Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 320 of 425
Found at i:99774691 original size:17 final size:17
Alignment explanation
Indices: 99774669--99774702 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
99774659 ATAAAACAAG
99774669 ACCAAAATTTTGTCATA
1 ACCAAAATTTTGTCATA
99774686 ACCAAAATTTTGTCATA
1 ACCAAAATTTTGTCATA
99774703 TTCATTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
ACCAAAATTTTGTCATA
Found at i:99774943 original size:21 final size:21
Alignment explanation
Indices: 99774917--99774963 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
99774907 TTGAATGCTT
* *
99774917 TAGATTTTAAATGTTTAATGA
1 TAGATTATAAAGGTTTAATGA
*
99774938 TAGATTATGAAGGTTTAATGA
1 TAGATTATAAAGGTTTAATGA
99774959 TAGAT
1 TAGAT
99774964 ATACAAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
TAGATTATAAAGGTTTAATGA
Found at i:99775683 original size:22 final size:22
Alignment explanation
Indices: 99775658--99775757 Score: 105
Period size: 22 Copynumber: 4.5 Consensus size: 22
99775648 GCTCGTATAA
* *
99775658 CTTACTGTTCAGCTTAATAGAG
1 CTTACTATTCAGCTCAATAGAG
*
99775680 CTTACTATTCAGCTC-GTATGAG
1 CTTACTATTCAGCTCAATA-GAG
*
99775702 CTTACTATTCAGCTCGATAGAG
1 CTTACTATTCAGCTCAATAGAG
* *
99775724 CTTACCGT-TTTAGCTCATTAGAG
1 CTTA-C-TATTCAGCTCAATAGAG
99775747 CTTACTATTCA
1 CTTACTATTCA
99775758 TTAGCTCAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.05
22 42 0.65
23 19 0.29
24 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (22 bp):
CTTACTATTCAGCTCAATAGAG
Found at i:99775706 original size:44 final size:43
Alignment explanation
Indices: 99775644--99775728 Score: 125
Period size: 44 Copynumber: 2.0 Consensus size: 43
99775634 AGCTTACCGT
* *
99775644 TTCAGCTCGTATAACTTACTGTTCAGCTTAATAGAGCTTACTA
1 TTCAGCTCGTATAACTTACTATTCAGCTCAATAGAGCTTACTA
* *
99775687 TTCAGCTCGTATGAGCTTACTATTCAGCTCGATAGAGCTTAC
1 TTCAGCTCGTAT-AACTTACTATTCAGCTCAATAGAGCTTAC
99775729 CGTTTTAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 12 0.32
44 25 0.68
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (43 bp):
TTCAGCTCGTATAACTTACTATTCAGCTCAATAGAGCTTACTA
Found at i:99779579 original size:22 final size:22
Alignment explanation
Indices: 99779519--99779579 Score: 52
Period size: 22 Copynumber: 2.7 Consensus size: 22
99779509 TGATGAACCG
*
99779519 GATATTCAGATCGTATTTAGACA
1 GATATTCTGATC-TATTTAGACA
* * * *
99779542 GATTTTTTGTTGTATTTATGAC-
1 GATATTCTGATCTATTTA-GACA
99779564 GATATTCTGATCTATT
1 GATATTCTGATCTATT
99779580 CACGAGATCA
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (22 bp):
GATATTCTGATCTATTTAGACA
Found at i:99782095 original size:21 final size:21
Alignment explanation
Indices: 99782071--99782110 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
99782061 CTTGAGCTTT
* *
99782071 TGAATGTTTAGTGATAGATTA
1 TGAAGGTTTAATGATAGATTA
99782092 TGAAGGTTTAATGATAGAT
1 TGAAGGTTTAATGATAGAT
99782111 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (21 bp):
TGAAGGTTTAATGATAGATTA
Found at i:99782854 original size:22 final size:23
Alignment explanation
Indices: 99782768--99782844 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
99782758 AGTTTACTGT
*
99782768 TTTCAGCTC-ATTGGAGCTTACCG
1 TTTCAGCTCGA-TAGAGCTTACCG
*
99782791 TTTCAGCTCGATAGAGCTTACTG
1 TTTCAGCTCGATAGAGCTTACCG
99782814 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAGCTCGATAGAGCTTACCG
*
99782836 TTTTAGCTC
1 TTTCAGCTC
99782845 ATTAGACTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.44
23 26 0.54
24 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCG
Found at i:99790415 original size:22 final size:21
Alignment explanation
Indices: 99790375--99790415 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
99790365 CACTTGACAC
* *
99790375 AGGGGCACACTCCCGTGTGGG
1 AGGGGCACACGCCCATGTGGG
99790396 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACGCCCATGTG
99790416 ACCAGCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.29, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:99796455 original size:27 final size:27
Alignment explanation
Indices: 99796415--99796483 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
99796405 AAATTTGTAC
**
99796415 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCG-AGCTGATTATAT
*
99796443 AGCA-TATGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGCTGATTATAT
99796469 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
99796484 GACTCACTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 14 0.39
27 18 0.50
28 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGATTATAT
Found at i:99804064 original size:80 final size:80
Alignment explanation
Indices: 99803980--99804128 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
99803970 TATGGTAACC
* * * *
99803980 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
99804044 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
99804060 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
99804125 CCGG
66 CCGG
99804129 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:99804070 original size:40 final size:38
Alignment explanation
Indices: 99804021--99804128 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
99804011 ATCACGATTT
*
99804021 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
99804061 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
99804101 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
99804129 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:99813933 original size:42 final size:42
Alignment explanation
Indices: 99813853--99813963 Score: 102
Period size: 42 Copynumber: 2.6 Consensus size: 42
99813843 TCTGACATGT
* * **
99813853 AATCAATATTGATGCCACTGTCCCAGACAGAGTTTTACACG-A
1 AATCAATA-TGATGCCAATGTCCCAAACAGAGCCTTACACGTA
99813895 AATCATATATGATGCCAATGTCCCAAACATG-GCCTTACACGTA
1 AATCA-ATATGATGCCAATGTCCCAAACA-GAGCCTTACACGTA
*
99813938 AATTACAA-ATCGATGCCAACGTCCCA
1 AA-T-CAATAT-GATGCCAATGTCCCA
99813964 GATGTGATCT
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
42 31 0.53
43 9 0.16
44 16 0.28
45 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.24
Consensus pattern (42 bp):
AATCAATATGATGCCAATGTCCCAAACAGAGCCTTACACGTA
Found at i:99814985 original size:20 final size:21
Alignment explanation
Indices: 99814962--99815001 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
99814952 CCCCTAAAAC
99814962 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
99814982 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
99815002 TCACTAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:99816337 original size:48 final size:46
Alignment explanation
Indices: 99816263--99816485 Score: 148
Period size: 46 Copynumber: 4.7 Consensus size: 46
99816253 CACGCAACAA
* * * *
99816263 GCTGATGCCATGTCCTAGATAGGTCTTACACTAGCTTGTCCATCGCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCGCGAG
* *
99816312 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-A-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCGCGAG
* * * * *
99816356 ACATCGATGCATGTCCTAGACATGTCTTATACTGGCT-TAAATATCAG-GAG
1 GC-T-GATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATC-GCGAG
* * * *** *
99816406 GCCGATGCATGTCCCAGGCATGTCTTACACTGGCTCTCATATTGTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCGCGAG
* * *
99816452 GCCGATGCATGTCCCACACAAGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
99816486 GATTTATGTC
Statistics
Matches: 138, Mismatches: 26, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 67 0.49
47 1 0.01
48 56 0.41
49 9 0.07
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCGCGAG
Found at i:99816467 original size:46 final size:46
Alignment explanation
Indices: 99816308--99816482 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 46
99816298 TTGTCCATCG
* * * *
99816308 CGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAT
* *** * * *
99816354 CAACATCGATGCATGTCCTAGACATGTCTTATACTGGCT-TAAATAT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAT
*
99816400 CAGGAGGCCGATGCATGTCCCAGGCATGTCTTACACTGGCTCTCATAT
1 C--GAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAT
* * * *
99816448 TGTGGCCGATGCATGTCCCACACAAGTCTTACACT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACT
99816483 AGCGATTTAT
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
45 1 0.01
46 64 0.63
48 35 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAT
Found at i:99826192 original size:13 final size:13
Alignment explanation
Indices: 99826174--99826200 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99826164 GGAGTAATCG
99826174 CACACGGGCGTGT
1 CACACGGGCGTGT
99826187 CACACGGGCGTGT
1 CACACGGGCGTGT
99826200 C
1 C
99826201 CCTGCTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:99833717 original size:30 final size:30
Alignment explanation
Indices: 99833669--99833727 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
99833659 TTTACGAGCC
* * *
99833669 TAAGGGCCAAAGTGCAAATATGTGAAAGTT
1 TAAGGGCCAAAATACAAATATGTAAAAGTT
* *
99833699 TAAGGGTCAAAATACAAATTTGTAAAAGT
1 TAAGGGCCAAAATACAAATATGTAAAAGT
99833728 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.22, T:0.25
Consensus pattern (30 bp):
TAAGGGCCAAAATACAAATATGTAAAAGTT
Found at i:99833984 original size:18 final size:20
Alignment explanation
Indices: 99833948--99833994 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
99833938 AGTTGTAAGT
99833948 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
99833968 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
99833987 ATGATATA
1 AT-ATATA
99833995 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:99834424 original size:50 final size:50
Alignment explanation
Indices: 99834343--99834722 Score: 372
Period size: 50 Copynumber: 7.6 Consensus size: 50
99834333 TTTGTTGTGA
* * *
99834343 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
99834393 GTCGCATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCG-TTAACTTCA-
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--T-AG
* * * ** * * *
99834444 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** *
99834494 GTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
99834544 GTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * *
99834595 ATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
99834645 GTC-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
99834695 GTCGCATGTGTAGTACGAAGTGCAGGCT
1 GTCACATGTGTAGTACTAAGTGCAGGCT
99834723 GCTATGCATA
Statistics
Matches: 261, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
49 9 0.03
50 177 0.68
51 72 0.28
52 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:99834525 original size:101 final size:101
Alignment explanation
Indices: 99834344--99834734 Score: 301
Period size: 101 Copynumber: 3.9 Consensus size: 101
99834334 TTGTTGTGAG
* * * *
99834344 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* *
99834409 TAAGTGCAGGTTACTATGCGTACCCGTTAACTTCAA
66 TAAGTACAGGCTACTATGCGTACCCGTTAACTTCAA
** * **
99834445 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAAGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* * * * *
99834510 TAAGTACAGGCTACTACGTGTACCAGATTGA--T-AGG
66 TAAGTACAGGCTACTATGCGTACCCG-TTAACTTCA-A
* * * * * * ** **
99834545 TCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCCG-TTAACTTCGATCACATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGA-TAAG-TCACATGTGTAGT
* * * * * * **
99834609 ACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT-AA
64 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCAA
* * * *
99834645 GTC-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 -TCAC-GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGT
* * * *
99834709 ACGAAGTGCAGGCTGCTATGCATACC
64 ACTAAGTACAGGCTACTATGCGTACC
99834735 AGAGAGCTTC
Statistics
Matches: 230, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
99 2 0.01
100 70 0.30
101 152 0.66
102 6 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTACAGGCTACTATGCGTACCCGTTAACTTCAA
Found at i:99834745 original size:151 final size:151
Alignment explanation
Indices: 99834342--99834734 Score: 653
Period size: 151 Copynumber: 2.6 Consensus size: 151
99834332 ATTTGTTGTG
* * *
99834342 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCGCATGTGTAGT
1 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
99834407 ACTAAGTGCAGGTTACTATGCGTACCCGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
*
99834472 ACTACGTGTATTAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
*
99834493 AGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
99834558 ACTAAGTGAAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
99834623 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
99834644 AGTCCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
1 AGT-CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
* * *
99834708 TACGAAGTGCAGGCTGCTATGCATACC
65 TACTAAGTGCAGGCTACTATGCGTACC
99834735 AGAGAGCTTC
Statistics
Matches: 226, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
151 224 0.99
152 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:99834937 original size:16 final size:16
Alignment explanation
Indices: 99834916--99834947 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99834906 AGAATGGAGT
99834916 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
99834932 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
99834948 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:99837579 original size:53 final size:53
Alignment explanation
Indices: 99837396--99837649 Score: 268
Period size: 55 Copynumber: 4.8 Consensus size: 53
99837386 ATTAGGGTTT
* * *
99837396 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCATAAGGC
* * * * *
99837451 AAGGAAATCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * *
99837507 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
99837559 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
99837607 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
99837650 GTACCTGTGT
Statistics
Matches: 173, Mismatches: 22, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
48 40 0.23
51 2 0.01
52 4 0.02
53 45 0.26
54 9 0.05
55 69 0.40
56 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:99837740 original size:23 final size:24
Alignment explanation
Indices: 99837714--99837758 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
99837704 AAGGTAAGGT
*
99837714 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
99837737 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
99837759 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:99841315 original size:93 final size:88
Alignment explanation
Indices: 99841161--99841326 Score: 253
Period size: 93 Copynumber: 1.8 Consensus size: 88
99841151 GCCCATAAGT
99841161 GAACTCGGACTCAACTCAACGAGCTTGGCGAATCCATAAGTGAACTCGGACTCAACTCAACGAGC
1 GAACTCGGACTCAACTCAACGAGCTTGGCGAATCCATAAGTGAACTCGGACTCAACTCAACGAGC
99841226 TCGGATGCCTAGTTACATCTCTC
66 TCGGATGCCTAGTTACATCTCTC
*
99841249 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GG-----CGAATCCATAAGTGAACTCGGACTCAACTCA
*
99841313 ACGAGTTCGGATGC
60 ACGAGCTCGGATGC
99841327 TCAACCATCC
Statistics
Matches: 70, Mismatches: 2, Indels: 7
0.89 0.03 0.09
Matches are distributed among these distances:
87 2 0.03
88 25 0.36
93 43 0.61
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (88 bp):
GAACTCGGACTCAACTCAACGAGCTTGGCGAATCCATAAGTGAACTCGGACTCAACTCAACGAGC
TCGGATGCCTAGTTACATCTCTC
Found at i:99841316 original size:46 final size:43
Alignment explanation
Indices: 99841153--99841324 Score: 181
Period size: 41 Copynumber: 3.9 Consensus size: 43
99841143 TGTAACCCGC
*
99841153 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--CGAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATCGCAT
*
99841194 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT-GCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCG-C-A--T
* ***
99841240 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG--A-TCGCAT
99841287 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
99841325 GCTCAACCAT
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
40 1 0.01
41 33 0.31
42 1 0.01
43 1 0.01
44 2 0.02
46 33 0.31
47 32 0.30
49 2 0.02
50 2 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (43 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCGCAT
Found at i:99841342 original size:46 final size:45
Alignment explanation
Indices: 99841158--99841342 Score: 133
Period size: 46 Copynumber: 4.1 Consensus size: 45
99841148 CCCGCCCATA
* *
99841158 AGTGAACTCGGACTCAACTCAACGAGCTT--G--GCGAATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCAA-CCATCCT
*
99841199 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
99841248 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
99841291 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
99841338 AGTGA
1 AGTGA
99841343 CATGTCACTT
Statistics
Matches: 115, Mismatches: 8, Indels: 37
0.72 0.05 0.23
Matches are distributed among these distances:
40 1 0.01
41 27 0.23
42 2 0.02
43 6 0.05
44 3 0.03
45 1 0.01
46 37 0.32
47 29 0.25
48 6 0.05
49 1 0.01
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:99847950 original size:55 final size:53
Alignment explanation
Indices: 99847863--99848067 Score: 225
Period size: 55 Copynumber: 3.8 Consensus size: 53
99847853 ATTAGGGTTT
*
99847863 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTATAAGGC
* * * * * *
99847918 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TATAAGG-C
* * * * *
99847974 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTATAAGGC
*
99848026 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA
99848068 ATTCAAAAGG
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.03
53 39 0.31
54 8 0.06
55 69 0.56
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTATAAGGC
Found at i:99848207 original size:23 final size:24
Alignment explanation
Indices: 99848181--99848225 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
99848171 AAGGTAAGGT
*
99848181 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
99848204 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
99848226 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:99848331 original size:12 final size:12
Alignment explanation
Indices: 99848301--99848333 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
99848291 TTAATAAATT
99848301 TGATTAAGTAAG
1 TGATTAAGTAAG
99848313 T-ATTTAAGTAAG
1 TGA-TTAAGTAAG
99848325 TGATTAAGT
1 TGATTAAGT
99848334 GAAGAAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (12 bp):
TGATTAAGTAAG
Found at i:99851021 original size:40 final size:40
Alignment explanation
Indices: 99850977--99851162 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
99850967 GCTACTCGTT
* *
99850977 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
99851017 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
99851057 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
99851097 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
99851138 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
99851163 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.89
41 12 0.09
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:99856331 original size:29 final size:29
Alignment explanation
Indices: 99856241--99856399 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
99856231 ACTCGATTTC
* * **
99856241 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
99856270 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
99856298 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
99856328 GCACACTTAGTG-CATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
99856356 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
99856385 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
99856400 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 29 0.27
29 79 0.72
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:99864136 original size:29 final size:29
Alignment explanation
Indices: 99864046--99864205 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
99864036 ACTCGATTTC
* * **
99864046 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
99864075 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
99864103 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
99864133 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
99864162 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
99864191 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
99864206 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:99871636 original size:40 final size:40
Alignment explanation
Indices: 99871554--99871736 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
99871544 GCTACTCGTT
*
99871554 CAAATGCCTTCGGGACATAGCCC-G-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
99871593 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
99871633 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
99871671 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
99871712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
99871737 CATCATTCGA
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
38 35 0.28
39 23 0.18
40 56 0.44
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:99871669 original size:78 final size:80
Alignment explanation
Indices: 99871554--99871736 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 80
99871544 GCTACTCGTT
* **
99871554 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
99871618 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
99871633 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
99871696 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
99871712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
99871737 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 12 0.13
78 46 0.51
79 21 0.23
80 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:99876530 original size:40 final size:40
Alignment explanation
Indices: 99876486--99876595 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
99876476 TTCACAATTT
* *
99876486 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
99876526 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
99876566 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
99876596 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:99884582 original size:40 final size:40
Alignment explanation
Indices: 99884538--99884647 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
99884528 TTCACAATTT
* *
99884538 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
99884578 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
99884618 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
99884648 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:99888948 original size:48 final size:47
Alignment explanation
Indices: 99888846--99888953 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 47
99888836 TTTGTTTGTA
*
99888846 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCACATCATGAG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCACATCACGAG
* * *
99888892 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CA-TTGAGACGAG
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACAT--CACGAG
99888940 AGCTAGTGTAAGAC
1 AGCTAGTGTAAGAC
99888954 ATTTTTGGCA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
46 13 0.25
47 16 0.30
48 24 0.45
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCACATCACGAG
Found at i:99893044 original size:93 final size:93
Alignment explanation
Indices: 99892875--99893137 Score: 339
Period size: 93 Copynumber: 2.8 Consensus size: 93
99892865 GATATTTGGA
* * * * * * *
99892875 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCTCTTATGGATGCGAATGCCCGTACTCGTTGATTT
1 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
*
99892940 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
* *
99892968 CATCTGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTT
1 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
* *
99893033 GAGTCCTAGTTCGTGAAATGTAAGTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
* * * * *
99893061 CAT-TCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGTCTGAGCTCGTTGAGT
1 CATCT-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
* *
99893125 CGAGTCTGAGTTC
65 TGAGTCCGAGTTC
99893138 ACTTATGGGT
Statistics
Matches: 147, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
92 1 0.01
93 146 0.99
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (93 bp):
CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:99896342 original size:12 final size:12
Alignment explanation
Indices: 99896325--99896349 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99896315 GAATCCAAGA
99896325 TAGAGTAACATC
1 TAGAGTAACATC
99896337 TAGAGTAACATC
1 TAGAGTAACATC
99896349 T
1 T
99896350 CAGCTAGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TAGAGTAACATC
Found at i:99901075 original size:43 final size:43
Alignment explanation
Indices: 99901027--99901115 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
99901017 TGTCAAATTT
*
99901027 GATTTGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTC
1 GATTTGAGATATCGTGTAAGAACGTGTCTGGGACACAGGCTTC
* * * *
99901070 GATTTGAGATTTCGTGTAAGAACTTGTTTGGGACAGAGGCTTC
1 GATTTGAGATATCGTGTAAGAACGTGTCTGGGACACAGGCTTC
99901113 GAT
1 GAT
99901116 ATCGAATTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (43 bp):
GATTTGAGATATCGTGTAAGAACGTGTCTGGGACACAGGCTTC
Found at i:99901131 original size:43 final size:43
Alignment explanation
Indices: 99901041--99901133 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 43
99901031 TGAGATATCG
* * * *
99901041 TGTAAGACCGTGTCTGGGACACAGGCTTCGATTTGAGATTTCG
1 TGTAAGAACGTGTCTGGGACACAGGCTTCGATTCGAGATTACA
* * *
99901084 TGTAAGAACTTGTTTGGGACAGAGGCTTCGATATCGA-ATTACA
1 TGTAAGAACGTGTCTGGGACACAGGCTTCGAT-TCGAGATTACA
99901127 TGTAAGA
1 TGTAAGA
99901134 CCACATCTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 39 0.93
44 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGAACGTGTCTGGGACACAGGCTTCGATTCGAGATTACA
Found at i:99911165 original size:13 final size:13
Alignment explanation
Indices: 99911147--99911173 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99911137 GAAGTAATCA
99911147 CACACGGGCGTGT
1 CACACGGGCGTGT
99911160 CACACGGGCGTGT
1 CACACGGGCGTGT
99911173 C
1 C
99911174 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:99913721 original size:46 final size:46
Alignment explanation
Indices: 99913527--99913735 Score: 145
Period size: 46 Copynumber: 4.5 Consensus size: 46
99913517 TTTGTAAGCT
** * * ** * *
99913527 AGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGATAGCC
* ** * *
99913573 AGTGTAAGACCATGTCTGGGACATGGCATC-AGTATTGAGACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTA-CAAGACGATAGCC
* ** *
99913621 AATGTAAGACATGTCTGGGACATGCATCGGTCT-CGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-AACTACAAGACGAT-AGCC
* * * *
99913667 AGTATAAGACATGTCTGGGACATGCATCAACTACAAAATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGATAGCC
*
99913713 AGTGTAAGACCATATCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
99913736 CGACATCGAC
Statistics
Matches: 126, Mismatches: 28, Indels: 17
0.74 0.16 0.10
Matches are distributed among these distances:
45 2 0.02
46 64 0.51
47 40 0.32
48 20 0.16
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGATAGCC
Found at i:99913774 original size:140 final size:141
Alignment explanation
Indices: 99913520--99913791 Score: 334
Period size: 140 Copynumber: 1.9 Consensus size: 141
99913510 TCATTTGTTT
* * * **
99913520 GTAAGCTAGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAAAATGAGAGCCAGTGTAAGACCA
* * * * * *
99913585 TGTCTGGGACATGGCATCAGTATTGAGACGAAAGCTAATGTAAGACATGTCTGGGACAT-GCATC
66 TATCTGGGACACGACATCAGTATTGAGACGAAAGCCAATGTAAAACATGTCTAGGACATGGCATC
99913649 GGTCTCGAGAC
131 GGTCTCGAGAC
** * * *
99913660 GTAAGCCAGTATAAGACATGTCTGGGACATGCATCAACTACAAAATGATAGTCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAAAATGAGAGCCAGTGTAAGACCA
* **
99913725 TATCTGGGACACGACATC-G-ACTTGAGATGTGAGCCAATGTAAAACCATGTCTAGGACATGGCA
66 TATCTGGGACACGACATCAGTA-TTGAGACGAAAGCCAATGTAAAA-CATGTCTAGGACATGGCA
99913788 TCGG
129 TCGG
99913792 CACTTTACCC
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
138 1 0.01
139 19 0.17
140 83 0.75
141 7 0.06
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (141 bp):
GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAAAATGAGAGCCAGTGTAAGACCA
TATCTGGGACACGACATCAGTATTGAGACGAAAGCCAATGTAAAACATGTCTAGGACATGGCATC
GGTCTCGAGAC
Found at i:99913790 original size:47 final size:47
Alignment explanation
Indices: 99913569--99913790 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 47
99913559 ACATCATGAG
* *
99913569 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTA-TTGAGACGAA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTCGAGACGTA
* * *
99913617 AGCTAATGTAAGA-CATGTCTGGGACAT-GCATCGGTCTCGAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGACGTA
* * * * *
99913663 AGCCAGTATAAGA-CATGTCTGGGACAT-GCATCAACTACAAAATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGACGTA
* * * * * * *
99913708 TAGTCAGTGTAAGACCATATCTGGGACACGACATCGACTTGAGATGTG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGTA
* * *
99913756 AGCCAATGTAAAACCATGTCTAGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
99913791 GCACTTTACC
Statistics
Matches: 137, Mismatches: 31, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
45 3 0.02
46 58 0.42
47 58 0.42
48 18 0.13
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGTA
Found at i:99917287 original size:46 final size:48
Alignment explanation
Indices: 99917188--99917502 Score: 240
Period size: 46 Copynumber: 6.6 Consensus size: 48
99917178 TATCAGCCAA
* * * *
99917188 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA-G-GAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGA-C-AG
*
99917236 TGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTAAGACAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGACAG
* * * *
99917282 TGTAAGA-CATGTCTGGGACAT-CCATC-GACTACGAGATGT--GTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAAGACAG
* ** * * * *
99917326 TGTAAGACCATGTTTGGGACATGGCATTAGCATAGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGA-C-AG
* * * *
99917376 TGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACG-ATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTA-AGACAG
* * * * * *
99917425 TGTAAGACCATGTTTGGGACATGACATC-GACTTGAGATATGAA-CCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-AAGACAG
99917472 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
99917503 ATTCTACCCC
Statistics
Matches: 210, Mismatches: 42, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
44 10 0.05
45 16 0.08
46 55 0.26
47 48 0.23
48 17 0.08
49 29 0.14
50 31 0.15
51 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGACAG
Found at i:99917490 original size:47 final size:48
Alignment explanation
Indices: 99917182--99917500 Score: 209
Period size: 47 Copynumber: 6.7 Consensus size: 48
99917172 GATTATTATC
* *
99917182 AGCCAATGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAG--AGGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGATATGA
* * * * *
99917229 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGT-A
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGA
* * *
99917276 AGACAGTGTAAGA-CATGTCTGGGACAT-CCATCGAC-T-ACGAGATG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GATATGA
* * * * * *
99917320 TGTCAATGTAAGACCATGTTTGGGACATGGCAT-TAGCAT-AGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGATA--TGA
* * * * * *
99917369 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCA-ATGACGA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGA
* * *
99917418 TAGTCAGTGTAAGACCATGTTTGGGACATGACATCGACTTGAGATATGA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGA
99917467 A-CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
99917501 GCATTCTACC
Statistics
Matches: 208, Mismatches: 45, Indels: 37
0.72 0.16 0.13
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 16 0.08
46 44 0.21
47 47 0.23
48 14 0.07
49 38 0.18
50 33 0.16
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGA
Found at i:99918644 original size:22 final size:22
Alignment explanation
Indices: 99918616--99918678 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
99918606 TCGAATTGGT
99918616 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
99918638 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
*
99918660 CACACGGGCGCG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
99918679 GTGTCTAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
21 7 0.17
22 33 0.82
ACGTcount: A:0.10, C:0.43, G:0.29, T:0.19
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:99933364 original size:34 final size:34
Alignment explanation
Indices: 99933315--99933391 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
99933305 CTGTTGTATT
* *
99933315 ACTGATACTATTACTG-TAATGGGTTA-AGGCCTAC
1 ACTGATACTACTACTGCT-ATGGGTTACA-GCCCAC
*
99933349 ATTGATACTACTACTGCTATGGGTTACAGCCCAC
1 ACTGATACTACTACTGCTATGGGTTACAGCCCAC
99933383 ACTGATACT
1 ACTGATACT
99933392 GGACTGTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (34 bp):
ACTGATACTACTACTGCTATGGGTTACAGCCCAC
Found at i:99934079 original size:14 final size:15
Alignment explanation
Indices: 99934060--99934088 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99934050 GGTGGAAAAG
99934060 TATTTTTGAA-GTGT
1 TATTTTTGAATGTGT
99934074 TATTTTTGAATGTGT
1 TATTTTTGAATGTGT
99934089 GGTCTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (15 bp):
TATTTTTGAATGTGT
Found at i:99949985 original size:27 final size:27
Alignment explanation
Indices: 99949924--99949976 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
99949914 TCATACATCT
*
99949924 CATAGGGGCATAACAGTTATTTTATCA
1 CATAGGGGCATAACAGTCATTTTATCA
* *
99949951 CACAGGGGCATAATAGTCATTTTATC
1 CATAGGGGCATAACAGTCATTTTATC
99949977 GATTAGGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (27 bp):
CATAGGGGCATAACAGTCATTTTATCA
Found at i:99957888 original size:24 final size:25
Alignment explanation
Indices: 99957860--99957907 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
99957850 TGATTAAATT
99957860 TTAATTAAATAAATATT-AATTAAG
1 TTAATTAAATAAATATTAAATTAAG
* *
99957884 TTAATTAAATTATTATTAAATTAA
1 TTAATTAAATAAATATTAAATTAA
99957908 TCAATGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TTAATTAAATAAATATTAAATTAAG
Found at i:99957892 original size:20 final size:19
Alignment explanation
Indices: 99957860--99957908 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
99957850 TGATTAAATT
*
99957860 TTAATTAAATAAA-TATTAA
1 TTAATTAATTAAATTATT-A
99957879 TTAAGTTAATTAAATTATTA
1 TTAA-TTAATTAAATTATTA
99957899 TTAAATTAAT
1 TT-AATTAAT
99957909 CAATGTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 16 0.62
21 6 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TTAATTAATTAAATTATTA
Found at i:99961453 original size:31 final size:31
Alignment explanation
Indices: 99961410--99961481 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
99961400 TTAATTTAAA
* * * *
99961410 GGGATGAGGGTTGTTGTCA-TGGAGCACTTAG
1 GGGAGGAGGGTTGGTGTCAGTCGA-CACCTAG
*
99961441 GGGTGGAGGGTTGGTGTCAGTCGACACCTAG
1 GGGAGGAGGGTTGGTGTCAGTCGACACCTAG
99961472 GGGAGGAGGG
1 GGGAGGAGGG
99961482 CTGGGGAGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 31 0.91
32 3 0.09
ACGTcount: A:0.18, C:0.11, G:0.49, T:0.22
Consensus pattern (31 bp):
GGGAGGAGGGTTGGTGTCAGTCGACACCTAG
Found at i:99967083 original size:21 final size:22
Alignment explanation
Indices: 99967032--99967084 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
99967022 CATGTGGGAA
*
99967032 TGTTGCCCCTCCCACACGGGCG
1 TGTTGCCCCTCCCACACAGGCG
*
99967054 TGTTGCCCCTCCCACATAGGCG
1 TGTTGCCCCTCCCACACAGGCG
99967076 TG-TGCCCCT
1 TGTTGCCCCT
99967085 ATGTTAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 7 0.24
22 22 0.76
ACGTcount: A:0.09, C:0.43, G:0.25, T:0.23
Consensus pattern (22 bp):
TGTTGCCCCTCCCACACAGGCG
Found at i:99975582 original size:42 final size:42
Alignment explanation
Indices: 99975461--99975603 Score: 116
Period size: 42 Copynumber: 3.4 Consensus size: 42
99975451 TAAGATCGAA
* ** *
99975461 TCTGGGACACTGGCATCGATTAAAGATTACGA-GTAAGACCATG
1 TCTGGGACAGTGGCATCGA-TATTGATTAC-ATGTAAGACCCTG
* * * *
99975504 TCTGGGACA-TCGACATC-ATATTTAATTTCCTGTAAGACCCTG
1 TCTGGGACAGT-GGCATCGATA-TTGATTACATGTAAGACCCTG
*
99975546 TCTGGGACAGTGGCATCGATATTGATTACATATAAGACCAC-G
1 TCTGGGACAGTGGCATCGATATTGATTACATGTAAGACC-CTG
99975588 TCTGGGAC-GTTGGCAT
1 TCTGGGACAG-TGGCAT
99975604 TGTACGAGCT
Statistics
Matches: 81, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
41 3 0.04
42 59 0.73
43 19 0.23
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
TCTGGGACAGTGGCATCGATATTGATTACATGTAAGACCCTG
Found at i:99975818 original size:43 final size:43
Alignment explanation
Indices: 99975766--99975860 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 43
99975756 TCAGTTGATA
99975766 TATGATCAATTTGAAAATGAGATGTGGATACTAGCAAGTAAAC
1 TATGATCAATTTGAAAATGAGATGTGGATACTAGCAAGTAAAC
* * *
99975809 TATGATCAATTTGAAAATGAGATGTTGATACTAGCTAGTTAAC
1 TATGATCAATTTGAAAATGAGATGTGGATACTAGCAAGTAAAC
*
99975852 TATAATCAA
1 TATGATCAA
99975861 ATGAATTATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (43 bp):
TATGATCAATTTGAAAATGAGATGTGGATACTAGCAAGTAAAC
Found at i:99980849 original size:2 final size:2
Alignment explanation
Indices: 99980842--99980868 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
99980832 GTTAATGCTG
99980842 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
99980869 CAACGATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99982034 original size:48 final size:48
Alignment explanation
Indices: 99981963--99983018 Score: 1736
Period size: 48 Copynumber: 22.0 Consensus size: 48
99981953 ATAAATATAT
99981963 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982011 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
** *
99982059 ATATATGCATGATATGTATATGTGGTAAAGCAGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982107 ATATATGTGTGATAAGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
99982155 ACATATGTGTGATATGTATATGTCGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
99982203 ATATATGCGTGATATGTATATGTGGTAAAGCAGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982251 ATATATGTGTGATATGTATATGTGGTAAAGCTGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * *
99982299 ACATATGTGTGATATGTATATATCGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *** *
99982347 ATATATGTGTGAAATGTATATGTGGTAAAAATGAATGGTGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
99982395 ATATATGTGTGATATGTATATGTGGTAAAGCTGAATGGCGAATGTGAG
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99982443 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982491 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
99982539 ACATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982587 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
99982635 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCAAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982683 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99982731 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * *
99982779 ATATATGTGTGATATGTATATGTGGTAAAGCCAAATGACTATTGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
99982827 ACATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99982875 ATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99982923 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * *
99982971 ATATGTATGAGATAT-TAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGT-ATATGTGGTAAAGCCGAATGGCGAATGTGAA
99983019 GGTTGTAACA
Statistics
Matches: 937, Mismatches: 70, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
47 1 0.00
48 936 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:99983113 original size:37 final size:37
Alignment explanation
Indices: 99983063--99983170 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
99983053 GAAAATATAT
99983063 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
99983100 TCCGGGTAAGACCCGATGACTACGTGTAGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
99983137 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
99983171 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:99984447 original size:40 final size:40
Alignment explanation
Indices: 99984403--99984634 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
99984393 GAGAATTGAG
99984403 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
99984443 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
99984483 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
99984523 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
99984563 AGTGATGTATTCGGACTAAGTCCCGAAGAGCATTCGTGCC
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
99984603 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
99984635 ATCATGCTGG
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:99988383 original size:48 final size:48
Alignment explanation
Indices: 99988271--99989158 Score: 978
Period size: 48 Copynumber: 18.0 Consensus size: 48
99988261 AGATAAATAT
99988271 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC-AATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99988318 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99988366 ATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99988414 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * ** ** *
99988462 ACATATGTGTGCCGA-ATGGCGA-ATGTGAAACATATGTTTGATAT-G-TATATGTGTAA
1 ATATATGTGT---GATAT-G-TATATGTGGTA-A-A-G-CCGA-ATGGCGA-ATGTG-AA
* * * * * *
99988518 AGCCGA-ATG-GCTAATGTGAAATATATGT-GTGAAATG--TATATGTG-GTAAAGCCG-A
1 A---TATATGTG-TGATATG---TATATGTGGT-AAA-GCCGA-ATG-GCG-AATG-TGAA
** * * * * * ** *
99988572 ATGGCGA-ATGTGAAATATATGTGTGAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 AT--ATATGTGTGATATGTATATGTG---GTA-AAGCCG--AA--TG----GCGAATGTGAA
99988633 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99988681 ATATATG-GTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99988728 ATATATGTGTGATATGTATATGTGGTAAAGCCGAAT-GCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99988775 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
99988823 ACATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATCTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99988871 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99988919 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99988967 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99989015 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
99989063 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * *
99989111 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99989159 GGTTGTAACA
Statistics
Matches: 727, Mismatches: 65, Indels: 97
0.82 0.07 0.11
Matches are distributed among these distances:
47 131 0.18
48 485 0.67
50 8 0.01
51 9 0.01
52 3 0.00
53 10 0.01
54 11 0.02
55 13 0.02
56 15 0.02
57 7 0.01
58 10 0.01
59 2 0.00
60 15 0.02
61 7 0.01
62 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:99988476 original size:29 final size:29
Alignment explanation
Indices: 99988443--99988498 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
99988433 ATGTGGTAAA
99988443 GCCGAATGGCGAATGTGAAACATATGTGT
1 GCCGAATGGCGAATGTGAAACATATGTGT
99988472 GCCGAATGGCGAATGTGAAACATATGT
1 GCCGAATGGCGAATGTGAAACATATGT
99988499 TTGATATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (29 bp):
GCCGAATGGCGAATGTGAAACATATGTGT
Found at i:99988486 original size:77 final size:76
Alignment explanation
Indices: 99988395--99988548 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 76
99988385 ATGTGGTAAA
*
99988395 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAACATATGTGTGATATGTATATGT-GTAAAGCCGAATGGCGAATGTG
99988460 AAACATATGTGT
65 AAACATATGTGT
* *
99988472 GCCGAATGGCGAATGTGAAACATATGTTTGATATGTATATGTGTAAAGCCGAATGGCTAATGTGA
1 GCCGAATGGCGAATGTGAAACATATGTGTGATATGTATATGTGTAAAGCCGAATGGCGAATGTGA
*
99988537 AATATATGTGT
66 AACATATGTGT
99988548 G
1 G
99988549 AAATGTATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
76 33 0.45
77 40 0.55
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (76 bp):
GCCGAATGGCGAATGTGAAACATATGTGTGATATGTATATGTGTAAAGCCGAATGGCGAATGTGA
AACATATGTGT
Found at i:99988555 original size:124 final size:125
Alignment explanation
Indices: 99988347--99988596 Score: 439
Period size: 124 Copynumber: 2.0 Consensus size: 125
99988337 ATGTGGTAAA
*
99988347 GCCGAATGGCGAATGTGAAATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAACATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
99988412 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAACATATGTGT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAACATATGTGT
** *
99988472 GCCGAATGGCGAATGTGAAACATATGTTTGATATGTATATGT-GTAAAGCCGAATGGCTAATGTG
1 GCCGAATGGCGAATGTGAAACATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
99988536 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAACATATGTGT
99988596 G
1 G
99988597 AATGTATATG
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
124 80 0.67
125 39 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (125 bp):
GCCGAATGGCGAATGTGAAACATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAACATATGTGT
Found at i:99989002 original size:144 final size:144
Alignment explanation
Indices: 99988472--99989158 Score: 1202
Period size: 144 Copynumber: 4.8 Consensus size: 144
99988462 ACATATGTGT
* * *
99988472 GCCGAATGGCGAATGTGAAACATATGTTTGATATGTATATGT-GTAAAGCCGAATGGCTAATGTG
1 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
99988536 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGA-AT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
99988600 GTATATGTGGTAAA
131 GTATATGTGGTAAA
99988614 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
99988679 AAATATATG-GTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
99988743 GTATATGTGGTAAA
131 GTATATGTGGTAAA
99988757 GCCGAAT-GCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* *
99988821 AAACATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATCTGAAATATATGTGTGATAT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
99988886 GTATATGTGGTAAA
131 GTATATGTGGTAAA
*
99988900 GCCGAATGGCGAATGTGAAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * *
99988965 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGAAAT
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
99989030 GTATATGTGGTAAA
131 GTATATGTGGTAAA
*
99989044 GCCGAATGGCGAATGTGAAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * * * * *
99989109 AAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
99989159 GGTTGTAACA
Statistics
Matches: 526, Mismatches: 15, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
142 157 0.30
143 128 0.24
144 241 0.46
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.30
Consensus pattern (144 bp):
GCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
AAATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
GTATATGTGGTAAA
Found at i:99989257 original size:37 final size:37
Alignment explanation
Indices: 99989203--99989310 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
99989193 GGAAATATAT
*
99989203 TCCGGGTAAGACCCGATGGCTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
99989240 TCCGGGTAAGACTCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
99989277 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
99989311 TCATCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:99991723 original size:143 final size:144
Alignment explanation
Indices: 99991514--99991813 Score: 575
Period size: 143 Copynumber: 2.1 Consensus size: 144
99991504 GTGAGTTAAA
*
99991514 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
99991579 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA-TGTGT
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTAGTGTGT
99991643 GTGTGTGCATGAGT
131 GTGTGTGCATGAGT
99991657 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
99991722 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA-GTGTG
99991787 TGTGTGTGCATGAGT
130 TGTGTGTGCATGAGT
99991802 ATTCGGCCATGC
1 ATTCGGCCATGC
99991814 TATAGAATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
143 123 0.80
145 31 0.20
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (144 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTAGTGTGT
GTGTGTGCATGAGT
Found at i:99992490 original size:29 final size:29
Alignment explanation
Indices: 99992457--99992646 Score: 236
Period size: 29 Copynumber: 6.6 Consensus size: 29
99992447 GTGACGAGAT
99992457 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
99992486 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
99992515 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
99992544 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
99992573 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
99992602 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
99992631 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
99992647 GGCTTAAATT
Statistics
Matches: 144, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 144 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:99995545 original size:18 final size:18
Alignment explanation
Indices: 99995519--99995589 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
99995509 AATTGATCGG
*
99995519 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
99995537 TTATTCAGTAAAAATCAA
1 TTATTCAGTAACAGTCAA
* * *
99995555 ATATACAGTAAC-GATTATA
1 TTATTCAGTAACAG-TCA-A
*
99995574 TTGTTCAGTAACAGTC
1 TTATTCAGTAACAGTC
99995590 GATCTTTCCA
Statistics
Matches: 38, Mismatches: 12, Indels: 5
0.69 0.22 0.09
Matches are distributed among these distances:
18 26 0.68
19 11 0.29
20 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:99995733 original size:5 final size:6
Alignment explanation
Indices: 99995702--99995731 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
99995692 CCGAAGCCGG
99995702 AACAGT AACAGT AACAGT AACAGT -ACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
99995732 CACGGAGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:99996010 original size:19 final size:20
Alignment explanation
Indices: 99995963--99996010 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
99995953 CACTTTCTAG
*
99995963 TTTTCAATTAATTCATATTT
1 TTTTCAATTAACTCATATTT
*
99995983 TAATT-AATTAACT-ATATTT
1 T-TTTCAATTAACTCATATTT
99996002 TTTTCAATT
1 TTTTCAATT
99996011 CAATATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 8 0.35
21 2 0.09
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTCAATTAACTCATATTT
Found at i:99996939 original size:15 final size:16
Alignment explanation
Indices: 99996911--99996954 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
99996901 TCATCCTTTC
99996911 TTTCTTTTTCTATT-CTT
1 TTTC-TTTT-TATTCCTT
99996928 TTTCTTTTTATTCCTT
1 TTTCTTTTTATTCCTT
*
99996944 TTACTTTTTAT
1 TTTCTTTTTAT
99996955 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTCTTTTTATTCCTT
Found at i:99996959 original size:2 final size:2
Alignment explanation
Indices: 99996952--99996988 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
99996942 TTTTACTTTT
99996952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99996989 ATAACTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:99999919 original size:42 final size:42
Alignment explanation
Indices: 99999826--99999979 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 42
99999816 CAATGCCAAC
* * *
99999826 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGT-AACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGTCAA-T
* * *
99999869 GTCTCAGACAAT-TTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGAC-ATGGTCTTACACGAAATCAAATACGATGTCAAT
* *
99999911 GTCCCAGACATGGTCTTACACATAAATCATAAGT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACAC-GAAATCA-AA-TACGATGTCAAT
* *
99999955 GTCCCAGACGTGGTTTTACACGAAA
1 GTCCCAGACATGGTCTTACACGAAA
99999980 ACACATATCG
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 23 0.25
43 35 0.38
44 30 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATACGATGTCAAT
Found at i:100000852 original size:31 final size:32
Alignment explanation
Indices: 100000817--100000881 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
100000807 TGATAATTGC
100000817 CTAATTTCATACATT-TTTTATTTAATTATAA
1 CTAATTTCATACATTGTTTTATTTAATTATAA
* *
100000848 CTAATTTCATACTTTGTTTTATTTAATTTTAA
1 CTAATTTCATACATTGTTTTATTTAATTATAA
100000880 CT
1 CT
100000882 TATTAATCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 14 0.45
32 17 0.55
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.57
Consensus pattern (32 bp):
CTAATTTCATACATTGTTTTATTTAATTATAA
Found at i:100000927 original size:26 final size:25
Alignment explanation
Indices: 100000876--100000927 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
100000866 TTATTTAATT
*
100000876 TTAACTTATTAATCCAATTACCAAA
1 TTAACTTATTAATCCAATTACAAAA
*
100000901 TTAACCTTATTTAATCC-ATTATAAAA
1 TTAA-CTTA-TTAATCCAATTACAAAA
100000927 T
1 T
100000928 CACATATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 4 0.17
26 12 0.52
27 7 0.30
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAACTTATTAATCCAATTACAAAA
Found at i:100003510 original size:27 final size:28
Alignment explanation
Indices: 100003453--100003522 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
100003443 AAATTTGTAC
**
100003453 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
100003481 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
100003508 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
100003523 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:100003531 original size:27 final size:27
Alignment explanation
Indices: 100003453--100003534 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
100003443 AAATTTGTAC
* *
100003453 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
100003481 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
100003508 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
100003535 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:100011433 original size:27 final size:28
Alignment explanation
Indices: 100011376--100011445 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
100011366 AAATTTGTAC
**
100011376 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
100011404 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
100011431 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
100011446 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:100011454 original size:27 final size:27
Alignment explanation
Indices: 100011376--100011457 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
100011366 AAATTTGTAC
* *
100011376 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
100011404 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
100011431 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
100011458 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:100013001 original size:34 final size:34
Alignment explanation
Indices: 100012953--100013113 Score: 211
Period size: 34 Copynumber: 4.7 Consensus size: 34
100012943 ACGAATACAT
* * * *
100012953 TCTGGGCCTAAGCCCATATCAATAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGAAGCAG
*
100012987 TCTGGGCCTTAGCCCATTTCAGTAATAGTAA-CAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAG-AAGCAG
* *
100013021 TCTGGGCTTTAGCCCATTTTAGTAACAGAAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGAAGCAG
100013055 TCT-GGCCTTTAGCCCATTTCAGTAACAGAAGCAG
1 TCTGGGCC-TTAGCCCATTTCAGTAACAGAAGCAG
100013089 TCT-GGCCTTTAGCCCATTTCAGTAA
1 TCTGGGCC-TTAGCCCATTTCAGTAA
100013114 TAGTAATTAG
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
33 5 0.04
34 108 0.95
35 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGAAGCAG
Found at i:100013163 original size:18 final size:18
Alignment explanation
Indices: 100013117--100013166 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
100013107 TCAGTAATAG
*
100013117 TAATTAGTGCAGTAACCA
1 TAATTAGTGCAGTAACAA
* * *
100013135 TCATCAATGCAGTAACAA
1 TAATTAGTGCAGTAACAA
100013153 TAATTAGTGCAGTA
1 TAATTAGTGCAGTA
100013167 TGCAAGCAGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (18 bp):
TAATTAGTGCAGTAACAA
Found at i:100013522 original size:27 final size:26
Alignment explanation
Indices: 100013476--100013592 Score: 121
Period size: 27 Copynumber: 4.3 Consensus size: 26
100013466 GAACAAATCT
* *
100013476 GTCATTTTACCTTACCG-GGGTATTATA
1 GTCATTTTACCCTA-TGAGGGTATT-TA
* *
100013503 GTCATTTTACCCTA-CAGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTT-A
*
100013530 GTCATTCTACCCTATGAGGGTATTTA
1 GTCATTTTACCCTATGAGGGTATTTA
100013556 GGTCATTTTACCCTATGAGGGTATTTTA
1 -GTCATTTTACCCTATGAGGGTA-TTTA
100013584 GTCATTTTA
1 GTCATTTTA
100013593 TCACATAAGG
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
26 1 0.01
27 71 0.92
28 5 0.06
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (26 bp):
GTCATTTTACCCTATGAGGGTATTTA
Found at i:100013603 original size:27 final size:27
Alignment explanation
Indices: 100013584--100013820 Score: 366
Period size: 27 Copynumber: 8.8 Consensus size: 27
100013574 GGGTATTTTA
*
100013584 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* * *
100013611 GTCATTTTATCACATGAGGGAAAAATT
1 GTCATTTTATCACATAAGGGTAAAATC
* * *
100013638 ATCATTTCATCACATAAGGGTAAAATT
1 GTCATTTTATCACATAAGGGTAAAATC
100013665 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
*
100013692 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
*
100013719 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* *
100013746 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGTAAAATC
*
100013773 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
100013800 GTCATTTTATCACATAAGGGT
1 GTCATTTTATCACATAAGGGT
100013821 TCAAGTACGC
Statistics
Matches: 196, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 196 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGTAAAATC
Found at i:100016367 original size:29 final size:28
Alignment explanation
Indices: 100016333--100016435 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
100016323 TAATCGATCA
*
100016333 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
100016362 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
100016391 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
100016420 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
100016436 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:100025628 original size:42 final size:42
Alignment explanation
Indices: 100025424--100025629 Score: 157
Period size: 42 Copynumber: 4.9 Consensus size: 42
100025414 TTCTGAGATA
* * *
100025424 TGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT-TAACT
1 TGATTACGTGTAAGACCATGTCTGGGACGTTGGCATCGAAAT
* ** * **
100025465 TGAGATATCGTGTAAGATTATGTCTAGGACACTGGCATCGATTAA-
1 TGA-TTA-CGTGTAAGACCATGTCTGGGACGTTGGCATCGA--AAT
* * ** * *
100025510 TGATTATGTGTAAGACCATGTCTGGGACATCAGCATCGTATT
1 TGATTACGTGTAAGACCATGTCTGGGACGTTGGCATCGAAAT
* * * *
100025552 TAATTTCGTGTAAGACCCTGTCTGGAACAG-TGGCATCGAAAT
1 TGATTACGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAAAT
* *
100025594 TGATTACATATAAGACCATGTCTGGGACGTTGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGACGTTGGCAT
100025630 TGTACGAGCT
Statistics
Matches: 122, Mismatches: 35, Indels: 15
0.71 0.20 0.09
Matches are distributed among these distances:
41 5 0.04
42 60 0.49
43 50 0.41
44 3 0.02
45 3 0.02
46 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATGTCTGGGACGTTGGCATCGAAAT
Found at i:100029946 original size:42 final size:42
Alignment explanation
Indices: 100029885--100029966 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
100029875 TCTTATACTA
* * * * *
100029885 AAATCTTATTTCAATGCCATGTCCCAGACGTGGTCTTACACG
1 AAATCTCATATCAACGCCATATCCCAGACATGGTCTTACACG
*
100029927 AAATCTCATATCAACGCCATATCCCAGATATGGTCTTACA
1 AAATCTCATATCAACGCCATATCCCAGACATGGTCTTACA
100029967 TGATAACACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
AAATCTCATATCAACGCCATATCCCAGACATGGTCTTACACG
Found at i:100035958 original size:45 final size:45
Alignment explanation
Indices: 100035877--100035967 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
100035867 CCAAAACATG
* * *
100035877 TGTCTCATACATCATGAACTTAGACCACAACCCAATGAGTTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGA
* * *
100035922 TGTCACATATATCATAAACTCAGACCACGACTCAATGAGTTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGA
100035967 T
1 T
100035968 CACATAGTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (45 bp):
TGTCACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGA
Found at i:100045521 original size:31 final size:31
Alignment explanation
Indices: 100045485--100045549 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
100045475 CAGGCCAGTA
*
100045485 ACTTAAAT-AAAAACTTTCAAATAATTTAGTG
1 ACTTAAATGAAAAA-TTTCAAATAATTTAATG
* *
100045516 ACTTAAATGGAAAATTTTAAATAATTTAATG
1 ACTTAAATGAAAAATTTCAAATAATTTAATG
100045547 ACT
1 ACT
100045550 GTTTGTAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (31 bp):
ACTTAAATGAAAAATTTCAAATAATTTAATG
Found at i:100047202 original size:23 final size:24
Alignment explanation
Indices: 100047152--100047203 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
100047142 AACTAAAGTT
100047152 TAAATTTAAAAAATAGAAAAACTA
1 TAAATTTAAAAAATAGAAAAACTA
100047176 -AAATCTT-AAAAATA-AAAATA-TA
1 TAAAT-TTAAAAAATAGAAAA-ACTA
100047198 TAAATT
1 TAAATT
100047204 AAATTCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 2 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
TAAATTTAAAAAATAGAAAAACTA
Found at i:100056219 original size:29 final size:29
Alignment explanation
Indices: 100056185--100056316 Score: 169
Period size: 29 Copynumber: 4.6 Consensus size: 29
100056175 GTGACAAGAT
*
100056185 TGGCACTAAGTGTGC-AAGCTTGAAA-TATA
1 TGGCACTAAGTGTGCGAA-CTT-AAATTACA
*
100056214 TGGCACTAAGTGTGCGAATTTAAATTACA
1 TGGCACTAAGTGTGCGAACTTAAATTACA
*
100056243 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTACA
* * * *
100056272 TGGCACTATGTGTGGGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAATTACA
100056301 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100056317 TGATCGATTA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
28 3 0.03
29 85 0.94
30 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTACA
Found at i:100056254 original size:58 final size:58
Alignment explanation
Indices: 100056185--100056316 Score: 187
Period size: 58 Copynumber: 2.3 Consensus size: 58
100056175 GTGACAAGAT
* *
100056185 TGGCACTAAGTGTGC-AAGCTTGAAA-TATATGGCACTAAGTGTGCGAATTTAAATTACA
1 TGGCACTAAGTGTGCGAA-CTT-AAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
* * *
100056243 TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTATGTGTGGGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
100056301 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100056317 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
57 3 0.04
58 62 0.93
59 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
Found at i:100061449 original size:65 final size:65
Alignment explanation
Indices: 100061376--100061507 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
100061366 TCATACATAT
100061376 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
100061441 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
100061506 CT
1 CT
100061508 TACCACATAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (65 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
Found at i:100061488 original size:32 final size:32
Alignment explanation
Indices: 100061387--100061488 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
100061377 TCACATTAGC
100061387 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
100061419 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
100061452 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
100061484 CATTT
1 CATTT
100061489 CGCATTAGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 22 0.43
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:100061553 original size:47 final size:47
Alignment explanation
Indices: 100061491--100061706 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
100061481 ACACATTTCG
* * * *
100061491 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100061538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100061585 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
100061632 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100061679 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
100061707 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:100061597 original size:94 final size:94
Alignment explanation
Indices: 100061491--100061732 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
100061481 ACACATTTCG
*
100061491 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
100061556 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
100061585 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
100061650 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
100061679 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
100061733 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:100065202 original size:40 final size:40
Alignment explanation
Indices: 100065177--100065379 Score: 361
Period size: 40 Copynumber: 5.1 Consensus size: 40
100065167 GGACCCAGCT
*
100065177 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
100065217 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
100065257 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
100065297 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* * * *
100065337 CGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
100065377 CGG
1 CGG
100065380 CTATACAACT
Statistics
Matches: 158, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
Found at i:100067750 original size:65 final size:65
Alignment explanation
Indices: 100067677--100067808 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
100067667 TCATACATAT
100067677 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
100067742 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
100067807 CT
1 CT
100067809 TACCACATAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (65 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
Found at i:100067789 original size:32 final size:32
Alignment explanation
Indices: 100067688--100067789 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
100067678 TCACATTAGC
100067688 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
100067720 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
100067753 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
100067785 CATTT
1 CATTT
100067790 CGCATTAGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 22 0.43
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:100067854 original size:47 final size:47
Alignment explanation
Indices: 100067792--100068007 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
100067782 ACACATTTCG
* * * *
100067792 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100067839 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100067886 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
100067933 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100067980 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
100068008 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:100067898 original size:94 final size:94
Alignment explanation
Indices: 100067792--100068033 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
100067782 ACACATTTCG
*
100067792 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
100067857 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
100067886 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
100067951 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
100067980 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
100068034 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:100072304 original size:16 final size:16
Alignment explanation
Indices: 100072283--100072318 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
100072273 GAGTCTAAAT
100072283 ATTTGATGACTCAAAG
1 ATTTGATGACTCAAAG
*
100072299 ATTTGATGACTCAGAG
1 ATTTGATGACTCAAAG
100072315 ATTT
1 ATTT
100072319 AAACCTGCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (16 bp):
ATTTGATGACTCAAAG
Found at i:100075725 original size:42 final size:42
Alignment explanation
Indices: 100075679--100075785 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
100075669 TATTGGTCTC
100075679 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
100075721 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
100075763 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
100075786 ATTTGTACAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:100075851 original size:27 final size:28
Alignment explanation
Indices: 100075794--100075863 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
100075784 AAATTTGTAC
**
100075794 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
100075822 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
100075849 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
100075864 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:100078468 original size:13 final size:13
Alignment explanation
Indices: 100078452--100078476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100078442 CTTGGCACAC
100078452 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
100078465 GCCCGTGTCCTT
1 GCCCGTGTCCTT
100078477 CACACGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:100079532 original size:47 final size:47
Alignment explanation
Indices: 100079461--100079730 Score: 207
Period size: 47 Copynumber: 5.8 Consensus size: 47
100079451 GGTAAGGTGT
* * *
100079461 CGATGTCATGTCCTAGACACGGTCTTACATTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAAGC
*
100079508 CGATGCCATGTCCTAGACATGGTCTTACACTGGCT-ATCATCTCGTAGC
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTCATCATCTC-AAGC
* * * * *
100079556 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTTGAGGC
1 CGATGCATGTCCTAGACATGGTCTTACACTGGCTCATCATC-TCAAGC
* * * *
100079602 CAATGCATGTCCTAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGC
1 CGATGCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAA-GC
* * * * ***
100079648 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATAATGTGGC
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTCATCAT-CTCAAGC
* *
100079696 CGATGCATGTTCC-AAACAT-GTCTTACACTAGCTCA
1 CGATGCATG-TCCTAGACATGGTCTTACACTGGCTCA
100079731 CACACGAATG
Statistics
Matches: 186, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 74 0.40
47 75 0.40
48 32 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAAGC
Found at i:100079608 original size:46 final size:45
Alignment explanation
Indices: 100079467--100079678 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 45
100079457 GTGTCGATGT
* * * * * * *
100079467 CATGTCCTAGACACGGTCTTACATTGGCTCATATCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-ATGTCTCGAGCCAATG
* * *
100079513 CCATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCG-AGCCAATG
*
100079561 CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTTGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TATGTCTCGA-GCCAATG
* * ** *
100079607 CATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCGA-GCCAATG
100079653 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
100079679 AGCTCTCATA
Statistics
Matches: 142, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
45 2 0.01
46 62 0.44
47 61 0.43
48 17 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATGTCTCGAGCCAATG
Found at i:100081023 original size:40 final size:41
Alignment explanation
Indices: 100080972--100081063 Score: 136
Period size: 40 Copynumber: 2.3 Consensus size: 41
100080962 CTTGGTATCG
100080972 CACACTTAGTGCCT-CATATAGCCGAAGCTA-TTCCAATTCA
1 CACACTTAGTGCCTGCATATAGCCGAAGCTATTTCCAA-TCA
**
100081012 CACACTTAGTG-CTGTTTATAGCCGAAGCTATTTCCAATCA
1 CACACTTAGTGCCTGCATATAGCCGAAGCTATTTCCAATCA
100081052 CACACTTAGTGC
1 CACACTTAGTGC
100081064 TGAACATAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
39 2 0.04
40 39 0.83
41 6 0.13
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (41 bp):
CACACTTAGTGCCTGCATATAGCCGAAGCTATTTCCAATCA
Found at i:100081064 original size:40 final size:40
Alignment explanation
Indices: 100080988--100081065 Score: 140
Period size: 40 Copynumber: 1.9 Consensus size: 40
100080978 TAGTGCCTCA
100080988 TATAGCCGAAGCTATTCCAATTCACACACTTAGTGCTGTT
1 TATAGCCGAAGCTATTCCAATTCACACACTTAGTGCTGTT
100081028 TATAGCCGAAGCTATTTCCAA-TCACACACTTAGTGCTG
1 TATAGCCGAAGCTA-TTCCAATTCACACACTTAGTGCTG
100081066 AACATAGTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 31 0.84
41 6 0.16
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCCAATTCACACACTTAGTGCTGTT
Found at i:100088416 original size:40 final size:39
Alignment explanation
Indices: 100088309--100088446 Score: 127
Period size: 40 Copynumber: 3.4 Consensus size: 39
100088299 TGTAATGATC
* * * *
100088309 TCGCACACTTAGTGCCATCTCAAATAACCGAAGCTATCTCGATA
1 TCGCACACTTAGTGCTAT-T--TATAGCCGAAGCTAT-TCCA-A
100088353 TCGCACACTTAGTGCCTCA--TATAGCCGAAGCTATTCCAA
1 TCGCACACTTAGTG-CT-ATTTATAGCCGAAGCTATTCCAA
* *
100088392 GTCGCACACTTAGTGCTATTTATAGCCGAACCTATTTCAAA
1 -TCGCACACTTAGTGCTATTTATAGCCGAAGCTA-TTCCAA
100088433 TCGCACACTTAGTG
1 TCGCACACTTAGTG
100088447 TCGAACATAG
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 44 0.54
41 18 0.22
44 14 0.17
45 1 0.01
46 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (39 bp):
TCGCACACTTAGTGCTATTTATAGCCGAAGCTATTCCAA
Found at i:100096859 original size:68 final size:68
Alignment explanation
Indices: 100096784--100096920 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
100096774 CTTCTCAAAT
100096784 GGCTCGATGTATGCCATATTCATCACCCTCTATGCCTTTTAGAACATTTTTTTAGCAAAGCCAAT
1 GGCTCGATGTATGCCATATTCATCACCCTCTATGCCTTTTAGAACATTTTTTTAGCAAAGCCAAT
100096849 GAA
66 GAA
100096852 GGCTCGATGTATGCCATATTCATCACCCTCTATGCCTTTTAGAACATTTTTTTAGCAAAGCCAAT
1 GGCTCGATGTATGCCATATTCATCACCCTCTATGCCTTTTAGAACATTTTTTTAGCAAAGCCAAT
100096917 GAA
66 GAA
100096920 G
1 G
100096921 AAAAGTACAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (68 bp):
GGCTCGATGTATGCCATATTCATCACCCTCTATGCCTTTTAGAACATTTTTTTAGCAAAGCCAAT
GAA
Found at i:100098809 original size:39 final size:39
Alignment explanation
Indices: 100098700--100098885 Score: 282
Period size: 39 Copynumber: 4.7 Consensus size: 39
100098690 TCATTCAAAC
* * * * * *
100098700 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
100098740 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
100098780 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
100098819 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
100098858 GCCTTCGGGCTTAGCCTGGATATCACAA
1 GCCTTCGGGCTTAGCCCGGATATCACAA
100098886 TTCACACATT
Statistics
Matches: 137, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 95 0.69
40 42 0.31
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:100106767 original size:39 final size:39
Alignment explanation
Indices: 100106616--100106769 Score: 211
Period size: 39 Copynumber: 3.9 Consensus size: 39
100106606 TCGTTCAAAC
* * * * * *
100106616 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
100106656 GCCTTCGGGACTTAACCCGGATATCACAACT-GCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
100106695 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
100106734 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
100106770 TTCATACACA
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
38 20 0.19
39 59 0.57
40 25 0.24
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:100109780 original size:80 final size:80
Alignment explanation
Indices: 100109696--100109844 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
100109686 TATGGTAACC
* * * *
100109696 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
100109760 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
100109776 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
100109841 CCGG
66 CCGG
100109845 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:100109786 original size:40 final size:38
Alignment explanation
Indices: 100109737--100109844 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
100109727 ATCACGATTT
*
100109737 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
100109777 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
100109817 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
100109845 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:100113378 original size:47 final size:47
Alignment explanation
Indices: 100113320--100113535 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
100113310 CATACATTCG
* * * *
100113320 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100113367 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100113414 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
100113461 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
100113508 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
100113536 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:100113430 original size:94 final size:94
Alignment explanation
Indices: 100113320--100113561 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
100113310 CATACATTCG
*
100113320 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
100113385 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
100113414 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
100113479 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
100113508 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
100113562 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:100116756 original size:24 final size:25
Alignment explanation
Indices: 100116720--100116769 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
100116710 AAAGAACTCG
100116720 CACACACACAGTGCTC-TAATCATT
1 CACACACACAGTGCTCTTAATCATT
* *
100116744 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
100116769 C
1 C
100116770 TTTATTACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Done.