTGATTAT
8218982 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATATAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA AT-TAAA
8219025 TATGATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATTAAA
Found at i:8219337 original size:17 final size:17
Alignment explanation
Indices: 8219298--8219330 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8219288 TTTTACTACA
*
8219298 ATTT-TTGTTTTTATTT
1 ATTTATTGTTTCTATTT
8219314 ATTTATTGTTTCTATTT
1 ATTTATTGTTTCTATTT
8219331 TTATATTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (17 bp):
ATTTATTGTTTCTATTT
Found at i:8220403 original size:18 final size:18
Alignment explanation
Indices: 8220380--8220415 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8220370 ATGCATTGAA
8220380 CTTTACCTACTAAAAAGG
1 CTTTACCTACTAAAAAGG
8220398 CTTTACCTACTAAAAAGG
1 CTTTACCTACTAAAAAGG
8220416 ATTGACTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (18 bp):
CTTTACCTACTAAAAAGG
Found at i:8230000 original size:46 final size:46
Alignment explanation
Indices: 8229948--8230176 Score: 307
Period size: 46 Copynumber: 5.0 Consensus size: 46
8229938 AGTGTGCTCT
8229948 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8229994 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8230040 CTGATATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * ** *
8230086 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
8230133 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8230177 TCATGTCGAA
Statistics
Matches: 163, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
46 125 0.77
47 38 0.23
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8230151 original size:93 final size:92
Alignment explanation
Indices: 8229953--8230176 Score: 297
Period size: 93 Copynumber: 2.4 Consensus size: 92
8229943 GCTCTCTGAT
* **
8229953 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAGAAAATGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGAAAATGAATAAGACCAT
* *
8230018 GGTTGAAAGATACCATGGCAACCTGAT
66 GGTTGAAAGATACCATGGCAACATGAC
* * * *
8230045 ATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGAAAATGAATAAGACC
*
8230109 ATGGTTGAATGATACCATGGCAACATGAC
64 ATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8230138 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8230177 TCATGTCGAA
Statistics
Matches: 114, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
92 42 0.37
93 72 0.63
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGAAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:8234319 original size:30 final size:31
Alignment explanation
Indices: 8234263--8234320 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
8234253 ATAATGTAAC
* *
8234263 TTTTGGCCCTTGAACTTGGCAAATTGTTCTA
1 TTTTGACCCTTGAACTTGGAAAATTGTTCTA
*
8234294 TTTTGACCCTTGAA-TTTGAAAATTGTT
1 TTTTGACCCTTGAACTTGGAAAATTGTT
8234321 ATTTATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.45
Consensus pattern (31 bp):
TTTTGACCCTTGAACTTGGAAAATTGTTCTA
Found at i:8237653 original size:33 final size:32
Alignment explanation
Indices: 8237614--8237711 Score: 85
Period size: 33 Copynumber: 3.0 Consensus size: 32
8237604 TTAATTACAA
8237614 ATATTTAATAATTATATTTAAATATTTAAAAT
1 ATATTTAATAATTATATTTAAATATTTAAAAT
* * *
8237646 ATAATTT-ATATATTTTAATTAAAT-TTTATAA-
1 AT-ATTTAATA-ATTATATTTAAATATTTAAAAT
* *
8237677 ATAGTTAATATTTATTATTTAAAAATATTTAAAAT
1 ATATTTAATAATTA-TATTT--AAATATTTAAAAT
8237712 TTATATTTCA
Statistics
Matches: 50, Mismatches: 8, Indels: 13
0.70 0.11 0.18
Matches are distributed among these distances:
30 5 0.10
31 9 0.18
32 11 0.22
33 19 0.38
34 6 0.12
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (32 bp):
ATATTTAATAATTATATTTAAATATTTAAAAT
Found at i:8237658 original size:20 final size:21
Alignment explanation
Indices: 8237589--8237719 Score: 76
Period size: 21 Copynumber: 6.0 Consensus size: 21
8237579 TAAAATAATA
*
8237589 TAAATATATTAATATTTA-ATT
1 TAAATAT-TTAATAATTATATT
*
8237610 ACAAATATTTAATAATTATATT
1 -TAAATATTTAATAATTATATT
8237632 TAAATATTTAA-AA-TATAATT
1 TAAATATTTAATAATTAT-ATT
* *
8237652 TATATATTTTAATTAAATT-T-TA
1 TAAATA-TTTAA-T-AATTATATT
* *
8237674 TAAATAGTTAATATTTATTATT
1 TAAATATTTAATAATTA-TATT
8237696 TAAAAATATTTAA-AATTTATATT
1 T--AAATATTTAATAA-TTATATT
8237719 T
1 T
8237720 CATATGTTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
19 6 0.07
20 11 0.13
21 29 0.34
22 17 0.20
23 6 0.07
24 15 0.18
25 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (21 bp):
TAAATATTTAATAATTATATT
Found at i:8237702 original size:24 final size:23
Alignment explanation
Indices: 8237670--8237719 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
8237660 TTAATTAAAT
* *
8237670 TTTATAAATAGTTAATATTTATTA
1 TTTAAAAATAGTTAAAATTTA-TA
*
8237694 TTTAAAAATATTTAAAATTTATA
1 TTTAAAAATAGTTAAAATTTATA
8237717 TTT
1 TTT
8237720 CATATGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTAAAAATAGTTAAAATTTATA
Found at i:8237811 original size:22 final size:19
Alignment explanation
Indices: 8237775--8237815 Score: 55
Period size: 22 Copynumber: 2.0 Consensus size: 19
8237765 TTACTAAAAC
8237775 ATAATATTAATTAATTTAA
1 ATAATATTAATTAATTTAA
8237794 ATAATATTTAAATATAATTTAA
1 ATAATA-TT-AAT-TAATTTAA
8237816 TAAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 2 0.11
21 3 0.16
22 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAATATTAATTAATTTAA
Found at i:8239130 original size:22 final size:22
Alignment explanation
Indices: 8239100--8239141 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8239090 ATATACCTGT
8239100 TGTACCTCTTCGAAAAAAACCG
1 TGTACCTCTTCGAAAAAAACCG
* *
8239122 TGTATCTCTTTGAAAAAAAC
1 TGTACCTCTTCGAAAAAAAC
8239142 GTCTATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (22 bp):
TGTACCTCTTCGAAAAAAACCG
Found at i:8245823 original size:20 final size:21
Alignment explanation
Indices: 8245784--8245824 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8245774 ACTTGTATAA
*
8245784 CTATCATCAAATATTCAAAAT
1 CTATCATCAAACATTCAAAAT
*
8245805 CTATCATTAAACA-TCAAAAT
1 CTATCATCAAACATTCAAAAT
8245825 ACTCATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
CTATCATCAAACATTCAAAAT
Found at i:8249601 original size:35 final size:35
Alignment explanation
Indices: 8249562--8249743 Score: 181
Period size: 35 Copynumber: 5.2 Consensus size: 35
8249552 CATGGAAAAA
* * *
8249562 TTATGACACATAGGTATGGTATTGTCCATACTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
* * *
8249597 TTATGACATGTAGGTATGGTATTATCCATACCGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
*
8249632 CTAT-AATACGTAGGTATGGTATT-TCCCATA-TCGAG
1 TTATGAA-ACGTAGGTATGGTATTAT-CCATACT-GAG
* * *
8249667 TTATGAAACGTAGGTATGGTATTGTCTATATTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
* * * *
8249702 CTATGAAACATAGGTATGGTATTAACTATACTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
*
8249737 TTGTGAA
1 TTATGAA
8249744 TCATGGCACT
Statistics
Matches: 124, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
34 2 0.02
35 118 0.95
36 4 0.03
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (35 bp):
TTATGAAACGTAGGTATGGTATTATCCATACTGAG
Found at i:8249685 original size:70 final size:70
Alignment explanation
Indices: 8249563--8249743 Score: 206
Period size: 70 Copynumber: 2.6 Consensus size: 70
8249553 ATGGAAAAAT
* * *
8249563 TATGACACATAGGTATGGTATTGTCCATACTGAGTTATGACATGTAGGTATGGTATTATCCATAC
1 TATGAAACATAGGTATGGTATTGTCCATACTGAGTTATGAAACGTAGGTATGGTATTATCCATAC
8249628 CGAGC
66 CGAGC
* * *
8249633 TAT-AATACGTAGGTATGGTATT-TCCCATA-TCGAGTTATGAAACGTAGGTATGGTATTGTCTA
1 TATGAA-ACATAGGTATGGTATTGT-CCATACT-GAGTTATGAAACGTAGGTATGGTATTATCCA
**
8249695 TATTGAGC
63 TACCGAGC
** * *
8249703 TATGAAACATAGGTATGGTATTAACTATACTGAGTTGTGAA
1 TATGAAACATAGGTATGGTATTGTCCATACTGAGTTATGAA
8249744 TCATGGCACT
Statistics
Matches: 93, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
69 3 0.03
70 87 0.94
71 3 0.03
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (70 bp):
TATGAAACATAGGTATGGTATTGTCCATACTGAGTTATGAAACGTAGGTATGGTATTATCCATAC
CGAGC
Found at i:8251250 original size:30 final size:31
Alignment explanation
Indices: 8251226--8251284 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
8251216 GTAAATACTC
* **
8251226 AAAATTTGAAGGGTTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
8251256 AAAAGTTGAAGGACTAATAGTGTAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
8251285 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:8253473 original size:46 final size:46
Alignment explanation
Indices: 8253417--8253618 Score: 230
Period size: 46 Copynumber: 4.4 Consensus size: 46
8253407 TAAGACTATA
*
8253417 TTGAAAGATACTATGGCAATC-TAACGAGAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAA-CATAACGAGAAATGAATAAGACCATGG
*
8253463 TTGAAAGATACCATGGCAACATGAAAG-GAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAACAT-AACGAGAAATGAATAAGACCATGG
* * * ** *
8253509 TTGAAAGATACCATGGAAACGTGATAATAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAACATAACGAGAAATGAATAAGACCATGG
* * * *
8253555 TTGAAAGATACCATGACAACATGAC-AGAAAATGAGTAAGACCATAG
1 TTGAAAGATACCATGGCAACATAACGAG-AAATGAATAAGACCATGG
* *
8253601 TTGAAAGACACTATGGCA
1 TTGAAAGATACCATGGCA
8253619 TCATGTCGAA
Statistics
Matches: 134, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
45 3 0.02
46 128 0.96
47 3 0.02
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (46 bp):
TTGAAAGATACCATGGCAACATAACGAGAAATGAATAAGACCATGG
Found at i:8256917 original size:87 final size:86
Alignment explanation
Indices: 8256764--8256926 Score: 254
Period size: 87 Copynumber: 1.9 Consensus size: 86
8256754 TGTATAATGA
* **
8256764 TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCTTATTGAGACGGACTTGAT
1 TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACAAACTTGAT
8256829 GAATTCACCGATTTGAGAGGT
66 GAATTCACCGATTTGAGAGGT
* * **
8256850 TGAGTTTATTACTCTTAATGAGTTCATATCCCAGCTTTTGGGTGGTCCTATTGAGACAAACTTGA
1 TGAGTTT-TTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACAAACTTGA
8256915 TGAATTCACCGA
65 TGAATTCACCGA
8256927 CTTAAATTTG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 7 0.10
87 62 0.90
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (86 bp):
TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACAAACTTGAT
GAATTCACCGATTTGAGAGGT
Found at i:8265416 original size:12 final size:12
Alignment explanation
Indices: 8265397--8265428 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8265387 CTAAGTTCGA
8265397 TTCT-AATGGTT
1 TTCTGAATGGTT
8265408 TTCTGAATGGTT
1 TTCTGAATGGTT
8265420 TTCTGAATG
1 TTCTGAATG
8265429 TTACTGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.19, C:0.09, G:0.22, T:0.50
Consensus pattern (12 bp):
TTCTGAATGGTT
Found at i:8265564 original size:10 final size:10
Alignment explanation
Indices: 8265527--8265580 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
8265517 ATTCACCTCC
*
8265527 TTCTCTCAAC
1 TTCTCTCAAA
8265537 TT-TCTC-AA
1 TTCTCTCAAA
* *
8265545 TTTTCCCAAA
1 TTCTCTCAAA
8265555 TTCTCTCAAA
1 TTCTCTCAAA
*
8265565 CTCTCTCAAA
1 TTCTCTCAAA
8265575 -TCTCTC
1 TTCTCTC
8265581 GTTTTTAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
8 3 0.08
9 13 0.35
10 21 0.57
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:8265810 original size:21 final size:19
Alignment explanation
Indices: 8265765--8265801 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8265755 TCAATAATGT
*
8265765 TAAATTTAATTTTTTATTA
1 TAAATATAATTTTTTATTA
8265784 TAAATATAATTTTTTATT
1 TAAATATAATTTTTTATT
8265802 GTATAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAATATAATTTTTTATTA
Found at i:8269442 original size:6 final size:5
Alignment explanation
Indices: 8269432--8269502 Score: 61
Period size: 6 Copynumber: 12.4 Consensus size: 5
8269422 CATAAAAAGC
8269432 AAAAT AGAAAT AAAAAT AAAAAT AAAAT AAAAT AAAAGAT AAAAGT AAAGAT
1 AAAAT A-AAAT -AAAAT -AAAAT AAAAT AAAAT -AAA-AT AAAA-T AAA-AT
8269484 AAACAT AAACAT AAAAT AA
1 AAA-AT AAA-AT AAAAT AA
8269503 TCGGACTCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
5 16 0.27
6 39 0.66
7 4 0.07
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:8269446 original size:18 final size:17
Alignment explanation
Indices: 8269423--8269499 Score: 57
Period size: 18 Copynumber: 4.4 Consensus size: 17
8269413 ACAAAATGTC
*
8269423 ATAAAAAGCAAAATAGAA
1 ATAAAAAGAAAAATA-AA
*
8269441 ATAAAAATAAAAATAAA
1 ATAAAAAGAAAAATAAA
*
8269458 ATAAAATA-AAAGATAAA
1 ATAAAA-AGAAAAATAAA
* * *
8269475 AGTAAAGATAAACATAAA
1 A-TAAAAAGAAAAATAAA
8269493 CATAAAA
1 -ATAAAA
8269500 TAATCGGACT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
17 18 0.37
18 30 0.61
19 1 0.02
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.16
Consensus pattern (17 bp):
ATAAAAAGAAAAATAAA
Found at i:8269449 original size:12 final size:11
Alignment explanation
Indices: 8269432--8269502 Score: 72
Period size: 12 Copynumber: 6.1 Consensus size: 11
8269422 CATAAAAAGC
8269432 AAAATAGAAATA
1 AAAATA-AAATA
8269444 AAAATAAAA-A
1 AAAATAAAATA
8269454 TAAAATAAAATA
1 -AAAATAAAATA
8269466 AAAGATAAAAGTA
1 AAA-ATAAAA-TA
*
8269479 AAGATAAACATA
1 AAAATAAA-ATA
*
8269491 AACATAAAATA
1 AAAATAAAATA
8269502 A
1 A
8269503 TCGGACTCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
10 1 0.02
11 19 0.37
12 27 0.52
13 5 0.10
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:8280852 original size:21 final size:19
Alignment explanation
Indices: 8280823--8280875 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 19
8280813 CTATGATTTT
*
8280823 AATATAATAAAACATAACATAA
1 AATA-AATAAAA-ATAAAAT-A
8280845 AATAAATAATAAATAAAATA
1 AATAAATAA-AAATAAAATA
8280865 AATGAAATAAA
1 AAT-AAATAAA
8280876 GATAGAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.18
21 17 0.61
22 6 0.21
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (19 bp):
AATAAATAAAAATAAAATA
Found at i:8288488 original size:23 final size:23
Alignment explanation
Indices: 8288462--8288506 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8288452 TAAAATACCC
*
8288462 AAAACCAAAACCTTGACCCTAAT
1 AAAACCAAAACCTTAACCCTAAT
**
8288485 AAAATTAAAACCTTAACCCTAA
1 AAAACCAAAACCTTAACCCTAA
8288507 GAAGGAGAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAACCAAAACCTTAACCCTAAT
Found at i:8292663 original size:15 final size:15
Alignment explanation
Indices: 8292643--8292672 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8292633 CATTTTATTT
*
8292643 ATATTAGGATAATTA
1 ATATTAAGATAATTA
8292658 ATATTAAGATAATTA
1 ATATTAAGATAATTA
8292673 TTAAGGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:8300475 original size:24 final size:24
Alignment explanation
Indices: 8300425--8300471 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
8300415 AGGTTTCGTC
8300425 TTTCGTAGAAATGGGGGGTAAGGG
1 TTTCGTAGAAATGGGGGGTAAGGG
*
8300449 TTTCGTTGAAAT-GGGGGTAAGGG
1 TTTCGTAGAAATGGGGGGTAAGGG
8300472 GTTTGAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.23, C:0.04, G:0.45, T:0.28
Consensus pattern (24 bp):
TTTCGTAGAAATGGGGGGTAAGGG
Found at i:8300859 original size:9 final size:9
Alignment explanation
Indices: 8300834--8300879 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
8300824 TCGAAAAAAA
8300834 AATTCGAGTT
1 AATTCGA-TT
*
8300844 GATTCGATT
1 AATTCGATT
8300853 AATTCGATT
1 AATTCGATT
*
8300862 AACTCGATT
1 AATTCGATT
*
8300871 AACTCGATT
1 AATTCGATT
8300880 CGAATAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (9 bp):
AATTCGATT
Found at i:8305058 original size:78 final size:78
Alignment explanation
Indices: 8304929--8305083 Score: 274
Period size: 78 Copynumber: 2.0 Consensus size: 78
8304919 TCTACTTCAA
*
8304929 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAATGTGGTTTCATTCTTTGTTGACT
1 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
*
8304994 GAGATATGGATAG
66 GAGATAGGGATAG
**
8305007 AGGCTGAATATAGAAGTTTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
1 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
8305072 GAGATAGGGATA
66 GAGATAGGGATA
8305084 AAGCTTCGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.35
Consensus pattern (78 bp):
AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
GAGATAGGGATAG
Found at i:8305593 original size:35 final size:35
Alignment explanation
Indices: 8305547--8305616 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
8305537 ATGTGTATGT
8305547 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
1 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
8305582 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
1 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
8305617 TGTAACCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (35 bp):
ATATACCTGAATAAATACCAGTATTTTCCACAGGC
Found at i:8312839 original size:2 final size:2
Alignment explanation
Indices: 8312832--8312874 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8312822 TAACAAAGAG
8312832 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8312874 C
1 C
8312875 CCTTCCCAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8313583 original size:16 final size:18
Alignment explanation
Indices: 8313552--8313589 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
8313542 GGCACAACCG
8313552 AATTTTTTAATATTAAAA
1 AATTTTTTAATATTAAAA
8313570 AATTTTTT-AT-TTAAAA
1 AATTTTTTAATATTAAAA
8313586 AATT
1 AATT
8313590 ATTATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTTTTTAATATTAAAA
Found at i:8317417 original size:33 final size:33
Alignment explanation
Indices: 8317343--8317460 Score: 114
Period size: 33 Copynumber: 3.6 Consensus size: 33
8317333 ATAAACTTGA
* * * *
8317343 GCCGAGAGGAGTAGAATATGGCGGTGGATATGG
1 GCCGGGAGGAGTAGAGTACGACGGTGGATATGG
8317376 GCCGGGAGGAGTAGAGTACGACGGTGGATAT-G
1 GCCGGGAGGAGTAGAGTACGACGGTGGATATGG
** * * *
8317408 GCTTTGGAGGAGTTGAGTAC-ATGGGTGGATACGG
1 GC-CGGGAGGAGTAGAGTACGA-CGGTGGATATGG
*
8317442 GCCGGAAGGAGTAGAGTAC
1 GCCGGGAGGAGTAGAGTAC
8317461 TGAGATAAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
32 4 0.06
33 62 0.90
34 3 0.04
ACGTcount: A:0.25, C:0.11, G:0.45, T:0.19
Consensus pattern (33 bp):
GCCGGGAGGAGTAGAGTACGACGGTGGATATGG
Found at i:8317632 original size:12 final size:12
Alignment explanation
Indices: 8317615--8317645 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8317605 TGTAGTTCCG
*
8317615 GCTCTGGCTCCT
1 GCTCTGGCTCCC
8317627 GCTCTGGCTCCC
1 GCTCTGGCTCCC
8317639 GCTCTGG
1 GCTCTGG
8317646 TGCATGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.42, G:0.29, T:0.29
Consensus pattern (12 bp):
GCTCTGGCTCCC
Found at i:8319513 original size:15 final size:15
Alignment explanation
Indices: 8319493--8319523 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8319483 ATATATAATA
8319493 ATATAAAATTACATT
1 ATATAAAATTACATT
8319508 ATATAAAATTACATT
1 ATATAAAATTACATT
8319523 A
1 A
8319524 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
ATATAAAATTACATT
Found at i:8319997 original size:111 final size:113
Alignment explanation
Indices: 8319581--8320019 Score: 674
Period size: 114 Copynumber: 3.9 Consensus size: 113
8319571 ATACTAACAC
* * *
8319581 AAAATAACTATAAAAT-TATTTTTT-AAGTACATTACTAAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAATAT-TTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAAT--AC
* *
8319644 ACTAAACCAGTAAACACCAACAA--TATATAACCTAATCTTAAATTACTAAT
62 ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
8319694 AAAATAGCTATAAAAATATATTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
1 AAAATAGCTAT-AAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
8319759 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
65 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* * *
8319808 AAAATAGCTATAAAAATATTTTTTTTAAATATATTACTAAAAAAATTACAATACACTAATACATT
1 AAAATAGCTAT-AAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
*
8319873 AAACCATTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
65 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
8319922 AAAATAGCTAT-AACT-TTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTA
1 AAAATAGCTATAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTA
*
8319985 AACTACTAAACACTAACAATTTATATAACCTAATC
66 AACCACTAAACACTAACAATTTATATAACCTAATC
8320020 AACTATAAAA
Statistics
Matches: 304, Mismatches: 17, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
111 78 0.26
112 26 0.09
113 10 0.03
114 179 0.59
115 11 0.04
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.31
Consensus pattern (113 bp):
AAAATAGCTATAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTA
AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:8320003 original size:225 final size:225
Alignment explanation
Indices: 8319581--8320019 Score: 697
Period size: 225 Copynumber: 1.9 Consensus size: 225
8319571 ATACTAACAC
*
8319581 AAAATAACTATAAAATTATTTTTTAAGTACATTACTAAAAAAAATCACAATACACTAATACACAC
1 AAAATAACTATAAAATTATTTTTTAAATACATTACTAAAAAAAATCACAATACACTAATA-ACAC
8319646 TAAACCAGTAAACACCAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAAT
65 TAAACCAGTAAACACCAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTAT-AAAAT
8319711 ATATTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAA
129 ATATTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAA
8319776 CAATTTATATAACCTAATCTTAAATTACTAAT
194 CAATTTATATAACCTAATCTTAAATTACTAAT
* * * *
8319808 AAAATAGCTATAAAAATATTTTTTTTAAATATATTACT-AAAAAAATTACAATACACTAAT-ACA
1 AAAATAACTAT-AAAAT-TATTTTTTAAATACATTACTAAAAAAAATCACAATACACTAATAACA
* * *
8319871 TTAAACCATTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT-AA
64 CTAAACCAGTAAACACCAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAA
* * *
8319935 CT-TTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTACTAAACACT
127 ATATATTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACT
8319999 AACAATTTATATAACCTAATC
192 AACAATTTATATAACCTAATC
8320020 AACTATAAAA
Statistics
Matches: 197, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
225 81 0.41
226 25 0.13
227 10 0.05
228 64 0.32
229 17 0.09
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.31
Consensus pattern (225 bp):
AAAATAACTATAAAATTATTTTTTAAATACATTACTAAAAAAAATCACAATACACTAATAACACT
AAACCAGTAAACACCAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAATAT
ATTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACA
ATTTATATAACCTAATCTTAAATTACTAAT
Found at i:8320538 original size:27 final size:27
Alignment explanation
Indices: 8320500--8320551 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
8320490 AGGTGGGGGT
*
8320500 GTCGTGCCTACCTGTCAGGCACGACTA
1 GTCGTGCCTACCTGACAGGCACGACTA
*
8320527 GTCGTGCCTACCTGACAGGCTCGAC
1 GTCGTGCCTACCTGACAGGCACGAC
8320552 CCGTTTCGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (27 bp):
GTCGTGCCTACCTGACAGGCACGACTA
Found at i:8323554 original size:22 final size:22
Alignment explanation
Indices: 8323526--8323570 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8323516 ATAAATTACA
8323526 TTAAATATAAAGTTAATTGAAT
1 TTAAATATAAAGTTAATTGAAT
8323548 TTAAATATAAAGTTAATTGAAT
1 TTAAATATAAAGTTAATTGAAT
8323570 T
1 T
8323571 AAACAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
TTAAATATAAAGTTAATTGAAT
Found at i:8323790 original size:30 final size:30
Alignment explanation
Indices: 8323750--8323816 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
8323740 ACGATAAATG
*
8323750 AACTTACTTGAGATGGGTGGGATAAAAGCA
1 AACTCACTTGAGATGGGTGGGATAAAAGCA
8323780 AACTCACTTGAGATGGGTGGGATAAAAGCA
1 AACTCACTTGAGATGGGTGGGATAAAAGCA
8323810 AACTCAC
1 AACTCAC
8323817 CACCCAAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (30 bp):
AACTCACTTGAGATGGGTGGGATAAAAGCA
Found at i:8327000 original size:13 final size:14
Alignment explanation
Indices: 8326976--8327004 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8326966 GAATTTTATT
8326976 TATTTTTCAAAAAA
1 TATTTTTCAAAAAA
8326990 TATTTTT-AAAAAA
1 TATTTTTCAAAAAA
8327003 TA
1 TA
8327005 AATAAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
TATTTTTCAAAAAA
Found at i:8330764 original size:24 final size:24
Alignment explanation
Indices: 8330737--8330785 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8330727 TGAACAATAT
8330737 CTCAAGCATGTCCCTTCTGCAGCC
1 CTCAAGCATGTCCCTTCTGCAGCC
8330761 CTCAAGCATGTCCCTTCTGCAGCC
1 CTCAAGCATGTCCCTTCTGCAGCC
8330785 C
1 C
8330786 CCCTTACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.43, G:0.16, T:0.24
Consensus pattern (24 bp):
CTCAAGCATGTCCCTTCTGCAGCC
Found at i:8341193 original size:47 final size:46
Alignment explanation
Indices: 8341126--8341252 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 46
8341116 CATCTCGTAG
8341126 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTC-TCAAT-A
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AATGA
* * * *
8341172 CCGATGCCATATCCCAGACATGGTTTTACACT-G-GCTCTCATAATGT
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAATGA
8341218 CGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 C-C-GATGCATGTCCCAGACATGTCTTACACTAGC
8341253 TCACGCAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
45 5 0.07
46 20 0.30
47 29 0.43
48 13 0.19
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAATGA
Found at i:8347593 original size:9 final size:9
Alignment explanation
Indices: 8347579--8347615 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
8347569 TATAGTTTGA
8347579 TATTCGAAT
1 TATTCGAAT
8347588 TATTCGAAT
1 TATTCGAAT
*
8347597 TATTCGAGT
1 TATTCGAAT
8347606 TATTCGAAT
1 TATTCGAAT
8347615 T
1 T
8347616 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8347681 original size:9 final size:9
Alignment explanation
Indices: 8347667--8347699 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
8347657 ATTCAAGTTG
8347667 ACTCGAATA
1 ACTCGAATA
*
8347676 ACTCGATTA
1 ACTCGAATA
8347685 ACTCGAATA
1 ACTCGAATA
8347694 ACTCGA
1 ACTCGA
8347700 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:8347690 original size:18 final size:18
Alignment explanation
Indices: 8347667--8347701 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8347657 ATTCAAGTTG
8347667 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
8347685 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
8347702 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:8363162 original size:30 final size:30
Alignment explanation
Indices: 8363126--8363291 Score: 188
Period size: 30 Copynumber: 5.5 Consensus size: 30
8363116 TTCGGTTATT
* *
8363126 AATTATGAAAAGAGATAGTGACGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
* *
8363156 AATTATGAAAAGGGATAGTGACAACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
*** * *
8363186 AATTATGAAAAGGGATGGTTTTGGCTATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
** *
8363216 CGTTATGAAAAGGGATGGTGACGACCATCG
1 AATTATGAAAAGGGATGGTGACGACCATCA
** *
8363246 AACAATGAAAAGGGATGGTGGCGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
*
8363276 AATTATGAAATGGGAT
1 AATTATGAAAAGGGAT
8363292 AGCTTCGACT
Statistics
Matches: 110, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 110 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCATCA
Found at i:8363238 original size:90 final size:90
Alignment explanation
Indices: 8363128--8363291 Score: 247
Period size: 90 Copynumber: 1.8 Consensus size: 90
8363118 CGGTTATTAA
**
8363128 TTATGAAAAGAGATAGTGACGACCATCAAATTATGAAAAGGGATAGTGACAACCATCAAATTATG
1 TTATGAAAAGAGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
8363193 AAAAGGGATGGTTTTGGCTATCACG
66 AAAAGGGATGGTTTTGGCTATCACG
* * * * * *
8363218 TTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGGTGGCGACCATCAAATTATG
1 TTATGAAAAGAGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
*
8363283 AAATGGGAT
66 AAAAGGGAT
8363292 AGCTTCGACT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 65 1.00
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (90 bp):
TTATGAAAAGAGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
AAAAGGGATGGTTTTGGCTATCACG
Found at i:8363304 original size:90 final size:90
Alignment explanation
Indices: 8363128--8363321 Score: 239
Period size: 90 Copynumber: 2.2 Consensus size: 90
8363118 CGGTTATTAA
* **
8363128 TTATGAAAAGAGATAGTGACGACCATCAAATTATGAAAAGGGATAGTGACAACCATCAAATTATG
1 TTATGAAAAGGGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
* * * *
8363193 AAAAGGGATGGTTTTGGCTATC-ACG
66 AAAAGGGATAGCTTCGACTATCGA-G
* * * * *
8363218 TTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGGTGGCGACCATCAAATTATG
1 TTATGAAAAGGGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
*
8363283 AAATGGGATAGCTTCGACTATCGAG
66 AAAAGGGATAGCTTCGACTATCGAG
*
8363308 ATATG-AAAGGGATA
1 TTATGAAAAGGGATA
8363322 ATTTCGGTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 8 0.09
90 79 0.90
91 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (90 bp):
TTATGAAAAGGGATAGTGACGACCATCAAACAATGAAAAGGGATAGTGACAACCATCAAATTATG
AAAAGGGATAGCTTCGACTATCGAG
Found at i:8367239 original size:15 final size:17
Alignment explanation
Indices: 8367221--8367252 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
8367211 TAGCATAATT
8367221 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
8367236 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
8367253 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:8370825 original size:23 final size:23
Alignment explanation
Indices: 8370799--8370862 Score: 56
Period size: 28 Copynumber: 2.6 Consensus size: 23
8370789 GATGGATTAT
8370799 ATTATTCTGGTGTATTTGGGAGG
1 ATTATTCTGGTGTATTTGGGAGG
* *
8370822 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTATTTGGGAGG
*
8370850 ATTATACTGGTGT
1 ATTATTCTGGTGT
8370863 GTTTTGGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
23 8 0.24
24 1 0.03
25 3 0.09
26 3 0.09
27 2 0.06
28 16 0.48
ACGTcount: A:0.20, C:0.05, G:0.31, T:0.44
Consensus pattern (23 bp):
ATTATTCTGGTGTATTTGGGAGG
Found at i:8370825 original size:28 final size:28
Alignment explanation
Indices: 8370772--8370855 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
8370762 CACTTTGTGC
8370772 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
* *
8370801 TATTCTGGTGTATTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
8370829 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
8370856 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:8371129 original size:21 final size:21
Alignment explanation
Indices: 8371081--8371141 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
8371071 ATGTGTCATA
*
8371081 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACCTTATGTGTCG
***
8371102 CAGCAGGCACCTTATGTGTCG
1 TTTCAGGCACCTTATGTGTCG
8371123 TTTCAGGCA-CTTATGTGTC
1 TTTCAGGCACCTTATGTGTC
8371142 ATATTCTGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 10 0.30
21 23 0.70
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (21 bp):
TTTCAGGCACCTTATGTGTCG
Found at i:8381282 original size:30 final size:30
Alignment explanation
Indices: 8381205--8381282 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
8381195 GGGATTGCTT
* *
8381205 CAACTATC-AATTATGAAAAGGGATGGTGA
1 CAACCATCAAATTATGAAAAAGGATGGTGA
* * *
8381234 CGACCATCGAA-TATTGAAAAAGGTTGGTGA
1 CAACCATCAAATTA-TGAAAAAGGATGGTGA
*
8381264 CAACCATTAAATTATGAAA
1 CAACCATCAAATTATGAAA
8381283 TGGGATAGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
29 8 0.21
30 29 0.74
31 2 0.05
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (30 bp):
CAACCATCAAATTATGAAAAAGGATGGTGA
Found at i:8390470 original size:54 final size:54
Alignment explanation
Indices: 8390406--8390514 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
8390396 TGTTAAAAAT
8390406 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
1 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
*
8390460 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAGAATAACCAGACAGC
1 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
8390514 T
1 T
8390515 ACACATGGCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (54 bp):
TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
Found at i:8394750 original size:52 final size:52
Alignment explanation
Indices: 8394652--8394756 Score: 142
Period size: 51 Copynumber: 2.0 Consensus size: 52
8394642 CCTAAAATTT
* **
8394652 AAGTATAAAATTTAATTTTTTTATCGTTTTAAAAAATTGTTCAAATTTTCAC
1 AAGTATAAAATTTAATTTTTTTATCCTTTTAAAAAATTGCACAAATTTTCAC
* *
8394704 AAGTATAAAATTT-A-TTTTTTATCCTATTTAAAAAATTGCACAAAATTTAAC
1 AAGTATAAAATTTAATTTTTTTATCCT-TTTAAAAAATTGCACAAATTTTCAC
8394755 AA
1 AA
8394757 TAATTTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
50 10 0.21
51 24 0.51
52 13 0.28
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.44
Consensus pattern (52 bp):
AAGTATAAAATTTAATTTTTTTATCCTTTTAAAAAATTGCACAAATTTTCAC
Found at i:8394852 original size:48 final size:48
Alignment explanation
Indices: 8394758--8394862 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
8394748 ATTTAACAAT
* * *
8394758 AATTTTTTATCAATATACTTTATTTTTTAAAACAGAAATTATCCCAAC
1 AATTTTTAATCAATATACTTTATTTTTTAAAACACAAACTATCCCAAC
8394806 AATTATTTAATCAATATA-TATTATTTTTT-AAACACAAACTATCCCAA-
1 AATT-TTTAATCAATATACT-TTATTTTTTAAAACACAAACTATCCCAAC
8394853 ATATTTTTAA
1 A-ATTTTTAA
8394863 ATGAAAATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
47 6 0.12
48 24 0.47
49 21 0.41
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (48 bp):
AATTTTTAATCAATATACTTTATTTTTTAAAACACAAACTATCCCAAC
Found at i:8401472 original size:90 final size:91
Alignment explanation
Indices: 8401295--8401478 Score: 219
Period size: 90 Copynumber: 2.0 Consensus size: 91
8401285 ATTGTGAAAG
* * * * *
8401295 TATAAATTTCATTCGAAATTCCGAACAATGGAGAGGTGTCTCGCATTCAAGAGTCACGATGAACA
1 TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
**
8401360 TTGCATATTGATCTAGCAGTGGACAA
66 TTGCATATCAATCTAGCAGTGGACAA
* ** * *
8401386 TATACATTCCATTCGAAATTCCGAATGATGGAGAAGT-TCTAGCATCCAAGAGCCACGATGGACG
1 TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
* *
8401450 TTGCATGTCAAT-TCAGCGGTGGACAA
66 TTGCATATCAATCT-AGCAGTGGACAA
8401476 TAT
1 TAT
8401479 GGATACGATA
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 1 0.01
90 45 0.58
91 32 0.41
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (91 bp):
TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
TTGCATATCAATCTAGCAGTGGACAA
Found at i:8402158 original size:25 final size:24
Alignment explanation
Indices: 8402096--8402158 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
8402086 TTTTCCTCAT
* * *
8402096 AATTATAATATAAATTATATTCAT
1 AATTTTAATATATATTATATTCAA
* *
8402120 AATATTACAAATATATTATATTTCAA
1 AATTTTA-ATATATATTATA-TTCAA
8402146 AATTTTAATATAT
1 AATTTTAATATAT
8402159 TTTTGTATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
24 5 0.17
25 15 0.50
26 10 0.33
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (24 bp):
AATTTTAATATATATTATATTCAA
Found at i:8407140 original size:44 final size:44
Alignment explanation
Indices: 8407077--8407164 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
8407067 TTCTTGTGGA
8407077 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATGCT
1 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATGCT
8407121 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATGCT
1 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATGCT
8407165 TCTCGACATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (44 bp):
CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATGCT
Found at i:8411487 original size:11 final size:11
Alignment explanation
Indices: 8411471--8411530 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
8411461 GTAACATTAA
8411471 AAAATATATAT
1 AAAATATATAT
8411482 AAAATATATATT
1 AAAATATATA-T
*
8411494 AAAAGACTTATAT
1 AAAATA--TATAT
* *
8411507 ATAACATATAT
1 AAAATATATAT
8411518 GAAAA-ATATAT
1 -AAAATATATAT
8411529 AA
1 AA
8411531 TATTAAACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (11 bp):
AAAATATATAT
Found at i:8411533 original size:25 final size:24
Alignment explanation
Indices: 8411470--8411529 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
8411460 AGTAACATTA
* * *
8411470 AAAAATATATATAAAATATATATT
1 AAAAATATATATATAACATATATG
8411494 AAAAGACT-TATATATAACATATATG
1 AAAA-A-TATATATATAACATATATG
8411519 AAAAATATATA
1 AAAAATATATA
8411530 ATATTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.03
24 9 0.30
25 19 0.63
26 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (24 bp):
AAAAATATATATATAACATATATG
Found at i:8415562 original size:22 final size:22
Alignment explanation
Indices: 8415537--8415580 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8415527 TAGTCATATA
8415537 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
8415559 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
8415581 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:8415616 original size:13 final size:14
Alignment explanation
Indices: 8415600--8415641 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
8415590 TTTCAATTTT
8415600 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
8415613 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
8415628 ATTTTAAATAATAT
1 ATTTT-AATAATAT
8415642 TATTCACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:8415626 original size:16 final size:16
Alignment explanation
Indices: 8415604--8415640 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8415594 AATTTTATTT
8415604 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
8415621 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
8415636 TAATA
1 TAATA
8415641 TTATTCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:8415693 original size:15 final size:15
Alignment explanation
Indices: 8415673--8415729 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
8415663 ATTCAATATT
8415673 AATATTTTAATAATA
1 AATATTTTAATAATA
*
8415688 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
8415707 AATATATTAATAATA
1 AATATTTTAATAATA
*
8415722 AATGTTTT
1 AATATTTT
8415730 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:8416730 original size:187 final size:187
Alignment explanation
Indices: 8416408--8416753 Score: 638
Period size: 187 Copynumber: 1.9 Consensus size: 187
8416398 GATAAACACC
*
8416408 AAATTATACATATCTATACCCCAAATACTTAGCATATTTATGGATGTTTATCACTAGATTTGTGG
1 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
* * *
8416473 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGTACTTAGGAGAGCACCAAGAGTCGAAAGG
66 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
*
8416538 AGCCAAAAATGAGCTAAAAAGGGACAAAATGGTCCTTTTTATGGATGTTTATACCCT
131 AGCCAAAAACGAGCTAAAAAGGGACAAAATGGTCCTTTTTATGGATGTTTATACCCT
8416595 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
1 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
*
8416660 ATTTTGGTGCTCTTAATCCAGTTATTTCATTTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
66 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
8416725 AGCCAAAAACGAGCTAAAAAGGGACAAAA
131 AGCCAAAAACGAGCTAAAAAGGGACAAAA
8416754 CGGACCAAAT
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
187 153 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (187 bp):
AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
AGCCAAAAACGAGCTAAAAAGGGACAAAATGGTCCTTTTTATGGATGTTTATACCCT
Found at i:8419450 original size:38 final size:38
Alignment explanation
Indices: 8419399--8419477 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
8419389 GAAATGAGAG
8419399 TAATGGGGTTTGAACCTAAGCTCTTCAACAAGGGATGC
1 TAATGGGGTTTGAACCTAAGCTCTTCAACAAGGGATGC
8419437 TAATGGGGTTTGAACCTAAGCTCTTCAACAAGGGATGC
1 TAATGGGGTTTGAACCTAAGCTCTTCAACAAGGGATGC
8419475 TAA
1 TAA
8419478 CATTTAACCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (38 bp):
TAATGGGGTTTGAACCTAAGCTCTTCAACAAGGGATGC
Found at i:8420620 original size:21 final size:21
Alignment explanation
Indices: 8420594--8420637 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8420584 AAGTGCTTTT
8420594 AACTTAGTACAAAACCTATAC
1 AACTTAGTACAAAACCTATAC
8420615 AACTTAGTACAAAACCTATAC
1 AACTTAGTACAAAACCTATAC
8420636 AA
1 AA
8420638 GCTCTCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.23
Consensus pattern (21 bp):
AACTTAGTACAAAACCTATAC
Found at i:8426364 original size:38 final size:40
Alignment explanation
Indices: 8426322--8426397 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
8426312 ACTTCTCTTA
*
8426322 CTCCTTAAAAAAT-ATTTTAAAA-ATTCATAATCAAAATT
1 CTCCTTAAAAAATAATTTTAAAATATTCATAACCAAAATT
*
8426360 CTCCTTAGAAAATAATTTTAAAATATTCATAACCAAAA
1 CTCCTTAAAAAATAATTTTAAAATATTCATAACCAAAA
8426398 CTCAAATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 12 0.35
39 9 0.26
40 13 0.38
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.34
Consensus pattern (40 bp):
CTCCTTAAAAAATAATTTTAAAATATTCATAACCAAAATT
Found at i:8429219 original size:2 final size:2
Alignment explanation
Indices: 8429212--8429237 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8429202 AATCAATGAA
8429212 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8429238 TATTTTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8433152 original size:25 final size:26
Alignment explanation
Indices: 8433102--8433155 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
8433092 CTCATGCGAA
* *
8433102 CATGTAAACGGGAAGCTCGTGTGAGC
1 CATGTAAACGAGAAGCTCGTGAGAGC
8433128 CATGT-AACGAGAAGCTC-TAGAGAGC
1 CATGTAAACGAGAAGCTCGT-GAGAGC
8433153 CAT
1 CAT
8433156 TAATAGGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.04
25 19 0.76
26 5 0.20
ACGTcount: A:0.31, C:0.20, G:0.30, T:0.19
Consensus pattern (26 bp):
CATGTAAACGAGAAGCTCGTGAGAGC
Done.