Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 322 of 425
Found at i:100354312 original size:25 final size:24
Alignment explanation
Indices: 100354284--100354339 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
100354274 GTTATATTTT
*
100354284 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
100354309 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
100354332 CACTATTA
1 CACTATTA
100354340 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:100366295 original size:72 final size:71
Alignment explanation
Indices: 100366209--100366627 Score: 500
Period size: 72 Copynumber: 5.8 Consensus size: 71
100366199 ATTTTGATGT
* *
100366209 TTTTATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
1 TTTTATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
100366274 AGGTAA
66 AGGTAA
* * **
100366280 GTTTTATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACATT
1 -TTTTATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
100366345 GAGGTAA
65 GAGGTAA
* * *
100366352 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGCT
1 TTT-TATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
100366417 GAGGT-A
65 GAGGTAA
* * ** *
100366423 TTTTCAATTTCTGTTTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTT--ATTTCTG-TTTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
*
100366488 CAAGCTGAGGTAA
59 CACGCTGAGGTAA
* * * *
100366501 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTT
1 TTT-TATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
100366566 GAGGT-A
65 GAGGTAA
* * * **
100366572 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
1 TTTT--ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
100366628 GGTTCACATG
Statistics
Matches: 300, Mismatches: 35, Indels: 24
0.84 0.10 0.07
Matches are distributed among these distances:
71 11 0.04
72 222 0.74
73 5 0.02
76 5 0.02
77 53 0.18
78 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (71 bp):
TTTTATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
AGGTAA
Found at i:100366527 original size:149 final size:146
Alignment explanation
Indices: 100366213--100367052 Score: 809
Period size: 149 Copynumber: 5.6 Consensus size: 146
100366203 TGATGTTTTT
* *
100366213 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* * * ** *
100366278 AAGTTTT--ATTTCT-ATTTTC-AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGA
66 -A-TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
100366339 CACA-TTGAGGTAATTTCA
129 CA-AGCTGAGGTAATTTCA
* *
100366357 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
*
100366422 ATTTTCAATTTCTGTTTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 ATTTTCAATTTCTGTTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
100366487 ACAAGCTGAGGTAATTTCA
128 ACAAGCTGAGGTAATTTCA
* * *
100366506 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* *
100366571 ATTTTCAATTTATG-TTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTC
66 ATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* * * *
100366633 ACATGCTAAGATATTTTCA
128 ACAAGCTGAGGTAATTTCA
* * ** ** *
100366652 ATTTCTATCTTTCAAAAAAAATT-AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 ATTTCTGT-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
** * * **
100366716 GAGGTATTGGCAATTTTTGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGA
61 GAGGTATTTTCAATTTCTGTTT-TTCA---A------AAAA-TCAACTCATATTGCGAGAGGTGA
* * * *
100366781 GTTGAGCCTCAAGATACGTTGAGGTAATTTCA
115 GTTGAGCCTCAGGACAAGCTGAGGTAATTTCA
* *
100366813 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* * *
100366878 GTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG
64 GTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
100366943 ACACGCTGTGGTAATTTCA
128 ACAAGCTGAGGTAATTTCA
** * **** * * *
100366962 ATTT-TGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGCAACTTGAGCCTTAGGTCACACGCT
1 ATTTCTGTT-T--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCT
*
100367026 GAGGTATTTTCAATTTCCGTTTTTCAA
61 GAGGTATTTTCAATTTCTGTTTTTCAA
100367053 TTTCTGCCTT
Statistics
Matches: 578, Mismatches: 81, Indels: 68
0.80 0.11 0.09
Matches are distributed among these distances:
142 4 0.01
143 3 0.01
144 103 0.18
145 5 0.01
146 22 0.04
147 4 0.01
148 10 0.02
149 211 0.37
150 54 0.09
151 36 0.06
152 2 0.00
156 2 0.00
158 9 0.02
159 54 0.09
160 4 0.01
161 20 0.03
162 4 0.01
163 30 0.05
164 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (146 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
ATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
AGCTGAGGTAATTTCA
Found at i:100366621 original size:221 final size:221
Alignment explanation
Indices: 100366225--100366998 Score: 961
Period size: 221 Copynumber: 3.4 Consensus size: 221
100366215 TTCTATTTTC
* ** * *
100366225 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAGTTTT--ATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA-TTTTCAATT
* * *
100366288 TCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAAT
65 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
* *
100366353 TTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGCTG
130 TTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
*
100366418 AGGTATTTTCAATTTCTGTTTTTCAAAA
195 AGGTATTTTCAATTTCTGTCTTTC-AAA
* *
100366446 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTAA-TTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTCAATTT
* * *
100366510 CTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTTGAGGTATTT
66 CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATT
* * ** *
100366575 TCAATTTATGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGC
131 TCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGC
* * *
100366639 TAAGATATTTTCAATTTCTATCTTTCAAA
193 TGAGGTATTTTCAATTTCTGTCTTTCAAA
* * * *
100366668 AAAAATTAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGGCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG---T---AA----
* *
100366733 TGTTTCTTAATTTATG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATA
56 T-TTTC--AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
100366797 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
118 CGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
*
100366862 CTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTC-AA
181 CTCAAGACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAA
* *
100366902 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGTGGTAA-TTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTCAATTT
** *
100366966 -TGTTGTAAAAAAAAATCAACTCATATTGCGAGA
66 CTGTT-T--TCAAAATTCAACTCATATTGCGAGA
100366999 GGCAACTTGA
Statistics
Matches: 474, Mismatches: 53, Indels: 50
0.82 0.09 0.09
Matches are distributed among these distances:
219 5 0.01
220 7 0.01
221 160 0.34
222 53 0.11
223 49 0.10
225 1 0.00
228 4 0.01
231 1 0.00
234 52 0.11
235 99 0.21
236 7 0.01
237 35 0.07
238 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (221 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTCAATTT
CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATT
TCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGA
GGTATTTTCAATTTCTGTCTTTCAAA
Found at i:100366822 original size:85 final size:75
Alignment explanation
Indices: 100366753--100367048 Score: 346
Period size: 74 Copynumber: 3.9 Consensus size: 75
100366743 TTTATGTTTC
* *
100366753 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
100366818 TGTTTTCAAA
66 TGTTTTCAAA
* * *
100366828 AAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
100366892 TGTCTTTCAAA
66 TGT-TTTCAAA
* ** * *
100366903 AAAA-TCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGTGGTAATTTCAATTT-
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
100366966 TGTTGTAAAA
66 TGTTTTCAAA
* **** * * * *
100366976 AAAAATCAACTCATATTGCGAGAGGCAACTTGAGCCTTAGGTCACACGCTGAGGTATTTTCAATT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATT
*
100367041 TCCGTTTT
64 TCTGTTTT
100367049 TCAATTTCTG
Statistics
Matches: 193, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
73 9 0.05
74 92 0.48
75 67 0.35
76 21 0.11
77 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (75 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAA
Found at i:100367012 original size:74 final size:73
Alignment explanation
Indices: 100366753--100366998 Score: 348
Period size: 74 Copynumber: 3.3 Consensus size: 73
100366743 TTTATGTTTC
* * *
100366753 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT-
100366818 TGTTTTCAA
65 TGTTTTCAA
* *
100366827 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA-TTT
100366892 TGTCTTTCAA
65 TGT-TTTCAA
* ** * *
100366902 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGTGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
**
100366967 GTTGTAAAA
66 GTT-TTCAA
100366976 AAAAATCAACTCATATTGCGAGA
1 AAAAATCAACTCATATTGCGAGA
100366999 GGCAACTTGA
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
73 1 0.01
74 90 0.58
75 63 0.41
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
GTTTTCAA
Found at i:100367081 original size:95 final size:88
Alignment explanation
Indices: 100366972--100367224 Score: 246
Period size: 95 Copynumber: 2.8 Consensus size: 88
100366962 ATTTTGTTGT
100366972 AAAAAAAAATCAACTCATATTGCGAGAGGCAACTTGAGCCTTAGGTCACACGCTGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGG-AA-TTGAGCCTT-GGTCACACGCTGAGGTATTTTC
* * **
100367037 AATTTCCGTTTTTCAATTTCTGCCTTTC
63 AATTTCCGCTTTTCAAGTTAAG--TTTC
* **
100367065 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGAGTCACA-TATCGAGGTATT
1 --AAAAAAAAATCAACTCATATTGCGAGA-G-GAATTGAGCCTTG-GTCACACGCT-GAGGTATT
** *
100367129 TTCAAAATCTGCTTTTCAAGTTAAGTTTC
60 TTCAATTTCCGCTTTTCAAGTTAAGTTTC
*
100367158 ----AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGA-A-TTGAGCCTTGG-TCACACGCTGAGGTATTTTC
100367219 AATTTC
63 AATTTC
100367225 TATTTTTAGA
Statistics
Matches: 134, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 51 0.38
88 1 0.01
93 4 0.03
94 2 0.01
95 67 0.50
96 3 0.02
97 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (88 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGAATTGAGCCTTGGTCACACGCTGAGGTATTTTCAAT
TTCCGCTTTTCAAGTTAAGTTTC
Found at i:100369260 original size:19 final size:19
Alignment explanation
Indices: 100369236--100369272 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
100369226 CTATTTTATA
*
100369236 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
100369255 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
100369273 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:100369379 original size:20 final size:20
Alignment explanation
Indices: 100369277--100369382 Score: 64
Period size: 20 Copynumber: 5.2 Consensus size: 20
100369267 ATCATTATTA
*
100369277 TTTATATATATATGTATGTA-
1 TTTATATAT-TATGTATATAT
*
100369297 TTTATATAGCGTATG-A-ATAGT
1 TTTATATA--TTATGTATATA-T
100369318 TTT-TATATTAT-TATA-AT
1 TTTATATATTATGTATATAT
100369335 TTCTAATATATATAT-TATATGTAT
1 TT-T-ATATAT-TATGTATA--TAT
100369359 TTTATATATTATGTATATAT
1 TTTATATATTATGTATATAT
100369379 TTTA
1 TTTA
100369383 ATGTTATTAG
Statistics
Matches: 69, Mismatches: 3, Indels: 28
0.69 0.03 0.28
Matches are distributed among these distances:
17 3 0.04
18 6 0.09
19 3 0.04
20 25 0.36
21 17 0.25
22 10 0.14
23 1 0.01
24 4 0.06
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTATATATTATGTATATAT
Found at i:100369461 original size:24 final size:24
Alignment explanation
Indices: 100369434--100369479 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
100369424 ATATTTTTTT
*
100369434 ATATCATCTTATGTACATATATAA
1 ATATCATCTTATATACATATATAA
* *
100369458 ATATTATGTTATATACATATAT
1 ATATCATCTTATATACATATAT
100369480 GCAATATGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (24 bp):
ATATCATCTTATATACATATATAA
Found at i:100369811 original size:25 final size:24
Alignment explanation
Indices: 100369783--100369838 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
100369773 GTTATATTTT
*
100369783 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
100369808 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
100369831 CACTATTA
1 CACTATTA
100369839 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:100369856 original size:2 final size:2
Alignment explanation
Indices: 100369844--100369884 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
100369834 TATTACTATT
* *
100369844 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100369885 TTTACGTAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:100372755 original size:12 final size:12
Alignment explanation
Indices: 100372738--100372762 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100372728 CACAACATGC
100372738 ATGGTATTAAAA
1 ATGGTATTAAAA
100372750 ATGGTATTAAAA
1 ATGGTATTAAAA
100372762 A
1 A
100372763 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:100372932 original size:3 final size:3
Alignment explanation
Indices: 100372926--100372964 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
100372916 ACACTACTAT
* *
100372926 ATA ATA ATA ATA ATA GTG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
100372965 TAGAAATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:100373026 original size:2 final size:2
Alignment explanation
Indices: 100373019--100373048 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
100373009 AAAGTAATGT
*
100373019 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100373049 CGTGTATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:100373087 original size:10 final size:10
Alignment explanation
Indices: 100373060--100373176 Score: 66
Period size: 12 Copynumber: 11.3 Consensus size: 10
100373050 GTGTATGTAC
*
100373060 ATAAAAATAT
1 ATAATAATAT
* *
100373070 ACACTAATAT
1 ATAATAATAT
100373080 ATAATAATA-
1 ATAATAATAT
*
100373089 ATAGTAATA-
1 ATAATAATAT
100373098 ATAATAATAT
1 ATAATAATAT
100373108 -TAA-AAGCTAT
1 ATAATAA--TAT
100373118 -TAATAATACT
1 ATAATAATA-T
100373128 AT-ATAATAT
1 ATAATAATAT
100373137 AATATATATATAT
1 -ATA-ATA-ATAT
100373150 ATATATATATAT
1 ATA-ATA-ATAT
100373162 ATATATATATAT
1 ATA-ATA-ATAT
100373174 ATA
1 ATA
100373177 TAAGCATCAA
Statistics
Matches: 90, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
8 2 0.02
9 22 0.24
10 29 0.32
11 3 0.03
12 30 0.33
13 4 0.04
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (10 bp):
ATAATAATAT
Found at i:100373142 original size:12 final size:12
Alignment explanation
Indices: 100373074--100373179 Score: 67
Period size: 14 Copynumber: 8.2 Consensus size: 12
100373064 AAATATACAC
100373074 TAATATATAATAA
1 TAATATATAAT-A
100373087 TAATAGTAATAATAA
1 TAATA-T-ATAAT-A
100373102 TAATAT-TAA-A
1 TAATATATAATA
*
100373112 -AGCTAT-TAATAA
1 TA-ATATATAAT-A
*
100373124 TACTATATAATA
1 TAATATATAATA
100373136 TAATATATATATA
1 TAATATATA-ATA
100373149 TATATATATATATA
1 TA-ATATATA-ATA
100373163 TATATATATATATA
1 TA-ATATATA-ATA
100373177 TAA
1 TAA
100373180 GCATCAAATA
Statistics
Matches: 82, Mismatches: 2, Indels: 18
0.80 0.02 0.18
Matches are distributed among these distances:
9 1 0.01
10 7 0.09
12 17 0.21
13 16 0.20
14 29 0.35
15 12 0.15
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (12 bp):
TAATATATAATA
Found at i:100373143 original size:2 final size:2
Alignment explanation
Indices: 100373127--100373178 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
100373117 TTAATAATAC
100373127 TA TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100373167 TA TA TA TA TA TA
1 TA TA TA TA TA TA
100373179 AGCATCAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:100374661 original size:42 final size:42
Alignment explanation
Indices: 100374550--100374677 Score: 195
Period size: 42 Copynumber: 3.1 Consensus size: 42
100374540 AGACACGTGA
* *
100374550 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTACTGTAG
* * *
100374592 CTTCGCTTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTACTGTAG
*
100374633 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTACTGTGG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTACTGTAG
100374675 CTT
1 CTT
100374678 TTAGCTGCTC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
41 37 0.49
42 39 0.51
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTACTGTAG
Found at i:100374827 original size:42 final size:44
Alignment explanation
Indices: 100374720--100374839 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 44
100374710 TATTTGATTT
* * *
100374720 TCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCA
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
** * * *
100374764 TTGATCTGTTTCCCTACTGCTTAGGGGTTT-A-GATCTGTAAAC-
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTAAACA
100374806 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
100374840 TTTGAAAATT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.46
43 7 0.11
44 26 0.43
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
Found at i:100374891 original size:86 final size:86
Alignment explanation
Indices: 100374719--100374930 Score: 223
Period size: 86 Copynumber: 2.5 Consensus size: 86
100374709 ATATTTGATT
** *
100374719 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAAT-ATTGATCTGTTACCCTACTGC
** * *
100374784 TTAGGGGTTTAGATCTGTAAAC
65 TTAGGGAATAAGATCTATAAAC
* * * *
100374806 -TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAA-ATTTG-GCTTGTTACCCTATTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATA-TTGATC-TGTTACCCTACTG
*
100374868 CTTAGGGCAATAATATCTATAAAC
64 CTTAGGG-AATAAGATCTATAAAC
* * * *
100374892 TTCAGCTTGTTACCCTATTGCTTAGGGGGTTAAAGCTTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG
100374931 GTGGTTTGAA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
84 2 0.02
85 21 0.20
86 48 0.47
87 32 0.31
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATATTGATCTGTTACCCTACTGCT
TAGGGAATAAGATCTATAAAC
Found at i:100375392 original size:43 final size:44
Alignment explanation
Indices: 100375323--100375409 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
100375313 GAGAGACGAA
* *
100375323 ATCTGTAATTTTTAGCCTATTACCCTACGGCTTAGGGGGTTAAG
1 ATCTGTAATATTTAACCTATTACCCTACGGCTTAGGGGGTTAAG
* * * *
100375367 ATCTGTAA-ATTTAACCTGTTACCCTACTGCTTATGGGTTTAAG
1 ATCTGTAATATTTAACCTATTACCCTACGGCTTAGGGGGTTAAG
100375410 GCTTGGTGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 29 0.78
44 8 0.22
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (44 bp):
ATCTGTAATATTTAACCTATTACCCTACGGCTTAGGGGGTTAAG
Found at i:100385876 original size:12 final size:12
Alignment explanation
Indices: 100385859--100385883 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100385849 CACAACATGC
100385859 ATGGTATTAAAA
1 ATGGTATTAAAA
100385871 ATGGTATTAAAA
1 ATGGTATTAAAA
100385883 A
1 A
100385884 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:100386055 original size:3 final size:3
Alignment explanation
Indices: 100386049--100386087 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
100386039 ACACTACTAT
* * *
100386049 ATA ATA ATA ATA ATA GTG ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
100386088 TAGAAATACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:100386216 original size:25 final size:24
Alignment explanation
Indices: 100386187--100386248 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
100386177 AAATATACAC
100386187 TAATATATAATAATGATAGTAATAA
1 TAATATATAATAA-GATAGTAATAA
* *
100386212 TAATAATATTAA-AAGCTATTAATAA
1 TAAT-ATA-TAATAAGATAGTAATAA
*
100386237 TACTATATAATA
1 TAATATATAATA
100386249 TAATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 3 0.10
24 4 0.13
25 16 0.52
26 5 0.16
27 3 0.10
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (24 bp):
TAATATATAATAAGATAGTAATAA
Found at i:100386256 original size:2 final size:2
Alignment explanation
Indices: 100386240--100386271 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
100386230 TTAATAATAC
100386240 TA TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100386272 AGCATCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:100386324 original size:23 final size:25
Alignment explanation
Indices: 100386282--100386332 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
100386272 AGCATCAAAT
100386282 AAAATAATAATAATAGAACACTAATA
1 AAAATAATAATAATA-AACACTAATA
*
100386308 AAAAT-ATAATAAT-AACAGTAATA
1 AAAATAATAATAATAAACACTAATA
100386331 AA
1 AA
100386333 TGTAATAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 11 0.46
25 8 0.33
26 5 0.21
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAATAATAATAATAAACACTAATA
Found at i:100390382 original size:21 final size:21
Alignment explanation
Indices: 100390358--100390415 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
100390348 TGTAAATTTT
*
100390358 CTTAAAAACTTAAAAAAAAAA
1 CTTAAAAAATTAAAAAAAAAA
*
100390379 CTTAAAAAATT-ATAAAAAAA
1 CTTAAAAAATTAAAAAAAAAA
*
100390399 TTATAAAAATATTAAAA
1 CT-TAAAAA-ATTAAAA
100390416 TTGATATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.30
21 16 0.53
22 3 0.10
23 2 0.07
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (21 bp):
CTTAAAAAATTAAAAAAAAAA
Found at i:100390385 original size:12 final size:13
Alignment explanation
Indices: 100390361--100390387 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100390351 AAATTTTCTT
100390361 AAAAACTTAAAAA
1 AAAAACTTAAAAA
100390374 AAAAACTTAAAAA
1 AAAAACTTAAAAA
100390387 A
1 A
100390388 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAACTTAAAAA
Found at i:100390394 original size:10 final size:10
Alignment explanation
Indices: 100390381--100390445 Score: 57
Period size: 11 Copynumber: 6.7 Consensus size: 10
100390371 AAAAAAAACT
100390381 TAAAAAATTA
1 TAAAAAATTA
100390391 TAAAAAAATTA
1 T-AAAAAATTA
100390402 T-AAAAA-TA
1 TAAAAAATTA
*
100390410 T-TAAAATTGA
1 TAAAAAATT-A
* *
100390420 TATAAATTTA
1 TAAAAAATTA
100390430 T-AAAAATTA
1 TAAAAAATTA
100390439 TAAAAAA
1 TAAAAAA
100390446 ATCTTAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
8 7 0.15
9 13 0.28
10 10 0.22
11 16 0.35
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:100390423 original size:20 final size:19
Alignment explanation
Indices: 100390400--100390454 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
100390390 ATAAAAAAAT
100390400 TATAAAAATATTAAAATTGA
1 TATAAAAATATTAAAATT-A
** *
100390420 TATAAATTTATAAAAATTA
1 TATAAAAATATTAAAATTA
* *
100390439 TAAAAAAATCTTAAAA
1 TATAAAAATATTAAAA
100390455 ATGTGAATCA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TATAAAAATATTAAAATTA
Found at i:100390441 original size:9 final size:9
Alignment explanation
Indices: 100390374--100390444 Score: 65
Period size: 9 Copynumber: 7.6 Consensus size: 9
100390364 AACTTAAAAA
100390374 AAAAACTTA-
1 AAAAA-TTAT
100390383 AAAAATTAT
1 AAAAATTAT
100390392 AAAAAAATTAT
1 --AAAAATTAT
100390403 AAAAA-TAT
1 AAAAATTAT
*
100390411 TAAAATTGAT
1 AAAAATT-AT
*
100390421 ATAAATTTAT
1 A-AAAATTAT
100390431 AAAAATTAT
1 AAAAATTAT
100390440 AAAAA
1 AAAAA
100390445 AATCTTAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
8 10 0.19
9 23 0.44
10 5 0.10
11 14 0.27
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:100390455 original size:20 final size:20
Alignment explanation
Indices: 100390357--100390456 Score: 58
Period size: 21 Copynumber: 4.5 Consensus size: 20
100390347 GTGTAAATTT
100390357 TCTTAAAAACTTAAAAAAAAA
1 TCTTAAAAA-TTAAAAAAAAA
* *
100390378 ACTTAAAAAATTATAAAAAAA
1 TCTT-AAAAATTAAAAAAAAA
100390399 T-TATAAAAATATTAAAATTGATATAAA
1 TCT-T-AAAA-ATTAAAA---A-A-AAA
* *
100390426 TTTATAAAAATTATAAAAAAA
1 TCT-TAAAAATTAAAAAAAAA
100390447 TCTTAAAAAT
1 TCTTAAAAAT
100390457 GTGAATCAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
20 8 0.12
21 24 0.38
22 12 0.19
23 1 0.02
25 1 0.02
26 7 0.11
27 8 0.12
28 3 0.05
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (20 bp):
TCTTAAAAATTAAAAAAAAA
Found at i:100390905 original size:25 final size:25
Alignment explanation
Indices: 100390871--100390931 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
100390861 CCACAATTAT
100390871 CGTTTTATTTAGGAAATATCAAGAC
1 CGTTTTATTTAGGAAATATCAAGAC
100390896 CGTTTTATTTAGGAAATATCAAGAC
1 CGTTTTATTTAGGAAATATCAAGAC
*
100390921 CATTTTATTTA
1 CGTTTTATTTA
100390932 ACATAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (25 bp):
CGTTTTATTTAGGAAATATCAAGAC
Found at i:100391022 original size:10 final size:10
Alignment explanation
Indices: 100391009--100391111 Score: 53
Period size: 10 Copynumber: 10.6 Consensus size: 10
100390999 TTTATTATGA
100391009 TTTTAATAAT
1 TTTTAATAAT
100391019 TTTT-AT-A-
1 TTTTAATAAT
100391026 TTTTAATGAACT
1 TTTTAAT-AA-T
100391038 TTTATAA-AAT
1 TTT-TAATAAT
*
100391048 TTTAAAT-AT
1 TTTTAATAAT
100391057 ATTTT-ATAA-
1 -TTTTAATAAT
*
100391066 TATTAATAAAT
1 TTTTAAT-AAT
*
100391077 TTTT-ATGAT
1 TTTTAATAAT
*
100391086 TTTTTATAAT
1 TTTTAATAAT
100391096 TGTTT-ATAAT
1 T-TTTAATAAT
100391106 TTTTAA
1 TTTTAA
100391112 GTTTATATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 30
0.67 0.06 0.28
Matches are distributed among these distances:
7 4 0.06
8 6 0.08
9 19 0.26
10 29 0.40
11 8 0.11
12 3 0.04
13 3 0.04
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:100391040 original size:18 final size:17
Alignment explanation
Indices: 100391003--100391043 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
100390993 TATGTATTTA
*
100391003 TTATGATTTTAATAATTT
1 TTAT-ATTTTAATAACTT
100391021 TTATATTTTAATGAACTT
1 TTATATTTTAAT-AACTT
100391039 TTATA
1 TTATA
100391044 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (17 bp):
TTATATTTTAATAACTT
Found at i:100391110 original size:19 final size:19
Alignment explanation
Indices: 100390998--100391110 Score: 63
Period size: 20 Copynumber: 5.8 Consensus size: 19
100390988 AATGTTATGT
* *
100390998 ATTTATTATGATTTTAAT-A
1 ATTT-TTATAATTTTTATAA
* *
100391017 ATTTTTAT-ATTTTAATGA
1 ATTTTTATAATTTTTATAA
* *
100391035 ACTTTTATAAAATTTTA-AA
1 ATTTTTAT-AATTTTTATAA
* *
100391054 TATATTTTATAATATTAATAA
1 -AT-TTTTATAATTTTTATAA
*
100391075 ATTTTTATGATTTTT-TATA
1 ATTTTTATAATTTTTATA-A
100391094 ATTGTTTATAATTTTTA
1 ATT-TTTATAATTTTTA
100391111 AGTTTATATA
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
17 8 0.11
18 14 0.19
19 19 0.26
20 24 0.33
21 8 0.11
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTTTATAATTTTTATAA
Found at i:100391243 original size:10 final size:10
Alignment explanation
Indices: 100391228--100391287 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
100391218 GTTAATAGAA
100391228 TTTATAATTT
1 TTTATAATTT
100391238 TTTAT-ATTT
1 TTTATAATTT
*
100391247 TTTATAATAT
1 TTTATAATTT
* ***
100391257 TATAGGTTTT
1 TTTATAATTT
100391267 TTTATAATTT
1 TTTATAATTT
*
100391277 TATATCAATTT
1 TTTAT-AATTT
100391288 AAATATTTTT
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
9 9 0.24
10 23 0.62
11 5 0.14
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTATAATTT
Found at i:100391252 original size:19 final size:19
Alignment explanation
Indices: 100391228--100391280 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
100391218 GTTAATAGAA
*
100391228 TTTATAATTTTTTA-TATTT
1 TTTATAATTTTATAGT-TTT
*
100391247 TTTATAATATTATAGGTTTT
1 TTTATAATTTTATA-GTTTT
100391267 TTTATAATTTTATA
1 TTTATAATTTTATA
100391281 TCAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 12 0.41
20 16 0.55
21 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTATAATTTTATAGTTTT
Found at i:100396877 original size:8 final size:8
Alignment explanation
Indices: 100396864--100396890 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
100396854 TAGGCCTGTC
100396864 ATCTTATG
1 ATCTTATG
100396872 ATCTTATG
1 ATCTTATG
100396880 ATCTTATG
1 ATCTTATG
100396888 ATC
1 ATC
100396891 CCATACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (8 bp):
ATCTTATG
Found at i:100399255 original size:26 final size:26
Alignment explanation
Indices: 100399218--100399301 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
100399208 TGATACAAAT
* *
100399218 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
100399244 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
100399270 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
100399296 TGATAA
1 TGATAA
100399302 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:100401023 original size:27 final size:27
Alignment explanation
Indices: 100400921--100401028 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
100400911 GAGGAAGCGT
* *
100400921 TCTGGTGGCTATGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
100400948 TCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAT-TATCTGTA
100400975 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
* * *
100401003 TCTAGTGACTCTGTCACATTATCTGT
1 TCTGGTGGCTCTGCCACATTATCTGT
100401029 TTTGGCAGCC
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.01
27 55 0.76
28 16 0.22
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATTATCTGTA
Found at i:100401026 original size:54 final size:54
Alignment explanation
Indices: 100400919--100401029 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
100400909 TGGAGGAAGC
* *
100400919 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT
* * * *
100400973 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTAGTGACTCTGCCACATATATCT
100401027 GTT
1 GTT
100401030 TTGGCAGCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT
Found at i:100402446 original size:96 final size:96
Alignment explanation
Indices: 100402282--100402476 Score: 390
Period size: 96 Copynumber: 2.0 Consensus size: 96
100402272 TAGTTGGTTG
100402282 TAGCAGTTGAGGTTATTTACAATTGTTAGCTGAGTTTTTATGTATATAAGAACTCTTCTCTCATT
1 TAGCAGTTGAGGTTATTTACAATTGTTAGCTGAGTTTTTATGTATATAAGAACTCTTCTCTCATT
100402347 ATCATACTTAGACTTAATGAGAAGAATTGTT
66 ATCATACTTAGACTTAATGAGAAGAATTGTT
100402378 TAGCAGTTGAGGTTATTTACAATTGTTAGCTGAGTTTTTATGTATATAAGAACTCTTCTCTCATT
1 TAGCAGTTGAGGTTATTTACAATTGTTAGCTGAGTTTTTATGTATATAAGAACTCTTCTCTCATT
100402443 ATCATACTTAGACTTAATGAGAAGAATTGTT
66 ATCATACTTAGACTTAATGAGAAGAATTGTT
100402474 TAG
1 TAG
100402477 TTTATTCTTG
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 99 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (96 bp):
TAGCAGTTGAGGTTATTTACAATTGTTAGCTGAGTTTTTATGTATATAAGAACTCTTCTCTCATT
ATCATACTTAGACTTAATGAGAAGAATTGTT
Found at i:100407068 original size:25 final size:24
Alignment explanation
Indices: 100407025--100407145 Score: 125
Period size: 25 Copynumber: 4.8 Consensus size: 24
100407015 ACGAGCTGTA
* * *
100407025 AACGGAAAGCTCCTTCGAGCTGAAT
1 AACGG-AAGCTCATACGAGCTAAAT
*
100407050 AACTGGAAGCTCATGCGAGCTAAAT
1 AAC-GGAAGCTCATACGAGCTAAAT
*
100407075 AACGGGAAGCTCATGCGAGCTAAAT
1 AAC-GGAAGCTCATACGAGCTAAAT
* *
100407100 AACAAGAAGCTCATACGAGCTATAT
1 AAC-GGAAGCTCATACGAGCTAAAT
*
100407125 ATCGAGAAGCTCATACGAGCT
1 AACG-GAAGCTCATACGAGCT
100407146 GTGGTGTATC
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
25 82 0.98
26 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (24 bp):
AACGGAAGCTCATACGAGCTAAAT
Found at i:100407094 original size:50 final size:50
Alignment explanation
Indices: 100407025--100407146 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
100407015 ACGAGCTGTA
* * * ** *
100407025 AACGGAAAGCTCCTTCGAGCTGAATAACTGGAAGCTCATGCGAGCTAAAT
1 AACGGGAAGCTCATACGAGCTGAATAACAAGAAGCTCATACGAGCTAAAT
* * *
100407075 AACGGGAAGCTCATGCGAGCTAAATAACAAGAAGCTCATACGAGCTATAT
1 AACGGGAAGCTCATACGAGCTGAATAACAAGAAGCTCATACGAGCTAAAT
* *
100407125 ATCGAGAAGCTCATACGAGCTG
1 AACGGGAAGCTCATACGAGCTG
100407147 TGGTGTATCC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (50 bp):
AACGGGAAGCTCATACGAGCTGAATAACAAGAAGCTCATACGAGCTAAAT
Found at i:100407336 original size:22 final size:21
Alignment explanation
Indices: 100407286--100407338 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
100407276 TTATGGCCAT
100407286 TGTACAATTTACAAACAATAAA
1 TGTACAATTTA-AAACAATAAA
*
100407308 --T-CAATTTAACACATATAAA
1 TGTACAATTTAAAACA-ATAAA
100407327 TGTACAATTTAA
1 TGTACAATTTAA
100407339 TTATACGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 1 0.04
21 1 0.04
22 8 0.31
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (21 bp):
TGTACAATTTAAAACAATAAA
Found at i:100409898 original size:2 final size:2
Alignment explanation
Indices: 100409886--100409917 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
100409876 TCGCATTCAG
100409886 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A
100409918 AGTAGCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:100417102 original size:17 final size:17
Alignment explanation
Indices: 100417060--100417103 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
100417050 CAAAATTATG
*
100417060 GGCCCACATGCCCGTGT
1 GGCCCACACGCCCGTGT
*
100417077 GGACCCACACGTCCGTGT
1 GG-CCCACACGCCCGTGT
100417095 GGCCCACAC
1 GGCCCACAC
100417104 AACCACACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.16, C:0.43, G:0.27, T:0.14
Consensus pattern (17 bp):
GGCCCACACGCCCGTGT
Found at i:100418671 original size:15 final size:16
Alignment explanation
Indices: 100418642--100418677 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
100418632 CAAGAAACCC
100418642 AAAAACACAATAAGAG
1 AAAAACACAATAAGAG
*
100418658 AAAAATACAA-AAGAG
1 AAAAACACAATAAGAG
100418673 AAAAA
1 AAAAA
100418678 GATAATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.75, C:0.08, G:0.11, T:0.06
Consensus pattern (16 bp):
AAAAACACAATAAGAG
Found at i:100420720 original size:15 final size:15
Alignment explanation
Indices: 100420697--100420738 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
100420687 AATTTTAAAG
100420697 AAATGTGATTA-TATA
1 AAATGTGATTATTA-A
*
100420712 AAATATGATTATTAA
1 AAATGTGATTATTAA
100420727 AAATGTGATTAT
1 AAATGTGATTAT
100420739 CGAGAATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 22 0.92
16 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (15 bp):
AAATGTGATTATTAA
Found at i:100430242 original size:29 final size:28
Alignment explanation
Indices: 100430197--100430252 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
100430187 TTTCAATTTC
* *
100430197 AAAATTAAGTAAATTAATTTCTTTCAAA
1 AAAATTAAGTAAATTAATCTCTATCAAA
*
100430225 AAAATTAGAGTAACTTAATCTCTATCAA
1 AAAATTA-AGTAAATTAATCTCTATCAA
100430253 TTTCGAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (28 bp):
AAAATTAAGTAAATTAATCTCTATCAAA
Found at i:100431585 original size:2 final size:2
Alignment explanation
Indices: 100431578--100431602 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
100431568 ATAACATTGA
100431578 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
100431603 GATTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:100433708 original size:16 final size:16
Alignment explanation
Indices: 100433687--100433720 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
100433677 TAGGAGAAAA
100433687 AACCCGATATTTATGG
1 AACCCGATATTTATGG
100433703 AACCCGATATTTATGG
1 AACCCGATATTTATGG
100433719 AA
1 AA
100433721 ATACATCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (16 bp):
AACCCGATATTTATGG
Found at i:100438298 original size:19 final size:19
Alignment explanation
Indices: 100438274--100438371 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
100438264 AATCTTTAAG
100438274 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
100438293 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
100438312 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
100438329 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
100438348 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
100438369 GAT
1 GAT
100438372 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:100438321 original size:36 final size:37
Alignment explanation
Indices: 100438274--100438371 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
100438264 AATCTTTAAG
*
100438274 GATATGCAATCTTAGATATGATATGCAATTTTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
100438312 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
100438348 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
100438372 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:100444010 original size:12 final size:12
Alignment explanation
Indices: 100443989--100444020 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
100443979 CTTCTATCTC
100443989 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
100444001 AAAAAGAAAAAG
1 AAAAAAAAAAAG
100444013 AAAAAAAA
1 AAAAAAAA
100444021 GAAAAAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:100444019 original size:15 final size:14
Alignment explanation
Indices: 100443992--100444027 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
100443982 CTATCTCAAA
100443992 AAAAAAAAGAAAAAG
1 AAAAAAAA-AAAAAG
100444007 AAAAAGAAAAAAAAG
1 AAAAA-AAAAAAAAG
100444022 AAAAAA
1 AAAAAA
100444028 TAGAGAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 16 0.80
16 3 0.15
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:100444953 original size:44 final size:44
Alignment explanation
Indices: 100444893--100445821 Score: 608
Period size: 44 Copynumber: 21.3 Consensus size: 44
100444883 CAGAGAAACA
* *
100444893 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * ** **
100444937 AGATCTGACA-CTCCTGTGCTTACAGCAAAACAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAG-GGAACAGATCGAAGATAGC
*
100444982 AGCATC--GCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATCTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
100445025 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * ** * **
100445069 AGATCTGACA-CTCCTGTGCTTATAGCAAAGTAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
100445114 AG-TATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGACAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
100445157 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * **
100445201 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
100445246 AG--CATGGCATCCTTGTTTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
100445289 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
** * * * **
100445333 AGATCTAACA-CTCCTGTGATTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
100445378 AG--CATGGCATCCCTATGTTTATAAGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
100445421 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
100445465 AGATCTGACATTCTTGTGATTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
100445510 AGGA--TGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGC
1 A-GATCTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
100445553 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATGGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
** * ** * * * *
100445597 AGATCTAACATCTCC---ATTTCGACGG-AGAG-TAGATACATAGC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAACAGATCGA-AGATAGC
** * * * ** *
100445638 AGATCTAACCT-TCAGATGATTT-TATTGAAGCAGATCCAAGAT---
1 AGATCTGGCATCCCTG-TG-TTTATAGGGAA-CAGATCGAAGATAGC
* * * * **
100445680 -GATTTGGCATCCTTGTGTTTATAGGGAACAAATCAAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * *
100445723 AG--CATGGCATTCCTGTGTTTATAGGGAACA-AGTTGAAGATAAC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
100445766 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
*
100445810 AGATCTGACATC
1 AGATCTGGCATC
100445822 TCTATTTCGA
Statistics
Matches: 677, Mismatches: 151, Indels: 114
0.72 0.16 0.12
Matches are distributed among these distances:
39 1 0.00
40 16 0.02
41 31 0.05
42 17 0.03
43 100 0.15
44 417 0.62
45 88 0.13
46 7 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:100445130 original size:132 final size:132
Alignment explanation
Indices: 100444893--100445611 Score: 1195
Period size: 132 Copynumber: 5.4 Consensus size: 132
100444883 CAGAGAAACA
* *
100444893 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
100444958 ACAGCAAAACAGATCGAAGATTTCAGCATCGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
100445023 GC
131 GC
*
100445025 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * * *
100445090 ATAGCAAAGTAGATCGAAGATTTCAGTATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
100445155 GC
131 GC
* *
100445157 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
100445222 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCTTGTTTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
100445287 GC
131 GC
* *
100445289 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
100445354 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
100445419 GC
131 GC
* * *
100445421 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCTTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
100445486 ACAGCGAAGCAGATCGAAGATTTCAGGATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
100445551 GC
131 GC
* *
100445553 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATGGAAGATAGCAGATCTAACATCTCC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACA-CTCC
100445612 ATTTCGACGG
Statistics
Matches: 554, Mismatches: 32, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
132 552 1.00
133 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:100445749 original size:213 final size:213
Alignment explanation
Indices: 100445502--100445931 Score: 743
Period size: 213 Copynumber: 2.0 Consensus size: 213
100445492 AAGCAGATCG
* *
100445502 AAGATTTCAGGATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCC
1 AAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAACAGATTTGGCATCCC
* * *
100445567 TGTGTTTATAGGGAACAAATGGAAGATAGCAGATCTAACATCTCCATTTCGACGGAGAGTAGATA
66 TGTGTTTATAGGGAACAAATCGAAGATAACAGATCTAACATCTCCATTTCGACAGAGAGTAGATA
100445632 CATAGCAGATCTAACCTTCAGATGATTTTATTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
131 CATAGCAGATCTAACCTTCAGATGATTTTATTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
* *
100445697 TTTATAGGGAACAAATCA
196 TTTACAAGGAACAAATCA
* *
100445715 AAGATTTCAGCATGGCATTCCTGTGTTTATAGGGAACAAGTTGAAGATAACAGATTTGGCATCCC
1 AAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAACAGATTTGGCATCCC
* *
100445780 TGTGTTTATAGGGAACAAATCGAAGATAACAGATCTGACATCTCTATTTCGACAGAGAGTAGATA
66 TGTGTTTATAGGGAACAAATCGAAGATAACAGATCTAACATCTCCATTTCGACAGAGAGTAGATA
100445845 CATAGCAGATCTAACCTTCAGATGATTTTATTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
131 CATAGCAGATCTAACCTTCAGATGATTTTATTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
* *
100445910 TTTACAAGGAGCAAATCG
196 TTTACAAGGAACAAATCA
100445928 AAGA
1 AAGA
100445932 CACAGGAGAT
Statistics
Matches: 204, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
213 204 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (213 bp):
AAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAACAGATTTGGCATCCC
TGTGTTTATAGGGAACAAATCGAAGATAACAGATCTAACATCTCCATTTCGACAGAGAGTAGATA
CATAGCAGATCTAACCTTCAGATGATTTTATTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
TTTACAAGGAACAAATCA
Found at i:100449955 original size:18 final size:19
Alignment explanation
Indices: 100449925--100449963 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
100449915 CCTCAATGCC
*
100449925 AAAACATAAATAAAACCAT
1 AAAACATAAATAAAACAAT
100449944 AAAACA-AAATAAAACAAT
1 AAAACATAAATAAAACAAT
100449962 AA
1 AA
100449964 TAGCAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (19 bp):
AAAACATAAATAAAACAAT
Found at i:100460267 original size:2 final size:2
Alignment explanation
Indices: 100460260--100460291 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100460250 ATTGTGAAAT
100460260 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100460292 AGAATTAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100462072 original size:44 final size:42
Alignment explanation
Indices: 100462016--100462224 Score: 187
Period size: 44 Copynumber: 4.9 Consensus size: 42
100462006 TTTTTATATG
*
100462016 TGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
1 TGATTTACATGTAAGACCACGTCTGGGACGTTGGCATCAATT
* *
100462057 TGAGATTTACATGTAAGACCACGTTTAGGACGTTGGCATCAATT
1 T--GATTTACATGTAAGACCACGTCTGGGACGTTGGCATCAATT
* * * *
100462101 TGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCATTGC-ATT
1 T--GATTTACATGTAAGACCACGTCTGGGACGTTGGCA-T-CAATT
* * *
100462146 TGATTT-CGTATAAGACC-CTGTCTGGGACAG-TGGCATCGATACT
1 TGATTTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATC-A-ATT
*
100462189 TGA-TTACATGTAAGACCACGTCTGAGACGTTGGCAT
1 TGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
100462225 TTTACGAGCT
Statistics
Matches: 138, Mismatches: 17, Indels: 24
0.77 0.09 0.13
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 26 0.19
43 38 0.28
44 65 0.47
45 5 0.04
46 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTTACATGTAAGACCACGTCTGGGACGTTGGCATCAATT
Found at i:100469764 original size:16 final size:16
Alignment explanation
Indices: 100469743--100469790 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
100469733 AAGTTTAATC
100469743 ACATCAAATTATTTTA
1 ACATCAAATTATTTTA
* ** *
100469759 ACATCAAGTT-TAATC
1 ACATCAAATTATTTTA
100469774 ACATCAAATTATTTTA
1 ACATCAAATTATTTTA
100469790 A
1 A
100469791 ACAATCATTT
Statistics
Matches: 23, Mismatches: 8, Indels: 2
0.70 0.24 0.06
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.40
Consensus pattern (16 bp):
ACATCAAATTATTTTA
Found at i:100469766 original size:31 final size:31
Alignment explanation
Indices: 100469730--100469790 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
100469720 TTCACACATA
100469730 ATCAAGTTTAATCACATCAAATTATTTTAAC
1 ATCAAGTTTAATCACATCAAATTATTTTAAC
100469761 ATCAAGTTTAATCACATCAAATTATTTTAA
1 ATCAAGTTTAATCACATCAAATTATTTTAA
100469791 ACAATCATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (31 bp):
ATCAAGTTTAATCACATCAAATTATTTTAAC
Found at i:100469779 original size:15 final size:15
Alignment explanation
Indices: 100469730--100469780 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
100469720 TTCACACATA
100469730 ATCAAGTTTAATCAC
1 ATCAAGTTTAATCAC
* ** *
100469745 ATCAAATTATTTTAAC
1 ATCAAGTT-TAATCAC
100469761 ATCAAGTTTAATCAC
1 ATCAAGTTTAATCAC
100469776 ATCAA
1 ATCAA
100469781 ATTATTTTAA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (15 bp):
ATCAAGTTTAATCAC
Found at i:100473518 original size:37 final size:37
Alignment explanation
Indices: 100473475--100473557 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
100473465 GTCCGACTAT
*
100473475 CCCTACACACCATATAGGGCATTAAATACATATCCAA
1 CCCTACACACCATATAGGGCATTAAATACACATCCAA
* *
100473512 CCCTACACACCATATAGGGTATTAAATACCCATCCAA
1 CCCTACACACCATATAGGGCATTAAATACACATCCAA
100473549 CCCTACACA
1 CCCTACACA
100473558 ACTTTTAGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.39, C:0.34, G:0.07, T:0.20
Consensus pattern (37 bp):
CCCTACACACCATATAGGGCATTAAATACACATCCAA
Found at i:100473815 original size:21 final size:22
Alignment explanation
Indices: 100473791--100473837 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
100473781 AGGTCATGCT
100473791 TAACGA-ATAGCAGATCATACA
1 TAACGATATAGCAGATCATACA
**
100473812 TAAC-ATATTTCAGATCATACA
1 TAACGATATAGCAGATCATACA
100473833 TAACG
1 TAACG
100473838 TATTACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (22 bp):
TAACGATATAGCAGATCATACA
Found at i:100473841 original size:21 final size:21
Alignment explanation
Indices: 100473801--100473841 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
100473791 TAACGAATAG
100473801 CAGATCATACATAACATATTT
1 CAGATCATACATAACATATTT
*
100473822 CAGATCATACATAACGTATT
1 CAGATCATACATAACATATT
100473842 ACAAATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (21 bp):
CAGATCATACATAACATATTT
Found at i:100478533 original size:26 final size:26
Alignment explanation
Indices: 100478494--100478600 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
100478484 CATGGTACAT
100478494 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100478520 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
100478546 TGATAATGGGTTACGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100478572 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100478597 TGAT
1 TGAT
100478601 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 21 0.28
26 54 0.72
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:100481988 original size:21 final size:20
Alignment explanation
Indices: 100481962--100482000 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
100481952 AATGCACATG
*
100481962 ATATTAAACATGATAATAATA
1 ATATTAAACACGA-AATAATA
100481983 ATATTAAACACGAAATAA
1 ATATTAAACACGAAATAA
100482001 AATCATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (20 bp):
ATATTAAACACGAAATAATA
Found at i:100482186 original size:14 final size:13
Alignment explanation
Indices: 100482159--100482228 Score: 51
Period size: 14 Copynumber: 5.5 Consensus size: 13
100482149 ATATGTACAT
100482159 AATAT-ATATAAA
1 AATATAATATAAA
100482171 AATATAATATTAAA
1 AATATAATA-TAAA
* *
100482185 AATAT-ATA-CAT
1 AATATAATATAAA
100482196 AATATAA-AGTTAAA
1 AATATAATA--TAAA
100482210 AATA-ATATATAAA
1 AATATA-ATATAAA
100482223 AATATA
1 AATATA
100482229 TACATGATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
11 7 0.16
12 6 0.13
13 15 0.33
14 16 0.36
15 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (13 bp):
AATATAATATAAA
Found at i:100482188 original size:37 final size:37
Alignment explanation
Indices: 100482141--100482249 Score: 139
Period size: 37 Copynumber: 2.9 Consensus size: 37
100482131 GCATTAATAG
* * *
100482141 TATTGAAAATATGTACATAATATATATAAAAATATAA
1 TATTAAAAATATATACATAATATATATTAAAATATAA
*
100482178 TATTAAAAATATATACATAATATAAAGTTAAAA-ATAA
1 TATTAAAAATATATACATAATATATA-TTAAAATATAA
* *
100482215 TATATAAAAATATATACATGATATCTATTAAAATA
1 TAT-TAAAAATATATACATAATATATATTAAAATA
100482250 ATATACACAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
37 36 0.58
38 26 0.42
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (37 bp):
TATTAAAAATATATACATAATATATATTAAAATATAA
Found at i:100482208 original size:25 final size:24
Alignment explanation
Indices: 100482162--100482228 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 24
100482152 TGTACATAAT
100482162 ATATATAAAAATATAATATTAAAA
1 ATATATAAAAATATAATATTAAAA
*
100482186 ATATATACATAATATAA-AGTTAAAAATA
1 ATATATA-AAAATATAATA-TT--AAA-A
100482214 ATATATAAAAATATA
1 ATATATAAAAATATA
100482229 TACATGATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
24 8 0.22
25 10 0.28
27 10 0.28
28 8 0.22
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (24 bp):
ATATATAAAAATATAATATTAAAA
Found at i:100482320 original size:22 final size:20
Alignment explanation
Indices: 100482295--100482339 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
100482285 AATTGAAGCT
*
100482295 AAAACTAATACTAATAATAGTA
1 AAAACTAATAAT-ATAATA-TA
100482317 AAAACTAATAATATAATATA
1 AAAACTAATAATATAATATA
100482337 AAA
1 AAA
100482340 TAAAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 6 0.27
22 11 0.50
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAACTAATAATATAATATA
Found at i:100482328 original size:3 final size:3
Alignment explanation
Indices: 100482300--100482476 Score: 71
Period size: 3 Copynumber: 59.0 Consensus size: 3
100482290 AAGCTAAAAC
* * *
100482300 TAA TAC TAA TAA TAG TAA AAA CTAA TAA T-A TAA T-A TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
100482343 -AA TAA AAA TAA -AGA -AA TAA TAG TAA TAA TAC GAA GAT TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
100482386 TAG TAA TAG TAA CAA TAA TGA TAA TATA TATG TATA TGAA TAG TAC TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA TAA TAA
* **
100482435 TAA TAA TAA TAA TAA TAC TAA -AA TAA TTAA TTT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
100482477 AGTAATTAAA
Statistics
Matches: 128, Mismatches: 35, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
2 12 0.09
3 100 0.78
4 15 0.12
5 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:100482465 original size:21 final size:21
Alignment explanation
Indices: 100482424--100482485 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
100482414 TATGTATATG
*
100482424 AATAGTACTAATAATAA-TAAT
1 AATAATACTAA-AATAATTAAT
100482445 AATAATACTAAAATAATTAAT
1 AATAATACTAAAATAATTAAT
** * *
100482466 TTTAATAATAAAGTAATTAA
1 AATAATACTAAAATAATTAA
100482486 AAAAGGATCG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 5 0.14
21 30 0.86
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
AATAATACTAAAATAATTAAT
Found at i:100484566 original size:46 final size:46
Alignment explanation
Indices: 100484478--100484638 Score: 206
Period size: 46 Copynumber: 3.5 Consensus size: 46
100484468 AATGTAAAAC
* *
100484478 CATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGCTAGTGTAAGA
1 CATGTCTGGGACATGGCATCGGCCTCGAGACGTAGT-C-AGTGTAAGA
*
100484525 CATGTCTGGGACAT-ACATCGGCCTCGAGACGTAAGTCAGTGTAAGA
1 CATGTCTGGGACATGGCATCGGCCTCGAGACGT-AGTCAGTGTAAGA
100484571 CATGTCTGGGACAT-GCATCGG-CTACGAGACGT-GTCAGTGTAAGA
1 CATGTCTGGGACATGGCATCGGCCT-CGAGACGTAGTCAGTGTAAGA
*
100484615 CCATGTCCGGGACATGGCATCGGC
1 -CATGTCTGGGACATGGCATCGGC
100484639 ACCTTACCCC
Statistics
Matches: 103, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 58 0.56
47 15 0.15
48 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22
Consensus pattern (46 bp):
CATGTCTGGGACATGGCATCGGCCTCGAGACGTAGTCAGTGTAAGA
Found at i:100488262 original size:47 final size:47
Alignment explanation
Indices: 100488206--100488349 Score: 191
Period size: 47 Copynumber: 3.1 Consensus size: 47
100488196 TTAGGATTTT
* *
100488206 ATGTAATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
100488253 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
100488300 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
100488347 ATG
1 ATG
100488350 CGAAACATGT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 83 0.97
48 3 0.03
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:100488376 original size:46 final size:46
Alignment explanation
Indices: 100488323--100488413 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
100488313 GGAAGTGTAT
*
100488323 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
100488369 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
100488414 TGTATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:100491484 original size:1 final size:1
Alignment explanation
Indices: 100491478--100491506 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
100491468 GGGTTTATGC
100491478 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
100491507 CCTCCATAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:100494885 original size:26 final size:25
Alignment explanation
Indices: 100494815--100494893 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
100494805 TGAAATTCCC
100494815 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
100494840 ATCATGGAA-ATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
100494865 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
100494890 ATCA
1 ATCA
100494894 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
24 10 0.19
25 32 0.62
26 10 0.19
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:100495646 original size:34 final size:35
Alignment explanation
Indices: 100495579--100495652 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 35
100495569 CTGGTCTGAT
100495579 ATGACATTCTGATATGATATATATGCTTTTGAAAAA
1 ATGACATTCTGATATGA-ATATATGCTTTTGAAAAA
* *
100495615 ATGACATTTTGATATG-ATATATG-TTTATGAAAAT
1 ATGACATTCTGATATGAATATATGCTTT-TGAAAAA
100495649 ATGA
1 ATGA
100495653 TCTTTGATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.09
34 17 0.49
36 15 0.43
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (35 bp):
ATGACATTCTGATATGAATATATGCTTTTGAAAAA
Found at i:100501030 original size:32 final size:32
Alignment explanation
Indices: 100500993--100501057 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
100500983 AATGCTTATC
100500993 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
100501025 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
100501057 A
1 A
100501058 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:100501077 original size:32 final size:31
Alignment explanation
Indices: 100500997--100501078 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
100500987 CTTATCATGC
* *
100500997 CCATCATCCATTAACTATTAAAATGCTAATG
1 CCATCATTCATCAACTATTAAAATGCTAATG
*
100501028 CCCATCATTCATTAACTATTAAAATGCTAAAATG
1 -CCATCATTCATCAACTATTAAAATGCT--AATG
100501062 -CATACATT-ATCAACTAT
1 CCAT-CATTCATCAACTAT
100501079 CCATCACCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 37 0.82
33 4 0.09
34 4 0.09
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (31 bp):
CCATCATTCATCAACTATTAAAATGCTAATG
Found at i:100506788 original size:32 final size:32
Alignment explanation
Indices: 100506751--100506815 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
100506741 AATGCTTATC
100506751 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
100506783 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
100506815 A
1 A
100506816 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:100506835 original size:32 final size:31
Alignment explanation
Indices: 100506755--100506836 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
100506745 CTTATCATGC
* *
100506755 CCATCATCCATTAACTATTAAAATGCTAATG
1 CCATCATTCATCAACTATTAAAATGCTAATG
*
100506786 CCCATCATTCATTAACTATTAAAATGCTAAAATG
1 -CCATCATTCATCAACTATTAAAATGCT--AATG
100506820 -CATACATT-ATCAACTAT
1 CCAT-CATTCATCAACTAT
100506837 CCATCACCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 37 0.82
33 4 0.09
34 4 0.09
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (31 bp):
CCATCATTCATCAACTATTAAAATGCTAATG
Found at i:100507353 original size:46 final size:46
Alignment explanation
Indices: 100507283--100507593 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
100507273 TTTGACGTGA
* * * * * *
100507283 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
100507329 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
100507375 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
100507421 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
100507466 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
100507512 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
100507550 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
100507594 AGAGCACACT
Statistics
Matches: 237, Mismatches: 18, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
38 32 0.14
39 1 0.00
40 2 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 49 0.21
46 148 0.62
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:100507505 original size:91 final size:91
Alignment explanation
Indices: 100507283--100507590 Score: 416
Period size: 91 Copynumber: 3.5 Consensus size: 91
100507273 TTTGACGTGA
* * * * * * *
100507283 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATTAGGTTGCCATGGTATCTTTCAA
** * *
100507347 CCATGGTCTTATTCTTTTCATGTCACGT
65 CCATGGTCTTACACATTTCATATCA-GT
*
100507375 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATTAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAAC
100507440 CATGGTCTTACACATTTCATATCAGT
66 CATGGTCTTACACATTTCATATCAGT
100507466 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAAC
*
100507531 CATGGTCTTACACA---C--A--GGT
66 CATGGTCTTACACATTTCATATCAGT
*
100507550 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
100507591 CAGAGAGCAC
Statistics
Matches: 200, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
84 42 0.21
86 1 0.00
88 1 0.00
91 83 0.41
92 73 0.37
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGT
Found at i:100507530 original size:137 final size:129
Alignment explanation
Indices: 100507283--100507593 Score: 417
Period size: 137 Copynumber: 2.3 Consensus size: 129
100507273 TTTGACGTGA
* * * * *
100507283 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GTTGCCATGGTATCTTTCAA
** * *
100507347 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTC
64 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA---C
100507412 ATATTAGGT
126 -----AGGT
100507421 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGTTGCCATGGTATCTTTCAACC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGTTGCCATGGTATCTTTCAACC
* *
100507486 ATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
66 ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
*
100507550 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
100507594 AGAGCACACT
Statistics
Matches: 160, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
129 47 0.29
134 1 0.01
137 79 0.49
138 33 0.21
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (129 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGTTGCCATGGTATCTTTCAACC
ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
Found at i:100507559 original size:38 final size:38
Alignment explanation
Indices: 100507508--100507580 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
100507498 ATTTCATATT
100507508 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAC
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAC
100507546 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
100507581 TATTTCATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (38 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAC
Found at i:100509734 original size:11 final size:11
Alignment explanation
Indices: 100509718--100509765 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
100509708 CTTTATATAC
100509718 TAATAAAATAA
1 TAATAAAATAA
*
100509729 TAATAAAATATCT
1 TAATAAAATA--A
* *
100509742 TATTAAAATAT
1 TAATAAAATAA
100509753 TAATAAAATAA
1 TAATAAAATAA
100509764 TA
1 TA
100509766 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:100510741 original size:22 final size:22
Alignment explanation
Indices: 100510696--100510757 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
100510686 CTATAGGCCT
100510696 TAAAT-CTCAAAC-CTTAAACTA
1 TAAATCCT-AAACTCTTAAACTA
100510717 TAAATCCTAAACTCTTAAA-TCA
1 TAAATCCTAAACTCTTAAACT-A
* *
100510739 TAAACCCTAAAATCTTAAA
1 TAAATCCTAAACTCTTAAA
100510758 AATAAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 10 0.28
22 26 0.72
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATCCTAAACTCTTAAACTA
Found at i:100511247 original size:42 final size:43
Alignment explanation
Indices: 100511193--100511338 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 43
100511183 ATTTAAGTTC
**
100511193 AAGGT-TTAGGGTATTGGGTTTAGAATTTAGTTTATAAGGTTT
1 AAGGTATTAGGGTATTGGGTTTAGGGTTTAGTTTATAAGGTTT
* *
100511235 AAGGTATT-GGGTATTGGGTTTAGGGTTTGGTCTATAGGGTTTAGGGTTT
1 AAGGTATTAGGGTATTGGGTTTAGGGTTTAGT-T-TA-----TAAGGTTT
* * *
100511284 AAGGTATT-GTGTATTTGGTTTAGGGTTTAGTCTATAAGGTTT
1 AAGGTATTAGGGTATTGGGTTTAGGGTTTAGTTTATAAGGTTT
*
100511326 AGGGTATTAGGGT
1 AAGGTATTAGGGT
100511339 TTAGTGTATT
Statistics
Matches: 84, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
42 39 0.46
43 6 0.07
44 2 0.02
47 2 0.02
49 35 0.42
ACGTcount: A:0.21, C:0.01, G:0.34, T:0.44
Consensus pattern (43 bp):
AAGGTATTAGGGTATTGGGTTTAGGGTTTAGTTTATAAGGTTT
Found at i:100511260 original size:7 final size:7
Alignment explanation
Indices: 100511250--100511342 Score: 50
Period size: 7 Copynumber: 13.1 Consensus size: 7
100511240 ATTGGGTATT
100511250 GGGTTTA
1 GGGTTTA
100511257 GGGTTT-
1 GGGTTTA
100511263 -GGTCTATA
1 GGGT-T-TA
100511271 GGGTTTA
1 GGGTTTA
100511278 GGGTTTA
1 GGGTTTA
*
100511285 AGGTATT-
1 GGGT-TTA
*
100511292 GTGTATT-
1 GGGT-TTA
*
100511299 TGGTTTA
1 GGGTTTA
100511306 GGGTTTA
1 GGGTTTA
** *
100511313 GTCTATA
1 GGGTTTA
*
100511320 AGGTTTA
1 GGGTTTA
100511327 GGGTATTA
1 GGGT-TTA
100511335 GGGTTTA
1 GGGTTTA
100511342 G
1 G
100511343 TGTATTGGTT
Statistics
Matches: 65, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
5 3 0.05
6 3 0.05
7 46 0.71
8 10 0.15
9 3 0.05
ACGTcount: A:0.18, C:0.02, G:0.35, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:100511262 original size:49 final size:49
Alignment explanation
Indices: 100511208--100511313 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 49
100511198 TTAGGGTATT
* *
100511208 GGGTTTAGAATTTA-GTTTATAAGGTTTAAGGTATTGGGTATTGGGTTTA
1 GGGTTTAGAATATAGGGTT-TAAGGTTTAAGGTATTGGGTATTGGGTTTA
* ** * * *
100511257 GGGTTTGGTCTATAGGGTTTAGGGTTTAAGGTATTGTGTATTTGGTTTA
1 GGGTTTAGAATATAGGGTTTAAGGTTTAAGGTATTGGGTATTGGGTTTA
100511306 GGGTTTAG
1 GGGTTTAG
100511314 TCTATAAGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
49 44 0.94
50 3 0.06
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (49 bp):
GGGTTTAGAATATAGGGTTTAAGGTTTAAGGTATTGGGTATTGGGTTTA
Found at i:100511317 original size:49 final size:49
Alignment explanation
Indices: 100511230--100511353 Score: 171
Period size: 49 Copynumber: 2.5 Consensus size: 49
100511220 TAGTTTATAA
* * * *
100511230 GGTTTAAGGTATTGGGTATTGGGTTTAGGGTTTGGTCTATAGGGTTTAG
1 GGTTTAAGGTATTGTGTATTTGGTTTAGGGTTTAGTCTATAAGGTTTAG
100511279 GGTTTAAGGTATTGTGTATTTGGTTTAGGGTTTAGTCTATAAGGTTTAG
1 GGTTTAAGGTATTGTGTATTTGGTTTAGGGTTTAGTCTATAAGGTTTAG
*
100511328 GGTATTAGGGT-TTAGTGTA-TTGGTTT
1 GGT-TTAAGGTATT-GTGTATTTGGTTT
100511354 TGGGATTAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
49 57 0.84
50 11 0.16
ACGTcount: A:0.18, C:0.02, G:0.35, T:0.46
Consensus pattern (49 bp):
GGTTTAAGGTATTGTGTATTTGGTTTAGGGTTTAGTCTATAAGGTTTAG
Found at i:100511733 original size:83 final size:84
Alignment explanation
Indices: 100511646--100511873 Score: 273
Period size: 84 Copynumber: 2.7 Consensus size: 84
100511636 ATTGAAACGT
* * *
100511646 CGTCGTTTTATTTCGCG-GGTAGT-GG-ATTTAGTGGCGCTATCTTATAAATGCCACTAATAATA
1 CGTCGTTTTATGTCGCGCGGT-GTAGGTA-TTAGTGGCGCTATCTTATAAACGCCACTAAGAATA
* *
100511708 TGAAAAATCGAATGAAAACTA
64 TGAAAAACCAAATGAAAACTA
* *
100511729 CGTCGTTTTATGTGGCGCGGTTTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAATATG
1 CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAATATG
*
100511794 AGAAACCAAATGAAAACTA
66 AAAAACCAAATGAAAACTA
* * * * * * * *
100511813 CGTCGTTTTATGTGGCACGGTTTAGGAATTAGTGGCGCTATCCTAAAAACACCACAAAGAA
1 CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAA
100511874 ACTGAGTTAC
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
83 16 0.12
84 111 0.87
85 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (84 bp):
CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAATATG
AAAAACCAAATGAAAACTA
Found at i:100511772 original size:84 final size:84
Alignment explanation
Indices: 100511673--100511873 Score: 303
Period size: 84 Copynumber: 2.4 Consensus size: 84
100511663 GGTAGTGGAT
* * * *
100511673 TTAGTGGCGCTATCTTATAAATGCCACTAATAATATGAAAAATCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCAAATGAAAACTACGTCGTTTT
* *
100511738 ATGTGGCGCGGTTTAGGTA
66 ATGTGGCACGGTTTAGGAA
*
100511757 TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAGAAACCAAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCAAATGAAAACTACGTCGTTTT
100511822 ATGTGGCACGGTTTAGGAA
66 ATGTGGCACGGTTTAGGAA
* * * *
100511841 TTAGTGGCGCTATCCTAAAAACACCACAAAGAA
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAA
100511874 ACTGAGTTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 106 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (84 bp):
TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCAAATGAAAACTACGTCGTTTT
ATGTGGCACGGTTTAGGAA
Found at i:100512255 original size:16 final size:16
Alignment explanation
Indices: 100512230--100512262 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
100512220 GGAATGCATA
100512230 TTTCTATTGTTAATGC
1 TTTCTATTGTTAATGC
*
100512246 TTTCTGTTGTTAATGC
1 TTTCTATTGTTAATGC
100512262 T
1 T
100512263 CAGCACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (16 bp):
TTTCTATTGTTAATGC
Found at i:100522298 original size:50 final size:51
Alignment explanation
Indices: 100522231--100522337 Score: 128
Period size: 50 Copynumber: 2.1 Consensus size: 51
100522221 AGATGTTAAG
* * *
100522231 TTTATATATTCTATCAATTT-GATCTTGATTTAACAAA-TTAAATCGTAATA
1 TTTATATATTCTATCAATTTAG-TCATAATTTAACAAATTTAAATCGTAACA
* * **
100522281 TTTATATATTTTGTCAATTTAGTCATAATTTAACAAATTTAGCTCGTAACA
1 TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCGTAACA
100522332 TTTATA
1 TTTATA
100522338 CGTTATGTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
50 31 0.65
51 17 0.35
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (51 bp):
TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCGTAACA
Found at i:100522749 original size:3 final size:3
Alignment explanation
Indices: 100522743--100522787 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
100522733 AATAATAATA
100522743 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
100522788 GTTGTTGTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:100522792 original size:3 final size:3
Alignment explanation
Indices: 100522786--100522831 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
100522776 ATTATTATTA
100522786 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG -TTG TTG
100522832 ATTCGAGTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:100523274 original size:13 final size:13
Alignment explanation
Indices: 100523256--100523285 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
100523246 CCACATAATA
100523256 CATAAATATATAT
1 CATAAATATATAT
100523269 CATAAATATATAT
1 CATAAATATATAT
100523282 CATA
1 CATA
100523286 TCATAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:100523359 original size:45 final size:45
Alignment explanation
Indices: 100523269--100523359 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
100523259 AAATATATAT
* * *
100523269 CATAAATATATATCATATCATAAGTTACATTACTTACATACCTTA
1 CATAAATATATATCATAACATAAGTTACATAACTTACAAACCTTA
* *
100523314 CATAAATGTATATCATAACATAACG-TACATAACTTACAAAGCTTA
1 CATAAATATATATCATAACATAA-GTTACATAACTTACAAACCTTA
100523359 C
1 C
100523360 TTAACTTACG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 39 0.98
46 1 0.03
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (45 bp):
CATAAATATATATCATAACATAAGTTACATAACTTACAAACCTTA
Found at i:100528504 original size:13 final size:14
Alignment explanation
Indices: 100528488--100528516 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100528478 TTCTAAATAT
100528488 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
100528501 TTATAATTGTTTAA
1 TTATAATTGTTTAA
100528515 TT
1 TT
100528517 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:100531334 original size:15 final size:14
Alignment explanation
Indices: 100531308--100531343 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
100531298 GTTTGCTTCC
100531308 GTACCAATTTTGTA
1 GTACCAATTTTGTA
100531322 GTACCATATTTTGTA
1 GTACCA-ATTTTGTA
*
100531337 ATACCAA
1 GTACCAA
100531344 ATATTGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (14 bp):
GTACCAATTTTGTA
Found at i:100534628 original size:20 final size:19
Alignment explanation
Indices: 100534575--100534628 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
100534565 TTTTTTATAA
*
100534575 TTTTTATAAATTATTAATAT
1 TTTTTATATATT-TTAATAT
*
100534595 TTTTTGA-ATTTTTTACATAT
1 TTTTT-ATATATTTTA-ATAT
100534615 TTTTTATATATTTT
1 TTTTTATATATTTT
100534629 TTTTAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.14
20 23 0.82
21 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTATATATTTTAATAT
Found at i:100534640 original size:31 final size:30
Alignment explanation
Indices: 100534531--100534640 Score: 84
Period size: 31 Copynumber: 3.6 Consensus size: 30
100534521 CCATTTGTTC
* *
100534531 ATATTTATTTTAA-ATTTACAT-TTTTATTAA
1 ATATTTTTTTTAATTTTTACATATTTT-TT-A
* * * *
100534561 ATTATTTTTTATAATTTTTATA-AATTATTA
1 A-TATTTTTTTTAATTTTTACATATTTTTTA
*
100534591 ATA-TTTTTTGAATTTTTTACATATTTTTTA
1 ATATTTTTTTTAA-TTTTTACATATTTTTTA
100534621 TATATTTTTTTTAATTTTTA
1 -ATATTTTTTTTAATTTTTA
100534641 GCGGAAAAGA
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
28 7 0.11
29 9 0.15
30 9 0.15
31 21 0.34
32 15 0.25
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (30 bp):
ATATTTTTTTTAATTTTTACATATTTTTTA
Found at i:100542688 original size:45 final size:45
Alignment explanation
Indices: 100542639--100542965 Score: 145
Period size: 45 Copynumber: 7.4 Consensus size: 45
100542629 GTTTCCCTAG
100542639 AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
1 AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
** **** * * * *
100542684 AGTTGCAGTGAAGCAGATTTAAG-CCACCAA-CCTAGCTCCCTAA
1 AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
* * * * * ** * * *
100542727 AGTTGTAGTGGAGTAGGTTGAA-A-TTTTAGGTCTT-GTTTCCCT-A
1 AGTTGCAGTGAAGCAGATCGAAGACGGTGA-ATCTTGGCTT-CCTGA
* *
100542770 GAGTTGCAGTGAAGCAGATCAAAGACGGTGAATTTTGGCTTCCTGA
1 -AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
* ** * ** * * * *
100542816 AGTTGTAGTGAAGCAGATTTAAGCCACT-AA-CCTAGCTCCCTAA
1 AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
* * * * ** * * **
100542859 AGTTGTAGTGGAGTAG-GCTGAA-A-TTTTAGGTCTTGTTTTCCTGA
1 AGTTGCAGTGAAGCAGATC-GAAGACGGTGA-ATCTTGGCTTCCTGA
*
100542903 AGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
1 AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
100542948 AGTTGCAGTGAAGCAGAT
1 AGTTGCAGTGAAGCAGAT
100542966 TTAAGCCACC
Statistics
Matches: 195, Mismatches: 71, Indels: 32
0.65 0.24 0.11
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 53 0.27
44 50 0.26
45 81 0.42
46 8 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (45 bp):
AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA
Found at i:100542730 original size:132 final size:132
Alignment explanation
Indices: 100542493--100543556 Score: 1345
Period size: 132 Copynumber: 7.9 Consensus size: 132
100542483 ATCCTACAGA
* * * *
100542493 TCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTGC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
* * *
100542558 AGTGAAGCAGATTTAAGCCACAAACCTAGCTCCCTAAAGTTGAAGTGGAGTAGGTTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
100542623 GG
131 GG
100542625 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
*
100542690 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
100542755 GG
131 GG
* * *
100542757 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGTGAATTTTGGCTTCCTGAAGTTGT
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
*
100542822 AGTGAAGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
100542887 GG
131 GG
* *
100542889 TCTTGTTTTCCT-GAAGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTG
1 TCTTGTTTCCCTAG-AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTG
* * *
100542953 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGACTAAAATTTT
65 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
100543018 AGG
130 AGG
* * * *
100543021 TCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
** * *
100543086 AGTGAAGCAGATTTAAGCCACGTGAAGCAGATTTAAGC-CACC-AACCTAGCTTCCTAAAGTTGT
66 AGTGAAGCAGATTTAAGCCAC------CA-ACCT-AGCTC-CCTAA---AG-TT-GT--AG-TGG
* * *** * **
100543149 AGT-GG-AGTAGGCTAAAA
114 AGTAGGCTGAAATTTTAGG
* * * **
100543166 TTTTAG-AT--CTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTC
1 TCTT-GTTTCCCTAGAGT---TG------CAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTC
*
100543228 CTGAAGTTGCAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
56 CTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
100543293 TGAAATTTTAGG
121 TGAAATTTTAGG
*
100543305 TCTTGTTTCCCT-GAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAGTTG
1 TCTTGTTTCCCTAG-AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTG
*
100543369 CAGTGAAGCAGATTTAAGCTACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
65 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
100543434 AGG
130 AGG
* * * * * *
100543437 TCTTGTTTCCCTGGAGTTGTAGTGAAGCAGATCGAAGACAGCGAATCTTGGCTTCTTGAAGTTAC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
* * * *
100543502 AGTGAAGCAGATTTAAGCCACTAACCTAGCTTCCTAAAGTTATAGCGGAGTAGGC
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
100543557 CGAAGATTGC
Statistics
Matches: 816, Mismatches: 78, Indels: 76
0.84 0.08 0.08
Matches are distributed among these distances:
131 1 0.00
132 670 0.82
133 2 0.00
137 5 0.01
138 9 0.01
139 13 0.02
140 7 0.01
141 5 0.01
142 4 0.00
143 6 0.01
144 6 0.01
145 12 0.01
146 7 0.01
147 5 0.01
152 64 0.08
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
GG
Found at i:100542963 original size:264 final size:264
Alignment explanation
Indices: 100542493--100543556 Score: 1592
Period size: 264 Copynumber: 4.0 Consensus size: 264
100542483 ATCCTACAGA
*
100542493 TCTTGTTTCCCTAAAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTGC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTGC
* * *
100542558 AGTGAAGCAGATTTAAGCCACAAACCTAGCTCCCTAAAGTTGAAGTGGAGTAGGTTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
100542623 GGTCTTGTTTCCCT-AGAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGT
131 GGTCTTGTTTCCCTGA-AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGT
*
100542687 TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
195 TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATT
100542752 TTAGG
260 TTAGG
* * * *
100542757 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGTGAATTTTGGCTTCCTGAAGTTGT
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTGC
*
100542822 AGTGAAGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
* *
100542887 GGTCTTGTTTTCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTT
131 GGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTT
* * *
100542952 GCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGACTAAAATTT
196 GCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTT
100543017 TAGG
261 TAGG
* * * *
100543021 TCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTT-C--------C
*
100543086 AGTGAAGCAGATTTAAGCCACGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAG
57 --T-AA--AG--TT--G-CA-GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAG
* *
100543151 TGGAGTAGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTG
111 TGGAGTAGGCTGAAATTTTAGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTG
*
100543216 AATCTTGGCTTCCTGAAGTTGCAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGT
176 AATCTTGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGT
100543281 AGTGGAGTAGGCTGAAATTTTAGG
241 AGTGGAGTAGGCTGAAATTTTAGG
* *
100543305 TCTTGTTTCCCT-GAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAGTTG
1 TCTTGTTTCCCTAG-AGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTG
*
100543369 CAGTGAAGCAGATTTAAGCTACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
65 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
* * * * *
100543434 AGGTCTTGTTTCCCTGGAGTTGTAGTGAAGCAGATCGAAGACAGCGAATCTTGGCTTCTTGAAGT
130 AGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGT
* * * * *
100543499 TACAGTGAAGCAGATTTAAGCCACTAACCTAGCTTCCTAAAGTTATAGCGGAGTAGGC
195 TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
100543557 CGAAGATTGC
Statistics
Matches: 728, Mismatches: 50, Indels: 44
0.89 0.06 0.05
Matches are distributed among these distances:
264 467 0.64
265 4 0.01
266 1 0.00
268 2 0.00
270 2 0.00
272 2 0.00
273 2 0.00
275 2 0.00
276 1 0.00
278 2 0.00
280 2 0.00
282 1 0.00
283 3 0.00
284 237 0.33
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (264 bp):
TCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTAAAGTTGC
AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
GGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTT
GCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTT
TAGG
Found at i:100543112 original size:20 final size:20
Alignment explanation
Indices: 100543087--100543126 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
100543077 TGAAGTTGCA
100543087 GTGAAGCAGATTTAAGCCAC
1 GTGAAGCAGATTTAAGCCAC
100543107 GTGAAGCAGATTTAAGCCAC
1 GTGAAGCAGATTTAAGCCAC
100543127 CAACCTAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
GTGAAGCAGATTTAAGCCAC
Found at i:100543222 original size:45 final size:45
Alignment explanation
Indices: 100543172--100543381 Score: 146
Period size: 45 Copynumber: 4.7 Consensus size: 45
100543162 AAAATTTTAG
*
100543172 ATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
1 ATCTTGCTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
* ** ****
100543217 ATCTTGGCTT-CCTGAAGTTGCAGTGAAGAAGATTTAAG-CCACCA
1 ATCTT-GCTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
* * * * * * * ** *
100543261 ACCTAGC-TCCCTAAAGTTGTAGTGGAGTAG-GCTGAA-A-TTTTA
1 ATCTTGCTTCCCTGAAGTTGCAGTGAAGCAGATC-GAAGACGGTGA
* *
100543303 GGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
1 -ATCTTGCTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
*
100543349 ATCTTGGCTT-CCTAAAGTTGCAGTGAAGCAGAT
1 ATCTT-GCTTCCCTGAAGTTGCAGTGAAGCAGAT
100543382 TTAAGCTACC
Statistics
Matches: 119, Mismatches: 36, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
42 2 0.02
43 24 0.20
44 27 0.23
45 58 0.49
46 8 0.07
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (45 bp):
ATCTTGCTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGA
Found at i:100543231 original size:152 final size:152
Alignment explanation
Indices: 100542955--100543258 Score: 527
Period size: 152 Copynumber: 2.0 Consensus size: 152
100542945 TGAAGTTGCA
*
100542955 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGACTAAAATTTTAG
1 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAATTTTAG
* *
100543020 GTCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTG
66 ATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTG
*
100543085 CAGTGAAGCAGATTTAAGCCAC
131 CAGTGAAGAAGATTTAAGCCAC
* *
100543107 GTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAG
1 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAATTTTAG
* * *
100543172 ATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTG
66 ATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTG
100543237 CAGTGAAGAAGATTTAAGCCAC
131 CAGTGAAGAAGATTTAAGCCAC
100543259 CAACCTAGCT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
152 143 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (152 bp):
GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAATTTTAG
ATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTG
CAGTGAAGAAGATTTAAGCCAC
Found at i:100543463 original size:416 final size:416
Alignment explanation
Indices: 100542691--100543522 Score: 1450
Period size: 416 Copynumber: 2.0 Consensus size: 416
100542681 TGAAGTTGCA
* *
100542691 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAG
1 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAG
* *
100542756 GTCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGTGAATTTTGGCTTCCTGAAGTTG
66 ATCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGTGAATCTTGGCTTCCTGAAGTTG
* * *
100542821 TAGTGAAGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
131 CAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
* * *
100542886 AGGTCTTGTTTTCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGT
196 AGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAGT
*
100542951 TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGACTAAAATT
261 TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAATT
*
100543016 TTAGGTCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAA
326 TTAGGTCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACAGCGAATCTTAGCTTCCTGAA
*
100543081 GTTGCAGTGAAGCAGATTTAAGCCAC
391 GTTACAGTGAAGCAGATTTAAGCCAC
*
100543107 GTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAG
1 GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAG
*
100543172 ATCTTGTTTCCCT-GAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTT
66 ATCTTGTTTCCCTAG-AGTTGCAGTGAAGCAGATCAAAGACGGTGAATCTTGGCTTCCTGAAGTT
100543236 GCAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTT
130 GCAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTT
100543301 TAGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAG
195 TAGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAG
* * *
100543366 TTGCAGTGAAGCAGATTTAAGCTACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAT
260 TTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAAT
** * *
100543431 TTTAGGTCTTGTTTCCCTGGAGTTGTAGTGAAGCAGATCGAAGACAGCGAATCTTGGCTTCTTGA
325 TTTAGGTCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACAGCGAATCTTAGCTTCCTGA
100543496 AGTTACAGTGAAGCAGATTTAAGCCAC
390 AGTTACAGTGAAGCAGATTTAAGCCAC
100543523 TAACCTAGCT
Statistics
Matches: 393, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
415 1 0.00
416 392 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (416 bp):
GTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAG
ATCTTGTTTCCCTAGAGTTGCAGTGAAGCAGATCAAAGACGGTGAATCTTGGCTTCCTGAAGTTG
CAGTGAAGAAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
AGGTCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTAAAGT
TGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTAAAATT
TTAGGTCTTGTTTCCCTGGAGTTACAGTGAAGCAGATCGAAGACAGCGAATCTTAGCTTCCTGAA
GTTACAGTGAAGCAGATTTAAGCCAC
Found at i:100543952 original size:25 final size:26
Alignment explanation
Indices: 100543924--100543972 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
100543914 CCGGCCCGAG
*
100543924 CAAACAAAACCA-AAAACCAAAAAAA
1 CAAACAAAACAAGAAAACCAAAAAAA
*
100543949 CAAACAAAACAAGAAAATCAAAAA
1 CAAACAAAACAAGAAAACCAAAAA
100543973 TATTATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.76, C:0.20, G:0.02, T:0.02
Consensus pattern (26 bp):
CAAACAAAACAAGAAAACCAAAAAAA
Found at i:100546636 original size:130 final size:131
Alignment explanation
Indices: 100546423--100546790 Score: 612
Period size: 130 Copynumber: 2.8 Consensus size: 131
100546413 AGATTTGATG
*
100546423 TTTGGCAATTAGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
*
100546488 CGAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
100546553 A
131 A
* *
100546554 TTTGGCAATTCGCGAAATTGTG-CCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
100546618 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
100546683 A
131 A
* * ** * *
100546684 TTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCACTTGTTTAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
* * *
100546749 CAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCC
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCC
100546791 TTTTAAACAA
Statistics
Matches: 221, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
130 126 0.57
131 95 0.43
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (131 bp):
TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
A
Found at i:100546833 original size:131 final size:130
Alignment explanation
Indices: 100546423--100546986 Score: 593
Period size: 131 Copynumber: 4.3 Consensus size: 130
100546413 AGATTTGATG
100546423 TTTGGCAATTAGCG-GAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAA
1 TTTGGCAATT--CGAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAA
*
100546487 TCGAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGA
64 TCAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGA
100546552 TA
129 TA
* *
100546554 TTTGGCAATTCGCGAAATTGTG-CCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGAG-AATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
100546618 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
65 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
100546683 A
130 A
* * ** * *
100546684 TTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCACTTGTTTAAAATAAT
1 TTTGGCAATTCG-AGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
* * * * * **
100546749 CAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCTTTTAAACAAAGGTAATACTTG-
65 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCC-CTTAAACGAAGGCGATA--TGC
*
100546813 G-TG
127 GATA
* * * * ** * * * *
100546816 TTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATT
1 TTTGGCAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC
* * *** * * * * *
100546881 GAATATTC-CTTTAGGTTTTTATTCATGT-TTATTAAAAA-CCTTTCAAAACGAAGGCGATGTTC
66 AAATA-TCACTTCAAAATTTCACTCATGTCTT-TTAAAAATCCCTT--AAACGAAGGCGATATGC
*
100546943 GATG
127 GATA
* * * * *
100546947 TTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGC
1 TTTGGCAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGC
100546987 GCTTTTTCAT
Statistics
Matches: 370, Mismatches: 50, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
129 6 0.02
130 131 0.35
131 203 0.55
132 27 0.07
133 1 0.00
134 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (130 bp):
TTTGGCAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC
AAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGATA
Done.